{ "lang":"en", "name":"sdoh_roberta_cui", "version":"0.0.0", "description":"CNN based Social determinants of health NER with a fine-grained window context bag-of-words classifier and a standard ontology extension interface (SNOMED_CT and CUI)", "author":"Dima Lituiev", "email":"d.lituiev@gmail.com", "url":"", "license":"", "spacy_version":">=3.2.1,<3.3.0", "spacy_git_version":"800737b41", "vectors":{ "width":0, "vectors":0, "keys":0, "name":null }, "labels":{ "transformer":[ ], "ner":[ "Anxiety: GAD", "Anxiety: Generalized Anxiety Disorder", "Anxiety: Level of anxiety", "Anxiety: NA", "Anxiety: Signs and symptoms of anxiety", "Anxiety: family hx: Anxiety state", "Anxiety: hx of anxiety state", "Depression: Family hx: Depression", "Depression: Major depressive disorder", "Depression: NA", "Depression: PHQ", "Depression: Symptoms of depression", "Depression: hx of Depression", "Financial_strain: Financial problem", "Financial_strain: Financially secure", "Financial_strain: NA", "Financial_strain: Unable to afford medication", "Food: Able to obtain food", "Food: Fruit and vegetable intake", "Food: NA", "Housing: Homeless", "Housing: Housing unsuited to needs", "Housing: Marginally housed", "Housing: NA", "Housing: Stably housed", "Housing: Subsidized housing", "Housing: lives in facility", "Insurance_status: Inadequate healthcare resources", "Insurance_status: NA", "Marital_or_partnership_status: Divorced", "Marital_or_partnership_status: Engaged to be married", "Marital_or_partnership_status: Married", "Marital_or_partnership_status: NA", "Marital_or_partnership_status: Partner", "Marital_or_partnership_status: Partner relationship problem", "Marital_or_partnership_status: Separated", "Marital_or_partnership_status: Single person", "Marital_or_partnership_status: Widowed", "Social_isolation: At risk for loneliness", "Social_isolation: Has social support", "Social_isolation: Lives alone", "Social_isolation: Lives with", "Social_isolation: NA", "Social_isolation: Personal relationship breakdown", "Social_isolation: Social Isolation", "Transportation: Has access to a car", "Transportation: Has access to public transport vehicle", "Transportation: NA", "Transportation: Transportation problems", "pain_and_disability: NA", "pain_and_disability: Pain intensity rating scale, current", "pain_and_disability: Pain intensity rating scale, worst" ] }, "pipeline":[ "transformer", "ner", "sdoh_cui" ], "components":[ "transformer", "ner", "sdoh_cui" ], "disabled":[ ], "performance":{ "ents_f":0.7764060357, "ents_p":0.8016997167, "ents_r":0.7526595745, "ents_per_type":{ "Marital_or_partnership_status: Divorced":{ "p":0.92, "r":0.7666666667, "f":0.8363636364 }, "Marital_or_partnership_status: Single person":{ "p":0.9850746269, "r":1.0, "f":0.992481203 }, "Social_isolation: Lives alone":{ "p":0.875, "r":0.7777777778, "f":0.8235294118 }, "Social_isolation: Has social support":{ "p":0.5740740741, "r":0.4246575342, "f":0.4881889764 }, "Housing: Stably housed":{ "p":0.6612903226, "r":0.6949152542, "f":0.6776859504 }, "pain_and_disability: NA":{ "p":0.8622754491, "r":0.9536423841, "f":0.9056603774 }, "pain_and_disability: Pain intensity rating scale, current":{ "p":1.0, "r":0.7586206897, "f":0.862745098 }, "pain_and_disability: Pain intensity rating scale, worst":{ "p":0.7586206897, "r":0.6285714286, "f":0.6875 }, "Marital_or_partnership_status: Married":{ "p":0.9136690647, "r":0.9007092199, "f":0.9071428571 }, "Anxiety: hx of anxiety state":{ "p":0.8305084746, "r":0.8305084746, "f":0.8305084746 }, "Depression: hx of Depression":{ "p":0.8591549296, "r":0.7721518987, "f":0.8133333333 }, "Marital_or_partnership_status: Partner":{ "p":0.95, "r":0.9047619048, "f":0.9268292683 }, "Social_isolation: Lives with":{ "p":0.8409090909, "r":0.880952381, "f":0.8604651163 }, "Depression: Major depressive disorder":{ "p":0.4, "r":0.2, "f":0.2666666667 }, "Depression: Symptoms of depression":{ "p":0.6447368421, "r":0.7903225806, "f":0.7101449275 }, "Anxiety: Signs and symptoms of anxiety":{ "p":0.72, "r":0.8571428571, "f":0.7826086957 }, "Depression: NA":{ "p":0.0, "r":0.0, "f":0.0 }, "Marital_or_partnership_status: Separated":{ "p":0.0, "r":0.0, "f":0.0 }, "Anxiety: NA":{ "p":0.6666666667, "r":0.9333333333, "f":0.7777777778 }, "Social_isolation: NA":{ "p":0.0, "r":0.0, "f":0.0 }, "Anxiety: family hx: Anxiety state":{ "p":1.0, "r":1.0, "f":1.0 }, "Depression: Family hx: Depression":{ "p":0.875, "r":0.7777777778, "f":0.8235294118 }, "Marital_or_partnership_status: Widowed":{ "p":0.7428571429, "r":0.7222222222, "f":0.7323943662 }, "Food: Provision of food":{ "p":0.0, "r":0.0, "f":0.0 }, "Anxiety: Generalized Anxiety Disorder":{ "p":0.2, "r":0.25, "f":0.2222222222 }, "Financial_strain: NA":{ "p":0.0, "r":0.0, "f":0.0 }, "Insurance_status: Inadequate healthcare resources":{ "p":0.0, "r":0.0, "f":0.0 }, "Insurance_status: NA":{ "p":0.0, "r":0.0, "f":0.0 }, "Marital_or_partnership_status: NA":{ "p":0.0, "r":0.0, "f":0.0 }, "Transportation: Has access to a car":{ "p":0.5, "r":0.2222222222, "f":0.3076923077 }, "Anxiety: GAD-7":{ "p":0.0, "r":0.0, "f":0.0 }, "Depression: PHQ-9":{ "p":0.0, "r":0.0, "f":0.0 }, "Financial_strain: Financial problem":{ "p":0.0, "r":0.0, "f":0.0 }, "Housing: Housing unsuited to needs":{ "p":0.0, "r":0.0, "f":0.0 }, "Housing: Subsidized housing":{ "p":0.0, "r":0.0, "f":0.0 }, "Social_isolation: At risk for loneliness":{ "p":0.0, "r":0.0, "f":0.0 }, "Marital_or_partnership_status: Engaged to be married":{ "p":1.0, "r":0.5, "f":0.6666666667 }, "Financial_strain: Unable to afford medication":{ "p":0.0, "r":0.0, "f":0.0 }, "Transportation: Has access to public transport vehicle":{ "p":0.0, "r":0.0, "f":0.0 }, "Housing: lives in facility":{ "p":0.0, "r":0.0, "f":0.0 }, "Transportation: Transportation problems":{ "p":1.0, "r":1.0, "f":1.0 }, "Social_isolation: Social Isolation":{ "p":0.0, "r":0.0, "f":0.0 }, "Housing: NA":{ "p":0.0, "r":0.0, "f":0.0 } }, "transformer_loss":377081.381025166, "ner_loss":14440.8680006622 }, "requirements":[ "spacy-transformers>=1.1.4,<1.2.0" ] }