jambo commited on
Commit
b497d43
1 Parent(s): fc0e19a

End of training

Browse files

eval_results.txt ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
1
+ eval_loss = 0.4027480185031891
2
+ eval_precision = 0.9384057971014492
3
+ eval_recall = 0.9055944055944056
4
+ eval_f1 = 0.9217081850533808
5
+ eval_accuracy = 0.9107505070993914
6
+ eval_auc = 0.9577716969021316
7
+ eval_runtime = 1.8908
8
+ eval_samples_per_second = 260.739
9
+ eval_steps_per_second = 16.395
10
+ epoch = 6.0
predict_results/test_predictions.csv ADDED
@@ -0,0 +1,494 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,pmid,label,markerType,prediction,label_binary,proba
2
+ 124,26549757.0,1,gene,1,1,0.99678373
3
+ 77,11839404.0,0,chemical,0,0,0.0009486322
4
+ 83,,0,snp,0,0,0.0009716418
5
+ 252,,1,snp,1,1,0.98575354
6
+ 356,15255457.0,1,gene,1,1,0.998116
7
+ 50,,1,snp,1,1,0.9983633
8
+ 54,,1,snp,1,1,0.9982697
9
+ 334,9492179.0,0,gene,0,0,0.0011773536
10
+ 298,25955575.0,1,gene,1,1,0.99654263
11
+ 1567,505679.0,0,chemical,0,0,0.0069562816
12
+ 84,,0,snp,0,0,0.0010119139
13
+ 1179,26662448.0,1,gene,1,1,0.9980903
14
+ 143,26549757.0,0,gene,0,0,0.01229192
15
+ 95,,1,snp,1,1,0.9984964
16
+ 238,1387863.0,1,gene,1,1,0.996837
17
+ 91,,0,snp,0,0,0.001031882
18
+ 281,9492179.0,0,gene,0,0,0.0011298981
19
+ 257,,1,snp,1,1,0.99841475
20
+ 969,18390427.0,0,chemical,0,0,0.00669539
21
+ 1143,6282727.0,0,gene,0,0,0.021560915
22
+ 1194,26662448.0,1,gene,1,1,0.9983596
23
+ 926,10731506.0,1,chemical,1,1,0.9873147
24
+ 288,22173610.0,1,gene,1,1,0.9981724
25
+ 143,,0,snp,0,0,0.006273734
26
+ 687,7327289.0,0,chemical,0,0,0.000773981
27
+ 112,20332649.0,0,chemical,1,0,0.94282645
28
+ 225,,1,snp,1,1,0.9983741
29
+ 73,,1,snp,1,1,0.99674463
30
+ 249,,1,snp,1,1,0.99859005
31
+ 51,,1,snp,1,1,0.99706703
32
+ 869,32963727.0,1,gene,1,1,0.9968124
33
+ 207,,1,snp,0,1,0.0012376935
34
+ 106,20332649.0,0,chemical,0,0,0.001069815
35
+ 178,,1,snp,1,1,0.9977081
36
+ 1583,2119041.0,0,chemical,0,0,0.002064074
37
+ 142,,0,snp,0,0,0.005320617
38
+ 328,12408500.0,1,gene,1,1,0.99765956
39
+ 220,,1,snp,1,1,0.9976342
40
+ 78,,1,snp,1,1,0.99733174
41
+ 239,,1,snp,1,1,0.98719066
42
+ 2,,1,snp,1,1,0.997355
43
+ 607,11127335.0,0,chemical,0,0,0.061519418
44
+ 1460,19284577.0,1,gene,0,1,0.02922975
45
+ 127,,1,snp,1,1,0.9978416
46
+ 118,,1,snp,1,1,0.99786913
47
+ 6,,1,snp,1,1,0.99735487
48
+ 217,1387863.0,0,gene,0,0,0.23090306
49
+ 1159,19854709.0,0,gene,0,0,0.0009471555
50
+ 213,,0,snp,0,0,0.010502462
51
+ 309,21892537.0,1,gene,1,1,0.8517625
52
+ 158,,1,snp,1,1,0.99030113
53
+ 121,,1,snp,1,1,0.9976174
54
+ 414,1568728.0,1,chemical,1,1,0.99547356
55
+ 1216,19854709.0,0,gene,0,0,0.31458455
56
+ 132,,1,snp,1,1,0.9980421
57
+ 255,,1,snp,1,1,0.99837446
58
+ 72,,1,snp,1,1,0.9964851
59
+ 38,,1,snp,1,1,0.9979025
60
+ 184,,1,snp,1,1,0.99834263
61
+ 42,31531016.0,1,gene,1,1,0.9969574
62
+ 327,2460156.0,0,gene,0,0,0.01142349
63
+ 116,28921461.0,0,chemical,0,0,0.001057169
64
+ 1626,505679.0,0,chemical,0,0,0.007450192
65
+ 210,,1,snp,0,1,0.0014087544
66
+ 1052,26662448.0,1,gene,1,1,0.99833655
67
+ 264,1639952.0,0,gene,1,0,0.5136839
68
+ 195,,1,snp,1,1,0.9984409
69
+ 920,10940758.0,1,chemical,1,1,0.99768305
70
+ 996,18390427.0,0,chemical,0,0,0.0011066836
71
+ 65,,1,snp,1,1,0.99815804
72
+ 109,19708783.0,0,chemical,0,0,0.0066866186
73
+ 1288,10592468.0,1,gene,1,1,0.9946313
74
+ 39,,1,snp,1,1,0.9984511
75
+ 1038,12089604.0,0,chemical,0,0,0.023111194
76
+ 173,,1,snp,1,1,0.99763536
77
+ 365,9492179.0,0,gene,0,0,0.0035301214
78
+ 100,,0,snp,0,0,0.0092039425
79
+ 189,,1,snp,1,1,0.99828005
80
+ 225,86201.0,1,gene,1,1,0.9084783
81
+ 1627,2119041.0,1,chemical,1,1,0.9980451
82
+ 124,,1,snp,1,1,0.99759704
83
+ 140,,1,snp,1,1,0.99731725
84
+ 228,,1,snp,1,1,0.99832064
85
+ 613,7327289.0,0,chemical,0,0,0.0007666317
86
+ 109,,1,snp,1,1,0.99782526
87
+ 52,,1,snp,1,1,0.99370676
88
+ 69,,1,snp,1,1,0.99775
89
+ 53,,0,snp,0,0,0.01811918
90
+ 877,32963727.0,1,gene,1,1,0.99794585
91
+ 117,,1,snp,1,1,0.99760866
92
+ 19,,1,snp,1,1,0.9983931
93
+ 242,25955575.0,1,gene,1,1,0.9951416
94
+ 110,,1,snp,1,1,0.9977543
95
+ 875,32963727.0,1,gene,1,1,0.99652666
96
+ 1167,19854709.0,1,gene,1,1,0.99760675
97
+ 85,,0,snp,0,0,0.00097626523
98
+ 589,11127335.0,0,chemical,0,0,0.07949259
99
+ 1581,2119041.0,0,chemical,0,0,0.0026553466
100
+ 13,,1,snp,1,1,0.99852544
101
+ 49,,1,snp,1,1,0.9985152
102
+ 17,,1,snp,1,1,0.99842274
103
+ 1100,25972622.0,1,gene,0,1,0.038423777
104
+ 308,25955575.0,1,gene,1,1,0.9956377
105
+ 1606,137152.0,0,chemical,0,0,0.0011539139
106
+ 76,,1,snp,1,1,0.99720687
107
+ 79,,1,snp,1,1,0.9981887
108
+ 1252,10202351.0,1,gene,1,1,0.99092335
109
+ 1110,19854709.0,1,gene,1,1,0.99723107
110
+ 113,,1,snp,1,1,0.99762493
111
+ 146,,1,snp,1,1,0.9969535
112
+ 256,,1,snp,1,1,0.9983614
113
+ 224,,1,snp,1,1,0.998417
114
+ 168,,1,snp,1,1,0.9982969
115
+ 101,,1,snp,1,1,0.9986337
116
+ 1135,19854709.0,0,gene,0,0,0.116153486
117
+ 650,25872262.0,1,chemical,1,1,0.99492234
118
+ 80,,1,snp,1,1,0.99812716
119
+ 1414,19284577.0,1,gene,0,1,0.03133528
120
+ 218,1387863.0,1,gene,0,1,0.021376872
121
+ 81,,0,snp,0,0,0.0010098683
122
+ 5,,1,snp,1,1,0.9970498
123
+ 198,,1,snp,1,1,0.99854326
124
+ 545,23137103.0,0,chemical,0,0,0.009232358
125
+ 240,,0,snp,0,0,0.36754495
126
+ 170,,1,snp,1,1,0.9979564
127
+ 4,,1,snp,1,1,0.9976036
128
+ 398,33379851.0,0,gene,0,0,0.008327706
129
+ 236,,1,snp,1,1,0.99833894
130
+ 1164,19854709.0,1,gene,1,1,0.9982247
131
+ 242,,1,snp,1,1,0.99854076
132
+ 1105,6282727.0,1,gene,1,1,0.9943967
133
+ 129,,0,snp,0,0,0.0010068537
134
+ 44,,1,snp,1,1,0.99790347
135
+ 61,,1,snp,1,1,0.99842584
136
+ 155,,1,snp,1,1,0.9959001
137
+ 164,,1,snp,0,1,0.2519795
138
+ 116,,1,snp,1,1,0.9976004
139
+ 244,,1,snp,0,1,0.008245787
140
+ 226,,1,snp,1,1,0.9983132
141
+ 378,9492179.0,1,gene,1,1,0.9968541
142
+ 1617,2119041.0,0,chemical,0,0,0.0008725691
143
+ 217,,1,snp,1,1,0.9985262
144
+ 202,,1,snp,0,1,0.0070430655
145
+ 15,,0,snp,0,0,0.0010899558
146
+ 32,,1,snp,1,1,0.9982253
147
+ 729,3657385.0,0,chemical,0,0,0.014736311
148
+ 179,,1,snp,1,1,0.99840623
149
+ 239,1387863.0,0,gene,0,0,0.002570554
150
+ 8,27311750.0,0,gene,0,0,0.0007973129
151
+ 1513,21849.0,0,chemical,0,0,0.0010556666
152
+ 46,,1,snp,1,1,0.9983011
153
+ 1440,19284577.0,1,gene,0,1,0.043946814
154
+ 22,,0,snp,0,0,0.0010688133
155
+ 90,,0,snp,0,0,0.0010713296
156
+ 59,,1,snp,1,1,0.9984145
157
+ 171,,1,snp,1,1,0.9982272
158
+ 1157,6282727.0,1,gene,1,1,0.9945437
159
+ 166,,1,snp,0,1,0.018944217
160
+ 1407,24461398.0,0,gene,0,0,0.007946598
161
+ 66,,0,snp,0,0,0.017655196
162
+ 216,,1,snp,1,1,0.9984987
163
+ 567,28696084.0,0,chemical,0,0,0.0011113718
164
+ 973,34029455.0,1,chemical,1,1,0.99796957
165
+ 43,,1,snp,1,1,0.99790347
166
+ 1068,22346144.0,1,gene,1,1,0.9896798
167
+ 1572,219471.0,0,chemical,0,0,0.009620513
168
+ 1609,505679.0,1,chemical,0,1,0.010834697
169
+ 360,25955575.0,0,gene,0,0,0.0009928159
170
+ 422,3827191.0,1,chemical,0,1,0.12737437
171
+ 104,,1,snp,1,1,0.99774456
172
+ 102,20332649.0,0,chemical,0,0,0.0010625791
173
+ 160,,1,snp,1,1,0.9984175
174
+ 266,2460156.0,0,gene,0,0,0.0011074488
175
+ 88,,0,snp,0,0,0.0009817618
176
+ 1140,6282727.0,1,gene,1,1,0.9976993
177
+ 1290,12075765.0,1,gene,1,1,0.9973206
178
+ 258,21892537.0,1,gene,1,1,0.9980246
179
+ 633,10097296.0,0,chemical,0,0,0.00085973577
180
+ 98,,1,snp,1,1,0.9975485
181
+ 1183,19854709.0,1,gene,1,1,0.99383026
182
+ 193,,0,snp,0,0,0.0013955443
183
+ 150,,0,snp,1,0,0.9985643
184
+ 174,,1,snp,1,1,0.9976114
185
+ 343,2460156.0,0,gene,0,0,0.0017238822
186
+ 165,,1,snp,0,1,0.027675858
187
+ 230,,1,snp,1,1,0.9982444
188
+ 263,1639952.0,0,gene,0,0,0.010875411
189
+ 333,8595516.0,0,gene,0,0,0.0023546014
190
+ 1593,2119041.0,0,chemical,0,0,0.0020406041
191
+ 71,,1,snp,1,1,0.9977876
192
+ 1495,24932352.0,0,gene,0,0,0.018211804
193
+ 77,,1,snp,1,1,0.997242
194
+ 186,,1,snp,1,1,0.99824995
195
+ 1311,11507184.0,1,gene,0,1,0.24288213
196
+ 705,7327289.0,0,chemical,0,0,0.00076219335
197
+ 517,10783011.0,0,chemical,0,0,0.005260977
198
+ 341,12408500.0,0,gene,0,0,0.030036563
199
+ 1404,8875606.0,0,gene,0,0,0.014009026
200
+ 1615,505679.0,0,chemical,1,0,0.98618454
201
+ 1354,20634796.0,0,gene,1,0,0.9971481
202
+ 1589,2119041.0,0,chemical,0,0,0.002054027
203
+ 942,3944235.0,0,chemical,0,0,0.000725465
204
+ 163,,1,snp,1,1,0.53116965
205
+ 14,,0,snp,0,0,0.0010816739
206
+ 68,,1,snp,1,1,0.9985952
207
+ 1165,26662448.0,1,gene,1,1,0.99839336
208
+ 1475,28285650.0,1,gene,0,1,0.0132889915
209
+ 153,,1,snp,1,1,0.99777335
210
+ 208,3191497.0,0,chemical,0,0,0.001886813
211
+ 66,31531016.0,1,gene,1,1,0.9981658
212
+ 56,,1,snp,1,1,0.9985563
213
+ 617,1249291.0,0,chemical,0,0,0.048106194
214
+ 1575,2119041.0,0,chemical,0,0,0.0020750365
215
+ 16,,0,snp,0,0,0.0010911053
216
+ 1174,6282727.0,1,gene,1,1,0.9977012
217
+ 1303,10592468.0,1,gene,1,1,0.99502414
218
+ 1591,1949078.0,0,chemical,0,0,0.0022303225
219
+ 3,,0,snp,0,0,0.0026689882
220
+ 1576,2185556.0,1,chemical,1,1,0.9969656
221
+ 1253,23789315.0,1,gene,1,1,0.9981913
222
+ 816,32110099.0,1,gene,0,1,0.026931792
223
+ 1527,12546333.0,1,chemical,1,1,0.99111617
224
+ 10,,0,snp,0,0,0.001115026
225
+ 201,,1,snp,1,1,0.9986065
226
+ 1341,32765800.0,0,gene,0,0,0.010315469
227
+ 182,,0,snp,0,0,0.08657912
228
+ 58,,1,snp,1,1,0.99700373
229
+ 233,,1,snp,0,1,0.019162767
230
+ 1228,6282727.0,1,gene,1,1,0.9845636
231
+ 1071,5434266.0,0,gene,0,0,0.03163696
232
+ 194,,1,snp,1,1,0.9984553
233
+ 149,26549757.0,1,gene,1,1,0.99651414
234
+ 191,,0,snp,0,0,0.0013718421
235
+ 727,3657385.0,0,chemical,0,0,0.01613587
236
+ 161,,1,snp,1,1,0.99834394
237
+ 180,,1,snp,1,1,0.9984623
238
+ 1199,6785940.0,1,gene,1,1,0.997928
239
+ 183,,1,snp,1,1,0.9981343
240
+ 12,,1,snp,1,1,0.997387
241
+ 26,,1,snp,1,1,0.9982414
242
+ 31,,1,snp,1,1,0.9983494
243
+ 1173,6785940.0,0,gene,0,0,0.0008528401
244
+ 9,,0,snp,0,0,0.0011327487
245
+ 200,,1,snp,1,1,0.99852943
246
+ 1125,26662448.0,0,gene,0,0,0.0009377104
247
+ 1069,1121656.0,0,gene,0,0,0.0017049393
248
+ 1286,2445464.0,0,gene,0,0,0.036398884
249
+ 1364,8875606.0,0,gene,0,0,0.011716296
250
+ 1584,2119041.0,0,chemical,0,0,0.0072589903
251
+ 1586,2185556.0,1,chemical,1,1,0.99087256
252
+ 1574,505679.0,0,chemical,0,0,0.0067407098
253
+ 142,26549757.0,0,gene,0,0,0.012340109
254
+ 120,,1,snp,1,1,0.99766374
255
+ 137,,0,snp,0,0,0.004080062
256
+ 41,,1,snp,1,1,0.9979741
257
+ 89,,0,snp,0,0,0.0009721256
258
+ 456,361463.0,1,chemical,1,1,0.9972149
259
+ 233,1387863.0,0,gene,0,0,0.000871371
260
+ 25,,1,snp,1,1,0.99808705
261
+ 1082,6282727.0,1,gene,0,1,0.007542282
262
+ 1520,33255333.0,1,chemical,1,1,0.9805603
263
+ 82,,0,snp,0,0,0.0009774207
264
+ 8,,1,snp,1,1,0.99729437
265
+ 1293,2877044.0,0,gene,0,0,0.022820197
266
+ 34,,0,snp,0,0,0.0014848107
267
+ 187,,1,snp,1,1,0.99832565
268
+ 1267,23789315.0,1,gene,1,1,0.99761873
269
+ 237,,1,snp,1,1,0.99858606
270
+ 1211,11305577.0,1,gene,1,1,0.99794
271
+ 211,,1,snp,1,1,0.99862456
272
+ 199,,1,snp,1,1,0.9985134
273
+ 339,15255457.0,0,gene,0,0,0.004278052
274
+ 1012,565407.0,0,chemical,0,0,0.00078660046
275
+ 251,,1,snp,1,1,0.9682569
276
+ 221,,0,snp,1,0,0.99658257
277
+ 188,,1,snp,1,1,0.99815315
278
+ 36,,1,snp,1,1,0.99837923
279
+ 1605,1949078.0,0,chemical,0,0,0.008377212
280
+ 192,,0,snp,0,0,0.0013627969
281
+ 1519,978865.0,0,chemical,0,0,0.00095085497
282
+ 1021,14279132.0,0,chemical,0,0,0.010844689
283
+ 254,,1,snp,1,1,0.9984915
284
+ 139,,1,snp,1,1,0.9979479
285
+ 67,,1,snp,1,1,0.9985435
286
+ 1532,20190315.0,0,chemical,0,0,0.34677017
287
+ 219,,1,snp,1,1,0.99731845
288
+ 181,,0,snp,0,0,0.10709811
289
+ 102,,1,snp,1,1,0.9986197
290
+ 18,,0,snp,0,0,0.0103617385
291
+ 62,,1,snp,1,1,0.99848026
292
+ 115,19708783.0,1,chemical,1,1,0.996166
293
+ 134,,1,snp,1,1,0.9984243
294
+ 96,,1,snp,1,1,0.99759173
295
+ 138,,1,snp,1,1,0.9982041
296
+ 40,,1,snp,1,1,0.99813336
297
+ 1240,10202351.0,1,gene,1,1,0.971227
298
+ 119,26549757.0,0,gene,0,0,0.0009522979
299
+ 1510,738363.0,0,chemical,0,0,0.0013732258
300
+ 122,,1,snp,1,1,0.9976533
301
+ 115,,1,snp,1,1,0.9976641
302
+ 702,6385637.0,0,chemical,0,0,0.0062638116
303
+ 1128,22719969.0,1,gene,1,1,0.99729294
304
+ 1000,32976513.0,1,chemical,1,1,0.9954733
305
+ 372,9492179.0,1,gene,1,1,0.9846496
306
+ 20,,1,snp,1,1,0.9982925
307
+ 1224,1121656.0,0,gene,0,0,0.0013971366
308
+ 151,,1,snp,1,1,0.9980969
309
+ 1387,23449040.0,0,gene,0,0,0.010203168
310
+ 229,,1,snp,1,1,0.99825805
311
+ 716,20965160.0,0,chemical,1,0,0.9710508
312
+ 135,,1,snp,1,1,0.9984231
313
+ 208,,1,snp,0,1,0.0012963816
314
+ 97,,1,snp,1,1,0.99720263
315
+ 218,,0,snp,0,0,0.0077906437
316
+ 381,22173610.0,1,gene,1,1,0.99811614
317
+ 406,633053.0,1,chemical,0,1,0.032481648
318
+ 149,,0,snp,0,0,0.015216321
319
+ 304,12408500.0,1,gene,1,1,0.99798155
320
+ 255,25955575.0,0,gene,0,0,0.0029044927
321
+ 248,,1,snp,1,1,0.99821246
322
+ 443,944754.0,0,chemical,0,0,0.0007743879
323
+ 1400,17184595.0,0,gene,1,0,0.99674267
324
+ 1538,12207816.0,1,chemical,1,1,0.9970682
325
+ 1521,191454.0,0,chemical,0,0,0.00288762
326
+ 87,,0,snp,0,0,0.0010281163
327
+ 941,16938113.0,0,chemical,0,0,0.008812375
328
+ 1346,23449040.0,1,gene,1,1,0.995436
329
+ 14,27311750.0,1,gene,1,1,0.99688953
330
+ 1058,6282727.0,1,gene,1,1,0.95031005
331
+ 1053,22425648.0,0,gene,0,0,0.025243083
332
+ 530,8440822.0,1,chemical,1,1,0.9891633
333
+ 1008,25368272.0,0,chemical,0,0,0.00389555
334
+ 162,,1,snp,1,1,0.9982882
335
+ 123,,1,snp,1,1,0.9976299
336
+ 172,,1,snp,1,1,0.998281
337
+ 0,,0,snp,0,0,0.0073459446
338
+ 1600,2119041.0,0,chemical,0,0,0.0008544107
339
+ 1067,6282727.0,0,gene,0,0,0.036912847
340
+ 1388,23432377.0,0,gene,0,0,0.006744127
341
+ 611,7967338.0,0,chemical,0,0,0.012795771
342
+ 99,,0,snp,0,0,0.013128935
343
+ 234,,1,snp,1,1,0.99812156
344
+ 691,15654121.0,0,chemical,0,0,0.004715741
345
+ 107,19708783.0,0,chemical,0,0,0.001388633
346
+ 104,19708783.0,0,chemical,0,0,0.0014446098
347
+ 1518,21849.0,0,chemical,0,0,0.0011226465
348
+ 204,,1,snp,0,1,0.001285098
349
+ 632,7418953.0,1,chemical,1,1,0.9956333
350
+ 196,,1,snp,1,1,0.9985415
351
+ 20,27311750.0,0,gene,0,0,0.0008129195
352
+ 45,,1,snp,1,1,0.9980471
353
+ 222,,0,snp,1,0,0.99613744
354
+ 624,26758950.0,0,chemical,1,0,0.9879198
355
+ 215,,0,snp,0,0,0.010319932
356
+ 259,,1,snp,1,1,0.9983329
357
+ 241,9492179.0,1,gene,1,1,0.96690416
358
+ 70,,1,snp,1,1,0.99830496
359
+ 350,8595516.0,1,gene,1,1,0.99647516
360
+ 212,,0,snp,0,0,0.010952162
361
+ 1614,505679.0,0,chemical,0,0,0.17437609
362
+ 7,,1,snp,1,1,0.99795246
363
+ 1250,24354574.0,0,gene,0,0,0.0076042754
364
+ 947,3944235.0,0,chemical,0,0,0.00073146855
365
+ 29,,1,snp,1,1,0.99493474
366
+ 206,,1,snp,0,1,0.0012709402
367
+ 1236,1688495.0,0,gene,1,0,0.9570458
368
+ 235,,1,snp,1,1,0.9981785
369
+ 539,23137103.0,0,chemical,0,0,0.011219417
370
+ 136,,0,snp,0,0,0.004053722
371
+ 114,,1,snp,1,1,0.99770004
372
+ 176,,1,snp,1,1,0.99827456
373
+ 128,,0,snp,0,0,0.0010170519
374
+ 147,,0,snp,0,0,0.015269759
375
+ 1353,32765800.0,0,gene,0,0,0.009814553
376
+ 126,,1,snp,1,1,0.99757105
377
+ 64,,1,snp,1,1,0.99822813
378
+ 223,,0,snp,1,0,0.9955647
379
+ 47,,1,snp,1,1,0.99845564
380
+ 175,,1,snp,1,1,0.99805605
381
+ 154,,0,snp,0,0,0.0009248397
382
+ 125,,1,snp,1,1,0.99758124
383
+ 1377,23432377.0,0,gene,0,0,0.0066935485
384
+ 37,,1,snp,1,1,0.9980648
385
+ 148,,1,snp,1,1,0.9952369
386
+ 111,,1,snp,1,1,0.9976732
387
+ 203,,1,snp,0,1,0.001382557
388
+ 92,,0,snp,0,0,0.0010325694
389
+ 1,,1,snp,1,1,0.9981273
390
+ 258,,1,snp,1,1,0.99832565
391
+ 86,,0,snp,0,0,0.000968463
392
+ 105,,1,snp,1,1,0.99770147
393
+ 214,,0,snp,0,0,0.010535865
394
+ 1092,26662448.0,1,gene,0,1,0.0024177316
395
+ 352,25955575.0,0,gene,0,0,0.0028747767
396
+ 169,,1,snp,1,1,0.99803156
397
+ 243,,1,snp,1,1,0.9985684
398
+ 107,,1,snp,1,1,0.9977527
399
+ 21,,0,snp,0,0,0.0011189982
400
+ 465,15070921.0,1,chemical,1,1,0.87360924
401
+ 535,17640959.0,0,chemical,0,0,0.0038240042
402
+ 33,,0,snp,0,0,0.0015749751
403
+ 108,,1,snp,1,1,0.9977016
404
+ 35,,1,snp,1,1,0.9985551
405
+ 731,15070921.0,1,chemical,0,1,0.07648843
406
+ 316,8595516.0,1,gene,1,1,0.99722266
407
+ 209,,0,snp,0,0,0.0011487266
408
+ 247,,1,snp,1,1,0.9983126
409
+ 74,,1,snp,1,1,0.9980636
410
+ 240,1387863.0,0,gene,0,0,0.11285984
411
+ 683,24047919.0,0,chemical,1,0,0.9953518
412
+ 253,,1,snp,1,1,0.98553073
413
+ 103,,1,snp,1,1,0.99859816
414
+ 1127,25972622.0,0,gene,0,0,0.0010634485
415
+ 312,12408500.0,1,gene,1,1,0.99828327
416
+ 1221,23443801.0,0,gene,0,0,0.002070226
417
+ 156,,1,snp,1,1,0.9938718
418
+ 241,,0,snp,1,0,0.9855182
419
+ 232,,1,snp,0,1,0.019162767
420
+ 75,,1,snp,1,1,0.99728584
421
+ 311,8595516.0,0,gene,0,0,0.002562329
422
+ 1370,6781935.0,0,gene,0,0,0.048832625
423
+ 227,,1,snp,1,1,0.99839395
424
+ 246,,0,snp,0,0,0.007487445
425
+ 354,12408500.0,0,gene,0,0,0.009314935
426
+ 932,16938113.0,0,chemical,0,0,0.008066432
427
+ 48,,1,snp,1,1,0.9985152
428
+ 1620,505679.0,1,chemical,1,1,0.69080824
429
+ 1196,22719969.0,1,gene,1,1,0.98762274
430
+ 197,,1,snp,1,1,0.9985259
431
+ 1055,23443801.0,0,gene,0,0,0.0012827135
432
+ 152,26549757.0,0,gene,0,0,0.0056222645
433
+ 144,26549757.0,0,gene,0,0,0.029583132
434
+ 1296,2445464.0,0,gene,0,0,0.020274434
435
+ 212,1387863.0,0,gene,0,0,0.013890155
436
+ 642,10097296.0,0,chemical,0,0,0.00084846676
437
+ 714,17388667.0,0,chemical,1,0,0.9967861
438
+ 950,10940758.0,1,chemical,1,1,0.99833065
439
+ 28,,1,snp,1,1,0.9980556
440
+ 93,,1,snp,1,1,0.9983228
441
+ 131,,0,snp,0,0,0.0009902361
442
+ 1610,2119041.0,0,chemical,0,0,0.00088727503
443
+ 205,,0,snp,0,0,0.0014070247
444
+ 141,,0,snp,0,0,0.0061639627
445
+ 185,,1,snp,1,1,0.9981274
446
+ 215,1387863.0,0,gene,0,0,0.0008823091
447
+ 1214,11305577.0,0,gene,0,0,0.003108125
448
+ 245,,0,snp,0,0,0.007587611
449
+ 231,,1,snp,1,1,0.9985336
450
+ 272,21892537.0,0,gene,0,0,0.0025534688
451
+ 133,,1,snp,1,1,0.99819833
452
+ 130,,0,snp,0,0,0.0010278319
453
+ 144,,1,snp,1,1,0.9980326
454
+ 1327,9156046.0,0,gene,1,0,0.908495
455
+ 167,,1,snp,1,1,0.9985241
456
+ 626,29182708.0,0,chemical,0,0,0.0057991273
457
+ 1340,24461398.0,0,gene,0,0,0.00848538
458
+ 25,31531016.0,1,gene,1,1,0.9513689
459
+ 1625,2119041.0,0,chemical,0,0,0.0008764421
460
+ 250,,1,snp,1,1,0.9981651
461
+ 1571,2119041.0,0,chemical,0,0,0.0034357945
462
+ 262,25955575.0,1,gene,1,1,0.9958514
463
+ 11,,0,snp,0,0,0.0011545292
464
+ 30,,1,snp,1,1,0.99854374
465
+ 119,,1,snp,1,1,0.997563
466
+ 379,12408500.0,0,gene,0,0,0.008583972
467
+ 55,,1,snp,1,1,0.9982382
468
+ 112,,1,snp,1,1,0.99757105
469
+ 63,,1,snp,1,1,0.99608576
470
+ 177,,1,snp,1,1,0.9977342
471
+ 159,,1,snp,1,1,0.99391913
472
+ 152,,1,snp,1,1,0.9982242
473
+ 94,,0,snp,0,0,0.0057391943
474
+ 27,,1,snp,1,1,0.99718446
475
+ 42,,1,snp,1,1,0.9980471
476
+ 1561,23634877.0,0,chemical,0,0,0.010058354
477
+ 23,,0,snp,0,0,0.0011321948
478
+ 232,1387863.0,0,gene,0,0,0.0008602344
479
+ 57,,1,snp,1,1,0.9985801
480
+ 103,19708783.0,1,chemical,1,1,0.99697137
481
+ 287,1639952.0,0,gene,0,0,0.011831108
482
+ 1356,25494133.0,0,gene,0,0,0.008904009
483
+ 302,25955575.0,1,gene,1,1,0.9886479
484
+ 145,,0,snp,0,0,0.017959228
485
+ 1203,19854709.0,1,gene,1,1,0.9947377
486
+ 106,,1,snp,1,1,0.99775726
487
+ 24,,0,snp,0,0,0.0010800286
488
+ 970,18390427.0,0,chemical,0,0,0.01282128
489
+ 1371,25494133.0,0,gene,0,0,0.008426122
490
+ 277,25955575.0,0,gene,1,0,0.9877243
491
+ 157,,1,snp,1,1,0.99274445
492
+ 60,,1,snp,1,1,0.9985929
493
+ 190,,1,snp,1,1,0.99806374
494
+ 238,,1,snp,1,1,0.9985618
predict_results/test_results.txt ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
1
+ test_loss = 0.4027480185031891
2
+ test_precision = 0.9384057971014492
3
+ test_recall = 0.9055944055944056
4
+ test_f1 = 0.9217081850533808
5
+ test_accuracy = 0.9107505070993914
6
+ test_auc = 0.9577716969021316
7
+ test_runtime = 1.8089
8
+ test_samples_per_second = 272.546
9
+ test_steps_per_second = 17.138
predict_results/test_results_chemical.txt ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
1
+ precision = 0.7692307692307693
2
+ recall = 0.8333333333333334
3
+ f1 = 0.8
4
+ accuracy = 0.8947368421052632
5
+ auc = 0.95481220657277
predict_results/test_results_gene.txt ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
1
+ precision = 0.9047619047619048
2
+ recall = 0.8507462686567164
3
+ f1 = 0.8769230769230769
4
+ accuracy = 0.8840579710144928
5
+ auc = 0.9409291570317427
predict_results/test_results_snp.txt ADDED
@@ -0,0 +1,5 @@
 
 
 
 
 
1
+ precision = 0.9732620320855615
2
+ recall = 0.9333333333333333
3
+ f1 = 0.9528795811518325
4
+ accuracy = 0.9307692307692308
5
+ auc = 0.9596055226824458
pytorch_model.bin CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:046e9a1bc449563c0ed7fa42bf9e85311617e564f9c3998ddfa91de114edf701
3
  size 438019245
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:50108cce9b18c9cd960318839ac5118cd41f06091f8cfe8cab92f49fef57f8bb
3
  size 438019245