End of training
Browse files
eval_results.txt
ADDED
@@ -0,0 +1,10 @@
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1 |
+
eval_loss = 0.4027480185031891
|
2 |
+
eval_precision = 0.9384057971014492
|
3 |
+
eval_recall = 0.9055944055944056
|
4 |
+
eval_f1 = 0.9217081850533808
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5 |
+
eval_accuracy = 0.9107505070993914
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6 |
+
eval_auc = 0.9577716969021316
|
7 |
+
eval_runtime = 1.8908
|
8 |
+
eval_samples_per_second = 260.739
|
9 |
+
eval_steps_per_second = 16.395
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10 |
+
epoch = 6.0
|
predict_results/test_predictions.csv
ADDED
@@ -0,0 +1,494 @@
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1 |
+
,pmid,label,markerType,prediction,label_binary,proba
|
2 |
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124,26549757.0,1,gene,1,1,0.99678373
|
3 |
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77,11839404.0,0,chemical,0,0,0.0009486322
|
4 |
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83,,0,snp,0,0,0.0009716418
|
5 |
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252,,1,snp,1,1,0.98575354
|
6 |
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356,15255457.0,1,gene,1,1,0.998116
|
7 |
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50,,1,snp,1,1,0.9983633
|
8 |
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54,,1,snp,1,1,0.9982697
|
9 |
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334,9492179.0,0,gene,0,0,0.0011773536
|
10 |
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298,25955575.0,1,gene,1,1,0.99654263
|
11 |
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1567,505679.0,0,chemical,0,0,0.0069562816
|
12 |
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84,,0,snp,0,0,0.0010119139
|
13 |
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1179,26662448.0,1,gene,1,1,0.9980903
|
14 |
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143,26549757.0,0,gene,0,0,0.01229192
|
15 |
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95,,1,snp,1,1,0.9984964
|
16 |
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238,1387863.0,1,gene,1,1,0.996837
|
17 |
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91,,0,snp,0,0,0.001031882
|
18 |
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281,9492179.0,0,gene,0,0,0.0011298981
|
19 |
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257,,1,snp,1,1,0.99841475
|
20 |
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969,18390427.0,0,chemical,0,0,0.00669539
|
21 |
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1143,6282727.0,0,gene,0,0,0.021560915
|
22 |
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1194,26662448.0,1,gene,1,1,0.9983596
|
23 |
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926,10731506.0,1,chemical,1,1,0.9873147
|
24 |
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288,22173610.0,1,gene,1,1,0.9981724
|
25 |
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143,,0,snp,0,0,0.006273734
|
26 |
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687,7327289.0,0,chemical,0,0,0.000773981
|
27 |
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112,20332649.0,0,chemical,1,0,0.94282645
|
28 |
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225,,1,snp,1,1,0.9983741
|
29 |
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73,,1,snp,1,1,0.99674463
|
30 |
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249,,1,snp,1,1,0.99859005
|
31 |
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51,,1,snp,1,1,0.99706703
|
32 |
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869,32963727.0,1,gene,1,1,0.9968124
|
33 |
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207,,1,snp,0,1,0.0012376935
|
34 |
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106,20332649.0,0,chemical,0,0,0.001069815
|
35 |
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178,,1,snp,1,1,0.9977081
|
36 |
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1583,2119041.0,0,chemical,0,0,0.002064074
|
37 |
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142,,0,snp,0,0,0.005320617
|
38 |
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328,12408500.0,1,gene,1,1,0.99765956
|
39 |
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220,,1,snp,1,1,0.9976342
|
40 |
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78,,1,snp,1,1,0.99733174
|
41 |
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239,,1,snp,1,1,0.98719066
|
42 |
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2,,1,snp,1,1,0.997355
|
43 |
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607,11127335.0,0,chemical,0,0,0.061519418
|
44 |
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1460,19284577.0,1,gene,0,1,0.02922975
|
45 |
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127,,1,snp,1,1,0.9978416
|
46 |
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118,,1,snp,1,1,0.99786913
|
47 |
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6,,1,snp,1,1,0.99735487
|
48 |
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217,1387863.0,0,gene,0,0,0.23090306
|
49 |
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1159,19854709.0,0,gene,0,0,0.0009471555
|
50 |
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|
51 |
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309,21892537.0,1,gene,1,1,0.8517625
|
52 |
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158,,1,snp,1,1,0.99030113
|
53 |
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|
54 |
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414,1568728.0,1,chemical,1,1,0.99547356
|
55 |
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|
56 |
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|
57 |
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255,,1,snp,1,1,0.99837446
|
58 |
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72,,1,snp,1,1,0.9964851
|
59 |
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|
60 |
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|
61 |
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42,31531016.0,1,gene,1,1,0.9969574
|
62 |
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327,2460156.0,0,gene,0,0,0.01142349
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63 |
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116,28921461.0,0,chemical,0,0,0.001057169
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66 |
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|
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|
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70 |
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72 |
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|
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78 |
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80 |
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225,86201.0,1,gene,1,1,0.9084783
|
81 |
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1627,2119041.0,1,chemical,1,1,0.9980451
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82 |
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|
83 |
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84 |
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85 |
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613,7327289.0,0,chemical,0,0,0.0007666317
|
86 |
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109,,1,snp,1,1,0.99782526
|
87 |
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52,,1,snp,1,1,0.99370676
|
88 |
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69,,1,snp,1,1,0.99775
|
89 |
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53,,0,snp,0,0,0.01811918
|
90 |
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877,32963727.0,1,gene,1,1,0.99794585
|
91 |
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117,,1,snp,1,1,0.99760866
|
92 |
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19,,1,snp,1,1,0.9983931
|
93 |
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242,25955575.0,1,gene,1,1,0.9951416
|
94 |
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110,,1,snp,1,1,0.9977543
|
95 |
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875,32963727.0,1,gene,1,1,0.99652666
|
96 |
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1167,19854709.0,1,gene,1,1,0.99760675
|
97 |
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85,,0,snp,0,0,0.00097626523
|
98 |
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589,11127335.0,0,chemical,0,0,0.07949259
|
99 |
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1581,2119041.0,0,chemical,0,0,0.0026553466
|
100 |
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13,,1,snp,1,1,0.99852544
|
101 |
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49,,1,snp,1,1,0.9985152
|
102 |
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17,,1,snp,1,1,0.99842274
|
103 |
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1100,25972622.0,1,gene,0,1,0.038423777
|
104 |
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308,25955575.0,1,gene,1,1,0.9956377
|
105 |
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1606,137152.0,0,chemical,0,0,0.0011539139
|
106 |
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76,,1,snp,1,1,0.99720687
|
107 |
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79,,1,snp,1,1,0.9981887
|
108 |
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1252,10202351.0,1,gene,1,1,0.99092335
|
109 |
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1110,19854709.0,1,gene,1,1,0.99723107
|
110 |
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113,,1,snp,1,1,0.99762493
|
111 |
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146,,1,snp,1,1,0.9969535
|
112 |
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256,,1,snp,1,1,0.9983614
|
113 |
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224,,1,snp,1,1,0.998417
|
114 |
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168,,1,snp,1,1,0.9982969
|
115 |
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101,,1,snp,1,1,0.9986337
|
116 |
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1135,19854709.0,0,gene,0,0,0.116153486
|
117 |
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650,25872262.0,1,chemical,1,1,0.99492234
|
118 |
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80,,1,snp,1,1,0.99812716
|
119 |
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1414,19284577.0,1,gene,0,1,0.03133528
|
120 |
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218,1387863.0,1,gene,0,1,0.021376872
|
121 |
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81,,0,snp,0,0,0.0010098683
|
122 |
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5,,1,snp,1,1,0.9970498
|
123 |
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198,,1,snp,1,1,0.99854326
|
124 |
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545,23137103.0,0,chemical,0,0,0.009232358
|
125 |
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240,,0,snp,0,0,0.36754495
|
126 |
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170,,1,snp,1,1,0.9979564
|
127 |
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4,,1,snp,1,1,0.9976036
|
128 |
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398,33379851.0,0,gene,0,0,0.008327706
|
129 |
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236,,1,snp,1,1,0.99833894
|
130 |
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1164,19854709.0,1,gene,1,1,0.9982247
|
131 |
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242,,1,snp,1,1,0.99854076
|
132 |
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1105,6282727.0,1,gene,1,1,0.9943967
|
133 |
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129,,0,snp,0,0,0.0010068537
|
134 |
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44,,1,snp,1,1,0.99790347
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135 |
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61,,1,snp,1,1,0.99842584
|
136 |
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155,,1,snp,1,1,0.9959001
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137 |
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164,,1,snp,0,1,0.2519795
|
138 |
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116,,1,snp,1,1,0.9976004
|
139 |
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244,,1,snp,0,1,0.008245787
|
140 |
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226,,1,snp,1,1,0.9983132
|
141 |
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378,9492179.0,1,gene,1,1,0.9968541
|
142 |
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1617,2119041.0,0,chemical,0,0,0.0008725691
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143 |
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217,,1,snp,1,1,0.9985262
|
144 |
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202,,1,snp,0,1,0.0070430655
|
145 |
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15,,0,snp,0,0,0.0010899558
|
146 |
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32,,1,snp,1,1,0.9982253
|
147 |
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729,3657385.0,0,chemical,0,0,0.014736311
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148 |
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179,,1,snp,1,1,0.99840623
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149 |
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239,1387863.0,0,gene,0,0,0.002570554
|
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|
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1513,21849.0,0,chemical,0,0,0.0010556666
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46,,1,snp,1,1,0.9983011
|
153 |
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1440,19284577.0,1,gene,0,1,0.043946814
|
154 |
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22,,0,snp,0,0,0.0010688133
|
155 |
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90,,0,snp,0,0,0.0010713296
|
156 |
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59,,1,snp,1,1,0.9984145
|
157 |
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171,,1,snp,1,1,0.9982272
|
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311,8595516.0,0,gene,0,0,0.002562329
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|
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|
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932,16938113.0,0,chemical,0,0,0.008066432
|
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48,,1,snp,1,1,0.9985152
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428 |
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1620,505679.0,1,chemical,1,1,0.69080824
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429 |
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1196,22719969.0,1,gene,1,1,0.98762274
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1055,23443801.0,0,gene,0,0,0.0012827135
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152,26549757.0,0,gene,0,0,0.0056222645
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642,10097296.0,0,chemical,0,0,0.00084846676
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714,17388667.0,0,chemical,1,0,0.9967861
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438 |
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950,10940758.0,1,chemical,1,1,0.99833065
|
439 |
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28,,1,snp,1,1,0.9980556
|
440 |
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93,,1,snp,1,1,0.9983228
|
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131,,0,snp,0,0,0.0009902361
|
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1610,2119041.0,0,chemical,0,0,0.00088727503
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|
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|
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|
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|
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|
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|
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|
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|
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1327,9156046.0,0,gene,1,0,0.908495
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|
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262,25955575.0,1,gene,1,1,0.9958514
|
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|
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|
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379,12408500.0,0,gene,0,0,0.008583972
|
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|
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|
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|
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|
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|
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152,,1,snp,1,1,0.9982242
|
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94,,0,snp,0,0,0.0057391943
|
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27,,1,snp,1,1,0.99718446
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|
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|
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|
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|
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|
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24,,0,snp,0,0,0.0010800286
|
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|
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277,25955575.0,0,gene,1,0,0.9877243
|
491 |
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157,,1,snp,1,1,0.99274445
|
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60,,1,snp,1,1,0.9985929
|
493 |
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190,,1,snp,1,1,0.99806374
|
494 |
+
238,,1,snp,1,1,0.9985618
|
predict_results/test_results.txt
ADDED
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
test_loss = 0.4027480185031891
|
2 |
+
test_precision = 0.9384057971014492
|
3 |
+
test_recall = 0.9055944055944056
|
4 |
+
test_f1 = 0.9217081850533808
|
5 |
+
test_accuracy = 0.9107505070993914
|
6 |
+
test_auc = 0.9577716969021316
|
7 |
+
test_runtime = 1.8089
|
8 |
+
test_samples_per_second = 272.546
|
9 |
+
test_steps_per_second = 17.138
|
predict_results/test_results_chemical.txt
ADDED
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
precision = 0.7692307692307693
|
2 |
+
recall = 0.8333333333333334
|
3 |
+
f1 = 0.8
|
4 |
+
accuracy = 0.8947368421052632
|
5 |
+
auc = 0.95481220657277
|
predict_results/test_results_gene.txt
ADDED
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
precision = 0.9047619047619048
|
2 |
+
recall = 0.8507462686567164
|
3 |
+
f1 = 0.8769230769230769
|
4 |
+
accuracy = 0.8840579710144928
|
5 |
+
auc = 0.9409291570317427
|
predict_results/test_results_snp.txt
ADDED
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
precision = 0.9732620320855615
|
2 |
+
recall = 0.9333333333333333
|
3 |
+
f1 = 0.9528795811518325
|
4 |
+
accuracy = 0.9307692307692308
|
5 |
+
auc = 0.9596055226824458
|
pytorch_model.bin
CHANGED
@@ -1,3 +1,3 @@
|
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
-
oid sha256:
|
3 |
size 438019245
|
1 |
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:50108cce9b18c9cd960318839ac5118cd41f06091f8cfe8cab92f49fef57f8bb
|
3 |
size 438019245
|