# Copyright (c) 2022, Tri Dao. # This BERT implementation is based on our MLPerf 2.0 and MLPerf 2.1 BERT implementation. # https://github.com/mlcommons/training_results_v2.0/blob/main/HazyResearch/benchmarks/bert/implementations/pytorch/modeling.py # https://github.com/mlcommons/training_results_v2.1/blob/main/Azure-HazyResearch/benchmarks/bert/implementations/ND96amsr_A100_v4/modeling.py # Inspired by https://github.com/huggingface/transformers/blob/main/src/transformers/models/bert/modeling_bert.py import os import logging from functools import partial from typing import Optional, List, Tuple, Union import torch import torch.nn as nn import torch.nn.functional as F from einops import rearrange, repeat from transformers import GPT2Config, PreTrainedModel from transformers.models.bert.modeling_bert import ( BaseModelOutputWithPoolingAndCrossAttentions, BertForPreTrainingOutput, SequenceClassifierOutput ) import re from collections import OrderedDict from safetensors.torch import load_file as safe_load_file from transformers.utils import ( SAFE_WEIGHTS_INDEX_NAME, SAFE_WEIGHTS_NAME, WEIGHTS_INDEX_NAME, WEIGHTS_NAME, ) from transformers.utils.hub import cached_file, get_checkpoint_shard_files from .configuration_hf_nomic_bert import NomicBertConfig logger = logging.getLogger(__name__) # adapted from flash attention, added safe serialization option for hf models def state_dict_from_pretrained(model_name, safe_serialization=False, device=None, dtype=None): # If not fp32, then we don't want to load directly to the GPU mapped_device = "cpu" if dtype not in [torch.float32, None] else device is_sharded = False load_safe = False resolved_archive_file = None weights_path = os.path.join(model_name, WEIGHTS_NAME) weights_index_path = os.path.join(model_name, WEIGHTS_INDEX_NAME) safe_weights_path = os.path.join(model_name, SAFE_WEIGHTS_NAME) safe_weights_index_path = os.path.join(model_name, SAFE_WEIGHTS_INDEX_NAME) if os.path.isfile(weights_path): resolved_archive_file = cached_file( model_name, WEIGHTS_NAME, _raise_exceptions_for_missing_entries=False ) elif os.path.isfile(weights_index_path): resolved_archive_file = cached_file( model_name, WEIGHTS_INDEX_NAME, _raise_exceptions_for_missing_entries=False ) is_sharded = True elif os.path.isfile(safe_weights_path): resolved_archive_file = cached_file( model_name, SAFE_WEIGHTS_NAME, _raise_exceptions_for_missing_entries=False ) load_safe = True elif os.path.isfile(safe_weights_index_path): resolved_archive_file = cached_file( model_name, SAFE_WEIGHTS_INDEX_NAME, _raise_exceptions_for_missing_entries=False ) is_sharded = True load_safe = True else: # Try loading from HF hub instead of from local files weight_name = WEIGHTS_NAME if not safe_serialization else SAFE_WEIGHTS_NAME resolved_archive_file = cached_file(model_name, weight_name, _raise_exceptions_for_missing_entries=False) if resolved_archive_file is None: weight_index = WEIGHTS_INDEX_NAME if not safe_serialization else SAFE_WEIGHTS_INDEX_NAME resolved_archive_file = cached_file(model_name, weight_index, _raise_exceptions_for_missing_entries=False) if resolved_archive_file is not None: is_sharded = True load_safe = safe_serialization if resolved_archive_file is None: raise EnvironmentError(f"Model name {model_name} was not found.") if load_safe: loader = partial(safe_load_file, device=mapped_device) else: loader = partial(torch.load, map_location=mapped_device) if is_sharded: # resolved_archive_file becomes a list of files that point to the different # checkpoint shards in this case. resolved_archive_file, sharded_metadata = get_checkpoint_shard_files( model_name, resolved_archive_file ) state_dict = {} for sharded_file in resolved_archive_file: state_dict.update(loader(sharded_file)) else: state_dict = loader(resolved_archive_file) # Convert dtype before moving to GPU to save memory if dtype is not None: state_dict = {k: v.to(dtype=dtype) for k, v in state_dict.items()} state_dict = {k: v.to(device=device) for k, v in state_dict.items()} return state_dict def filter_shapes(state_dict, model): """ Filters the state dict to match the current model shape. """ filtered_state_dict = {} for key, value in state_dict.items(): if key in model.state_dict(): if value.shape == model.state_dict()[key].shape: filtered_state_dict[key] = value return filtered_state_dict def remap_bert_state_dict(state_dict, config, remove_bert=False, remove_cls_weights=False, add_pooling_layer=False): """ Map the state_dict of a Huggingface BERT model to be flash_attn compatible. """ def add_bert_prefix(key): # prepend bert. to the key if key.startswith("bert.") or key.startswith("cls."): return key return f"bert.{key}" state_dict = OrderedDict((add_bert_prefix(k), v) for k, v in state_dict.items()) # LayerNorm def key_mapping_ln_gamma_beta(key): key = re.sub(r"LayerNorm.gamma$", "LayerNorm.weight", key) key = re.sub(r"LayerNorm.beta$", "LayerNorm.bias", key) return key state_dict = OrderedDict((key_mapping_ln_gamma_beta(k), v) for k, v in state_dict.items()) # Layers def key_mapping_layers(key): return re.sub(r"^bert.encoder.layer\.", "bert.encoder.layers.", key) state_dict = OrderedDict((key_mapping_layers(k), v) for k, v in state_dict.items()) # LayerNorm def key_mapping_ln(key): key = re.sub(r"^bert.embeddings.LayerNorm.", "bert.emb_ln.", key) key = re.sub( r"^bert.encoder.layers.(\d+).attention.output.LayerNorm.(weight|bias)", r"bert.encoder.layers.\1.norm1.\2", key, ) key = re.sub( r"^bert.encoder.layers.(\d+).output.LayerNorm.(weight|bias)", r"bert.encoder.layers.\1.norm2.\2", key, ) key = re.sub( r"^cls.predictions.transform.LayerNorm.(weight|bias)", r"cls.predictions.transform.layer_norm.\1", key, ) return key state_dict = OrderedDict((key_mapping_ln(k), v) for k, v in state_dict.items()) # MLP def key_mapping_mlp(key): key = re.sub( r"^bert.encoder.layers.(\d+).intermediate.dense.(weight|bias)", r"bert.encoder.layers.\1.mlp.fc1.\2", key, ) key = re.sub( r"^bert.encoder.layers.(\d+).output.dense.(weight|bias)", r"bert.encoder.layers.\1.mlp.fc2.\2", key, ) return key state_dict = OrderedDict((key_mapping_mlp(k), v) for k, v in state_dict.items()) # Attention last_layer_subset = getattr(config, "last_layer_subset", False) for d in range(config.num_hidden_layers): if f"bert.encoder.layers.{d}.attention.self.query.weight" not in state_dict: continue Wq = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.query.weight") Wk = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.key.weight") Wv = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.value.weight") bq = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.query.bias") bk = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.key.bias") bv = state_dict.pop(f"bert.encoder.layers.{d}.attention.self.value.bias") if not (last_layer_subset and d == config.num_hidden_layers - 1): state_dict[f"bert.encoder.layers.{d}.attn.Wqkv.weight"] = torch.cat( [Wq, Wk, Wv], dim=0 ) state_dict[f"bert.encoder.layers.{d}.attn.Wqkv.bias"] = torch.cat([bq, bk, bv], dim=0) else: state_dict[f"bert.encoder.layers.{d}.attn.Wq.weight"] = Wq state_dict[f"bert.encoder.layers.{d}.attn.Wkv.weight"] = torch.cat([Wk, Wv], dim=0) state_dict[f"bert.encoder.layers.{d}.attn.Wq.bias"] = bq state_dict[f"bert.encoder.layers.{d}.attn.Wkv.bias"] = torch.cat([bk, bv], dim=0) def key_mapping_attn(key): return re.sub( r"^bert.encoder.layers.(\d+).attention.output.dense.(weight|bias)", r"bert.encoder.layers.\1.attn.out_proj.\2", key, ) state_dict = OrderedDict((key_mapping_attn(k), v) for k, v in state_dict.items()) def key_mapping_decoder_bias(key): return re.sub(r"^cls.predictions.bias", "cls.predictions.decoder.bias", key) # remove nsp weights, we don't use state_dict.pop("cls.seq_relationship.weight", None) state_dict.pop("cls.seq_relationship.bias", None) state_dict.pop("bert.embeddings.position_ids", None) state_dict = OrderedDict((key_mapping_decoder_bias(k), v) for k, v in state_dict.items()) # Word embedding pad_vocab_size_multiple = getattr(config, "pad_vocab_size_multiple", 1) if pad_vocab_size_multiple > 1: word_embeddings = state_dict["bert.embeddings.word_embeddings.weight"] state_dict["bert.embeddings.word_embeddings.weight"] = F.pad( word_embeddings, (0, 0, 0, config.vocab_size - word_embeddings.shape[0]) ) decoder_weight = state_dict["cls.predictions.decoder.weight"] state_dict["cls.predictions.decoder.weight"] = F.pad( decoder_weight, (0, 0, 0, config.vocab_size - decoder_weight.shape[0]) ) # If the vocab was padded, we want to set the decoder bias for those padded indices to be # strongly negative (i.e. the decoder shouldn't predict those indices). # TD [2022-05-09]: I don't think it affects the MLPerf training. if "cls.predictions.decoder.bias" in state_dict: decoder_bias = state_dict["cls.predictions.decoder.bias"] state_dict["cls.predictions.decoder.bias"] = F.pad( decoder_bias, (0, config.vocab_size - decoder_bias.shape[0]), value=-100.0 ) if add_pooling_layer is False: pooler_weights = ["bert.pooler.dense.weight", "bert.pooler.dense.bias", ] for key in pooler_weights: state_dict.pop(key, None) if remove_cls_weights: cls_weights = ["cls.predictions.decoder.bias", "cls.predictions.transform.dense.weight", "cls.predictions.transform.dense.bias", "cls.predictions.transform.layer_norm.weight", "cls.predictions.transform.layer_norm.bias", "cls.predictions.decoder.weight"] for weight in cls_weights: state_dict.pop(weight, None) if remove_bert: def remove_bert_prefix(key): key = re.sub(r"^bert.", "", key) return key state_dict = OrderedDict((remove_bert_prefix(k), v) for k, v in state_dict.items()) return state_dict class NomicBertPreTrainedModel(PreTrainedModel): """An abstract class to handle weights initialization and a simple interface for dowloading and loading pretrained models. """ config_class = NomicBertConfig base_model_prefix = "model" supports_gradient_checkpointing = True _no_split_modules = ["Block"] _skip_keys_device_placement = "past_key_values" def __init__(self, config, *inputs, **kwargs): super().__init__(config) if not isinstance(config, GPT2Config): raise ValueError( "Parameter config in `{}(config)` should be an instance of class `GPT2Config`. " "To create a model from a Google pretrained model use " "`model = {}.from_pretrained(PRETRAINED_MODEL_NAME)`".format( self.__class__.__name__, self.__class__.__name__ ) ) self.config = config @classmethod def from_pretrained(cls, model_name, config=None, *inputs, **kwargs): """ Instantiate a NomicBertPreTrainedModel from a pre-trained model file or a pytorch state dict. Download and cache the pre-trained model file if needed. Params: pretrained_model_name_or_path: either: - a path or url to a pretrained model archive containing: . `bert_config.json` a configuration file for the model . `pytorch_model.bin` a PyTorch dump of a NomicBertForPretraining instance - a path or url to a pretrained model archive containing: . `bert_config.json` a configuration file for the model . `model.chkpt` a TensorFlow checkpoint *inputs, **kwargs: additional input for the specific NomicBert class (ex: num_labels for NomicBertForSequenceClassification) """ # Instantiate model. if config is None: config = cls.config_class.from_pretrained(model_name) remove_cls = cls != NomicBertForPreTraining remove_bert_prefix = cls != NomicBertForPreTraining ignore_mismatched_shapes = kwargs.pop("ignore_mismatched_sizes", False) num_labels = kwargs.pop("num_labels", None) if num_labels: config.num_labels = num_labels model = cls(config, *inputs) # TODO: fix this # Assuming we know what we're doing when loading from disk # Prob a bad assumption but i'm tired and want to train this asap if os.path.exists(model_name): state_dict = torch.load(f"{model_name}/pytorch_model.bin") if ignore_mismatched_shapes: state_dict = filter_shapes(state_dict, model) load_return = model.load_state_dict(state_dict, strict=False) else: # TODO: can probably check config class and see if we need to remap from a bert model state_dict = state_dict_from_pretrained(model_name) state_dict = remap_bert_state_dict(state_dict, config, remove_bert=remove_bert_prefix, remove_cls_weights=remove_cls, add_pooling_layer=getattr(config, "add_pooling_layer", False) ) if ignore_mismatched_shapes: state_dict = filter_shapes(state_dict, model) load_return = model.load_state_dict( state_dict, strict=True ) logger.warning(load_return) return model def _set_gradient_checkpointing(self, module, value=False): if isinstance(module, NomicBertEncoder): module.gradient_checkpointing = value # https://github.com/huggingface/transformers/blob/7032e0203262ebb2ebf55da8d2e01f873973e835/src/transformers/models/bert/modeling_bert.py#L748 def _init_weights(module, initializer_range=0.02): if isinstance(module, nn.Linear): nn.init.normal_(module.weight, std=initializer_range) if module.bias is not None: nn.init.zeros_(module.bias) elif isinstance(module, nn.Embedding): nn.init.normal_(module.weight, std=initializer_range) if module.padding_idx is not None: nn.init.zeros_(module.weight[module.padding_idx]) class NomicBertEmbeddings(nn.Module): def __init__( self, config ): """ If max_position_embeddings <= 0, there's no position embeddings If type_vocab_size <= 0, there's no token type embeddings """ super().__init__() self.word_embeddings = nn.Embedding( config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id ) self.max_position_embeddings = config.max_position_embeddings self.type_vocab_size = config.type_vocab_size if self.max_position_embeddings > 0: self.position_embeddings = nn.Embedding( config.max_position_embeddings, config.hidden_size, ) if self.type_vocab_size > 0: self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size) def forward(self, input_ids, position_ids=None, token_type_ids=None): """ input_ids: (batch, seqlen) position_ids: (batch, seqlen) token_type_ids: (batch, seqlen) """ batch_size, seqlen = input_ids.shape embeddings = self.word_embeddings(input_ids) if self.type_vocab_size > 0: if token_type_ids is None: token_type_ids = torch.zeros(seqlen, dtype=torch.long, device=input_ids.device) token_type_embeddings = self.token_type_embeddings(token_type_ids) embeddings = embeddings + token_type_embeddings if self.max_position_embeddings > 0: if position_ids is None: position_ids = torch.arange(seqlen, dtype=torch.long, device=input_ids.device) position_embeddings = self.position_embeddings(position_ids) embeddings = embeddings + position_embeddings return embeddings class NomicBertMLP(nn.Module): def __init__( self, in_features, hidden_features=None, out_features=None, activation=F.gelu, bias1=True, bias2=True, return_residual=False, fused_bias_fc=False, ): super().__init__() out_features = out_features if out_features is not None else in_features hidden_features = hidden_features if hidden_features is not None else in_features * 4 self.return_residual = return_residual self.fc1 = nn.Linear(in_features, hidden_features, bias=bias1) approximate = ( "tanh" if activation in ["gelu_new", "gelu_fast", "gelu_pytorch_tanh"] else "none" ) self.activation = nn.GELU(approximate=approximate) if activation == "gelu" else activation self.fc2 = nn.Linear(hidden_features, out_features, bias=bias2) def forward(self, x): y = self.fc1(x) y = self.activation(y) y = self.fc2(y) return y if not self.return_residual else (y, x) class NomciBertGatedMLP(nn.Module): def __init__( self, in_features, hidden_features=None, out_features=None, activation=F.sigmoid, bias1=True, bias2=True, multiple_of=256, return_residual=False, fused_bias_fc=True, device=None, dtype=None, ): super().__init__() out_features = out_features if out_features is not None else in_features hidden_features = ( hidden_features if hidden_features is not None else int(8 * in_features / 3) ) hidden_features = (hidden_features + multiple_of - 1) // multiple_of * multiple_of self.return_residual = return_residual self.fc11 = nn.Linear(in_features, hidden_features, bias=bias1) self.fc12 = nn.Linear(in_features, hidden_features, bias=bias1) self.activation = activation self.fc2 = nn.Linear(hidden_features, out_features, bias=bias2) def forward(self, x): y = self.fc11(x) gate = self.fc12(x) if self.activation == F.sigmoid: # Special case for GLU y = F.glu(torch.cat([y, gate], dim=-1), dim=-1) else: y = y * self.activation(gate) y = self.fc2(y) return y if not self.return_residual else (y, x) def rotate_half(x, interleaved=False): if not interleaved: x1, x2 = x.chunk(2, dim=-1) return torch.cat((-x2, x1), dim=-1) else: x1, x2 = x[..., ::2], x[..., 1::2] return rearrange(torch.stack((-x2, x1), dim=-1), "... d two -> ... (d two)", two=2) def apply_rotary_emb(x, cos, sin, offset=0, interleaved=False): """ x: (batch_size, seqlen, nheads, headdim) cos, sin: (seqlen, rotary_dim / 2) or (batch_size, seqlen, rotary_dim / 2) """ ro_dim = cos.shape[-1] * 2 assert ro_dim <= x.shape[-1] cos, sin = ( cos[offset: offset + x.shape[1]], sin[offset: offset + x.shape[1]], ) cos = repeat(cos, "... d -> ... 1 (2 d)" if not interleaved else "... d -> ... 1 (d 2)") sin = repeat(sin, "... d -> ... 1 (2 d)" if not interleaved else "... d -> ... 1 (d 2)") return torch.cat( [x[..., :ro_dim] * cos + rotate_half(x[..., :ro_dim], interleaved) * sin, x[..., ro_dim:]], dim=-1, ) class NomicBertRotaryEmbedding(nn.Module): def __init__( self, dim: int, base=10000.0, interleaved=False, scale_base=None, pos_idx_in_fp32=True, device=None, ): """ interleaved: if True, rotate pairs of even and odd dimensions (GPT-J style) instead of 1st half and 2nd half (GPT-NeoX style). pos_idx_in_fp32: if True, the position indices [0.0, ..., seqlen - 1] are in fp32, otherwise they might be in lower precision. This option was added because previously (before 2023-07-02), when we construct the position indices, we use the dtype of self.inv_freq. In most cases this would be fp32, but if the model is trained in pure bf16 (not mixed precision), then self.inv_freq would be bf16, and the position indices are also in bf16. Because of the limited precision of bf16 (e.g. 1995.0 is rounded to 2000.0), the embeddings for some positions will coincide. To maintain compatibility with models previously trained in pure bf16, we add this option. """ super().__init__() self.dim = dim self.base = float(base) self.pos_idx_in_fp32 = pos_idx_in_fp32 # Generate and save the inverse frequency buffer (non trainable) inv_freq = self._compute_inv_freq(device) self.register_buffer("inv_freq", inv_freq, persistent=False) self.interleaved = interleaved self.scale_base = scale_base self._seq_len_cached = 0 self._cos_cached = None self._sin_cached = None self._cos_k_cached = None self._sin_k_cached = None def _compute_inv_freq(self, device=None): return 1.0 / ( self.base ** (torch.arange(0, self.dim, 2, device=device, dtype=torch.float32) / self.dim) ) def _update_cos_sin_cache(self, seqlen, device=None, dtype=None): # Reset the tables if the sequence length has changed, # if we're on a new device (possibly due to tracing for instance), # or if we're switching from inference mode to training if ( seqlen > self._seq_len_cached or self._cos_cached is None or self._cos_cached.device != device or self._cos_cached.dtype != dtype or (self.training and self._cos_cached.is_inference()) ): self._seq_len_cached = seqlen # We want fp32 here, not self.inv_freq.dtype, since the model could be loaded in bf16 # And the output of arange can be quite large, so bf16 would lose a lot of precision. # However, for compatibility reason, we add an option to use the dtype of self.inv_freq. if self.pos_idx_in_fp32: t = torch.arange(seqlen, device=device, dtype=torch.float32) # We want fp32 here as well since inv_freq will be multiplied with t, and the output # will be large. Having it in bf16 will lose a lot of precision and cause the # cos & sin output to change significantly. # We want to recompute self.inv_freq if it was not loaded in fp32 if self.inv_freq.dtype != torch.float32: inv_freq = self._compute_inv_freq(device=device) else: inv_freq = self.inv_freq else: t = torch.arange(seqlen, device=device, dtype=self.inv_freq.dtype) inv_freq = self.inv_freq # Don't do einsum, it converts fp32 to fp16 under AMP # freqs = torch.einsum("i,j->ij", t, self.inv_freq) freqs = torch.outer(t, inv_freq) self._cos_cached = torch.cos(freqs).to(dtype) self._sin_cached = torch.sin(freqs).to(dtype) def forward( self, qkv: torch.Tensor, kv: Optional[torch.Tensor] = None, seqlen_offset: Union[int, torch.Tensor] = 0, max_seqlen: Optional[int] = None, ) -> Tuple[torch.Tensor, torch.Tensor]: """ qkv: (batch, seqlen, 3, nheads, headdim) if kv is none, else it's just q of shape (batch, seqlen, nheads, headdim) kv: (batch, seqlen, 2, nheads, headdim) seqlen_offset: (batch_size,) or int. Each sequence in x is shifted by this amount. Most commonly used in inference when we have KV cache. If it's a tensor of shape (batch_size,), then to update the cos / sin cache, one should pass in max_seqlen, which will update the cos / sin cache up to that length. Apply rotary embedding *inplace* to qkv and / or kv. """ seqlen = qkv.shape[1] if max_seqlen is not None: self._update_cos_sin_cache(max_seqlen, device=qkv.device, dtype=qkv.dtype) elif isinstance(seqlen_offset, int): self._update_cos_sin_cache(seqlen + seqlen_offset, device=qkv.device, dtype=qkv.dtype) q_rot = apply_rotary_emb(qkv[:, :, 0], self._cos_cached, self._sin_cached, seqlen_offset, self.interleaved) k_rot = apply_rotary_emb(qkv[:, :, 1], self._cos_cached, self._sin_cached, seqlen_offset, self.interleaved) return torch.stack((q_rot, k_rot, qkv[:, :, 2]), dim=2) class NomicBertAttention(nn.Module): """Multi-head self-attention and cross-attention""" def __init__( self, config, ) -> None: """ num_heads_kv: can be used to toggle MQA / GQA. If None, use num_heads. return_residual: whether to return the input x along with the output. This is for performance reason: for post-norm architecture, returning the input allows us to fuse the backward of nn.Linear with the residual connection. """ super().__init__() self.embed_dim = config.n_embd self.use_flash_attn = config.use_flash_attn self.fused_bias_fc = config.fused_bias_fc self.num_heads = config.n_head self.num_heads_kv = config.num_heads_kv if getattr(config, "num_heads_kv", None) is not None else self.num_heads assert self.embed_dim % self.num_heads == 0, "embed_dim must be divisible by num_heads" self.head_dim = self.embed_dim // self.num_heads # we don't really support mqa / gqa for now qkv_dim = self.head_dim * (self.num_heads + 2 * self.num_heads_kv) self.register_buffer( "norm_factor", torch.sqrt(torch.tensor(self.head_dim, dtype=torch.float32)).to(torch.get_default_dtype()), persistent=False, ) self.rotary_emb_dim = self.head_dim * config.rotary_emb_fraction if self.rotary_emb_dim > 0: self.rotary_emb = NomicBertRotaryEmbedding( self.rotary_emb_dim, base=config.rotary_emb_base, scale_base=config.rotary_emb_scale_base, interleaved=config.rotary_emb_interleaved, ) # bug in xformers: https://github.com/facebookresearch/xformers/issues/841 # uses the head dimension instead of the sequence dimension self.rotary_head_dim = getattr(config, "rotary_head_dim", False) self.Wqkv = nn.Linear(self.embed_dim, qkv_dim, bias=config.qkv_proj_bias) self.out_proj = nn.Linear(self.embed_dim, self.embed_dim, bias=config.qkv_proj_bias) self.causal = config.causal self.drop = nn.Dropout(config.attn_pdrop) def forward( self, hidden_states: torch.Tensor, attention_mask: Optional[torch.Tensor] = None, position_ids: Optional[torch.LongTensor] = None, past_key_value: Optional[Tuple[torch.Tensor]] = None, output_attentions: bool = False, use_cache: bool = False, is_padded_inputs: Optional[bool] = True, cu_seqlens: Optional[torch.Tensor] = None, max_seq_len: Optional[int] = None, ) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]: has_layer_past = past_key_value is not None if has_layer_past: past_key_value = past_key_value[0] past_len = past_key_value[1] else: past_len = 0 qkv = self.Wqkv(hidden_states) qkv = rearrange(qkv, "... (three h d) -> ... three h d", three=3, d=self.head_dim) past_key_value = (past_key_value, past_len + qkv.size(1)) if use_cache else None if self.rotary_emb_dim > 0: if self.rotary_head_dim: qkv = rearrange(qkv, "b s three h d -> b h three s d") qkv = self.rotary_emb(qkv, seqlen_offset=past_len) if self.rotary_head_dim: qkv = rearrange(qkv, "b h three s d -> b s three h d") query, key, value = qkv[:, :, 0], qkv[:, :, 1], qkv[:, :, 2] query = query.permute(0, 2, 1, 3) key = key.permute(0, 2, 1, 3) value = value.permute(0, 2, 1, 3) attention_scores = torch.matmul(query, key.transpose(-1, -2)) / self.norm_factor if attention_mask is not None: attention_scores = attention_scores + attention_mask attentions_probs = F.softmax(attention_scores, dim=-1) attentions_probs = self.drop(attentions_probs) attn_output = torch.matmul(attentions_probs, value) attn_output = rearrange(attn_output.permute(0, 2, 1, 3), "... h d -> ... (h d)") attn_output = self.out_proj(attn_output) return attn_output class NomicBertBlock(nn.Module): def __init__( self, config, ): super().__init__() self.prenorm = config.prenorm self.fused_dropout_add_ln = config.fused_dropout_add_ln self.attn = NomicBertAttention(config) activation = ( F.sigmoid if config.activation_function == "glu" else (F.silu if config.activation_function == "swiglu" else F.gelu) ) if config.activation_function in ["glu", "swiglu", "geglu"]: self.mlp = NomciBertGatedMLP(config.n_embd, hidden_features=config.n_inner, bias1=config.mlp_fc1_bias, bias2=config.mlp_fc2_bias, activation=activation, fused_bias_fc=config.fused_bias_fc) else: self.mlp = NomicBertMLP(config.n_embd, hidden_features=config.n_inner, bias1=config.mlp_fc1_bias, bias2=config.mlp_fc2_bias, activation=activation, fused_bias_fc=config.fused_bias_fc) self.dropout1 = nn.Dropout(config.resid_pdrop) self.norm1 = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) self.norm2 = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) self.dropout2 = nn.Dropout(config.resid_pdrop) def forward( self, hidden_states: torch.Tensor, hidden_states2: torch.Tensor, residual: Optional[torch.Tensor] = None, attention_mask: Optional[torch.Tensor] = None, position_ids: Optional[torch.LongTensor] = None, past_key_value: Optional[Tuple[torch.Tensor]] = None, is_padded_inputs: Optional[bool] = True, output_attentions: Optional[bool] = False, use_cache: Optional[bool] = False, cu_seqlens: Optional[torch.Tensor] = None, max_seq_len: Optional[int] = None, ): r"""Pass the input through the encoder layer. Args: hidden_states: the sequence to the encoder layer (required). residual: if postnorm, residual=None, If prenorm, hidden_states = Attn/MLP(LN(residual)) mixer_subset: for cross-attention only. If not None, will take a subset of x before applying the query projection. Useful for e.g., ViT where we only care about the CLS token in the last layer. """ if self.prenorm: dropped = self.dropout1(hidden_states) residual = (dropped + residual) if residual is not None else dropped hidden_states = self.norm1(residual.to(dtype=self.norm1.weight.dtype)) hidden_states = self.attn(hidden_states, attention_mask=attention_mask, is_padded_inputs=is_padded_inputs, cu_seqlens=cu_seqlens, max_seq_len=max_seq_len) dropped = self.dropout2(hidden_states) residual = (dropped + residual) if residual is not None else dropped hidden_states = self.norm2(residual.to(dtype=self.norm2.weight.dtype)) hidden_states = self.mlp(hidden_states) return hidden_states, None, residual else: assert residual is None attn_outputs = self.attn(hidden_states, attention_mask=attention_mask, is_padded_inputs=is_padded_inputs, cu_seqlens=cu_seqlens, max_seq_len=max_seq_len) hidden_states = self.norm1( (self.dropout1(attn_outputs) + hidden_states).to( dtype=self.norm1.weight.dtype ) ) mlp_out = self.mlp(hidden_states) hidden_states = self.norm2( (self.dropout2(mlp_out) + hidden_states).to( dtype=self.norm2.weight.dtype ) ) return hidden_states, None, None class NomicBertEncoder(nn.Module): def __init__(self, config: GPT2Config): super().__init__() self.layers = nn.ModuleList( [NomicBertBlock(config) for _ in range(config.n_layer)] ) self.gradient_checkpointing = False self.config = config def forward(self, hidden_states: torch.LongTensor = None, attention_mask: Optional[torch.Tensor] = None, position_ids: Optional[torch.LongTensor] = None, past_key_values: Optional[List[torch.FloatTensor]] = None, inputs_embeds: Optional[torch.FloatTensor] = None, use_cache: Optional[bool] = None, output_attentions: Optional[bool] = None, output_hidden_states: Optional[bool] = None, return_dict: Optional[bool] = None, is_padded_inputs: Optional[bool] = True,): """If subset_mask is not None, we only want output for the subset of the sequence. This means that we only compute the last layer output for these tokens. subset_mask: (batch, seqlen), dtype=torch.bool """ hidden_states2 = None residual = None for _, layer in enumerate(self.layers): if self.gradient_checkpointing and self.training: def create_custom_forward(module): def custom_forward(*inputs): # None for past_key_value return module(*inputs) return custom_forward hidden_states, hidden_states2, residual = torch.utils.checkpoint.checkpoint( create_custom_forward(layer), hidden_states, hidden_states2, residual, attention_mask, None, None, is_padded_inputs, # if you freeze ANY layers, you need `use_reentrant=False` # https://github.com/huggingface/transformers/issues/21381 # https://discuss.pytorch.org/t/checkpoint-with-no-grad-requiring-inputs-problem/19117/7 use_reentrant=False, ) else: hidden_states, hidden_states2, residual = layer( hidden_states, hidden_states2, residual, attention_mask, position_ids, None, is_padded_inputs, output_attentions, use_cache, ) return hidden_states class NomicBertPooler(nn.Module): def __init__(self, config): super().__init__() self.dense = nn.Linear(config.n_embd, config.n_embd) self.activation = nn.Tanh() def forward(self, hidden_states, pool=True): # We "pool" the model by simply taking the hidden state corresponding # to the first token. first_token_tensor = hidden_states[:, 0] if pool else hidden_states pooled_output = self.dense(first_token_tensor) pooled_output = self.activation(pooled_output) return pooled_output class NomicBertPredictionHeadTransform(nn.Module): def __init__(self, config): super().__init__() self.dense = nn.Linear(config.n_embd, config.n_embd, bias=config.mlp_fc1_bias) approximate = ( "tanh" if config.activation_function in ["gelu_new", "gelu_fast", "gelu_pytorch_tanh"] else "none" ) if config.activation_function == "swiglu": self.transform_act_fn = F.silu else: self.transform_act_fn = nn.GELU(approximate=approximate) self.layer_norm = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) def forward(self, hidden_states: torch.Tensor) -> torch.Tensor: hidden_states = self.dense(hidden_states) hidden_states = self.transform_act_fn(hidden_states) hidden_states = self.layer_norm(hidden_states) return hidden_states class NomicBertLMPredictionHead(nn.Module): def __init__(self, config): super().__init__() self.transform = NomicBertPredictionHeadTransform(config) self.decoder = nn.Linear(config.n_embd, config.vocab_size, bias=config.mlp_fc1_bias) def forward(self, hidden_states): hidden_states = self.transform(hidden_states) hidden_states = self.decoder(hidden_states) return hidden_states class NomicBertPreTrainingHeads(nn.Module): def __init__(self, config): super().__init__() self.predictions = NomicBertLMPredictionHead(config) def forward(self, sequence_output): prediction_scores = self.predictions(sequence_output) return prediction_scores class NomicBertModel(NomicBertPreTrainedModel): def __init__(self, config: GPT2Config, add_pooling_layer=True): super().__init__(config) self.pad_vocab_size_multiple = getattr(config, "pad_vocab_size_multiple", 1) if config.vocab_size % self.pad_vocab_size_multiple != 0: config.vocab_size += self.pad_vocab_size_multiple - ( config.vocab_size % self.pad_vocab_size_multiple ) assert config.activation_function in ["gelu", "gelu_new", "gelu_fast", "gelu_pytorch_tanh", "swiglu", "geglu", "glu"] self.embeddings = NomicBertEmbeddings( config ) self.emb_drop = nn.Dropout(config.resid_pdrop) self.emb_ln = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon) self.encoder = NomicBertEncoder(config) self.pooler = NomicBertPooler(config) if add_pooling_layer else None self.apply(partial(_init_weights, initializer_range=config.initializer_range)) def forward( self, input_ids, position_ids=None, token_type_ids=None, attention_mask=None, ): if token_type_ids is None: token_type_ids = torch.zeros_like(input_ids) hidden_states = self.embeddings( input_ids, position_ids=position_ids, token_type_ids=token_type_ids ) hidden_states = self.emb_ln(hidden_states) hidden_states = self.emb_drop(hidden_states) attention_mask = self.get_extended_attention_mask(attention_mask, input_ids.shape) sequence_output = self.encoder( hidden_states, attention_mask=attention_mask ) pooled_output = self.pooler(sequence_output) if self.pooler is not None else None return BaseModelOutputWithPoolingAndCrossAttentions( last_hidden_state=sequence_output, pooler_output=pooled_output, ) class NomicBertForPreTraining(NomicBertPreTrainedModel): _tied_weights_keys = ["predictions.decoder.bias", "cls.predictions.decoder.weight"] def __init__(self, config: GPT2Config): super().__init__(config) self.bert = NomicBertModel(config, add_pooling_layer=getattr(config, "add_pooling_layer", False)) self.cls = NomicBertPreTrainingHeads(config) self.mlm_loss = nn.CrossEntropyLoss() # Initialize weights and apply final processing self.apply(partial(_init_weights, initializer_range=config.initializer_range)) self.tie_weights() def tie_weights(self): self.cls.predictions.decoder.weight = self.bert.embeddings.word_embeddings.weight def forward( self, input_ids, position_ids=None, token_type_ids=None, attention_mask=None, labels=None, ): """ If labels are provided, they must be -100 for masked out tokens (as specified in the attention mask). Outputs: if `labels` and `next_sentence_label` are not `None`: Outputs the total_loss which is the sum of the masked language modeling loss and the next sentence classification loss. if `labels` or `next_sentence_label` is `None`: Outputs a tuple comprising - the masked language modeling logits of shape [batch_size, sequence_length, vocab_size], and - the next sentence classification logits of shape [batch_size, 2]. """ outputs = self.bert( input_ids, position_ids=position_ids, token_type_ids=token_type_ids, attention_mask=attention_mask.bool() if attention_mask is not None else None, ) sequence_output, _ = outputs.last_hidden_state, outputs.pooler_output prediction_scores = self.cls(sequence_output) total_loss = None if labels is not None: masked_lm_loss = self.mlm_loss( rearrange(prediction_scores, "... v -> (...) v"), rearrange(labels, "... -> (...)"), ) total_loss = masked_lm_loss.float() return BertForPreTrainingOutput( loss=total_loss, prediction_logits=prediction_scores, ) class NomicBertForSequenceClassification(NomicBertPreTrainedModel): def __init__(self, config): super().__init__(config) self.num_labels = config.num_labels self.config = config self.bert = NomicBertModel(config) classifier_dropout = ( getattr(config, "classifier_dropout", config.embd_pdrop) ) self.dropout = nn.Dropout(classifier_dropout) self.classifier = nn.Linear(config.n_embd, config.num_labels) # Initialize weights and apply final processing self.post_init() def forward( self, input_ids: Optional[torch.Tensor] = None, attention_mask: Optional[torch.Tensor] = None, token_type_ids: Optional[torch.Tensor] = None, position_ids: Optional[torch.Tensor] = None, head_mask: Optional[torch.Tensor] = None, inputs_embeds: Optional[torch.Tensor] = None, labels: Optional[torch.Tensor] = None, output_attentions: Optional[bool] = None, output_hidden_states: Optional[bool] = None, return_dict: Optional[bool] = None, ): r""" labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*): Labels for computing the sequence classification/regression loss. Indices should be in `[0, ..., config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If `config.num_labels > 1` a classification loss is computed (Cross-Entropy). """ return_dict = return_dict if return_dict is not None else self.config.use_return_dict outputs = self.bert( input_ids, position_ids=position_ids, token_type_ids=token_type_ids, attention_mask=attention_mask.bool() if attention_mask is not None else None, ) pooled_output = outputs[1] pooled_output = self.dropout(pooled_output) logits = self.classifier(pooled_output) loss = None if labels is not None: if self.config.problem_type is None: if self.num_labels == 1: self.config.problem_type = "regression" elif self.num_labels > 1 and (labels.dtype == torch.long or labels.dtype == torch.int): self.config.problem_type = "single_label_classification" else: self.config.problem_type = "multi_label_classification" if self.config.problem_type == "regression": loss_fct = nn.MSELoss() if self.num_labels == 1: loss = loss_fct(logits.squeeze(), labels.squeeze()) else: loss = loss_fct(logits, labels) elif self.config.problem_type == "single_label_classification": loss_fct = nn.CrossEntropyLoss() loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1)) elif self.config.problem_type == "multi_label_classification": loss_fct = nn.BCEWithLogitsLoss() loss = loss_fct(logits, labels) if not return_dict: output = (logits,) + outputs[2:] return ((loss,) + output) if loss is not None else output return SequenceClassifierOutput( loss=loss, logits=logits, hidden_states=outputs.hidden_states, attentions=outputs.attentions, )