yusuke1997/dblp-id-title huggingface dataset:
Synthetic-to-real attentive deep learning for Alzheimer's assessment: A domain-agnostic framework for ROCF scoring
A survey of SNOMED CT implementations
Agents endowed with uncertainty management behaviors to solve a multiskill healthcare task scheduling
Measuring the effects of computer downtime on hospital pathology processes
MiRNA-TF-gene network analysis through ranking of biomolecules for multi-informative uterine leiomyoma dataset
Corrigendum to "In Memoriam: 'Professor Mario Stefanelli (1945-2010)'" [J Biomed Inform (2010) 859-60]
Assessment of the feasibility of developing a clinical pathway using a clinical order log
A community-of-practice-based evaluation methodology for knowledge intensive computational methods and its application to multimorbidity decision support
Intradialytic blood pressure pattern recognition based on density peak clustering
What's in a character?
Machine learning approaches for the discovery of clinical pathways from patient data: A systematic review
Medical Informatics and Bioinformatics: European Efforts to Facilitate Synergy
Selecting information in electronic health records for knowledge acquisition
Choosing the best algorithm for event detection based on the intended application: A conceptual framework for syndromic surveillance
Research on Chinese medical named entity recognition based on collaborative cooperation of multiple neural network models
Confederated learning in healthcare: Training machine learning models using disconnected data separated by individual, data type and identity for Large-Scale health system Intelligence
Evolutionary strategy to develop learning-based decision systems. Application to breast cancer and liver fibrosis stadialization
Empirically-derived synthetic populations to mitigate small sample sizes
Improving condition severity classification with an efficient active learning based framework
State of the art and a mixed-method personalized approach to assess patient perceptions on medical record sharing and sensitivity
"Note Bloat" impacts deep learning-based NLP models for clinical prediction tasks
FunVar: A systematic pipeline to unravel the convergence patterns of genetic variants in ASD, a paradigmatic complex disease
JBI status report
Producing personalized statin treatment plans to optimize clinical outcomes using big data and machine learning
Adversarial neural network with sentiment-aware attention for detecting adverse drug reactions
Dynamic Models for Nonstationary Signal Segmentation
Defining phenotypes of disease severity for long-term cardiovascular, renal, metabolic, and mental health conditions in primary care electronic health records: A mixed-methods study using the nominal group technique
What is biomedical informatics?
Mining association patterns of drug-interactions using post marketing FDA's spontaneous reporting data
Comparison of machine learning classifiers for influenza detection from emergency department free-text reports
Algorithms for evaluation of minimal cut sets
Portable automatic text classification for adverse drug reaction detection via multi-corpus training
A federated semantic metadata registry framework for enabling interoperability across clinical research and care domains
SWGDT: A sliding window-based genotype dependence testing tool for genome-wide susceptibility gene scan
Convert-Pheno: A software toolkit for the interconversion of standard data models for phenotypic data
Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation
Towards actionable risk stratification: A bilinear approach
Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative
Chief complaint classification with recurrent neural networks
Ameliorative missing value imputation for robust biological knowledge inference
Mismatches between major subhierarchies and semantic tags in SNOMED CT
Improving severity classification of Hebrew PET-CT pathology reports using test-time augmentation
Call for Papers: Data Generation in Healthcare Environments
A multi-label approach using binary relevance and decision trees applied to functional genomics
A reusable framework for health counseling dialogue systems based on a behavioral medicine ontology
'Big data', Hadoop and cloud computing in genomics
Implementation and evaluation of a system for assessment of the quality of long-term management of patients at a geriatric hospital
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure
AutoScore-Imbalance: An interpretable machine learning tool for development of clinical scores with rare events data
Classifying patient portal messages using Convolutional Neural Networks
Primary care physician time utilization before and after implementation of an electronic health record: A time-motion study
Large-scale neural biomedical entity linking with layer overwriting
An overview on the emerging area of identification, characterization, and assessment of health apps
RysannMD: A biomedical semantic annotator balancing speed and accuracy
Named entity recognition from Chinese adverse drug event reports with lexical feature based BiLSTM-CRF and tri-training
Corrigendum to "Drug repositioning with metapath guidance and adaptive negative sampling enhancement" [J. Biomed. Inform. 171 (2025) 104916]
Comprehensive mitigation framework for concurrent application of multiple clinical practice guidelines
Learning from past respiratory failure patients to triage COVID-19 patient ventilator needs: A multi-institutional study
Reducing systematic review workload through certainty-based screening
Relationship auditing of the FMA ontology
Conformance analysis for comorbid patients in Answer Set Programming
TransDiffECG: Semantically controllable ECG synthesis via transformer-based diffusion modeling
Digital video analysis of health professionals' interactions with an electronic whiteboard: A longitudinal, naturalistic study of changes to user interactions
AwarNS: A framework for developing context-aware reactive mobile applications for health and mental health
A fast gene selection method for multi-cancer classification using multiple support vector data description
Multi-source Seq2seq guided by knowledge for Chinese healthcare consultation
An automated reasoning framework for translational research
fmi-ii: Table of Contents
French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes
Terminology representation guidelines for biomedical ontologies in the semantic web notations
Multi-step ahead meningitis case forecasting based on decomposition and multi-objective optimization methods
Nonstationary multivariate Gaussian processes for electronic health records
Learning predictive models that use pattern discovery - A bootstrap evaluative approach applied in organ functioning sequences
Social network analysis for better understanding of influenza
Defining the distance between diseases using SNOMED CT embeddings
Evaluation of alternative standardized terminologies for medical conditions within a network of observational healthcare databases
A dynamic approach to mapping coordinates between microplates and microarrays
Learning to match patients to clinical trials using large language models
Evolution and challenges in the design of computational systems for triage assistance
A mother-child data linkage approach using data from the information system for the development of research in primary care (SIDIAP) in Catalonia
Improving patient safety reporting with the common formats: Common data representation for Patient Safety Organizations
Enhanced heart failure mortality prediction through model-independent hybrid feature selection and explainable machine learning
A methodology for interactive mining and visual analysis of clinical event patterns using electronic health record data
Improving the classification of multiple disorders with problem decomposition
Multi-view prediction of Alzheimer's disease progression with end-to-end integrated framework
Development of an automated phenotyping algorithm for hepatorenal syndrome
A bioinformatics framework for genotype-phenotype correlation in humans with Marfan syndrome caused by FBN1 gene mutations
Development of a generalizable natural language processing pipeline to extract physician-reported pain from clinical reports: Generated using publicly-available datasets and tested on institutional clinical reports for cancer patients with bone metastases
Using concept hierarchies to improve calculation of patient similarity
New JBI policy emphasizes substantive, practical methodological innovations for biomedical privacy and security papers
Innovative use of the integrative review to evaluate evidence of technology transformation in healthcare
Balancing the efforts of chart review and gains in PRS prediction accuracy: An empirical study
Aligned deep neural network for integrative analysis with high-dimensional input
A hybrid model based on neural networks for biomedical relation extraction
A naked eye 3D display and interaction system for medical education and training
SurvMaximin: Robust federated approach to transporting survival risk prediction models
Multi-agent norm perception and induction in distributed healthcare
Biomedical Complexity and Error
Data driven linear algebraic methods for analysis of molecular pathways: Application to disease progression in shock/trauma
Three-stage intelligent support of clinical decision making for higher trust, validity, and explainability
Developing deep learning-based strategies to predict the risk of hepatocellular carcinoma among patients with nonalcoholic fatty liver disease from electronic health records
Methods and applications of evolutionary computation in biomedicine
Predicting anxiety state using smartphone-based passive sensing
Machine learning-based demand forecasting in cancer palliative care home hospitalization
A novel method to estimate the indirect community benefit of HIV interventions using a microsimulation model of HIV disease
Imbalanced prediction of emergency department admission using natural language processing and deep neural network
Virtualizing living and working spaces: Proof of concept for a biomedical space-replication methodology
Classification of CT pulmonary angiography reports by presence, chronicity, and location of pulmonary embolism with natural language processing
A hierarchical, scalable architecture for a real-time monitoring system for an electrocardiography, using context-aware computing
OntoADR a semantic resource describing adverse drug reactions to support searching, coding, and information retrieval
Game-based interventions for neuropsychological assessment, training and rehabilitation: Which game-elements to use? A systematic review
Protein contact map prediction using multi-stage hybrid intelligence inference systems
CSM-SD: Methodology for contrast set mining through subgroup discovery
Identifying health information technology related safety event reports from patient safety event report databases
Comprehensive vertical sample-based KNN/LSVM classification for gene expression analysis
Cross domains adversarial learning for Chinese named entity recognition for online medical consultation
A method to implement fine-grained access control for personal health records through standard relational database queries
Automatic ICD code assignment of Chinese clinical notes based on multilayer attention BiRNN
Multi-level semantic fusion network for Chinese medical named entity recognition
Identifying progression subphenotypes of Alzheimer's disease from large-scale electronic health records with machine learning
Automatic generation of spoken dialogue from medical plans and ontologies
Understanding safety-critical interactions with a home medical device through Distributed Cognition
Soft phenotyping for sepsis via EHR time-aware soft clustering
Translating standards into practice: Experience and lessons learned at the Department of Veterans Affairs
An efficient, large-scale, non-lattice-detection algorithm for exhaustive structural auditing of biomedical ontologies
A semantic framework to protect the privacy of electronic health records with non-numerical attributes
Integrating monitor alarms with laboratory test results to enhance patient deterioration prediction
Comparing image search behaviour in the ARRS GoldMiner search engine and a clinical PACS/RIS
Identifying scientific artefacts in biomedical literature: The Evidence Based Medicine use case
Using uncertain data from body-worn sensors to gain insight into type 1 diabetes
Mental health ubiquitous monitoring supported by social situation awareness: A systematic review
Towards a unified search: Improving PubMed retrieval with full text
TiMeDDx - A multi-phase anchor-based diagnostic decision-support model
Creating and sharing clinical decision support content with Web 2.0: Issues and examples
Candidate gene prioritization for non-communicable diseases based on functional information: Case studies
Let's get Physiqual - An intuitive and generic method to combine sensor technology with ecological momentary assessments
Adopting the sensemaking perspective for chronic disease self-management
Graphic and haptic simulation for transvaginal cholecystectomy training in NOTES
Innovative informatics methods for process mining in health care
Discontinuous named entities in clinical text: A systematic literature review
Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies
Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method
An approach to automatic process deviation detection in a time-critical clinical process
A framework for systematic evaluation of health information infrastructure progress in communities
Best variable identification by means of data-mining and cooperative game theory
SANDS: A service-oriented architecture for clinical decision support in a National Health Information Network
Implementations of the HL7 Context-Aware Knowledge Retrieval ("Infobutton") Standard: Challenges, strengths, limitations, and uptake
Cognitive and usability engineering methods for the evaluation of clinical information systems
A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease
Medical speciality classification system based on binary particle swarms and ensemble of one vs. rest support vector machines
Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure
Adaptation of an NLP system to a new healthcare environment to identify social determinants of health
Patient safety classifications, taxonomies and ontologies: A systematic review on development and evaluation methodologies
The National Institutes of Health's Biomedical Translational Research Information System (BTRIS): Design, contents, functionality and experience to date
Two biomedical sublanguages: a description based on the theories of Zellig Harris
Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network
Collaborative co-design of emerging multi-technologies for surgery
A computational TW3 classifier for skeletal maturity assessment. A Computing with Words approach
Accuracy of an automated knowledge base for identifying drug adverse reactions
CBN: Constructing a clinical Bayesian network based on data from the electronic medical record
The perils of meta-regression to identify clinical decision support system success factors
A visual framework to create photorealistic retinal vessels for diagnosis purposes
Using the Internet to Calculate Clinical Action Thresholds
SYFSA: A framework for Systematic Yet Flexible Systems Analysis
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts
Evaluation of clinical practice guideline-derived clinical decision support systems using a novel quality model
A hybrid neural network based model for blood donation forecasting
An unsupervised learning method to identify reference intervals from a clinical database
A semi-supervised approach to unobtrusively predict abnormality in breathing patterns using hydraulic bed sensor data in older adults aging in place
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs
Septic shock prediction for ICU patients via coupled HMM walking on sequential contrast patterns
Argumentation logic for the flexible enactment of goal-based medical guidelines
Symbolic Representation of Anatomical Knowledge: Concept Classification and Development Strategies
The reuse of electronic health records information models in the oncology domain: Studies with the bioframe framework
Advancing Chinese biomedical text mining with community challenges
Temporal phenotyping by mining healthcare data to derive lines of therapy for cancer
Approaches to verb subcategorization for biomedicine
Low-cost algorithms for clinical notes phenotype classification to enhance epidemiological surveillance: A case study
Practical approach to determine sample size for building logistic prediction models using high-throughput data
Recommendations for research design and reporting in computer-assisted diagnosis to facilitate meta-analysis
Methodological variations in lagged regression for detecting physiologic drug effects in EHR data
Deep learning with wearable based heart rate variability for prediction of mental and general health
NegAIT: A new parser for medical text simplification using morphological, sentential and double negation
Exploiting the UMLS Metathesaurus for extracting and categorizing concepts representing signs and symptoms to anatomically related organ systems
A framework for the automatic description of healthcare processes in natural language: Application in an aortic stenosis integrated care process
Methods in informatics: using data derived from a systematic review of health care texts to develop a concept map for use in the neonatal intensive care setting
A topological approach for cancer subtyping from gene expression data
TransforMED: End-to-Εnd Transformers for Evidence-Based Medicine and Argument Mining in medical literature
Predict or draw blood: An integrated method to reduce lab tests
Federated electronic data capture (fEDC): Architecture and prototype
Identifying erroneous height and weight values from adult electronic health records in the All of Us research program
Generalized genomic data sharing for differentially private federated learning
A three stage ontology-driven solution to provide personalized care to chronic patients at home
Retraction notice to "Graphic and haptic simulation for transvaginal cholecystectomy training in NOTES" [J. Biomed. Inform. 60 (2016) 410-421]
How well do multimodal LLMs interpret CT scans? An auto-evaluation framework for analyses
A comprehensive evaluation framework for synthetic medical tabular data generation
Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines
Towards a framework for developing semantic relatedness reference standards
Research Electronic Data Capture (REDCap®) used as an audit tool with a built-in database
Molecular property diagnostic suite for diabetes mellitus (MPDS DM ): An integrated web portal for drug discovery and drug repurposing
Assessing real-world medication data completeness
Health information exchange policy and evaluation
FedIMPUTE: Privacy-preserving missing value imputation for multi-site heterogeneous electronic health records
Yield and bias in defining a cohort study baseline from electronic health record data
A flexible approach to distributed data anonymization
SSGU-CD: A combined semantic and structural information graph U-shaped network for document-level Chemical-Disease interaction extraction
Leveraging heterogeneous tabular of EHRs with prompt learning for clinical prediction
EHR2CCAS: A framework for mapping EHR to disease knowledge presenting causal chain of disorders - chronic kidney disease example
Few-shot learning based oral cancer diagnosis using a dual feature extractor prototypical network
Use patterns of health information exchange through a multidimensional lens: Conceptual framework and empirical validation
How can we reward you? A compliance and reward ontology (CaRO) for eliciting quantitative reward rules for engagement in mHealth app and healthy behaviors
Dynamic Bayesian Networks to predict sequences of organ failures in patients admitted to ICU
Transferability of artificial neural networks for clinical document classification across hospitals: A case study on abnormality detection from radiology reports
Real-time risk prediction of colorectal surgery-related post-surgical complications using GRU-D model
Boosting performance of gene mention tagging system by hybrid methods
FuseLinker: Leveraging LLM's pre-trained text embeddings and domain knowledge to enhance GNN-based link prediction on biomedical knowledge graphs
A technology selection framework for supporting delivery of patient-oriented health interventions in developing countries
Modeling nurse-patient assignments considering patient acuity and travel distance metrics
Technology, work, and information flows: Lessons from the implementation of a wireless alert pager system
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures
A novel depth estimation algorithm of chest compression for feedback of high-quality cardiopulmonary resuscitation based on a smartwatch
A method for extracting tumor events from clinical CT examination reports
Defining and measuring physicians' responses to clinical reminders
The impact of extraneous features on the performance of recurrent neural network models in clinical tasks
ctPath: Demixing pathway crosstalk effect from transcriptomics data for differential pathway identification
Finding representative electrocardiogram beat morphologies with CUR
Exploiting missing clinical data in Bayesian network modeling for predicting medical problems
Technology acceptance and critical mass: Development of a consolidated model to explain the actual use of mobile health care communication tools
Systematic review of smartphone-based passive sensing for health and wellbeing
Study on multimodal spatially-constrained contrastive learning for knee osteoarthritis severity grading
Identification of susceptible genes for complex chronic diseases based on disease risk functional SNPs and interaction networks
Secure count query on encrypted genomic data
Studying pediatric health outcomes with electronic health records using Bayesian clustering and trajectory analysis
Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment
Automated learning of domain taxonomies from text using background knowledge
Cross-product extensions of the Gene Ontology
Designing personalised mHealth solutions: An overview
Pathway analysis of genomic pathology tests for prognostic cancer subtyping
Comparing early outbreak detection algorithms based on their optimized parameter values
CausalGenDiff: Generative causal diffusion bridges scRNA-seq and spatial transcriptomics
Early detection and risk assessment for chronic disease with irregular longitudinal data analysis
Ease of adoption of clinical natural language processing software: An evaluation of five systems
Intervention time prediction from surgical low-level tasks
Reservoir hosts prediction for COVID-19 by hybrid transfer learning model
OnWARD: Ontology-driven web-based framework for multi-center clinical studies
A Markov approach for increasing precision in the assessment of data-intensive behavioral interventions
Whole-exome sequencing enhances prognostic classification of myeloid malignancies
Comparison between Human and Artificial Neural Network Detection of Laplacian-Derived Electroencephalographic Activity Related to Unilateral Voluntary Movements ,