{
  "lang":"en",
  "name":"ner_bionlp13cg_md",
  "version":"0.5.3",
  "description":"Spacy Models for Biomedical Text.",
  "author":"Allen Institute for Artificial Intelligence",
  "email":"ai2-info@allenai.org",
  "url":"https://allenai.github.io/SciSpaCy/",
  "license":"CC BY-SA 3.0",
  "spacy_version":">=3.6.1,<3.7.0",
  "spacy_git_version":"458bc5f45",
  "vectors":{
    "width":200,
    "vectors":50000,
    "keys":4087446,
    "name":"en_core_sci_md.vectors"
  },
  "labels":{
    "tok2vec":[

    ],
    "tagger":[
      "$",
      "''",
      ",",
      "-LRB-",
      "-RRB-",
      ".",
      ":",
      "ADD",
      "AFX",
      "CC",
      "CD",
      "DT",
      "EX",
      "FW",
      "HYPH",
      "IN",
      "JJ",
      "JJR",
      "JJS",
      "LS",
      "MD",
      "NFP",
      "NN",
      "NNP",
      "NNPS",
      "NNS",
      "PDT",
      "POS",
      "PRP",
      "PRP$",
      "RB",
      "RBR",
      "RBS",
      "RP",
      "SYM",
      "TO",
      "UH",
      "VB",
      "VBD",
      "VBG",
      "VBN",
      "VBP",
      "VBZ",
      "WDT",
      "WP",
      "WP$",
      "WRB",
      "XX",
      "``"
    ],
    "attribute_ruler":[

    ],
    "lemmatizer":[

    ],
    "parser":[
      "ROOT",
      "acl",
      "acl:relcl",
      "acomp",
      "advcl",
      "advmod",
      "amod",
      "amod@nmod",
      "appos",
      "attr",
      "aux",
      "auxpass",
      "case",
      "cc",
      "cc:preconj",
      "ccomp",
      "compound",
      "compound:prt",
      "conj",
      "cop",
      "csubj",
      "dative",
      "dep",
      "det",
      "det:predet",
      "dobj",
      "expl",
      "intj",
      "mark",
      "meta",
      "mwe",
      "neg",
      "nmod",
      "nmod:npmod",
      "nmod:poss",
      "nmod:tmod",
      "nsubj",
      "nsubjpass",
      "nummod",
      "parataxis",
      "pcomp",
      "pobj",
      "preconj",
      "predet",
      "prep",
      "punct",
      "quantmod",
      "xcomp"
    ],
    "ner":[
      "AMINO_ACID",
      "ANATOMICAL_SYSTEM",
      "CANCER",
      "CELL",
      "CELLULAR_COMPONENT",
      "DEVELOPING_ANATOMICAL_STRUCTURE",
      "GENE_OR_GENE_PRODUCT",
      "IMMATERIAL_ANATOMICAL_ENTITY",
      "MULTI_TISSUE_STRUCTURE",
      "ORGAN",
      "ORGANISM",
      "ORGANISM_SUBDIVISION",
      "ORGANISM_SUBSTANCE",
      "PATHOLOGICAL_FORMATION",
      "SIMPLE_CHEMICAL",
      "TISSUE"
    ]
  },
  "pipeline":[
    "tok2vec",
    "tagger",
    "attribute_ruler",
    "lemmatizer",
    "parser",
    "ner"
  ],
  "components":[
    "tok2vec",
    "tagger",
    "attribute_ruler",
    "lemmatizer",
    "parser",
    "ner"
  ],
  "disabled":[

  ],
  "performance":{
    "tag_acc":0.0,
    "lemma_acc":0.0,
    "dep_uas":0.0,
    "dep_las":0.0,
    "dep_las_per_type":0.0,
    "sents_p":0.0,
    "sents_r":0.0,
    "sents_f":0.0,
    "ents_f":0.7808239261,
    "ents_p":0.7980221756,
    "ents_r":0.7643513203,
    "ents_per_type":{
      "SIMPLE_CHEMICAL":{
        "p":0.7573333333,
        "r":0.6439909297,
        "f":0.6960784314
      },
      "ORGANISM":{
        "p":0.8175675676,
        "r":0.8432055749,
        "f":0.8301886792
      },
      "MULTI_TISSUE_STRUCTURE":{
        "p":0.6422764228,
        "r":0.5895522388,
        "f":0.6147859922
      },
      "CANCER":{
        "p":0.7788235294,
        "r":0.8193069307,
        "f":0.7985524729
      },
      "GENE_OR_GENE_PRODUCT":{
        "p":0.8547750592,
        "r":0.8155120482,
        "f":0.8346820809
      },
      "CELL":{
        "p":0.7831325301,
        "r":0.7707509881,
        "f":0.7768924303
      },
      "ORGANISM_SUBSTANCE":{
        "p":0.7619047619,
        "r":0.4848484848,
        "f":0.5925925926
      },
      "ORGANISM_SUBDIVISION":{
        "p":0.75,
        "r":0.5,
        "f":0.6
      },
      "TISSUE":{
        "p":0.6543209877,
        "r":0.6708860759,
        "f":0.6625
      },
      "ORGAN":{
        "p":0.8088235294,
        "r":0.8088235294,
        "f":0.8088235294
      },
      "CELLULAR_COMPONENT":{
        "p":0.7244897959,
        "r":0.7802197802,
        "f":0.7513227513
      },
      "IMMATERIAL_ANATOMICAL_ENTITY":{
        "p":0.9090909091,
        "r":0.5555555556,
        "f":0.6896551724
      },
      "AMINO_ACID":{
        "p":0.6315789474,
        "r":0.7741935484,
        "f":0.6956521739
      },
      "PATHOLOGICAL_FORMATION":{
        "p":0.652173913,
        "r":0.3409090909,
        "f":0.447761194
      },
      "ANATOMICAL_SYSTEM":{
        "p":1.0,
        "r":0.6666666667,
        "f":0.8
      },
      "DEVELOPING_ANATOMICAL_STRUCTURE":{
        "p":0.6666666667,
        "r":0.4,
        "f":0.5
      }
    },
    "ner_loss":5887.003366243
  },
  "sources":[
    "BIONLP13CG",
    "OntoNotes 5",
    "Common Crawl",
    "GENIA 1.0"
  ],
  "requirements":[

  ]
}