{ "imports": [ "$import glob", "$import os", "$import ignite", "$import json", "$import urllib" ], "validate#handlers": [ { "_target_": "StatsHandler", "iteration_log": false }, { "_target_": "CheckpointLoader", "load_path": "$@ckpt_dir + '/model.pt'", "load_dict": { "model": "@network" } }, { "_target_": "MetricsSaver", "save_dir": "@output_dir", "metrics": [ "val_mean_dice", "ar/dice", "ve/dice", "ur/dice", "ki/dice", "tu/dice", "tu/haunsdorff", "tu/surface" ], "metric_details": [ "val_mean_dice" ], "batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])", "summary_ops": "*" } ], "download_data": [ "$import logging", "$import zipfile", "$import os", "$logging.info('Downloading 298Mb data zip archive, please wait... (To see progress bar, download manually from https://disk.yandex.ru/d/pWEKt6D3qi3-aw , and extract data to bundle_root - ' + @bundle_root + ')')", "$urllib.request.urlretrieve(json.loads(urllib.request.urlopen('https://cloud-api.yandex.net/v1/disk/public/resources/download?public_key=https%3A%2F%2Fdisk.yandex.ru%2Fd%2FpWEKt6D3qi3-aw').read())['href'], @bundle_root + '/AVUCTK_cases.zip')", "$zipfile.ZipFile(os.path.join(@bundle_root, 'AVUCTK_cases.zip'), 'r').extractall(@bundle_root)", "$os.remove(os.path.join(@bundle_root, 'AVUCTK_cases.zip'))", "$logging.info('Data extracted to ' + @bundle_root)" ], "evaluate": [ "$monai.utils.set_determinism(seed=42)", "$setattr(torch.backends.cudnn, 'benchmark', True)", "$@validate#evaluator.run()" ] }