yusuke1997/dblp-id-title huggingface dataset:
A graph-based approach to auditing RxNorm
A logician's approach to meta-analysis with unexplained heterogeneity
Assessment of the Health IT Usability Evaluation Model (Health-ITUEM) for evaluating mobile health (mHealth) technology
Concept to gain trust for a German personal health record system using public cloud and FHIR
From translational bioinformatics computational methodologies to personalized medicine
A case-based reasoning view of thrombophilia risk
Cimind: A phonetic-based tool for multilingual named entity recognition in biomedical texts
Automatic inference of BI-RADS final assessment categories from narrative mammography report findings
A deep attention model to forecast the Length Of Stay and the in-hospital mortality right on admission from ICD codes and demographic data
Clinical information systems end user satisfaction: The expectations and needs congruencies effects
Implications of non-stationarity on predictive modeling using EHRs
Consistent discovery of frequent interval-based temporal patterns in chronic patients' data
Comparison of reversible-jump Markov-chain-Monte-Carlo learning approach with other methods for missing enzyme identification
Computerized physician order entry and medication errors: Finding a balance
Security and privacy issues in implantable medical devices: A comprehensive survey
Towards an ontological theory of substance intolerance and hypersensitivity
An evaluation of patients' experienced usability of a diabetes mHealth system using a multi-method approach
Active deep learning for the identification of concepts and relations in electroencephalography reports
Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation
ParTRE: A relational triple extraction model of complicated entities and imbalanced relations in Parkinson's disease
Extracting Knowledge from Dynamics in Gene Expression
Developing the FARSEEING Taxonomy of Technologies: Classification and description of technology use (including ICT) in falls prevention studies
Feature-expression heat maps - A new visual method to explore complex associations between two variable sets
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses
Learning patient-specific predictive models from clinical data
An evolutionary Michigan recurrent fuzzy system for nuclei classification in cytological images using nuclear chromatin distribution
Confronting systemic challenges in interoperable medical device safety, security & usability
Translational integrity and continuity: Personalized biomedical data integration
Source authenticity in the UMLS - A case study of the Minimal Standard Terminology
A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
A method for the analysis and visualization of clinical workflow in dynamic environments
Detection of calibration drift in clinical prediction models to inform model updating
Risk prediction using natural language processing of electronic mental health records in an inpatient forensic psychiatry setting
Are we ready for conformance checking in healthcare? Measuring adherence to clinical guidelines: A scoping systematic literature review
A vector-based semantic relatedness measure using multiple relations within SNOMED CT and UMLS
Promotion of active ageing combining sensor and social network data
Textual inference for eligibility criteria resolution in clinical trials
Correspondence analysis of microarray time-course data in case-control design
GIST 2.0: A scalable multi-trait metric for quantifying population representativeness of individual clinical studies
Disambiguation in the biomedical domain: The role of ambiguity type
The NCI Thesaurus quality assurance life cycle
MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework
A generalized kernel machine approach to identify higher-order composite effects in multi-view datasets, with application to adolescent brain development and osteoporosis
Automation of a high risk medication regime algorithm in a home health care population
Decision tool for the early diagnosis of trauma patient hypovolemia
Laparoscopy with augmented reality adaptations
Cloud computing: A new business paradigm for biomedical information sharing
ReHouSED: A novel measurement of Veteran housing stability using natural language processing
Predicting physician burnout using clinical activity logs: Model performance and lessons learned
Trends on the application of serious games to neuropsychological evaluation: A scoping review
A machine learning method for improving liver cancer staging
Drug-drug interaction extraction from biomedical texts using long short-term memory network
Integration of persuasive elements into exergames: Application in the development of a novel gait rehabilitation system for children with musculoskeletal conditions
Classification and knowledge discovery in protein databases
Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S: S62-S70]
Data-driven approach for assessing utility of medical tests using electronic medical records
Identifying cancer sub-types from genomic scale data sets using confidence based integration (CBI)
A nursing perspective to design and implementation of electronic patient record systems
A method for using real world data in breast cancer modeling
Automatic indexing and retrieval of encounter-specific evidence for point-of-care support
Use of Medical Subject Headings (MeSH) in Portuguese for categorizing web-based healthcare content
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort
Chinese clinical named entity recognition with radical-level feature and self-attention mechanism
Estimating redundancy in clinical text
The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network
Beyond the data deluge: Data integration and bio-ontologies
Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups
Negation-based transfer learning for improving biomedical Named Entity Recognition and Relation Extraction
Fair patient model: Mitigating bias in the patient representation learned from the electronic health records
With how many users should you test a medical infusion pump? Sampling strategies for usability tests on high-risk systems
Distributed cognition in the heart room: How situation awareness arises from coordinated communications during cardiac surgery
Authoring and verification of clinical guidelines: A model driven approach
Protein biomarker druggability profiling
Accuracy of Two Dipolar Inverse Algorithms Applying Reciprocity for Forward Calculation
The BMS-LM ontology for biomedical data reporting throughout the lifecycle of a research study: From data model to ontology
Early identification of adverse drug reactions from search log data
Automatic assessment of functional health decline in older adults based on smart home data
Revising regulatory networks: from expression data to linear causal models
Multi-faceted informatics system for digitising and streamlining the reablement care model
Improving the performance of dictionary-based approaches in protein name recognition
Predicting healthcare trajectories from medical records: A deep learning approach
Sparse modelling of cancer patients' survival based on genomic copy number alterations
Application of time series discretization using evolutionary programming for classification of precancerous cervical lesions
An efficient model selection for linear discriminant function-based recursive feature elimination
WoundcareVQA: A multilingual visual question answering benchmark dataset for wound care
Anaphoric reference in clinical reports: Characteristics of an annotated corpus
Federated electronic health records research technology to support clinical trial protocol optimization: Evidence from EHR4CR and the InSite platform
Using online social networks to track a pandemic: A systematic review
An interactive and user-centered computer system to predict physician's disease judgments in discharge summaries
Archimedes: a new model for simulating health care systems--the mathematical formulation
Characteristic attributes in cancer microarrays
Corrigendum to "A novel generalized belief structure comprising unprecisiated uncertainty applied to aphasia diagnosis" [J. Biomed. Inform. 62 (2016) 66-77]
Term identification in the biomedical literature
Repurposing biomedical informaticians for COVID-19
MixEHR-SurG: A joint proportional hazard and guided topic model for inferring mortality-associated topics from electronic health records
Extracting similar terms from multiple EMR-based semantic embeddings to support chart reviews
TRAK ontology: Defining standard care for the rehabilitation of knee conditions
Measuring disease burden with individual cumulative incidence in patients with cirrhosis
Deep representation learning for individualized treatment effect estimation using electronic health records
Innovative approaches to application of information technology in disease surveillance and prevention in Western Kenya
Biclustering on expression data: A review
Mitigation of adverse interactions in pairs of clinical practice guidelines using constraint logic programming
Evaluation of an Enhanced Role-Based Access Control model to manage information access in collaborative processes for a statewide clinical education program
A Machine Learning method for relabeling arbitrary DICOM structure sets to TG-263 defined labels
EGeRepDR: An enhanced genetic-based representation learning for drug repurposing using multiple biomedical sources
Towards an ontological representation of resistance: The case of MRSA
An omics data analysis method based on feature linear relationship and graph convolutional network
The use of bibliography enriched features for automatic citation screening
CASIDE: A data model for interoperable cancer survivorship information based on FHIR
Weight-based multiple empirical kernel learning with neighbor discriminant constraint for heart failure mortality prediction
Outlier detection for patient monitoring and alerting
Meaningful time-related aspects of alerts in Clinical Decision Support Systems. A unified framework
ACDNet: Attention-guided Collaborative Decision Network for effective medication recommendation
StemTextSearch: Stem cell gene database with evidence from abstracts
A systematic approach for developing a corpus of patient reported adverse drug events: A case study for SSRI and SNRI medications
Scalable and efficient on-chain data management in blockchain for large biomedical data
Cluster-based query expansion using external collections in medical information retrieval
Temporal phenotyping of medically complex children via PARAFAC2 tensor factorization
Visualising and quantifying relevant parkinsonian gait patterns using 3D convolutional network
Can technological advancements help to alleviate COVID-19 pandemic? a review
Pattern recognition and prognostic analysis of longitudinal blood pressure records in hemodialysis treatment based on a convolutional neural network
DGCL: Distance-wise and Graph Contrastive Learning for medication recommendation
Integration of Mendelian randomisation and systems biology models to identify novel blood-based biomarkers for stroke
Extracting medication changes in clinical narratives using pre-trained language models
A probabilistic topic model for clinical risk stratification from electronic health records
DW4TR: A Data Warehouse for Translational Research
Automatic address validation and health record review to identify homeless Social Security disability applicants
Logistic regression paradigm for training a single-hidden layer feedforward neural network. Application to gene expression datasets for cancer research
An architecture for linking medical decision-support applications to clinical databases and its evaluation
Exploring hedge identification in biomedical literature
More than just tracking time: Complex measures of user engagement with an internet-based health promotion intervention
Navigating regulatory challenges across the life cycle of a SaMD
Systematic identification of pharmacogenomics information from clinical trials
Sampling methods and feature selection for mortality prediction with neural networks
LGscore: A method to identify disease-related genes using biological literature and Google data
GFD-Net: A novel semantic similarity methodology for the analysis of gene networks
ADSP: An adaptive sample pooling strategy for diagnostic testing
Utilizing online stochastic optimization on scheduling of intensity-modulate radiotherapy therapy (IMRT)
Annotated dataset creation through large language models for non-english medical NLP
Data standards for interoperability of care team information to support care coordination of complex pediatric patients
Controlled searching in reversibly de-identified medical imaging archives
Focused digital cohort selection from social media using the metric backbone of biomedical knowledge graphs
Text mining for pharmacovigilance: Using machine learning for drug name recognition and drug-drug interaction extraction and classification
Decision support from local data: Creating adaptive order menus from past clinician behavior
Embedding of semantic predications
Prediction of anxiety disorders using a feature ensemble based bayesian neural network
Selected Papers from the 2011 Summit on Translational Bioinformatics
HCI for biomedical decision-making: From diagnosis to therapy
Inferring new drug indications using the complementarity between clinical disease signatures and drug effects
Heuristic evaluation of paper-based Web pages: A simplified inspection usability methodology
To err is not entirely human: Complex technology and user cognition
Diagnosis of Alzheimer's disease using hypergraph p-Laplacian regularized multi-task feature learning
Joint learning-based causal relation extraction from biomedical literature
Adjusting for indirectly measured confounding using large-scale propensity score
Direct classification of high-dimensional data in low-dimensional projected feature spaces - Comparison of several classification methodologies
Neuroevolution as a tool for microarray gene expression pattern identification in cancer research
Stabilizing l 1 -norm prediction models by supervised feature grouping
Homology assessment and molecular sequence alignment
Rule-based information extraction from patients' clinical data
A passage retrieval method based on probabilistic information retrieval model and UMLS concepts in biomedical question answering
Chinese medical named entity recognition based on multi-granularity semantic dictionary and multimodal tree
Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology
A sequence-to-sequence model-based deep learning approach for recognizing activity of daily living for senior care
A survey on single and multi omics data mining methods in cancer data classification
Leveraging natural language processing to elucidate real-world clinical decision-making paradigms: A proof of concept study
Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack
FMFilter: A fast model based variant filtering tool
Evolutionary partial differential equations for biomedical image processing
Relational machine learning for electronic health record-driven phenotyping
Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR
Individualized patient-centered lifestyle recommendations: An expert system for communicating patient specific cardiovascular risk information and prioritizing lifestyle options
Formalizing ICD coding rules using Formal Concept Analysis
Identifying and mitigating biases in EHR laboratory tests
Healthcare academic informatics and IT vendors - A modest proposal for a collaborative focus
Overcoming an obstacle in expanding a UMLS semantic type extent
Development and empirical user-centered evaluation of semantically-based query recommendation for an electronic health record search engine
dbAARD & AGP: A computational pipeline for the prediction of genes associated with age related disorders
Decision-making model for early diagnosis of congestive heart failure using rough set and decision tree approaches
Clinical information extraction applications: A literature review
Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy
Improving hospital bed occupancy and resource utilization through queuing modeling and evolutionary computation
FilterK: A new outlier detection method for k-means clustering of physical activity
Rigorous development of prompting dialogues
Infrastructure platform for privacy-preserving distributed machine learning development of computer-assisted theragnostics in cancer
Examining the role of collaboration in studies of health information technologies in biomedical informatics: A systematic review of 25 years of research
DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx
Monitoring stress with a wrist device using context
Making sense: Sensor-based investigation of clinician activities in complex critical care environments
Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network
Exposing the cancer genome atlas as a SPARQL endpoint
Unobtrusive monitoring of behavior and movement patterns to detect clinical depression severity level via smartphone
Digital cough monitoring - A potential predictive acoustic biomarker of clinical outcomes in hospitalized COVID-19 patients
Controlling false match rates in record linkage using extreme value theory
Predictive analytics for step-up therapy: Supervised or semi-supervised learning?
Using phrases and document metadata to improve topic modeling of clinical reports
A new data analysis method based on feature linear combination
A method to evaluate skill transfer and acquisition of obstetric gestures based on the curvatures analysis of the position and the orientation
Impact of an electronic handoff documentation tool on team shared mental models in pediatric critical care
Vaidurya: A multiple-ontology, concept-based, context-sensitive clinical-guideline search engine
Prediction of hypertension risk based on multiple feature fusion
A quantitative assessment of a methodology for collaborative specification and evaluation of clinical guidelines
Explainable discovery of disease biomarkers: The case of ovarian cancer to illustrate the best practice in machine learning and Shapley analysis
A trade-off dual-factor model to investigate discontinuous intention of health app users: From the perspective of information disclosure
The effects of organizational contextual factors on physicians' attitude toward adoption of Electronic Medical Records
An overview of bioinformatics tools for epitope prediction: Implications on vaccine development
Cognitive factors influencing perceptions of clinical documentation tools
An optimization based on simulation approach to the patient admission scheduling problem using a linear programing algorithm
A natural language processing pipeline for pairing measurements uniquely across free-text CT reports
Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports
Concept placement using BERT trained by transforming and summarizing biomedical ontology structure
Applications of artificial intelligence to aid early detection of dementia: A scoping review on current capabilities and future directions
Using voice to create hospital progress notes: Description of a mobile application and supporting system integrated with a commercial electronic health record
Using machine learning to selectively highlight patient information
Proxy endpoints - bridging clinical trials and real world data
GraphFusion: Integrative prediction of drug synergy using multi-scale graph representations and cell line contexts
Imputation of missing aggregate EHR audit log data across individual and multiple organizations
Dynamic strategy for personalized medicine: An application to metastatic breast cancer
Using Linked Data for polarity classification of patients' experiences
PISTON: Predicting drug indications and side effects using topic modeling and natural language processing
A semi-automatic method for quantification and classification of erythrocytes infected with malaria parasites in microscopic images
A framework and its empirical study of automatic diagnosis of traditional Chinese medicine utilizing raw free-text clinical records
Cognitive Informatics in Health and Biomedicine: Case Studies on Critical Care, Complexity, and Errors, Vimla L. Patel, David R. Kaufman, Trevor Cohen (Eds.). Springer, London (2014). 505 pages
A downsampling method enables robust clustering and integration of single-cell transcriptome data
Feature selection techniques for maximum entropy based biomedical named entity recognition
Long-distance disorder-disorder relation extraction with bootstrapped noisy data
Pseudo-labeling and knowledge-guided contrastive learning for radiology report generation
Leveraging undecided cases in chart-reviewed phenotypes to enhance EHR-based association studies
Biomedical document-level relation extraction with thematic capture and localized entity pooling
Evaluating collaborative features of critical care systems: A methodological study of information technology in surgical intensive care units
Validating the semantics of a medical iconic language using ontological reasoning
Clinical Trial Information Mediator
An ontological model of the practice transformation process
A data-driven approach to optimizing clinical study eligibility criteria
Selecting relevant features from the electronic health record for clinical code prediction
Computational prediction of therapeutic peptides based on graph index
Multi-method laboratory user evaluation of an actionable clinical performance information system: Implications for usability and patient safety
Computer-based genealogy reconstruction in founder populations
A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept
An automated technique for identifying associations between medications, laboratory results and problems
Special issue on dialog systems for health communication
Internet of Things in active cancer Treatment: A systematic review
Impacts of sample weighting on transferability of risk prediction models across EHR-Linked biobanks with different recruitment strategies
A Web platform for the interactive visualization and analysis of the 3D fractal dimension of MRI data
A hierarchical knowledge-based approach for retrieving similar medical images described with semantic annotations
The PACIFIC ontology for heterogeneous data management in cardiology
Cognitive engineering and health informatics: Applications and intersections
Cognitive informatics in biomedicine and healthcare
A cloud-based mobile system to improve respiratory therapy services at home
Interoperability of clinical decision-support systems and electronic health records using archetypes: A case study in clinical trial eligibility
ADENER: A syntax-augmented grid-tagging model for Adverse Drug Event extraction in social media
PheValuator: Development and evaluation of a phenotype algorithm evaluator
Creating a database for health IT events via a hybrid deep learning model
Mining patterns in disease classification forests
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data
Open source platform for collaborative construction of wearable sensor datasets for human motion analysis and an application for gait analysis
A Scientific Software Product Line for the Bioinformatics domain
Toward assessing clinical trial publications for reporting transparency