yusuke1997/dblp-id-title huggingface dataset:
Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series
Quantitative Biology Undergraduate Major at the University of Southern California
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019)
Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns
Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks
Dynamic Epidemiological Networks: A Data Representation Framework for Modeling and Tracking of SARS-CoV-2 Variants
Accurate Detection of Very Sparse Sequence Motifs
Modeling Multiplexed Images with Spatial-LDA Reveals Novel Tissue Microenvironments
Calculating Sample Size Estimates for RNA Sequencing Data
On Methods for Gene Function Scoring as a Means of Facilitating the Interpretation of Microarray Results
Estimating the Number of Double-Strand Breaks Formed During Meiosis from Partial Observation
Bias for 3′-Dominant Codon Directional Asymmetry in Theoretical Minimal RNA Rings
Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA Sequencing Data
Pseudoknot RNA Structures with Arc-Length >= 4
Estimation of the Mutation Rate During Error-prone Polymerase Chain Reaction
Logistic Regression Method for Ligand Discovery
Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets
Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks
From Policy to Prediction: Assessing Forecasting Accuracy in an Integrated Framework with Machine Learning and Disease Models
Recognition of Genes in Human DNA Sequences
Preface: Special RECOMB 2005 Issue
Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks
Recognition of the Helical Cytokine Fold
Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains
Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds
Improving the Practical Space and Time Efficiency of the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment
Weighted Gene Coexpression Network Analysis Reveals the Critical lncRNAs and mRNAs in Development of Hirschsprung's Disease
A New Algorithm for DNA Sequence Assembly
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection
Attentive Cross-Modal Paratope Prediction
Expectation and Variance of True and False Fragment Matches in DNA Restriction Mapping
Predicting Protein Complexes from PPI Data: A Core-Attachment Approach
Coexpression of PBX1 and EMP2 as Prognostic Biomarkers in Estrogen Receptor-Negative Breast Cancer via Data Mining
Positivity Preserving Truncated Euler-Maruyama Scheme for the Stochastic Age-Structured HIV/AIDS Model
The Effects of Nested Primer Bindingg Sites on the Reproducibility of PCR: Mathematical Modeling and Simulation Studies
A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting
Inferring Genome-Wide Functional Modulatory Network: A Case Study on NF-κB/RelA Transcription Factor
The Generalized Robinson-Foulds Distance for Phylogenetic Trees
Probabilistic Generation of Random Networks Taking into Account Information on Motifs Occurrence
Genome-Wide Causation Studies of Complex Diseases
A Sequence Alignment Algorithm with an Arbitrary Gap Penalty Function
Characterizing SARS-CoV-2 Spike Sequences Based on Geographical Location
A Biologically Informed and Efficient DNA Sequence Learner for Predicting Functional Genomics Events
Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models
Emergent Protein Folding Modeled with Evolved Neural Cellular Automata Using the 3D HP Model
A Particle Swarm Optimization-Based Approach with Local Search for Predicting Protein Folding
BiRNN-DDI: A Drug-Drug Interaction Event Type Prediction Model Based on Bidirectional Recurrent Neural Network and Graph2Seq Representation
A Simplified Proof of the NP- and MAX SNP-Hardness of Multiple Sequence Tree Alignment
Preface: Satellite Workshop on Comparative Genomics, Research in Computational Molecular Biology (RECOMB-CG 2010)
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks
Coalescent-Based DNA Barcoding: Multilocus Analysis and Robustness
Enhancing Data Compression: Recent Innovations in LZ77 Algorithms
A New Data Mining Approach for the Detection of Bacterial Promoters Combining Stochastic and Combinatorial Methods
A Novel Real-Time Genome Comparison Method Using Discrete Wavelet Transform
Toward an Information Theory of Quantitative Genetics
Phylogeny Construction with Rigid Gapped Motifs
Finding Maximal Exact Matches Using the r-Index
A Grammatical Theory for the Conformational Changes of Simple Helix Bundles
Identifying Interventional and Pathogenic Mechanisms by Generative Inverse Modeling of Gene Expression Profiles
Efficient Identification of Equivalences in Dynamic Graphs and Pedigree Structures
Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints
Evaluating, Comparing, and Interpreting Protein Domain Hierarchies
DNA Sequencing With Positive and Negative Errors
A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data
Bioinformatics Analysis of Differentially Expressed Genes, Methylated Genes, and miRNAs in Unexplained Recurrent Spontaneous Abortion
Enhancing the Prediction of Transcription Factor Binding Sites by Incorporating Structural Properties and Nucleotide Covariations
Biclustering of Linear Patterns In Gene Expression Data
Restricted DCJ Model: Rearrangement Problems with Chromosome Reincorporation
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures
An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees
PEAK: Integrating Curated and Noisy Prior Knowledge in Gene Regulatory Network Inference
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum
Preface: Selected Articles from RECOMB 2017
Improving eQTL Analysis Using a Machine Learning Approach for Data Integration: A Logistic Model Tree Solution
A Geometric Clustering Algorithm with Applications to Structural Data
Modular DAG-RNN Architectures for Assembling Coarse Protein Structures
Identifying Splicing Regulatory Elements with de Bruijn Graphs
Algorithm and Data Structures for Efficient Energy Maintenance during Monte Carlo Simulation of Proteins
IntOMICS: A Bayesian Framework for Reconstructing Regulatory Networks Using Multi-Omics Data
Combinatorics of Saturated Secondary Structures of RNA
Discovering Simple Regions in Biological Sequences Associated with Scoring Schemes
A Discriminative Framework for Detecting Remote Protein Homologies
DSEP: A Tool Implementing Novel Method to Predict Side Effects of Drugs
Continuous Glucose Monitoring Time Series Data Analysis: A Time Series Analysis Package for Continuous Glucose Monitoring Data
Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life"
Trade-offs of Linear Mixed Models in Genome-Wide Association Studies
Prokaryotic Contig Annotation Pipeline Server: Web Application for a Prokaryotic Genome Annotation Pipeline Based on the Shiny App Package
Transcriptional Regulatory Network Analysis to Reveal the Key Genes Involved in Skeletal Muscle Injury
BayesMD: Flexible Biological Modeling for Motif Discovery
Nongreedy Unbalanced Huffman Tree Compressor for Single and Multifasta Files
Catching the Genomic Wave in Oligonucleotide Single-Nucleotide Polymorphism Arrays by Modeling Sequence Binding
Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features
Understanding Protein Flexibility through Dimensionality Reduction
On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance
A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data
Approximations to Profile Score Distributions
A Model of Technical Variation of Microarray Signals
Dynamic Modeling of miRNA-mediated Feed-Forward Loops
Mathematical Analyses on the Effects of Control Measures for a Waterborne Disease Model with Socioeconomic Conditions
Sequence Alignment with Tandem Duplication
Sorting Signed Permutations by Inversions in O ( n log n ) Time
Using Attention-UNet Models to Predict Protein Contact Maps
Special Issue: Computational Intelligence
Recovering the Missing Regions in Crystal Structures from the Nuclear Magnetic Resonance Measurement Data Using Matrix Completion Method
Optimal Scanning of All Single-Point Mutants of a Protein
A Note on Scoring Clones Given a Probe Ordering
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees
Modeling Clonal Expansion from M-FISH Experiments
Benchmarking and Testing Machine Learning Approaches with BARRA: CuRDa, a Curated RNA-Seq Database for Cancer Research
Compressed Representation of Extreme Learning Machine with Self-Diffusion Graph Denoising Applied for Dissecting Molecular Heterogeneity
Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue of Taxon Sampling
Function-Function Correlated Multi-label Protein Function Prediction over Interaction Networks
IsoDA: Isoform-Disease Association Prediction by Multiomics Data Fusion
An Analytical Approach that Combines Knowledge from Germline and Somatic Mutations Enhances Tumor Genomic Reanalyses in Precision Oncology
Subject-Specific Dosage Estimation for Primary Hypothyroidism Using Sparse Data
A Fourier Characteristic of Coding Sequences: Origins and a Non-Fourier Approximation
New Method for the Assessment of All Drug-Like Pockets Across a Structural Genome
Genome Rearrangements on Multigenomic Models: Applications of Graph Convexity Problems
Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein
Deep Reinforcement Learning and Simulation as a Path Toward Precision Medicine
Quantifying Hybridization in Realistic Time
Screening of Critical Genes Involved in Metastasis and Prognosis of High-Grade Serous Ovarian Cancer by Gene Expression Profile Data
Screening and Identification of Key Biomarkers in Melanoma: Evidence from Bioinformatic Analyses
PROFALIGN Algorithm Identifies the Regions Containing Folding Determinants by Scoring Pairs of Hydrophobic Profiles of Remotely Related Proteins
Comparing Phylogenetic Trees by Matching Nodes Using the Transfer Distance Between Partitions
Asymmetric Cluster-Based Measures for Comparative Phylogenetics
Explaining the Genetic Basis of Complex Quantitative Traits through Prediction Models
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue
On the Number of Saturated and Optimal Extended 2-Regular Simple Stacks in the Nussinov-Jacobson Energy Model
A Branch-and-Cut Approach to Physical Mapping of Chromosomes by Unique End-Probes
A Branch-and-Bound Algorithm for the Molecular Ordered Covering Problem
Protein Folding Prediction in a Cubic Lattice in Hydrophobic-Polar Model
Hybrid Statistical and Mechanistic Mathematical Model Guides Mobile Health Intervention for Chronic Pain
A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast
High Expression of FGF5 Is an Independent Prognostic Factor for Poor Overall Survival and Relapse-Free Survival in Lung Adenocarcinoma
Preface: Special RECOMB 2001 Issue
Supervised Protein Family Classification and New Family Construction
Dissimilarity-Based Algorithms for Selecting Structurally Diverse Sets of Compounds
The Application of Rule-Based Methods to Class Prediction Problems in Genomics
Detection of Complexes in Biological Networks Through Diversified Dense Subgraph Mining
Using Iterative Ridge Regression to Explore Associations Between Conditioned Variables
From Jabberwocky to Genome: Lewis Carroll and Computational Biology
Reconstructing Pathways in Large Genetic Networks from Genetic Perturbations
Non-Homologous Structured CRMs from the Ciona Genome
Fuzzy-Based Identification of Transition Cells to Infer Cell Trajectory for Single-Cell Transcriptomics
An Optimized Method for Bayesian Connectivity Change Point Model
Gene Clustering Based on Clusterwide Mutual Information
Bayesian Segmentation of Protein Secondary Structure
Genome Informatics I: Community Databases
Generating Heterogeneous Data on Gene Trees
An O ( n log n )-Time Algorithm for the Restriction Scaffold Assignment Problem
Improved Harmonic Mean Estimator for Phylogenetic Model Evidence
Solution of Ion Channel Flow Using Immersed Boundary-Lattice Boltzmann Methods
Toward Recovering Allele-specific Cancer Genome Graphs
Automated Gene Identification in Large-Scale Genomic Sequences
Efficient Substructure RMSD Query Algorithms
Locality Sensitive Imputation for Single Cell RNA-Seq Data
Bioinformatics Analysis of Stromal Molecular Signatures Associated with Breast and Prostate Cancer
ALFRED: A Practical Method for Alignment-Free Distance Computation
An Algorithm to Calculate the p -Value of the Monge-Elkan Distance
Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges
Screening Nonlinear miRNA Features of Breast Cancer by Using Ensemble Regularized Polynomial Logistic Regression
Phylogeny Inference Based on Spectral Graph Clustering
Statistical Methods for Analyzing Microarray Feature Data with Replications
Binding Profiles of Chromatin-Modifying Proteins Are Predictive for Transcriptional Activity and Promoter-Proximal Pausing
Temporal Changes in Phosphoglycerate Kinase Coding Sequences: A Quantitative Measure
Integrated Access to Metabolic and Genomic Data
The Information Content of Discrete Functions and Their Application in Genetic Data Analysis
Sample Size for Identifying Differentially Expressed Genes in Microarray Experiments
Differential Expression Analysis in RNA-seq Data Using a Geometric Approach
Evolution of Gene Families Based on Gene Duplication, Loss, Accumulated Change, and Innovation
Inferring Optimal Species Trees in the Presence of Gene Duplication and Loss: Beyond Rooted Gene Trees
DNA Sequence Recognition by Hybridization to Short Oligomers
Background Adjustment for DNA Microarrays Using a Database of Microarray Experiments
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences
Continuous Embeddings of DNA Sequencing Reads and Application to Metagenomics
Node Handprinting: A Scalable and Accurate Algorithm for Aligning Multiple Biological Networks
Biomedical Entity Explorer: A Web Server for Biomedical Entity Exploration
INDEX-db: The Indian Exome Reference Database (Phase I)
Extremal Problems for Topological Indices in Combinatorial Chemistry
GoVec: Gene Ontology Representation Learning Using Weighted Heterogeneous Graph and Meta-Path
Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
Exploring the Landscape of Protein-Ligand Interaction Energy Using Probabilistic Approach
Detecting Periodicities in Eukaryotic Genomes by Ramanujan Fourier Transform
Big Cat Phylogenies, Consensus Trees, and Computational Thinking
Gene Expression Complex Networks: Synthesis, Identification, and Analysis
RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants
Analysis of Variance for Gene Expression Microarray Data
IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly
Novel Few-Shot Learning Neural Network for Predicting Carbohydrate-Active Enzyme Affinity Toward Fructo-Oligosaccharides
Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers
Detecting Non-Uniform Clusters in Large-Scale Interaction Graphs
Strong/Weak Feature Recognition of Promoters Based on Position Weight Matrix and Ensemble Set-Valued Models
ReAligner: A Program for Refining DNA Sequence Multi-Alignments
Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling
Recursive Clustering of Cellular Diversity in scRNA-Seq Data
Shapes of Interacting RNA Complexes
Signature Gene Identification of Cancer Occurrence and Pattern Recognition
An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy
Sensitivity Analysis of Retrovirus HTLV-1 Transactivation
RadSpliceDB: A Comprehensive Database of Radiotherapy Prognosis-Related Splicing Isoforms
Optimization of Restriction Fragment DNA Mapping
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments
On the Complexity of Protein Folding
A Network-Based Method for Predicting Disease-Causing Genes
Fast Protein Folding in the Hydrophobic-Hydrophillic Model within Three-Eights of Optimal
RECOMB 2024 Special Issue
Determining Protein Structures from NOESY Distance Constraints by Semidefinite Programming
Optimizing Metabolite Production with Neighborhood-Based Binary Quantum-Behaved Particle Swarm Optimization and Flux Balance Analysis
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis
Reconstruction of Viral Variants via Monte Carlo Clustering
Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering
The Solution Space of Sorting by DCJ
Descriptive Statistics of the Genome: Phylogenetic Classification of Viruses
Integrated Analysis of an lncRNA-Associated ceRNA Network Reveals Potential Biomarkers for Hepatocellular Carcinoma
A Review of Methods to Quantify the Genomic Similarity of Topological Associating Domains
Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data
An Effective Exact Algorithm and a New Upper Bound for the Number of Contacts in the Hydrophobic-Polar Two-Dimensional Lattice Model
Robust Stochastic Chemical Reaction Networks and Bounded Tau-Leaping
Fragment Collapsing and Splitting While Assembling High-Resolution Restriction Maps
A Graph Approach to Mining Biological Patterns in the Binding Interfaces
An Exponential Example for a Partial Digest Mapping Algorithm
Phenotype Analysis Method for Identification of Gene Functions Involved in Asymmetric Division of Caenorhabditis elegans
From Noise to Knowledge: Diffusion Probabilistic Model-Based Neural Inference of Gene Regulatory Networks
DNASCANNER v2: A Web-Based Tool to Analyze the Characteristic Properties of Nucleotide Sequences
Fidelity of Enzymatic Ligation for DNA Computing
Cross-Organ Transcriptomic Comparison Reveals Universal Factors During Maturation
New Approach for Phylogenetic Tree Recovery Based on Genome-Scale Metabolic Networks
Hardness of Flip-Cut Problems from Optical Mapping
Multivariate Method for Inferential Identification of Differentially Expressed Genes in Gene Expression Experiments
A Practicable Method of Tuning the Noise Intensity at Protein Level
Evaluating the Significance of Protein Functional Similarity Based on Gene Ontology
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models
Geometric Invariant Core for the CL and CH1 Domains of Immunoglobulin Molecules
Discovery of Similar Regions on Protein Surfaces
Identification of Potential Biomarkers for Intervertebral Disc Degeneration Using the Genome-Wide Expression Analysis
Conserved Segment Identification
Applications of Hidden Markov Models for Characterization of Homologous DNA Sequences with a Common Gene
Agrobacterial, Single-Stranded DNA-Binding Protein VirE2 and Its Complexes
Wavelet-Based Functional Clustering for Patterns of High-Dimensional Dynamic Gene Expression
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
Domain Architecture Comparison for Multidomain Homology Identification
Medical Reasoning with Rough-Set Influence Diagrams
Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships
Border Length Minimization Problem on a Square Array
Triplex DNA: RNA, 3′-to-5′ Inverted RNA and Protein Coding in Mitochondrial Genomes
Combining Graph Transformations and Semigroups for Isotopic Labeling Design
Simple Comparative Analyses of Differentially Expressed Gene Lists May Overestimate Gene Overlap
Faster and More Accurate Estimation of Protein Hinges Based on Information Criteria
Enumeration of Extended m -Regular Linear Stacks
Modeling Alternate RNA Structures in Genomic Sequences
Statistical Significance of Optical Map Alignments
A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data
Evolution of DNA or Amino Acid Sequences with Dependent Sites
Gene Expression as a Dosimeter in Irradiated Drosophila melanogaster
Hunting for Trees in Binary Character Sets: Efficient Algorithms for Extraction, Enumeration and Optimization
Distance-Based Reconstruction of Tree Models for Oncogenesis
Building Explainable Graph Neural Network by Sparse Learning for the Drug-Protein Binding Prediction
Multistage Sequencing by Hybridization
Flexible Secondary Structure Based Protein Structure Comparison Applied to the Detection of Circular Permutation
HColonDB: A Database for Human Colon Cancer Research
Unfolding of Microarray Data
Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
LD-SPatt: Large Deviations Statistics for Patterns on Markov Chains
Inference about Recombination from Haplotype Data: Lower Bounds and Recombination Hotspots
Preface Special Issue: 15th International Symposium on Bioinformatics Research and Applications (ISBRA 2019)
Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences
VIPER: Virus Inhibition Via Peptide Engineering and Receptor Mimicry
Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings
Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins
Construction of Physical Maps from Oligonucleotide Fingerprints Data
Preface: 14 th International Conference on Research in Computational Molecular Biology (RECOMB 2010)
Are Grammatical Representations Useful for Learning from Biological Sequence Data? - A Case Study
A Multiscale Algorithm for Spatiotemporal Modeling of Multivalent Protein-Protein Interaction
A Consolidated Approach to Analyzing Data from High-Throughput Protein Microarrays with an Application to Immune Response Profiling in Humans
The Role of Long Non-coding RNA Prostate Cancer-Associated Transcript 1 in Prostate Cancer
IncRna: The R Package for Optimizing lncRNA Identification Processes
An Efficient Algorithm for the Contig Ordering Problem under Algebraic Rearrangement Distance
Continuous Representations of Time-Series Gene Expression Data
RNA Locally Optimal Secondary Structures
The Statistics of Parametrized Syncmers in a Simple Mutation Process Without Spurious Matches
PROuST: A Comparison Method of Three-Dimensional Structures of Proteins Using Indexing Techniques
Finding Genes in DNA with a Hidden Markov Model
AMASS: A Structured Pattern Matching Approach to Shotgun Sequence Assembly
Gene Regulatory Network Inference Using Convolutional Neural Networks from scRNA-seq Data
Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models
An Almost Optimal Algorithm for Generalized Threshold Group Testing with Inhibitors
Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants
Zigzag Stacks and m -Regular Linear Stacks
Delaunay Tessellation of Proteins: Four Body Nearest-Neighbor Propensities of Amino Acid Residues
Identification of Biomarkers Associated with Septic Cardiomyopathy Based on Bioinformatics Analyses
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography
A Transition Probability Model for Amino Acid Substitutions from Blocks
Finding Statistically Significant Repeats in Nucleic Acids and Proteins
Computing with DNA
Design of Biomedical Robots for Phenotype Prediction Problems
Provably Sensitive Indexing Strategies for Biosequence Similarity Search