yusuke1997/dblp-id-title huggingface dataset:
Literature Based Discovery: Models, methods, and trends
The impact of emerging standards adoption on automated quality reporting
The use of receiver operating characteristic curves in biomedical informatics
Analysis and modelling of septic shock microarray data using Singular Value Decomposition
A framework for information system usage in collaborative care
Natural Language Processing methods and systems for biomedical ontology learning
Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles
Automated classification of metaphase chromosomes: Optimization of an adaptive computerized scheme
Deep neural models for ICD-10 coding of death certificates and autopsy reports in free-text
Neural negated entity recognition in Spanish electronic health records
Why is biomedical informatics hard? A fundamental framework
Semi-supervised learning to improve generalizability of risk prediction models
Uncovering digital overdiagnosis - Quantification and mitigation using clinical trajectories: Heparin-induced thrombocytopenia use case
A multimodal approach for few-shot biomedical named entity recognition in low-resource languages
eTACTS: A method for dynamically filtering clinical trial search results
Adjusting for false discoveries in constraint-based differential metabolic flux analysis
Machine learning algorithm for feature space clustering of mixed data with missing information based on molecule similarity
Identifying impact of software dependencies on replicability of biomedical workflows
Introducing RFID technology in dynamic and time-critical medical settings: Requirements and challenges
Exploring the associations between drug side-effects and therapeutic indications
Novel evaluation approach for molecular signature-based deconvolution methods
Modeling engagement with a digital behavior change intervention (HeartSteps II): An exploratory system identification approach
Supporting integrated care with a flexible data management framework built upon Linked Data, HL7 FHIR and ontologies
Human-centered design of a distributed knowledge management system
Towards the automated economic assessment of newborn screening for rare diseases
A weighted rule based method for predicting malignancy of pulmonary nodules by nodule characteristics
Using the contextual language model BERT for multi-criteria classification of scientific articles
A cost-effective IoT learning environment for the training and assessment of surgical technical skills with visual learning analytics
Special Issue on Reproducible Research for Biomedical Informatics
A Novel Algorithm for the Heart Rate Variability Analysis of Short-Term Recordings: Polar Representation of Respiratory Sinus Arrhythmia
Integrating domain knowledge for biomedical text analysis into deep learning: A survey
Nomographic representation of logistic regression models: A case study using patient self-assessment data
Estimating the joint disease outbreak-detection time when an automated biosurveillance system is augmenting traditional clinical case finding
Combining glass box and black box evaluations in the identification of heart disease risk factors and their temporal relations from clinical records
Gene Expression Variation Analysis (GEVA): A new R package to evaluate variations in differential expression in multiple biological conditions
Selective Automated Indexing of Findings and Diagnoses in Radiology Reports
Classification of ADHD with bi-objective optimization
A deep learning approach for predicting the quality of online health expert question-answering services
Discerning conversational context in online health communities for personalized digital behavior change solutions using Pragmatics to Reveal Intent in Social Media (PRISM) framework
Covariance matrix based fall detection from multiple wearable sensors
Comparison of UMLS terminologies to identify risk of heart disease using clinical notes
Meta-analysis informed machine learning: Supporting cytokine storm detection during CAR-T cell Therapy
Computational selection of distinct class- and subclass-specific gene expression signatures
LabeledIn: Cataloging labeled indications for human drugs
Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study
Conceptualizing the world: Lessons from history
A hybrid model for automatic identification of risk factors for heart disease
Active learning strategies for the deduplication of electronic patient data using classification trees
Exploiting MEDLINE for gene molecular function prediction via NMF based multi-label classification
A reductionist approach to extract robust molecular markers from microarray data series - Isolating markers to track osseointegration
Detecting time-evolving phenotypic topics via tensor factorization on electronic health records: Cardiovascular disease case study
Using semantic predications to uncover drug-drug interactions in clinical data
Pupillary light reflex as a diagnostic aid from computational viewpoint: A systematic literature review
Cognitive Informatics for Biomedicine: Human Computer Interaction in Healthcare, Vimla L. Patel, Thomas G. Kannampallil, David R. Kaufman. Springer, Switzerland (2015). 332 pages
Identifying sub-phenotypes of acute kidney injury using structured and unstructured electronic health record data with memory networks
Quantifying the costs and benefits of privacy-preserving health data publishing
The use of think-aloud and instant data analysis in evaluation research: Exemplar and lessons learned
A new method of content based medical image retrieval and its applications to CT imaging sign retrieval
Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data
Text de-identification for privacy protection: A study of its impact on clinical text information content
A cognitive systems engineering design approach to improve the usability of electronic order forms for medical consultation
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets
A Comparison of Logistic Regression to Decision Tree Induction in the Diagnosis of Carpal Tunnel Syndrome
Implementation of Three-Dimensional EEG Brain Mapping
Use of morphological analysis in protein name recognition
Automatic Evaluation of Motor Rehabilitation Exercises Based on Deep Mixture Density Neural Networks
Health at hand: A systematic review of smart watch uses for health and wellness
Causal fairness assessment of treatment allocation with electronic health records
A framework and model for evaluating clinical decision support architectures
Variable neighborhood search for reverse engineering of gene regulatory networks
Prediction of black box warning by mining patterns of Convergent Focus Shift in clinical trial study populations using linked public data
Development and validity of computerized neuropsychological assessment devices for screening mild cognitive impairment: Ensemble of models with feature space heterogeneity and retrieval practice effect
Exploiting adversarial transfer learning for adverse drug reaction detection from texts
Cross-Modal self-supervised vision language pre-training with multiple objectives for medical visual question answering
Validating pathophysiological models of aging using clinical electronic medical records
Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies
Inter-terminology mapping of nursing problems
Clinical narrative-aware deep neural network for emergency department critical outcome prediction
Patients' and physicians' understanding of health and biomedical concepts: relationship to the design of EMR systems
A simple and effective algorithm for detection of arbitrary Hartmann-Shack patterns
A random forest algorithm-based approach to capture latent decision variables and their cutoff values
Identify and mitigate bias in electronic phenotyping: A comprehensive study from computational perspective
Evaluating warfarin dosing models on multiple datasets with a novel software framework and evolutionary optimisation
Rough-set-based ADR signaling from spontaneous reporting data with missing values
Maintaining and Incrementally Revalidating a Computer-Based Clinical Guideline: A Case Study
Adapting the open-source Gen3 platform and kubernetes for the NIH HEAL IMPOWR and MIRHIQL clinical trial data commons: Customization, cloud transition, and optimization
A user-centered framework for redesigning health care interfaces
On designing a usable interactive system to support transplant nursing
Shigekoto Kaihara (1937-2011)
Towards a framework for interoperability and reproducibility of predictive models
A hybrid system to understand the relations between assessments and plans in progress notes
Representations of health concepts: a cognitive perspective
Diagnosis clarification by generalization to patient-friendly terms and definitions: Validation study
Single and multiple time-point prediction models in kidney transplant outcomes
Detecting anomalous sequences in electronic health records using higher-order tensor networks
Neural network-based system for early keratoconus detection from corneal topography
Discovering role interaction models in the Emergency Room using Process Mining
Hierarchical label-wise attention transformer model for explainable ICD coding
Personalized cardiorespiratory fitness and energy expenditure estimation using hierarchical Bayesian models
Building a semantically annotated corpus of clinical texts
Opportunistic decision making and complexity in emergency care
Summarization of biomedical articles using domain-specific word embeddings and graph ranking
Modelling of classification rules on metabolic patterns including machine learning and expert knowledge
A systems engineering perspective on the human-centered design of health information systems
Mortality prediction in intensive care units (ICUs) using a deep rule-based fuzzy classifier
Exploration of association rule mining for coding consistency and completeness assessment in inpatient administrative health data
Navigation in the electronic health record: A review of the safety and usability literature
Causal knowledge graph construction and evaluation for clinical decision support of diabetic nephropathy
Supporting retrieval of diverse biomedical data using evidence-aware queries
Selection of interdependent genes via dynamic relevance analysis for cancer diagnosis
Towards a privacy preserving cohort discovery framework for clinical research networks
Creating hospital-specific customized clinical pathways by applying semantic reasoning to clinical data
Secondary use of radiological imaging data: Vanderbilt's ImageVU approach
Evaluation of probabilistic and logical inference for a SNP annotation system
A smartwatch-based framework for real-time and online assessment and mobility monitoring
Optimization of an adverse outcome pathway network on chemical-induced cholestasis using an artificial intelligence-assisted data collection and confidence level quantification approach
Development and evaluation of a biomedical search engine using a predicate-based vector space model
Automatic detection of protected health information from clinic narratives
Computer-aided detection of breast cancer on mammograms: A swarm intelligence optimized wavelet neural network approach
Leveraging dialog systems research to assist biomedical researchers' interrogation of Big Clinical Data
Towards identifying intervention arms in randomized controlled trials: Extracting coordinating constructions
Enabling international adoption of LOINC through translation
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects
A novel gateway-based solution for remote elderly monitoring
Enhancing AI-based diabetic retinopathy screening in low- and middle-income countries with synthetic data
Graph-spa: A Spatiotemporal Graph Neural Network based framework for ARDS prediction and interpretability
PCGMMF: a prediction method for breast cancer prognostic recurrence and metastasis risk based on enhanced multimodal feature fusion
Identifying and characterizing highly similar notes in big clinical note datasets
DOME: Directional medical embedding vectors from Electronic Health Records
Generating evidence on privacy outcomes to inform privacy risk management: A way forward?
Impact of COVID-19 on the outreach strategy of cancer social service agencies in Singapore: A pre-post analysis with Facebook data
Definition of a SNOMED CT pathology subset and microglossary, based on 1.17 million biological samples from the Catalan Pathology Registry
Evidence of community structure in Biomedical Research Grant Collaborations
Protein-protein interaction relation extraction based on multigranularity semantic fusion
Combinatorial feature embedding based on CNN and LSTM for biomedical named entity recognition
Associative attention networks for temporal relation extraction from electronic health records
Toward multimodal signal detection of adverse drug reactions
PLAGCA: Predicting protein-ligand binding affinity with the graph cross-attention mechanism
OQAFMA Querying Agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks
A taxonomic description of computer-based clinical decision support systems
Left ventricle segmentation combining deep learning and deformable models with anatomical constraints
Accuracy is in the eyes of the pathologist: The visual interpretive process and diagnostic accuracy with digital whole slide images
GENA: A knowledge graph for nutrition and mental health
Statistical supervised meta-ensemble algorithm for medical record linkage
A prediction and interpretation framework of acute kidney injury in critical care
Petri net based model of the body iron homeostasis
Extracting experimental parameter entities from scientific articles
Using a contextualized sensemaking model for interaction design: A case study of tumor contouring
OntoVIP: An ontology for the annotation of object models used for medical image simulation
Analysis of microarray leukemia data using an efficient MapReduce-based K-nearest-neighbor classifier
Factors influencing mHealth adoption and its impact on mental well-being during COVID-19 pandemic: A SEM-ANN approach
Unveiling novel bladder cancer associations from multicentred primary and secondary care electronic health records by machine learning: a case-control study
PRIMIS: Privacy-preserving medical image sharing via deep sparsifying transform learning with obfuscation
3-D Reconstruction from Tomographic Data Using 2-D Active Contours
Enabling personalized decision support with patient-generated data and attributable components
Usability study of clinical exome analysis software: Top lessons learned and recommendations
Implementing standards for the interoperability among healthcare providers in the public regionalized Healthcare Information System of the Lombardy Region
Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities
Generalized and transferable patient language representation for phenotyping with limited data
Cognitive schema and naturalistic decision making in evidence-based practices
CoMNRank: An integrated approach to extract and prioritize human microbial metabolites from MEDLINE records
On the reproducibility of results of pathway analysis in genome-wide expression studies of colorectal cancers
Physiological synchronization and entropy as measures of team cognitive load
Hospital information systems: Measuring end user computing satisfaction (EUCS)
The Identification of Peaks in Physiological Signals
Neural network-based approaches for biomedical relation classification: A review
Turning Dialogues Into Event Data: Lessons From GPT-Based Recognition of Nursing Actions
Standardizing data exchange for clinical research protocols and case report forms: An assessment of the suitability of the Clinical Data Interchange Standards Consortium (CDISC) Operational Data Model (ODM)
A Multi-Source drug combination and Omnidirectional feature fusion approach for predicting Drug-Drug interaction events
Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance
An optimized code-free AI approach for efficient and accurate literature screening in bone organoid research
Developing common methods for evaluating health information exchange
A framework for analyzing the cognitive complexity of computer-assisted clinical ordering
An evaluation of clinical order patterns machine-learned from clinician cohorts stratified by patient mortality outcomes
Compositional framework for multitask learning in the identification of cleavage sites of HIV-1 protease
Exploiting semantic patterns over biomedical knowledge graphs for predicting treatment and causative relations
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
The Taiwanese method for providing patients data from multiple hospital EHR systems
A shared latent space matrix factorisation method for recommending new trial evidence for systematic review updates
Methodology Used for "Software for Automated Linkage in Italy" (SALI)
Evaluating gender bias in ML-based clinical risk prediction models: A study on multiple use cases at different hospitals
Using an ensemble system to improve concept extraction from clinical records
Measures of semantic similarity and relatedness in the biomedical domain
Investigation of bias in the automated assessment of school violence
A pan-cancer landscape of pathogenic somatic copy number variations
Fully automated detection of formal thought disorder with Time-series Augmented Representations for Detection of Incoherent Speech (TARDIS)
Hidden Markov model using Dirichlet process for de-identification
Analysis of high-order SNP barcodes in mitochondrial D-loop for chronic dialysis susceptibility
Reflective random indexing for semi-automatic indexing of the biomedical literature
A new clustering method for detecting rare senses of abbreviations in clinical notes
ProFUSO: Business process and ontology-based framework to develop ubiquitous computing support systems for chronic patients' management
Healthcare in the pocket: Mapping the space of mobile-phone health interventions
A Health Surveillance Software Framework to deliver information on preventive healthcare strategies
Do it faster with PICOS: Generative AI-Assisted systematic review screening
Disentangling the evolution of MEDLINE bibliographic database: A complex network perspective
Matching patients to clinical trials using semantically enriched document representation
Tree testing of hierarchical menu structures for health applications
Extracting drug-drug interactions from texts with BioBERT and multiple entity-aware attentions
Use of "off-the-shelf" information extraction algorithms in clinical informatics: A feasibility study of MetaMap annotation of Italian medical notes
Efficient verification for outsourced genome-wide association studies
Demoting redundant features to improve the discriminatory ability in cancer data
A kinetic model-based algorithm to classify NGS short reads by their allele origin
Forecasting acute kidney injury and resource utilization in ICU patients using longitudinal, multimodal models
Patient-centric characterization of multimorbidity trajectories in patients with severe mental illnesses: A temporal bipartite network modeling approach
Towards the development of a conceptual distance metric for the UMLS
TURF: Toward a unified framework of EHR usability
Patient-specific learning in real time for adaptive monitoring in critical care
Machine learning based on eye-tracking data to identify Autism Spectrum Disorder: A systematic review and meta-analysis
A REDCap advanced randomization module to meet the needs of modern trials
Searching for scientific evidence in a pandemic: An overview of TREC-COVID
Improving the interoperability of drugs terminologies: Infusing local standardization with an international perspective
Physician activity during outpatient visits and subjective workload
Efficient computation of interacting model systems
Coordinating clinic and surgery appointments to meet access service levels for elective surgery
Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2
Deriving consumer-facing disease concepts for family health histories using multi-source sampling
Multi-layer framework of identifying placenta related research towards Placenta Curated Research Dataset (PCRD) development for the PAT project
Exploring semantic groups through visual approaches
A similarity network approach for the analysis and comparison of protein sequence/structure sets
Discovery of clinical pathway patterns from event logs using probabilistic topic models
Improving patient prostate cancer risk assessment: Moving from static, globally-applied to dynamic, practice-specific risk calculators
Evaluation of relational and NoSQL database architectures to manage genomic annotations
EHR audit logs: A new goldmine for health services research?
EHR-QC: A streamlined pipeline for automated electronic health records standardisation and preprocessing to predict clinical outcomes
How to identify patient perception of AI voice robots in the follow-up scenario? A multimodal identity perception method based on deep learning
Microservice chatbot architecture for chronic patient support
Modeling Medical Prognosis: Survival Analysis Techniques
Assessing the practice of biomedical ontology evaluation: Gaps and opportunities
Temporal attention networks for biomedical hypothesis generation
A process model for quality in use evaluation of clinical decision support systems
Mining connections between chemicals, proteins, and diseases extracted from Medline annotations
A new computational workflow to guide personalized drug therapy
miRWalk - Database: Prediction of possible miRNA binding sites by "walking" the genes of three genomes
Enhancing healthcare process analysis through object-centric process mining: Transforming OMOP common data models into object-centric event logs
MedTime: A temporal information extraction system for clinical narratives
Predicting treatment recommendations in postmenopausal osteoporosis
Healthcare cost prediction: Leveraging fine-grain temporal patterns
Importance of variables from different time frames for predicting self-harm using health system data
Developing an expert panel process to refine health outcome definitions in observational data
Population stratification enables modeling effects of reopening policies on mortality and hospitalization rates
Letter to Editor: An argument for a universal health record
Design and usability evaluation of user-centered and visual-based aids for dietary food measurement on mobile devices in a randomized controlled trial
Supporting rural public health practice to address local-level social determinants of health across Northwest states: Development of an interactive visualization dashboard
Extracting and classifying diagnosis dates from clinical notes: A case study
Developing a deep learning natural language processing algorithm for automated reporting of adverse drug reactions
Understanding disease processes by partitioned dynamic Bayesian networks
Toward a complete dataset of drug-drug interaction information from publicly available sources
Data visualization speeds review of potential adverse drug events in patients on multiple medications
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review
Building an OMOP common data model-compliant annotated corpus for COVID-19 clinical trials
Abnormal respiratory event detection in sleep: A prescreening system with smart wearables
Content overlap in nurse and physician handoff artifacts and the potential role of electronic health records: A systematic review
Machine learning based predictive model for the analysis of sequence activity relationships using protein spectra and protein descriptors
CMBEE: A constraint-based multi-task learning framework for biomedical event extraction