diff --git "a/config.json" "b/config.json" --- "a/config.json" +++ "b/config.json" @@ -1,7 +1,7 @@ { "_name_or_path": "michiyasunaga/BioLinkBERT-base", "architectures": [ - "BertModel" + "BertForTokenClassification" ], "attention_probs_dropout_prob": 0.1, "classifier_dropout": null, @@ -9,8 +9,12148 @@ "hidden_act": "gelu", "hidden_dropout_prob": 0.1, "hidden_size": 768, + "id2label": { + "0": "an_em_COREF:None)", + "1": "an_em_COREF:coref)", + "2": "an_em_RE:None)", + "3": "an_em_RE:frag)", + "4": "an_em_RE:Part-of)", + "5": "an_em_ner:O)", + "6": "an_em_ner:B-Cell)", + "7": "an_em_ner:B-Multi-tissue_structure)", + "8": "an_em_ner:I-Cell)", + "9": "an_em_ner:B-Organ)", + "10": "an_em_ner:B-Pathological_formation)", + "11": "an_em_ner:I-Multi-tissue_structure)", + "12": "an_em_ner:B-Organism_substance)", + "13": "an_em_ner:I-Pathological_formation)", + "14": "an_em_ner:B-Cellular_component)", + "15": "an_em_ner:B-Tissue)", + "16": "an_em_ner:B-Organism_subdivision)", + "17": "an_em_ner:I-Tissue)", + "18": "an_em_ner:I-Organism_substance)", + "19": "an_em_ner:B-Anatomical_system)", + "20": "an_em_ner:I-Organ)", + "21": "an_em_ner:B-Immaterial_anatomical_entity)", + "22": "an_em_ner:I-Cellular_component)", + "23": "an_em_ner:I-Anatomical_system)", + "24": "an_em_ner:B-Developing_anatomical_structure)", + "25": "an_em_ner:I-Immaterial_anatomical_entity)", + "26": "an_em_ner:I-Organism_subdivision)", + "27": "an_em_ner:I-Developing_anatomical_structure)", + "28": "anat_em_ner:O)", + "29": "anat_em_ner:B-Cell)", + "30": "anat_em_ner:I-Cell)", + "31": "anat_em_ner:B-Cancer)", + "32": "anat_em_ner:I-Cancer)", + "33": "anat_em_ner:B-Multi-tissue_structure)", + "34": "anat_em_ner:I-Multi-tissue_structure)", + "35": "anat_em_ner:B-Tissue)", + "36": "anat_em_ner:B-Organ)", + "37": "anat_em_ner:B-Cellular_component)", + "38": "anat_em_ner:B-Organism_substance)", + "39": "anat_em_ner:I-Tissue)", + "40": "anat_em_ner:B-Pathological_formation)", + "41": 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"bionlp_st_2013_ge_RE:ToLoc)", + "368": "bionlp_st_2013_ge_RE:Site2)", + "369": "bionlp_st_2013_ge_RE:CSite)", + "370": "bionlp_st_2013_ge_RE:Cause|Theme)", + "371": "bionlp_st_2013_ge_ner:O)", + "372": "bionlp_st_2013_ge_ner:B-Protein)", + "373": "bionlp_st_2013_ge_ner:B-Entity)", + "374": "bionlp_st_2013_ge_ner:I-Protein)", + "375": "bionlp_st_2013_ge_ner:I-Entity)", + "376": "bionlp_st_2013_gro_NER:O)", + "377": "bionlp_st_2013_gro_NER:B-PositiveRegulation)", + "378": "bionlp_st_2013_gro_NER:B-GeneExpression)", + "379": "bionlp_st_2013_gro_NER:B-RegulatoryProcess)", + "380": "bionlp_st_2013_gro_NER:B-BindingToProtein)", + "381": "bionlp_st_2013_gro_NER:B-NegativeRegulation)", + "382": "bionlp_st_2013_gro_NER:B-Disease)", + "383": "bionlp_st_2013_gro_NER:B-Transcription)", + "384": "bionlp_st_2013_gro_NER:I-Disease)", + "385": "bionlp_st_2013_gro_NER:B-Increase)", + "386": "bionlp_st_2013_gro_NER:B-SignalingPathway)", + "387": "bionlp_st_2013_gro_NER:B-Mutation)", + "388": "bionlp_st_2013_gro_NER:B-Localization)", + "389": "bionlp_st_2013_gro_NER:B-BindingOfProteinToDNA)", + "390": "bionlp_st_2013_gro_NER:B-Phosphorylation)", + "391": "bionlp_st_2013_gro_NER:B-Decrease)", + "392": "bionlp_st_2013_gro_NER:I-SignalingPathway)", + "393": "bionlp_st_2013_gro_NER:B-CellDeath)", + "394": "bionlp_st_2013_gro_NER:B-Transport)", + "395": "bionlp_st_2013_gro_NER:B-CellularProcess)", + "396": "bionlp_st_2013_gro_NER:B-DevelopmentalProcess)", + "397": "bionlp_st_2013_gro_NER:B-PositiveRegulationOfGeneExpression)", + "398": "bionlp_st_2013_gro_NER:B-ResponseProcess)", + "399": "bionlp_st_2013_gro_NER:B-Binding)", + "400": "bionlp_st_2013_gro_NER:B-CellDifferentiation)", + "401": "bionlp_st_2013_gro_NER:I-GeneExpression)", + "402": "bionlp_st_2013_gro_NER:B-TranscriptionOfGene)", + "403": "bionlp_st_2013_gro_NER:I-CellularProcess)", + "404": "bionlp_st_2013_gro_NER:I-CellDeath)", + "405": "bionlp_st_2013_gro_NER:B-ProteinCatabolism)", + "406": "bionlp_st_2013_gro_NER:B-CellGrowth)", + "407": "bionlp_st_2013_gro_NER:B-MetabolicPathway)", + "408": "bionlp_st_2013_gro_NER:I-CellDifferentiation)", + "409": "bionlp_st_2013_gro_NER:B-CellularDevelopmentalProcess)", + "410": "bionlp_st_2013_gro_NER:I-ResponseProcess)", + "411": "bionlp_st_2013_gro_NER:B-BindingToRNA)", + "412": "bionlp_st_2013_gro_NER:B-RNASplicing)", + "413": "bionlp_st_2013_gro_NER:B-NegativeRegulationOfTranscription)", + "414": "bionlp_st_2013_gro_NER:I-NegativeRegulationOfTranscription)", + "415": "bionlp_st_2013_gro_NER:I-DevelopmentalProcess)", + "416": "bionlp_st_2013_gro_NER:B-Splicing)", + "417": "bionlp_st_2013_gro_NER:B-ProteinTargeting)", + "418": "bionlp_st_2013_gro_NER:B-Heterodimerization)", + "419": "bionlp_st_2013_gro_NER:B-TranscriptionInitiation)", + "420": "bionlp_st_2013_gro_NER:B-CellCycle)", + "421": "bionlp_st_2013_gro_NER:B-CellularComponentOrganizationAndBiogenesis)", + "422": "bionlp_st_2013_gro_NER:B-Maintenance)", + "423": "bionlp_st_2013_gro_NER:B-BindingOfTFToTFBindingSiteOfDNA)", + "424": "bionlp_st_2013_gro_NER:I-RNASplicing)", + "425": "bionlp_st_2013_gro_NER:B-PositiveRegulationOfTranscription)", + "426": "bionlp_st_2013_gro_NER:B-CellCyclePhase)", + "427": "bionlp_st_2013_gro_NER:B-Affecting)", + "428": "bionlp_st_2013_gro_NER:I-CellCycle)", + "429": "bionlp_st_2013_gro_NER:I-Transcription)", + "430": "bionlp_st_2013_gro_NER:I-MetabolicPathway)", + "431": "bionlp_st_2013_gro_NER:I-TranscriptionInitiation)", + "432": "bionlp_st_2013_gro_NER:B-CellCyclePhaseTransition)", + "433": "bionlp_st_2013_gro_NER:B-CellularMetabolicProcess)", + "434": "bionlp_st_2013_gro_NER:I-Mutation)", + "435": "bionlp_st_2013_gro_NER:I-PositiveRegulationOfGeneExpression)", + "436": "bionlp_st_2013_gro_NER:I-BindingToProtein)", + "437": "bionlp_st_2013_gro_NER:I-PositiveRegulationOfTranscription)", + "438": "bionlp_st_2013_gro_NER:I-CellCyclePhase)", + "439": "bionlp_st_2013_gro_NER:I-PositiveRegulationOfTranscriptionOfGene)", + "440": "bionlp_st_2013_gro_NER:B-ProteinBiosynthesis)", + "441": "bionlp_st_2013_gro_NER:I-CellularMetabolicProcess)", + "442": "bionlp_st_2013_gro_NER:I-CellularDevelopmentalProcess)", + "443": "bionlp_st_2013_gro_NER:B-Pathway)", + "444": "bionlp_st_2013_gro_NER:I-Splicing)", + "445": "bionlp_st_2013_gro_NER:B-BindingOfTranscriptionFactorToDNA)", + "446": "bionlp_st_2013_gro_NER:I-RegulatoryProcess)", + "447": "bionlp_st_2013_gro_NER:B-Homodimerization)", + "448": "bionlp_st_2013_gro_NER:B-PositiveRegulationOfTranscriptionOfGene)", + "449": "bionlp_st_2013_gro_NER:B-BindingOfProteinToProteinBindingSiteOfProtein)", + "450": "bionlp_st_2013_gro_NER:B-RegulationOfTranscription)", + "451": "bionlp_st_2013_gro_NER:I-RegulationOfTranscription)", + "452": "bionlp_st_2013_gro_NER:B-RNAProcessing)", + "453": "bionlp_st_2013_gro_NER:I-NegativeRegulation)", + "454": "bionlp_st_2013_gro_NER:I-CellCyclePhaseTransition)", + "455": "bionlp_st_2013_gro_NER:B-Elongation)", + "456": "bionlp_st_2013_gro_NER:B-ModificationOfMolecularEntity)", + "457": "bionlp_st_2013_gro_NER:I-CellGrowth)", + "458": "bionlp_st_2013_gro_NER:B-Dimerization)", + "459": "bionlp_st_2013_gro_NER:I-RNAProcessing)", + "460": "bionlp_st_2013_gro_NER:B-CellAdhesion)", + "461": "bionlp_st_2013_gro_NER:I-CellularComponentOrganizationAndBiogenesis)", + "462": "bionlp_st_2013_gro_NER:I-PositiveRegulation)", + "463": "bionlp_st_2013_gro_NER:B-FormationOfProteinDNAComplex)", + "464": "bionlp_st_2013_gro_NER:B-TranscriptionTermination)", + "465": "bionlp_st_2013_gro_NER:B-ProteinTransport)", + "466": "bionlp_st_2013_gro_NER:B-FormationOfTranscriptionFactorComplex)", + "467": "bionlp_st_2013_gro_NER:B-CellHomeostasis)", + "468": "bionlp_st_2013_gro_NER:I-Pathway)", + "469": "bionlp_st_2013_gro_NER:B-Cleavage)", + "470": "bionlp_st_2013_gro_NER:I-CellHomeostasis)", + "471": "bionlp_st_2013_gro_NER:I-Increase)", + "472": "bionlp_st_2013_gro_NER:I-RNABiosynthesis)", + "473": "bionlp_st_2013_gro_NER:B-Translation)", + "474": "bionlp_st_2013_gro_NER:B-RegulationOfGeneExpression)", + "475": "bionlp_st_2013_gro_NER:I-RegulationOfGeneExpression)", + "476": "bionlp_st_2013_gro_NER:B-Producing)", + "477": "bionlp_st_2013_gro_NER:I-CellAdhesion)", + "478": "bionlp_st_2013_gro_NER:I-Localization)", + "479": "bionlp_st_2013_gro_NER:B-ResponseToChemicalStimulus)", + "480": "bionlp_st_2013_gro_NER:B-OrganismalProcess)", + "481": "bionlp_st_2013_gro_NER:I-Transport)", + "482": "bionlp_st_2013_gro_NER:B-CatabolicPathway)", + "483": "bionlp_st_2013_gro_NER:B-RNABiosynthesis)", + "484": "bionlp_st_2013_gro_NER:B-BindingOfProteinToProteinBindingSiteOfDNA)", + "485": "bionlp_st_2013_gro_NER:I-BindingToRNA)", + "486": "bionlp_st_2013_gro_NER:I-ProteinTransport)", + "487": "bionlp_st_2013_gro_NER:B-ProteinModification)", + "488": "bionlp_st_2013_gro_NER:B-Silencing)", + "489": "bionlp_st_2013_gro_NER:I-Decrease)", + "490": "bionlp_st_2013_gro_NER:B-NegativeRegulationOfTranscriptionOfGene)", + "491": "bionlp_st_2013_gro_NER:B-BindingToMolecularEntity)", + "492": "bionlp_st_2013_gro_NER:I-BindingOfTFToTFBindingSiteOfDNA)", + "493": "bionlp_st_2013_gro_NER:B-BindingOfTFToTFBindingSiteOfProtein)", + "494": "bionlp_st_2013_gro_NER:I-OrganismalProcess)", + "495": "bionlp_st_2013_gro_NER:I-ProteinBiosynthesis)", + "496": "bionlp_st_2013_gro_NER:I-Elongation)", + "497": "bionlp_st_2013_gro_NER:I-ProteinCatabolism)", + "498": "bionlp_st_2013_gro_NER:B-Mitosis)", + "499": "bionlp_st_2013_gro_NER:B-Modification)", + "500": "bionlp_st_2013_gro_NER:B-Methylation)", + "501": "bionlp_st_2013_gro_NER:B-CellAging)", + "502": "bionlp_st_2013_gro_NER:B-Acetylation)", + "503": "bionlp_st_2013_gro_NER:I-TranscriptionOfGene)", + "504": "bionlp_st_2013_gro_NER:I-SPhase)", + "505": "bionlp_st_2013_gro_NER:B-ActivationOfProcess)", + "506": "bionlp_st_2013_gro_NER:I-FormationOfProteinDNAComplex)", + "507": "bionlp_st_2013_gro_NER:B-RegulationOfProcess)", + "508": "bionlp_st_2013_gro_NER:I-NegativeRegulationOfTranscriptionOfGene)", + "509": "bionlp_st_2013_gro_NER:B-MolecularInteraction)", + "510": "bionlp_st_2013_gro_NER:B-NegativeRegulationOfTranscriptionByTranscriptionRepressor)", + "511": "bionlp_st_2013_gro_NER:I-CellFateDetermination)", + "512": "bionlp_st_2013_gro_NER:B-RNAMetabolism)", + "513": "bionlp_st_2013_gro_NER:I-RNAMetabolism)", + "514": "bionlp_st_2013_gro_NER:B-ProteinMetabolism)", + "515": "bionlp_st_2013_gro_NER:I-Binding)", + "516": "bionlp_st_2013_gro_NER:I-Homodimerization)", + "517": "bionlp_st_2013_gro_NER:I-BindingOfProteinToProteinBindingSiteOfProtein)", + "518": "bionlp_st_2013_gro_NER:B-BindingOfDNABindingDomainOfProteinToDNA)", + "519": "bionlp_st_2013_gro_NER:B-GeneMutation)", + "520": "bionlp_st_2013_gro_NER:B-Growth)", + "521": "bionlp_st_2013_gro_NER:I-BindingOfTFToTFBindingSiteOfProtein)", + "522": "bionlp_st_2013_gro_NER:I-CatabolicPathway)", + "523": "bionlp_st_2013_gro_NER:I-TranscriptionTermination)", + "524": "bionlp_st_2013_gro_NER:B-BindingOfMolecularEntity)", + "525": "bionlp_st_2013_gro_NER:I-Heterodimerization)", + "526": "bionlp_st_2013_gro_NER:B-MolecularProcess)", + "527": "bionlp_st_2013_gro_NER:B-RegulationOfPathway)", + "528": "bionlp_st_2013_gro_NER:B-GeneSilencing)", + "529": "bionlp_st_2013_gro_NER:I-GeneSilencing)", + "530": "bionlp_st_2013_gro_NER:B-G1Phase)", + "531": "bionlp_st_2013_gro_NER:B-SPhase)", + "532": "bionlp_st_2013_gro_NER:B-Stabilization)", + "533": "bionlp_st_2013_gro_NER:B-FormationOfTranscriptionInitiationComplex)", + "534": "bionlp_st_2013_gro_NER:B-IntraCellularProcess)", + "535": "bionlp_st_2013_gro_NER:I-IntraCellularProcess)", + "536": "bionlp_st_2013_gro_NER:I-BindingOfProteinToDNA)", + "537": "bionlp_st_2013_gro_NER:I-Translation)", + "538": "bionlp_st_2013_gro_NER:B-IntraCellularTransport)", + "539": "bionlp_st_2013_gro_NER:I-IntraCellularTransport)", + "540": "bionlp_st_2013_gro_NER:B-RegulationOfFunction)", + "541": "bionlp_st_2013_gro_NER:B-PosttranslationalModification)", + "542": "bionlp_st_2013_gro_NER:I-PosttranslationalModification)", + "543": "bionlp_st_2013_gro_NER:B-ExperimentalIntervention)", + "544": "bionlp_st_2013_gro_NER:B-CellMotility)", + "545": "bionlp_st_2013_gro_NER:I-Phosphorylation)", + "546": "bionlp_st_2013_gro_NER:B-CellDivision)", + "547": "bionlp_st_2013_gro_NER:I-CellDivision)", + "548": "bionlp_st_2013_gro_NER:B-BindingOfProtein)", + "549": "bionlp_st_2013_gro_NER:B-NegativeRegulationOfGeneExpression)", + "550": "bionlp_st_2013_gro_NER:I-NegativeRegulationOfGeneExpression)", + "551": "bionlp_st_2013_gro_NER:I-Silencing)", + "552": "bionlp_st_2013_gro_NER:B-CellFateDetermination)", + "553": "bionlp_st_2013_gro_RE:None)", + "554": "bionlp_st_2013_gro_RE:hasPart)", + "555": "bionlp_st_2013_gro_RE:fromSpecies)", + "556": "bionlp_st_2013_gro_RE:locatedIn)", + "557": "bionlp_st_2013_gro_RE:encodes)", + "558": "bionlp_st_2013_gro_RE:hasFunction)", + "559": "bionlp_st_2013_gro_ner:O)", + "560": "bionlp_st_2013_gro_ner:B-Protein)", + "561": "bionlp_st_2013_gro_ner:I-Protein)", + "562": "bionlp_st_2013_gro_ner:B-Eukaryote)", + "563": "bionlp_st_2013_gro_ner:B-Gene)", + "564": "bionlp_st_2013_gro_ner:B-Cell)", + "565": "bionlp_st_2013_gro_ner:B-Enzyme)", + "566": "bionlp_st_2013_gro_ner:I-Cell)", + "567": "bionlp_st_2013_gro_ner:B-TranscriptionFactor)", + "568": "bionlp_st_2013_gro_ner:B-Tissue)", + "569": "bionlp_st_2013_gro_ner:B-ProteinDomain)", + "570": "bionlp_st_2013_gro_ner:I-TranscriptionFactor)", + "571": "bionlp_st_2013_gro_ner:B-DNA)", + "572": "bionlp_st_2013_gro_ner:B-ProteinSubunit)", + "573": "bionlp_st_2013_gro_ner:I-Gene)", + "574": "bionlp_st_2013_gro_ner:I-ProteinDomain)", + "575": "bionlp_st_2013_gro_ner:I-Enzyme)", + "576": "bionlp_st_2013_gro_ner:B-CellComponent)", + "577": "bionlp_st_2013_gro_ner:B-AminoAcid)", + "578": "bionlp_st_2013_gro_ner:I-Tissue)", + "579": "bionlp_st_2013_gro_ner:B-ProteinComplex)", + "580": "bionlp_st_2013_gro_ner:B-Chemical)", + "581": "bionlp_st_2013_gro_ner:B-Chromosome)", + "582": "bionlp_st_2013_gro_ner:I-ProteinSubunit)", + "583": "bionlp_st_2013_gro_ner:I-AminoAcid)", + "584": "bionlp_st_2013_gro_ner:B-Promoter)", + "585": "bionlp_st_2013_gro_ner:B-MessengerRNA)", + "586": "bionlp_st_2013_gro_ner:B-Virus)", + "587": "bionlp_st_2013_gro_ner:B-Nucleus)", + "588": "bionlp_st_2013_gro_ner:B-Peptide)", + "589": "bionlp_st_2013_gro_ner:I-ProteinComplex)", + "590": "bionlp_st_2013_gro_ner:B-Sequence)", + "591": "bionlp_st_2013_gro_ner:I-DNA)", + "592": "bionlp_st_2013_gro_ner:B-Ion)", + "593": "bionlp_st_2013_gro_ner:I-CellComponent)", + "594": "bionlp_st_2013_gro_ner:B-DNARegion)", + "595": "bionlp_st_2013_gro_ner:I-DNARegion)", + "596": "bionlp_st_2013_gro_ner:B-ExperimentalMethod)", + "597": "bionlp_st_2013_gro_ner:I-Virus)", + "598": "bionlp_st_2013_gro_ner:I-Chromosome)", + "599": "bionlp_st_2013_gro_ner:B-Transcript)", + "600": "bionlp_st_2013_gro_ner:B-OrganicChemical)", + "601": "bionlp_st_2013_gro_ner:I-ZincCoordinatingDomain)", + "602": "bionlp_st_2013_gro_ner:B-RNA)", + "603": "bionlp_st_2013_gro_ner:B-Function)", + "604": "bionlp_st_2013_gro_ner:B-MutantProtein)", + "605": "bionlp_st_2013_gro_ner:B-Exon)", + "606": "bionlp_st_2013_gro_ner:B-CatalyticActivity)", + "607": "bionlp_st_2013_gro_ner:I-MutantProtein)", + "608": "bionlp_st_2013_gro_ner:B-ZincCoordinatingDomain)", + "609": "bionlp_st_2013_gro_ner:I-Eukaryote)", + "610": "bionlp_st_2013_gro_ner:I-ExperimentalMethod)", + "611": "bionlp_st_2013_gro_ner:B-TranscriptionRegulator)", + "612": "bionlp_st_2013_gro_ner:B-Enhancer)", + "613": "bionlp_st_2013_gro_ner:I-Chemical)", + "614": "bionlp_st_2013_gro_ner:B-Ligand)", + "615": "bionlp_st_2013_gro_ner:I-Peptide)", + "616": "bionlp_st_2013_gro_ner:B-TranscriptionCofactor)", + "617": "bionlp_st_2013_gro_ner:I-OpenReadingFrame)", + "618": "bionlp_st_2013_gro_ner:I-ProteinBindingSiteOfDNA)", + "619": "bionlp_st_2013_gro_ner:B-Nucleotide)", + "620": "bionlp_st_2013_gro_ner:I-DNABindingDomainOfProtein)", + "621": "bionlp_st_2013_gro_ner:B-ProteinBindingSiteOfDNA)", + "622": "bionlp_st_2013_gro_ner:B-DNABindingDomainOfProtein)", + "623": "bionlp_st_2013_gro_ner:B-TranscriptionActivator)", + "624": "bionlp_st_2013_gro_ner:B-MutatedProtein)", + "625": "bionlp_st_2013_gro_ner:I-RegulatoryDNARegion)", + "626": "bionlp_st_2013_gro_ner:I-GeneProduct)", + "627": "bionlp_st_2013_gro_ner:I-Promoter)", + "628": "bionlp_st_2013_gro_ner:I-MutatedProtein)", + "629": "bionlp_st_2013_gro_ner:B-ForkheadWingedHelixTF)", + "630": "bionlp_st_2013_gro_ner:I-RNAPolymerase)", + "631": "bionlp_st_2013_gro_ner:I-TranscriptionRegulator)", + "632": "bionlp_st_2013_gro_ner:B-Prokaryote)", + "633": "bionlp_st_2013_gro_ner:B-RegulatoryDNARegion)", + "634": "bionlp_st_2013_gro_ner:B-MolecularStructure)", + "635": "bionlp_st_2013_gro_ner:B-ReporterGene)", + "636": "bionlp_st_2013_gro_ner:I-ReporterGene)", + "637": "bionlp_st_2013_gro_ner:B-TranscriptionCoactivator)", + "638": "bionlp_st_2013_gro_ner:I-RNA)", + "639": "bionlp_st_2013_gro_ner:B-bHLHTF)", + "640": "bionlp_st_2013_gro_ner:I-Enhancer)", + "641": "bionlp_st_2013_gro_ner:I-OrganicChemical)", + "642": "bionlp_st_2013_gro_ner:I-ForkheadWingedHelixTF)", + "643": "bionlp_st_2013_gro_ner:B-GeneProduct)", + "644": "bionlp_st_2013_gro_ner:B-TranscriptionRepressor)", + "645": "bionlp_st_2013_gro_ner:B-HomeoboxTF)", + "646": "bionlp_st_2013_gro_ner:B-Lipid)", + "647": "bionlp_st_2013_gro_ner:B-OpenReadingFrame)", + "648": "bionlp_st_2013_gro_ner:I-RNAPolymeraseII)", + "649": "bionlp_st_2013_gro_ner:B-tRNA)", + "650": "bionlp_st_2013_gro_ner:I-ZincCoordinatingDomainTF)", + "651": "bionlp_st_2013_gro_ner:I-MessengerRNA)", + "652": "bionlp_st_2013_gro_ner:I-Sequence)", + "653": "bionlp_st_2013_gro_ner:I-NuclearReceptor)", + "654": "bionlp_st_2013_gro_ner:B-Intron)", + "655": "bionlp_st_2013_gro_ner:I-TranscriptionCoactivator)", + "656": "bionlp_st_2013_gro_ner:B-MolecularEntity)", + "657": "bionlp_st_2013_gro_ner:B-HMG)", + "658": "bionlp_st_2013_gro_ner:B-bHLH)", + "659": "bionlp_st_2013_gro_ner:I-Prokaryote)", + "660": "bionlp_st_2013_gro_ner:I-TranscriptionRepressor)", + "661": "bionlp_st_2013_gro_ner:I-bHLHTF)", + "662": "bionlp_st_2013_gro_ner:B-Stress)", + "663": "bionlp_st_2013_gro_ner:B-DNAFragment)", + "664": "bionlp_st_2013_gro_ner:I-CatalyticActivity)", + "665": "bionlp_st_2013_gro_ner:I-TranscriptionActivator)", + "666": "bionlp_st_2013_gro_ner:I-Exon)", + "667": "bionlp_st_2013_gro_ner:B-RNAPolymerase)", + "668": "bionlp_st_2013_gro_ner:I-UpstreamRegulatorySequence)", + "669": "bionlp_st_2013_gro_ner:I-Stress)", + "670": "bionlp_st_2013_gro_ner:I-Function)", + "671": "bionlp_st_2013_gro_ner:I-Nucleus)", + "672": "bionlp_st_2013_gro_ner:B-FusionProtein)", + "673": 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