Table S1. Primers for the amplification of catabolic genes alkB, C23O, PAH-RHDα and C12O in P. aeruginosa stain ASP-53 when grown in presence of pyrene. Sl. No. Gene Primer sequence (Forward) Primer sequence (Reverse) Expected Size Function References 1 alkB 5' AACTACMTCGARCAYTACGG 3' 5' 3' 100 bp Incorporation of one oxygen atom to the substrate and reduction of the other. Hesham et al. [21] 2 C12O 5' GCCAACGTCGACGTCTGGCA 3' 5' 3' 282 bp Oxidative cleavage of catechol (intra diol) Sei et al. [18] 3 C23O 3' 5' 3' 380 bp Oxidative cleavage of catechol (extra diol) Sei et al. [18] 4 5' 3' 5' 3' 306 bp Creates in aromatic ring by oxygenation Cebron et al. [20]
APGFGDR 58.76 718.3 -0.5 2 SPLLLLVDKK 58.39 -0.8 2 PVLEAVAK 51.36 825.5 1.1 2 AAELDSPLLLLVDKK 41.77 -2.2 2 KQIEETTSDYDREK 41.14 -0.8 3 GDEPSVVVDKVK 37.83 1.2 2 DKFENMGAqLVK 34.68 6.3 2 Q9(D) EEGVVPGGGVALVR 29.82 0.4 2 EnTTIIDGAGVQA 28.90 -6.9 2 N2(D) qIVANAGDEPSVVVDK 24.85 0.4 2 Q1(D) AELDSPLLLLVDKK 23.13 0.7 3 GAGVQADIEAR 23.02 0.2 2 DEPSVVVDK 22.14 986.5 -1.9 2 AVESPLRQIVAnAGDEPSVVVDK 20.39 -6.2 3 N12(D) eNTTIIDGAGVQAD 19.94 5.7 2 E1(PG) DESIGqIIAEAMEK 19.62 2.5 2 Q6(D) AVAAGmNPMDLK 19.08 3.9 2 M6(O) ATLGPKGR 16.71 798.5 0.7 2 GLKGDNEEQNVGIALLR 16.47 2.1 3 eGATLEHLGnAK 15.25 5.6 3 E1(PG), N10(D)
GVPYIVVFLNK 63.08 -0.2 2 RPQFYFR 53.91 0.2 2 KPGTIKPHTK 47.07 -0.7 2 GENVGILLR 46.44 969.6 0.7 2 37.74 638.3 0.0 2 GENVGILLRG 30.58 -1.7 2 DDNGIGVSAVQK 28.09 4.3 2 EEVEIVGIK 24.98 -1.2 2 PIEDVFSISGRG 22.64 0.0 2 eGRAGENVGILLR 18.05 -7.3 2 E1(PG) DDNGIGVSAVQK 17.08 3.6 3 N3(D) NMITGAAQmDGAILVCSAADGPmPQ 17.01 5.5 3 M9(O), M23(O) gi|576715139 162.4 translation elongation factor Tu LLDEGRAGEnCGVLLRGTKR 18.82 -0.4 2 N10(D) VQDALEIVGLR 15.21 6.8 2 gi|557557463 92.1 pyruvate carboxylase GEVLEEIPR 44.32 -3.3 2 PGNIVDVLVK 26.05 0.6 2 EPLNEYVAGSASGRK 23.42 -4.5 2 VQVnQVPGGMISnLANQLK 21.10 -7.1 3 N4, N14(D) MGEVLEEIPR 20.98 -7.2 2
AmADmGVDSIAIKDmAGLLTPYATG 18.05 0.5 2 M2, M5, M15(O) TAGVASMCQLK 16.39 2.0 2 GQnLLGYRHYSDDVVR 15.91 1.4 2 N3(D) LqMLLR 15.57 773.4 -3.4 2 Q2(D) gi|15599955 81.9 molecular chaperone DnaK DAEANAEEDRKFEELAAAR 65.14 -2.6 2 nQGDALVHATR 33.40 1.3 2 N1 (D) gi|60549563 74.6 DnaK qASSNKSLGK 18.82 4.3 2 Q1(D) gi|576714049 50.2 succinyl-CoA synthetase, alpha subunit GPNcPGVITPGECK 50.21 0.2 2 C4, C13(C) gi|761540016 49.9 salicylaldehyde dehydrogenase AIAMPLAcGnTVVLK 33.51 0.7 2 C8 (C), N10(D) DAAVAAAqAAFPAWAALAPGER 22.54 7.6 3 Q8(D) LQDAGLGDGVVnVISnAPADAAAIVER 15.34 3.0 3 N13, N17(D) gi|15599956 49.2 heat shock protein GrpE GDLLAVVDTLER 49.21 1.5 2 gi|15596597 46.4 pyruvate carboxylase GADYPAALR 20.33 932.5 5.3 2 gi|787858374 42.2 F0F1 ATP synthase subunit APGVIWR 24.20 797.5 -1.8 2 AVDAMIPVGR 16.73 6.4 2 7
gi|872689223 42.2 Malate synthase A GGLPDFREDTTAIR 22.86 6.4 2 GqqSLAAAVR 18.52 -0.4 2 Q2, Q3 (D) LGETAALPGGAR 18.00 -5.2 2 gi|768690557 38.1 putative glutamate synthase [NADPH], large subunit ISGEAMEAYR 22.43 -4.0 3 MGISTVASYRGAqL 18.39 3.9 2 Q13(D) gi|15598883 36.1 phosphoenolpyruvate carboxylase ADGALLDCLR 17.83 6.9 2 MPEIDARLR 17.13 5.0 2 LDVRQDSAR 17.02 0.7 2 cRGDACGGLEqALLVTVAGVAAGLR 16.12 -4.4 3 C1(C), Q11(D) gi|913661954 34.1 succinate dehydrogenase EGEDVATLR 16.65 988.5 0.9 3 NEDGAFVGMIV 16.33 -5.2 2 QSDIDAALAR 16.30 -2.0 2 SQAFnTARIEALELQ 15.27 -4.9 2 N5(D) gi|15599529 33.8 fumarase LPVDLK 21.79 683.4 0.2 2 ASILADPAGAR 19.98 0.3 2 gi|1256708 32.4 dihydrodiol dehydrogenase VRSMEDQKLAASR 24.25 0.5 2 5
gi|748443777 32.0 Beta-ketoadipyl CoA thiolase ADTTLEALAK 21.45 0.0 2 gi|213928538 31.3 catalase/peroxidase HPI AHQWTPKnGAGAGK 17.82 3.5 2 N8(D) TFGFSGGRPDVWEP 15.82 -3.5 2 gi|908346658 29.9 ATP synthase AGCGKTTLmAELAR 22.10 -4.1 2 M9(O) gi|226934607 28.3 salicylate-5-hydroxylase small oxygenase component (plasmid) DGIAQVFnVGRYIDR 18.69 -5.2 2 N8(D) gi|404306098 26.3 DksA AGEEYmGAPMRAHFTKILnK 26.34 -4.6 3 M6(O), N19(D) gi|166861124 25.7 dihydroorotate dehydrogenase family protein IcGIGGIGNWR 18.23 -2.8 2 C2(C) FRGqAVGHTTDWK 15.03 -3.5 2 Q4(D) gi|582004101 25.3 glutamate dehydrogenase NSLTSLPMGGGK 17.47 -1.7 2 VADAMLAQGV 15.63 973.5 7.4 2 gi|787858376 24.6 F0F1 ATP synthase subunit beta IDVEFPR 24.64 874.5 -0.4 2 gi|543436362 24.3 putative monooxygenase PFLDLK 16.45 731.4 0.1 2 RECPDKR 15.68 902.4 -5.5 2 gi|68347586 23.7 DNA-binding response regulator AlgR MPGLDGLqVAGK 15.98 -2.9 2 Q8(D)
gi|398251702 23.5 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component ALPAFLTGVR 23.46 2.0 2 gi|15598209 22.7 3-ketoacyl-CoA thiolase EAQDKFGAR 22.72 0.9 2 gi|333113900 22.5 glutamate synthase, small subunit VAVIGAGPAGLGCADVLVR 22.49 -6.5 2 gi|565900676 148.0 aldehyde dehydrogenase ETLNADIPLAADHFR 67.11 1.7 2 SPVNGQPIAEFPR 59.20 -0.2 2 TNTSPVnGQPIAEFPR 38.26 0.1 2 N7(D) GSEGAIVSFK 35.51 993.5 -0.3 2 eTLNADIPLAADHFR 33.46 0.4 2 E1(PG) TPVGSHILK 33.36 950.6 -1.0 2 SPVnGQPIAEFPR 33.07 2.0 2 N4(D) YPAHAAFGGYKK 30.63 -1.1 3 TSPVnGQPIAEFPR 30.48 0.1 2 N5(D) IPLAADHFR 26.66 -1.2 2 DIPLAADHFR 26.04 -0.8 2 STAEDIDKALDAAHAAADAWGR 22.62 0.9 3 YPAHAAFGGYK 21.87 0.8 3 AAENIIPSTVELGGK 19.48 1.5 2
LAPALAAGnCVVLKPAEQTPLG 17.92 -3.2 2 N8(D) gi|685900046 133.6 qYPSTSTTVEGHTDSVGTDAYNQK 69.10 3.3 2 Q1(PG) VGYGESRPVADNATAEGR 43.63 0.3 2 YPSTSTTVEGHTDSVGTDAYNQK 42.78 0.4 3 GYGESRPVADNATAEGR 42.69 -0.2 2 GESRPVADNATAEGR 37.18 -2.3 2 YGESRPVADNATAEGR 32.23 0.6 2 FDFDK 21.46 670.3 0.8 2 DVLVNEYGVEGGR 15.06 0.4 2 gi|896274509 129.9 hypothetical protein, partial AGNADGSIPAWDGGLATNAGSVDSR 73.77 1.2 2 APQVSYDGPGTAADGLR 65.43 -0.2 2 VPAAVQEAAK 41.03 982.5 -0.1 2 VPAAVQEAAKR 39.02 -1.6 2 gi|640489896 129.0 phospholipid-binding protein TEEAVSDTWITSK 81.92 -0.1 2 EEAVSDTWITSK 51.28 -0.9 2 SDAERDLAIETAK 37.49 0.3 2 RDLAIETAK 35.54 -0.7 2
gi|959887863 125.3 branched chain amino acid ABC transporter substrate-binding protein AGGVNGAQLEGVIYDDAcDPK 75.44 -1.3 2 C18(C) eGLNAGDKDFNALISK 48.59 -1.0 2 E1(PG) PSGIFVLPAYSAVTVIAK 40.52 0.4 2 AGGVnGAQLEGVIYDDACDPK 30.97 5.0 2 N5(D), C17(C) GEADPEKVAEALR 30.10 0.6 2 GDKDFNALISK 22.45 -0.5 2 115.6 ABC transporter IPLVQNGTVDIEcGSTTNNEER 79.54 1.3 2 C13(C) IPFSYLGTEPGKPIGYSHDLQLK 39.56 -0.7 3 IPFSYLGTEPGKPIGY 33.74 3.6 2 LPELK 20.11 598.4 0.9 2 103.1 type I glutamate--ammonia ligase STGIGDTVFVGPEPEFFIFDEVK 58.31 1.7 2 GEGYAGLSETALYFIGGIIK 43.17 -0.8 2 DALDDEFFEAGK 39.82 0.2 2 IPYVSSPK 24.78 889.5 -0.5 2 IPQVcGSLK 18.42 0.2 2 C5(C) gi|685899032 94.9 homoserine acetyltransferase SEEGAIYNLAQFPISQR 55.79 0.4 2 KPVEASVTGSAK 47.69 0.0 2 GKPVEASVTGSAK 45.64 0.4 2
gi|553777858 90.3 catalase GAPVVDNQNVQTAGPR 64.69 0.0 2 TAAGAPVVDNQNVQTAGPR 37.32 -4.1 2 GAPVVDNQNVQTAGPRG 20.69 3.5 2 gi|15600433 89.7 thioredoxin ADGPVLVDYWAEWcGPcK 73.47 2.7 2 C14, C17(C) APVLDEVAR 32.37 968.5 -0.8 2 gi|759371605 84.5 peroxiredoxin OsmC VPGADAQTFEQIANK 84.50 0.8 2 gi|501025052 81.7 superoxide dismutase [Fe] SPnGGGQPTGALADAINAAFGSFDK 70.31 -1.1 2 N3(D) IPGTEFEGK 22.80 976.5 0.5 2 gi|489185754 81.7 MULTISPECIES: hypothetical protein WGDLTDDDLQAADGHAEYLVGK 81.66 0.7 2 gi|959888333 77.7 hypothetical protein AnGVPAYTLEIVDK 48.82 1.0 2 N2(D) VPAYTLEIVDK 39.15 0.6 2 GVPAYTLEIVDKG 27.90 1.9 2 gi|959946861 77.2 hemagglutinin GDADPALTYQVSGLK 53.17 1.7 2 nGDTAGAVLnGGSLSR 37.03 0.5 2 N1, N9(D) GDTAGAVLnGGSLSR 16.40 0.2 2 N9(D)
gi|959920221 74.8 azurin GSGEKDSVTFDVSK 49.42 -0.6 2 qFTVNLSHPGNLPK 40.43 1.7 2 Q1(PG) ASGLDKDYLKPDDSR 15.45 0.3 3 gi|489200225 74.7 MULTISPECIES: branched chain amino acid ABC transporter substrate-binding protein SDDGVVTDELATTAGGPQYVK 74.70 2.7 2 gi|686194421 70.8 malate dehydrogenase qPVPEDVcAAYGVDKLEFGR 70.84 2.1 2 Q1 (PG), C8(C) gi|489202267 68.8 MULTISPECIES: lipoprotein SPAQLELVSYGK 52.25 -1.2 2 RPVATGHDEQSWAQNR 33.00 1.3 3 gi|518316123 68.6 MULTISPECIES: aldehyde dehydrogenase VPLAADHFR 41.95 -0.4 2 ETLNADVPLAADHFR 16.33 0.8 2 gi|685976103 65.6 toluene tolerance protein APTPQQVVQGTVDELLSDIK 50.60 2.7 2 GPVVDAEGIAK 30.07 -0.4 2 gi|730726525 65.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit SPTSANFVEVGQSVK 64.99 0.7 2 gi|553765341 63.1 hypothetical protein VELFTQAADNLTDPELQAFAK 52.23 1.1 2 DPAYANNQVAAHEK 21.75 5.7 2
gi|686180604 61.3 interchange protein LPADVHFVR 43.24 -1.0 2 EYVELSSPVPVSQPGK 36.13 2.2 2 gi|743509302 59.3 succinate--CoA ligase subunit beta qDYDLALLEVNPLVIKK 47.73 1.1 2 Q1(PG) IDPLVGAQPYQGR 23.06 3.2 2 gi|489247527 56.1 hypothetical protein TPAGQYVQVGGK 56.06 -1.1 2 gi|489187224 55.4 MULTISPECIES: DNA-binding protein KPELAAAIAEK 37.77 -0.1 2 DEITGALNR 35.21 987.5 1.1 2 gi|15595653 54.4 cold-shock protein TPESGPDVFVHFR 54.37 1.1 2 gi|730406310 54.1 branched amino acid aminotransferase DGVIYTPEVTAcLNGITR 44.88 0.9 2 C12(C) TPQGTAIFR 18.44 989.5 -1.1 2 gi|727775772 53.7 quinone oxidoreductase LPAGDVLIR 35.28 952.6 0.2 2 VPAAWVIK 23.01 882.5 2.6 2 GDILFNVVK 20.88 1.3 2 gi|489178422 52.9 MULTISPECIES: DNA-binding protein HU-beta SELIDAIAASADIPK 52.87 0.1 2 gi|927333434 52.0 ABC transporter substrate-binding protein IPLIASDTDSVKR 52.04 0.4 2
gi|640474608 51.9 membrane protein TGHTDSVGSDAYNQK 51.87 1.2 2 gi|959888061 49.1 GTP-binding protein YEVEGGREPLDDLALQGLK 37.23 5.4 2 FPDFHAELK 23.75 0.5 2 gi|489252733 47.1 phosphonate ABC transporter substrate-binding protein VPEQFFSR 34.11 -0.4 2 TPTYYDYNWTVR 25.92 -2.0 2 gi|730543353 47.1 30S ribosomal protein S1 GGFTVDVNGIR 47.07 0.2 2 gi|499198003 46.5 nitrate reductase catalytic subunit LPADLVVTNPK 46.51 -0.5 2 gi|959920977 43.7 universal stress protein UspA AEQAcDLIVVGSHGR 43.70 0.4 2 C5(C) gi|553798646 43.7 DNA-binding transcriptional activator OsmE KPGScNSYILNK 29.42 2.1 2 C5(C) NPVNYITFR 28.47 -3.5 2 gi|640477025 43.6 chitin-binding protein LPAGATVTLR 43.62 997.6 -0.1 2 gi|686186900 42.5 elongation factor G APSNIVEALVK 42.54 -0.8 2 42.5 6,7-dimethyl-8-ribityllumazine synthase GIPVAFGVLTVDSIEQAIER 42.52 4.0 2
gi|489188313 42.4 hypothetical protein APSPQASQEIGR 42.36 1.0 2 gi|489211948 41.1 arginine/ornithine-binding protein AotJ TPAGVEVVR 31.96 926.5 -0.1 2 DAVVADSVNLEDGFLK 18.35 1.7 2 gi|950503484 40.3 3-demethylubiquinone-9 SPcFGTLVDR 40.34 1.3 2 C3(C) gi|730499660 38.9 sugar ABC transporter protein TPPTTLDELFVAADK 25.97 -3.6 2 DGDYVAVPINVHR 25.93 -1.4 2 gi|696539649 38.9 dihydrolipoyl dehydrogenase GPGGYVAAIR 38.93 959.5 -0.6 2 gi|686183052 38.4 DNA-directed RNA polymerase subunit beta LPASVLLR 30.61 867.6 1.1 2 IQSGDKmAGR 15.51 -4.0 2 M7(O) gi|489236817 36.8 sulfate ABC transporter protein VPVLDTGGR 26.51 912.5 0.9 2 LPNNSAPFTSATVFIVR 20.53 -1.1 3 gi|489216146 36.5 ATP-dependent Clp protease proteolytic subunit qPLGGFQGQASDIEIHAK 36.48 2.3 2 Q1(PG) gi|730520115 35.1 inorganic pyrophosphatase LPALLLEQIK 35.05 0.1 2 gi|489247660 34.2 electron transfer flavoprotein subunit beta LPAIVTTDLR 34.22 0.0 2
gi|505316693 33.4 hypothetical protein SPPVTFTVQR 33.41 0.9 2 gi|950502801 33.3 50S ribosomal protein L25/general stress protein Ctc VPLHFINEEVAVGVK 33.27 -1.4 3 gi|730539863 33.0 ecotin IPVVGEGFLLR 33.00 0.7 2 gi|896360700 31.7 MULTISPECIES: hypothetical protein DEPAELLLR 31.71 0.9 2 gi|730337074 31.6 4-hydroxy-3-hydrodipicolinate synthase LPLTWLSPR 31.56 -0.7 2 gi|501025821 28.6 aldehyde dehydrogenase LPLVIEALK 20.74 994.6 1.5 2 LPLVIEALKG 15.76 -0.4 2 gi|558688971 28.4 4a-hydroxytetrahydrobiopterin dehydratase IPDWNIEVR 28.35 0.9 2 gi|553791479 26.7 hydratase IPATIAPFVVK 26.66 -0.7 2 gi|510933646 26.5 ABC transporter substrate-binding protein KPIGTGPFVFSR 26.51 0.4 3 gi|959913462 24.9 peptidase RDLGPDEALK 24.90 -0.2 2 gi|15599465 24.0 DNA-directed RNA polymerase subunit beta' LPYGAVISVK 23.97 -5.4 2
gi|489251846 23.6 L-asparaginase VPTLQELR 23.56 954.5 -0.9 2 gi|959892378 23.5 GTPase SAR1 LPDALGK 23.52 712.4 0.3 2 gi|940307717 23.5 Dihydrodipicolinate lyase TnVEVGYSVMDALK 23.54 -0.3 3 N2(D) gi|685977810 22.9 RNA polymerase sigma-H factor AlgU GRPAVVLAVTPR 22.92 -0.2 2 gi|553770940 22.6 translation initiation inhibitor YPSSLPFPFSR 22.60 -0.3 2 gi|518314176 22.5 ATP-dependent Clp protease ClpC VPDSFAGTLLK 22.46 -1.5 2 gi|490498876 21.9 protease KPEDIPAFNR 21.88 3.3 2 gi|640474206 21.9 X-Pro dipeptidase AAPLIDQGR 21.86 939.5 -0.3 2 gi|928211953 21.9 aldo/keto reductase, diketogulonate reductase AVPVIGqGTWR 21.86 3.1 2 Q7(D) gi|959877102 20.6 two-component system response regulator FPILILTAR 20.56 -0.6 2 gi|909625654 20.3 glycine cleavage system protein H KPSNPAELDK 20.31 -0.4 2 gi|761895334 27.1 dioxygenase nGNLVAAPHVGGLK 19.6 -7.9 2 N1(D) mIVLNIVPMGPDR 15.0 -1.7 2 M1(O)
gi|15599562 3410.4 superoxide dismutase 147 15.2 3 C28(Ca) YVEAFWNLVNWDFVAK 107 1.9 2 NALEPHISAETLEYHHDK 82 1.3 2 TSVGTFGSGWGWLVKK 82 1.8 2 78 1.5 3 HHNTYVVNLNNLIPGTEFEGK 70 2.3 2 FKEEFTK 53 928.5 -1.9 2 AFELPPLPYEK 49 0.2 2 gi|15598725 5144.0 peroxidase KAPDFNVAAVLGNGEIVESFTLSEAIK 105 0.4 2 80 -1.1 4 C17(Ca) SQIVNDLPLGR 73 -0.2 2 NTPVDKGGIGAVKYTLAADTKHEIAK 71 1.6 3 GAFLIDKEGVVR 68 0.4 2 LVDALQFHEEHGEVcPANWKK 63 1.2 2 C15(Ca) 60 2.7 3 C15(Ca) 58 -1.7 4 54 2.6 4 gi|489202440 4855.3 phosphonate ABC transporter substrate-binding protein TFAFGSVSSTSGSLmPR 109 -0.4 2 M15(Ox)
104 1.8 3 M21(Ox) FIETNPDNYKGIEESAR 97 1.2 2 VFATTPTYYDYNWTVR 96 0.0 2 80 0.2 3 GNLDPALAEK 75 -0.2 2 VSAIPDEAPTELLR 68 0.4 2 65 -1.3 4 TGNAIPLVQR 47 -0.1 2 KFKPLGAYLEK 43 0.2 3 gi|727811637 4004.7 dihydrolipoamide succinyltransferase, partial 149 0.4 3 M6(Ox); M38(Ox) EAVSFLVAIKDLLEDPAR 109 1.0 2 LVEAQSAMAMLTTFNEVNmKPImDLR 106 0.6 3 M19(Ox); M23(Ox) 97 1.4 3 NAEFmSLAEIEGGIANFGKK 87 -0.2 2 M5(Ox) IQERPmAVNGQVVILPMmYLALSYDHR 81 -1.3 3 M6(Ox); M18(Ox) LGFmSFFVK 53 -0.7 2 M4(Ox) LIDGKEAVSFLVAIK 52 -0.2 3 SKYKDLFEK 40 -0.4 3 GLVVPVLR 37 852.6 -0.4 2
gi|489216384 7516.8 ABC transporter QVDFSVGIFEVGTR 101 -0.1 2 VVDKAITDTYASGEVNK 99 0.0 2 YNLVTSQTR 75 0.1 2 AVAFmmDDALLYGEmAK 74 -0.1 2 M5(Ox); M6(Ox); M15(Ox) AKKPDDWVVGGTPQSFEIYGcmVR 70 1.1 2 C21(Ca); M22(Ox) IYDKWFTQPIPPK 63 0.0 2 TANIKDFDDLKGKNVVTTAGTTSER 62 -0.9 3 KTANIKDFDDLKGK 61 0.4 2 GLNLNFPmSEELKK 55 0.8 2 M8(Ox) MGMNIISAKDHGESFMMLESGR 47 1.3 4 ELNLPELK 46 955.5 -0.3 2 44 -0.3 LIASPTDKAAEQm 43 -0.6 3 M13(Ox) gi|727809885 656.1 acid ABC transporter substrate-binding protein WTLYGLLNAEELGVTSSNVER 135 0.3 2 FSALQSGTVDLLSR 103 -0.1 2 ALEAGQcDVLSSDQSQLYAQR 85 0.9 2 C7(Ca) ALAAALFGDAEK 79 -0.3 2 GLNAQWNLGGLHYAPPIR 64 0.0 3
QGDEAWFNIVR 64 0.6 2 KGYVQcGVSDGLPGFSYADAK 60 -0.8 3 C6(Ca) GLDVDIcR 39 947.5 -0.4 2 C7(Ca) DWVVQMVR 36 0.1 2 M6(Ox) EPLGPAVR 33 838.5 -0.3 2 gi|852096674 6648.0 hypothetical protein, partial 145 0.9 3 108 2.6 3 M35(Ox) QAYDFNYSASESDYTPAALR 105 1.1 2 LVTQATPQVNGSYQLVYFQDAFTFR 103 2.1 2 AGNADGSIPAWDGGLATNAGSVDSR 99 -1.4 2 LAWLYNAGQR 81 0.2 2 RAPQVSYDGPGTAADGLR 79 1.2 2 LAGNVLLVHETLNQVKEPR 78 0.3 2 RDFYIDEDTWQAAEIDHYDGR 77 0.3 3 VWHVVATLKPGER 72 0.4 2 VAEAHAEQYYDK 64 0.2 2 LGTSLTPLGAEK 61 -0.4 2 YLALGmKNEEK 60 0.2 2 M6(Ox) TNLKDYNPNKPSNVLFYFK 54 -0.2 2
SATVPAAVQEAAKR 54 0.4 2 TSDNFDmYNGAPDRYDWKLEGK 49 -7.2 3 M7(Ox) KEIYIPYNSYK 49 -0.1 2 YPDTYKIPVYK 44 6.1 2 AGHINQDLTR 37 0.0 2 gi|489172582 8808.8 branched chain amino acid ABC transporter substrate-binding protein 127 -0.1 2 M2(Ox) AGGVNGAQLEGVIYDDAcDPK 99 1.0 2 C18(Ca) IALAGPVTGPVAQYGDmQR 92 0.3 2 M17(Ox) 90 1.3 3 C7(Ca); M25(Ox) 85 0.0 3 M9(Ox) AGVQFVYFGGYHPEMGLLLR 81 2.1 2 ANTFETPTGNLGFDEKGDLK 81 6.5 2 DKTIAVLHDKQQYGEGIATEVKK 66 0.4 3 GIEKAGEADPEKVAEALR 66 0.1 2 AKNQDPSGIFVLPAYSAVTVIAK 63 0.4 2 AGALMAIEQINK 59 0.5 2 NFDFTVYEWHKDATR 57 -0.1 2 YKDKTIAVLHDKQQYGEGIATEVK 53 0.3 3 0
gi|937421302 26.6 putative GALLDAAVVR 18.7 983.6 0.4 2 gi|32967107 26.6 LapN TASKKMNAKEK 18.0 1234.7 -2.0 2 YQAEKERK 17.1 1050.5 0.3 2 gi|10764670 26.0 GidA KGPAVRATRAQADR 16.7 1495.8 -7.9 3 gi|666690932 25.9 acetyl-CoA hydrolase MQLDQPqGLR 25.9 1185.6 -0.1 2 Q7(D) gi|108769013 25.8 phthalate 3,4-dihydrodiol dehydrogenase ALIVGGGSGIGR 25.8 1055.6 6.6 2 gi|15599784 25.5 glutamate dehydrogenase nSLTTLPmGGGKGGSDFDPK 16.0 1994.9 -4.8 2 N1(D), M5(O) gi|553897368 25.0 tRNA uridine modification enzyme GidA AGDPPSIALAR 16.7 1066.6 -0.4 2 gi|787858374 24.7 F0F1 ATP synthase subunit alpha KFTNGAVTGK 16.7 1021.6 1.9 2 AVDAMIPVGR 15.9 1027.5 6.0 2 gi|913661954 24.6 succinate dehydrogenase ANATVLATGGAGR 24.6 1157.6 -6.8 3 gi|145692874 24.6 HCH-reductase LinF TVDAAAAVAR 16.8 943.5 2.0 2 AQELAATLGDK 15.6 1115.6 -0.6 2 gi|359763600 23.5 AlgR KPDIVLLDIR 15.8 1180.7 1.6 2 gi|331024675 21.6 acetyl-CoA hydrolase AGEAKAVPHALAER 21.6 1418.8 -7.8 2
KFTNGAVTGK 15.3 1021.6 1.9 2 gi|1001045512 40.0 transcription termination/antitermination protein NusG TPVELEFSQVEKV 40.0 1503.8 1.4 2 gi|565826207 39.4 glutamine synthetase IPYVSSPK 31.0 889.5 0.2 2 TGIGDTVFVGPEPEFFIFDEVK 16.7 2442.2 3.9 2 gi|759456745 39.3 chromosome partitioning protein ParA ANEDALNEGSLVDGVNLAVER 39.3 2184.1 3.8 2 gi|489255221 39.2 chitin-binding protein CbpD LPAGATVTLR 39.2 997.6 -0.1 2 gi|959875038 38.8 electron transporter RnfB LPAIVTTDLR 29.4 1097.6 1.1 2 qPQLVILGK 18.8 977.6 1.6 2 Q1(PG) gi|489249800 38.8 cystathionine beta-synthase GIPGGSSTGTLLAAALR 38.8 1540.9 0 2 gi|730383240 37.6 50S ribosomal protein L1 GPAAEAALAAGADK 37.6 1211.6 -2.3 2 gi|730279592 36.9 nitroreductase VPADAFAATETK 36.9 1219.6 -0.9 2 gi|730657412 36.2 ABC transporter substrate-binding protein TPAGVEVVR 36.2 926.5 0.2 2 gi|685899885 35.8 acid dehydrogenase LPYPNDEAAIGDAIR 35.8 1613.8 -0.8 2 gi|15596035 35.4 glutathione peroxidase TPQYAGLENLYQTYR 35.4 1815.9 0.5 2 gi|959922431 35.1 ubiquinol-cytochrome c reductase iron-sulfur subunit DPGQQIIAEWR 35.1 1311.7 0.3 2
gi|1001068312 34.1 Hcp1 family type VI secretion system effector GGENQVEYLIITLK 34.1 1575.9 2.8 2 gi|730333325 33.7 biofilm formation protein PslB APEVLIAAR 33.7 938.6 0.3 2 gi|730304091 33.5 two-component system response regulator IPVIIVTTK 33.5 982.6 -0.8 2 gi|640474228 32.7 nitrogen regulatory protein ELPEFDAQTIFENLVAR 32.7 1991.0 1.9 2 gi|489199932 32.6 ABC transporter substrate-binding protein VPHSWADLLQGK 32.6 1349.7 -0.8 3 gi|730604841 32.6 adenosine deaminase IPFEVVLAGIR 32.6 1212.7 -1.2 2 gi|489239673 32.6 porin LPVELIWQPK 32.6 1221.7 -0.8 2 gi|1000934201 32.3 L-asparaginase VPVDQLLASVPQLK 32.3 1505.9 1 2 gi|489252733 32.0 phosphonate ABC transporter substrate-binding protein TPTYYDYNWTVR 32.0 1577.7 -2.5 2 gi|489253047 30.7 tryptophan synthase subunit beta IPVTAGTGTLK 30.7 1056.6 -0.9 2 gi|730520115 30.5 inorganic pyrophosphatase LPALLLEQIK 30.5 1136.7 1.2 2 gi|730609375 29.5 DNA-binding response regulator FPILILTAR 29.5 1042.7 0.6 2 gi|959882353 29.4 acyl-CoA dehydrogenase IPEGIIAR 29.4 867.5 0 2 gi|730441130 28.9 alkylhydroperoxidase RPLIELVYLR 28.9 1270.8 -1.1 2
gi|489194016 28.8 MULTISPECIES: acyl-CoA dehydrogenase LPDAEGNVGAR 28.8 1098.5 1.5 2 N7(D) gi|727810341 28.6 N-succinylglutamate dehydrogenase LPAGVLNLVQGGR 28.6 1292.8 -0.3 2 gi|730686201 28.2 50S ribosomal protein L19 APGDTVIVQVK 28.2 1125.6 -2.6 2 gi|959888333 27.6 hypothetical protein VPAYTLEIVDK 27.6 1246.7 2.2 2 gi|852081788 26.5 assembly protein PilZ LPVGQLLVLR 26.5 1106.7 -0.5 2 gi|553763722 26.4 oxidoreductase NPYNLLNR 26.4 1002.5 0 2 gi|730301699 26.3 acetyl-CoA acetyltransferase DPIVIVSAVR 26.3 1067.6 -1.3 2 gi|1000935501 26.0 hemolysin activation/secretion protein LPGTVQPSQLDER 26.0 1438.7 -0.4 2 gi|518201378 25.7 sensor histidine kinase APWVLQK 25.7 840.5 0.8 2 gi|730284259 24.8 reductase VPAHLVVK 24.8 861.5 1 2 gi|643985067 24.3 methionine--tRNA ligase APGIAEAYEAR 24.3 1146.6 -2.6 2 gi|553798646 23.4 DNA-binding transcriptional activator OsmE NPVNYITFR 23.4 1122.6 -6.3 2 gi|953533548 23.4 metallopeptidase APAANDEQSEFVR 23.4 1432.7 0.6 2 gi|553765499 23.2 protease AALATPIR 23.2 811.5 1 2
gi|959908322 22.9 type III secretion system protein FLCQAPALAR 22.9 1088.6 1.3 2 gi|730357728 22.3 iron donor protein CyaY EPLGALLNR 22.3 981.6 -2.3 2 gi|935268401 22.2 hypothetical protein LPANPLYK 22.2 914.5 -1.2 2 gi|15598882 21.5 adenylate kinase KPLVDFYQK 21.5 1136.6 0.8 2 gi|640476987 21.5 type VI secretion system protein ImpL LQDGEQAAnLGLAAR 21.5 1526.8 0.5 2 N9(D) gi|730721957 21.4 DNA topoisomerase IV subunit B LPVSGAPNWLR 21.4 1208.7 2.9 2