burststat Burst analysis Single channel analysis of discrete bursts Self explanatory Dirk Bucher 2003 General use gastbin Burst analysis Burst analysis of a fast rhythmic signal with respect to a normalized slow rhythmic signal. analyze burst parameters of a pyloric neuron over the normalized gastric mill cycle (in gastric cycle bins) Dirk Bucher 2015 Specialized gastropyloric Burst analysis Burst analysis of a fast rhythmic signal with respect to a slow rhythmic signal. Analyze when each pyloric happens in the gastric phase Dirk Bucher 2005 Specialized gpPhase Burst analysis '"gastric/pyloric phase" (written for Blitz lab). Burst and phase analysis of a pyloric reference neuron and an additional pyloric (follower) neuron with respect to the phase of a gastric reference neuron. Analyze gastro-pyloric interactions in the STG Dirk Bucher 2013 specialized missburst Burst analysis checks the regularity of alternation of two bursting neurons. Returns normal burststatistics for a reference channel and number of bursts of a second channel in each reference cycle. Quick way to check how much cycle skipping occurs. Dirk Bucher 2012 Fast hack mkbursts analysis Creates a marker channel that holds burst starts and ends. Do burst detection from spike events Dirk Bucher 2002 General use nSpks Burst analysis Plots the number of spikes per burst into a RealMark channel. Fast check for burst variability Dirk Bucher 2012 General use periodcount Burst analysis Counts the number of pyloric cycles (with fraction) within each gastric cycle. Analysis of gastropyloric interactions Dirk Bucher 2005 Specialized
phaseburst analysis Analyses rhythmic bursting in 2-3 neurons fairly completely (in phase and time, and with optional spike analysis). and burst analysis of pyloric or gastric patterns Dirk Bucher 2002 General use PRC Burst analysis Does response curve analysis. Self explanatory. Dirk Bucher 2003 Fast hack pyloricBmk Burst analysis Detects PD, LP and PY spikes and bursts if good enough for simple thresholding. Faster than doing it one by one. Dirk Bucher 2005 Specialized pyloricPhase Burst analysis Customized version of "phaseburst" for analysis of pyloric rhythms from extracellular recordings Faster than doing it with the general scripts Dirk Bucher 2003 Specialized pylPhConsec Burst analysis Pyloric phase analysis from consecutive files. Analyze recordings Dirk Bucher 2005 Specialized The_Crab_Analyzer analysis Does detection , burst detection, and phase analysis. Analyze pyloric and gastric rhythms all in one go. Wolfgang Stein 2009 Specialized trigBurst analysis Script to analyze repetitive episodes of bursting Dirk Bucher 2005 General use 1111 Channel editing General use AddChan Channel editing Generates an event channel that holds events of two input event channels. Put detection results from two different time windows into a single channel Dirk Bucher 2002 General use artiCut Channel editing Cuts out stimulus artifacts from a waveform channel and replaces them with a linear interpolation. Remove artifacts where data loss in that time window is not important, or where artifacts are inconsistent Dirk Bucher 2012 General use artiSubtr Channel editing Removes stimulus artifacts from recording traces by subtracting a template average artifact waveform. Remove artifacts with minimal data loss in traces with consistent artifact waveforms. Dirk Bucher 2012 General use
chunkreplace Channel editing copies a chunk of waveform from one channel and place it into another channel Dirk Bucher 2012 Fast hack ClearProc Channel editing Clears all Channel Processes (like "smooth" or "rectify") from all channels. Too lazy to do it one by one. Dirk Bucher 2012 General use EditEvt Channel editing Edits event or marker channels. Delete or add events or markers by hand. Dirk Bucher 2007 General use setBursts Channel editing generates an event channel with "artificial bursts". Generate test data sets Dirk Bucher 2002 General use subtrSpikes Channel editing Subtracts events of one channel from another. Separating signals of different amplitude in extracellular recordings. Dirk Bucher 2002 General use WinSubtr Channel editing Deletes events in an event channel in time windows defined by markers in a marker channel. Analyze interacting temporal patterns Dirk Bucher 2004 General use 1111 File manipulation General use batchImp File manipulation Converts a batch of files in foreign format (e.g., Axon) into spike2 files. Doesn’t work when trying to convert foreign format 32bit files into 64bit spike 8 files! You need to install the 32bit spike8 version to do this. Convert all from and expt recorded in foreign format for spike2 analysis Dirk Bucher 2002 General use ConcatFiles File Manipulation Concatenates consecutive time view files (waveform channels only). analyze larger time stretches Dirk Bucher 2007 General use RepFileMerge File Manipulation Creates a new file that holds event and waveform channels from two source files that were recorded with matching stimulus patterns. Channels aligned at reference stimulus patterns can be used for virtual channel calculations. Dirk Bucher 2013 General use 1111*doesn Plot General use explanatory
EMFseq Plot Outputs a sequence of metafiles from time views Make movies or make images of longer time stretches at decent resolution. CAN NOW EASILY BE EXTENDED TO ALLOW TIFF OR JPG, JUST HAVEN’T DONE THAT YET. Dirk Bucher 2005 Fast hack floatingBar Plot Creates an XY view floating bar chart with error bars. Values are entered manually. Fast way to create plots for CPG patterns Wolfgang Stein, Dirk Bucher 2009 Fast hack mSweepAve Plot Plots multiple sweeps of AVERAGED waveform data with fixed delay and duration from a trigger Average noisy traces from step protocols Dirk Bucher 2014 General use multiSweep Plot Plots multiple sweeps of waveform data with fixed delay and duration from a trigger (XY plot) Identify signals with consistent delay. Generate sweep plots from VC/CC protocols Dirk Bucher 2002 General use PhSweepAve Plot Creates both a multiple sweeps window and an average of waveform data in phase, i.e. normalized to the sweep duration. Average of waveform trajectory in rhythmic activity with variable periods. Dirk Bucher 2016 General use PoissCreate Plot Makes a file with an event channel in Poisson distribution Create a Poisson stimulus Dirk Bucher 2016 General use respMk Plot Creates artificial unitary passive responses from spike train event channel input using a te-at function. Create artificial EPSP or contraction responses to a spike pattern Ralph DiCaprio, Dirk Bucher 2002 General use SquareWave Plot Creates a waveform channel with square signals, at time points taken from an event channel. Create TTL triggers Dirk Bucher 2013 Fast hack
SweepAve Plot Make average from multiple sweeps in XY file. Only uses visible channels Exclude some sweeps from average Dirk Bucher 2016 General use SweepDiff Plot the difference between two multisweep plots, as generated with "MultiSweeps" Leak subtraction and difference currents from VC protocols Dirk Bucher 2004 General use TrigEMF Plot Outputs a sequence of metafiles from time views triggered by events Make movies or make images of longer time stretches at decent resolution. CAN NOW EASILY BE EXTENDED TO ALLOW TIFF OR JPG, JUST HAVEN’T DONE THAT YET. Dirk Bucher 2005 Fast hack WolfieSweep Plot Version of “multisweep “ for more than 2 channels Identify signals with consistent delay. Generate sweep plots from VC/CC protocols Wolfgang Stein 2005 General use XYIhleak Plot Subtract leak from Ih measurements by scaling the response to the smallest command and subtracting it from all step responses Alternative to subtracting leak from backward fits (script”Ih_fit”) under waveform analysis. Dirk Bucher 2016 Fast hack 1111 Spike analysis burstDelay Spike analysis Analyzes delays and waveforms from burst stimulations of axons. delay and waveform changes from nerve stimulations with realistic burst structures. Dirk Bucher 2012 Specialized delFilter Spike analysis Sorts spikes according to 2 different delay times between 2 recording sites Self Dirk Bucher 2002 General use delFix Spike analysis Plots delays between stimuli and spike responses, lets you edit for spike failures and ectopic spikes. Edit stimulus and response event channels to measure conduction delays over time. Dirk Bucher 2016 Specialized
delPlot Spike analysis Plots delays between stimuli and spike responses into a RealMark channel Fast delay analysis Dirk Bucher 2012 Fast hack delTest Spike analysis Plots delays between stimuli and spike responses into a RealMark channel, even if number of events are not matching Fast delay analysis, identify spike failure times Dirk Bucher 2012 Fast hack FailEctZoom analysis Checks for spike failures or ectopic spikes in burst stimulations, and zooms in on the next occurence of a mismatch between stim and response channels. Specifically written for editing event channels from PD axon recordings (specific channel names). Dirk Bucher 2011 Specialized IF_ISI analysis Returns intervals and instantaneous frequencies for an event channel Fast analysis Dirk Bucher and Ralph DiCaprio 2002 Fast hack PoissDel analysis Analyzes delays and spike waveforms from poisson stimulations of axons. Track delay and waveform changes from nerve stimulations with randomized intervals. Dirk Bucher 2012 Specialized pPulse Spike analysis Analyzes delays and waveform parameter changes from paired pulse recovery cycle protocols. Analyze axon excitability changes Dirk Bucher 2010 Specialized rate_meanfreq Spike analysis Returns spike numbers and mean frequency in defined bins from an event channel. Fast spike analysis Dirk Bucher 2002 Fast hack tPulse analysis Analyzes delays and waveform parameter changes from recovery cycle protocols with conditioning trains. Analyze axon excitability changes Dirk Bucher 2010 Specialized 1111 View manipulation
'IMI_XYcursors Waveform analysis cursors into an XY view IV plot of IMI for fast measurements, returns values to log window. Measure peak, baseline, and Vpeak from IMI IV plots. Dirk Bucher 2013 Fast hack IMIcont Waveform analysis Creates IV plots of the modulator activated inward current from continuous (repeated) voltage clamp ramps during peptide application. Roughly analyze how responses to peptide application change over time and pick maximal responses for later analysis with “RampIV”. Dirk Bucher 2012 Specialized instCorr Waveform analysis Creates fast scatterplots of EPSP or EJP amplitudes from 2 waveform channels to see if they are correlated. Dirk Bucher 2005 Fast hack IVcurve Waveform analysis Returns IV values from time of step protocols Fast IV curve from input resistance measurements Dirk Bucher 2004 Fast hack P5protocol Waveform analysis Creates a multisweep xy view of the summed step sequence from P/5 protocol data. For leak subtraction the "SweepDiff" script. Dirk Bucher 2009 Specialized PPsubtr Waveform analysis Subtracts conditioning pulse waveform from paired pulse responses Accurate paired pulse analysis Dirk Bucher 2014 General use PSPparamAv Waveform analysis Returns PSP parameters from a waveform average. Fast but crude analysis of PSPs Dirk Bucher 2002 Fast hack RampIV Waveform analysis Creates difference current and IV plot from result files averaged from voltage ramps run to measure IMI in STG neurons Measure peak current and voltage at peak of IMI Dirk Bucher 2012 Specialized SpkShapeSingle Waveform analysis Returns spike shape or EPSP shape parameters like peak voltage, time to peak and 2 time constants of exponential decay. Return single spike shape parameters from PD axon recordings (no undershoot) Dirk Bucher 2014 Fast hack