yusuke1997/dblp-id-title huggingface dataset:
Dynamical Principles of Two-Component Genetic Oscillators
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
Detection of Functional Modes in Protein Dynamics
Transcriptional Dynamics of the Embryonic Stem Cell Switch
scTrans: Sparse attention powers fast and accurate cell type annotation in single-cell RNA-seq data
Nowcasting the 2022 mpox outbreak in England
Insight into glucocorticoid receptor signalling through interactome model analysis
A Stochastic View of Spliceosome Assembly and Recycling in the Nucleus
Continuous Attractors with Morphed/Correlated Maps
Ten rules for a structural bioinformatic analysis
Predicting the functional impact of KCNQ1 variants with artificial neural networks
A Functional Cartography of Cognitive Systems
Detecting similar binding pockets to enable systems polypharmacology
Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection
A population of bang-bang switches of defective interfering particles makes within-host dynamics of dengue virus controllable
Structural Control of Metabolic Flux
Public Baseline and shared response structures support the theory of antibody repertoire functional commonality
A Neurodynamic Account of Spontaneous Behaviour
Maximization of Learning Speed in the Motor Cortex Due to Neuronal Redundancy
Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map
Flow-Based Cytometric Analysis of Cell Cycle via Simulated Cell Populations
Chemical Basis of Metabolic Network Organization
Likelihood-Based Inference of B Cell Clonal Families
A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism
Ten Simple Rules for Writing Research Papers
Toward an optimal contraception dosing strategy
A quantitative physical model of the TMS-induced discharge artifacts in EEG
Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets
A scale-free analysis of the HIV-1 genome demonstrates multiple conserved regions of structural and functional importance
Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules
Barriers to Diffusion in Dendrites and Estimation of Calcium Spread Following Synaptic Inputs
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset
Input correlations impede suppression of chaos and learning in balanced firing-rate networks
Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells
Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features
Continuous Attractor Network Model for Conjunctive Position-by-Velocity Tuning of Grid Cells
Temperature sensitive contact modes allosterically gate TRPV3
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium
Using prototyping to choose a bioinformatics workflow management system
Complex Parameter Landscape for a Complex Neuron Model
Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection
Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods
A linear pathway for inositol pyrophosphate metabolism revealed by 18O labeling and model reduction
Recurrent neural networks that learn multi-step visual routines with reinforcement learning
Impact of Stoichiometry Representation on Simulation of Genotype-Phenotype Relationships in Metabolic Networks
Estimating HIV-1 Fitness Characteristics from Cross-Sectional Genotype Data
Unsupervised discovery of dynamic cell phenotypic states from transmitted light movies
SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data
Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism
Structural Adaptation and Heterogeneity of Normal and Tumor Microvascular Networks
Biophysical Properties of Intrinsically Disordered p130Cas Substrate Domain - Implication in Mechanosensing
Enhancing reinforcement learning models by including direct and indirect pathways improves performance on striatal dependent tasks
Inductive Game Theory and the Dynamics of Animal Conflict
Ten quick tips for building FAIR workflows
A Bayesian approach to incorporate structural data into the mapping of genotype to antigenic phenotype of influenza A(H3N2) viruses
Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers
A steady-state model of microbial acclimation to substrate limitation
Simulating Properties of In Vitro Epithelial Cell Morphogenesis
Conformational Sampling and Nucleotide-Dependent Transitions of the GroEL Subunit Probed by Unbiased Molecular Dynamics Simulations
Estimating incidence of infection from diverse data sources: Zika virus in Puerto Rico, 2016
Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics
Towards a more general understanding of the algorithmic utility of recurrent connections
Wagers for work: Decomposing the costs of cognitive effort
A robust transfer learning approach for high-dimensional linear regression to support integration of multi-source gene expression data
Modeling multi-sensory feedback control of zebrafish in a flow
Ten Simple Rules for a Good Poster Presentation
Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases
Epitope Flexibility and Dynamic Footprint Revealed by Molecular Dynamics of a pMHC-TCR Complex
Slope-Based Stochastic Resonance: How Noise Enables Phasic Neurons to Encode Slow Signals
A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data
The Dynamics of Naturally Acquired Immunity to Plasmodium falciparum Infection
A linear discriminant analysis model of imbalanced associative learning in the mushroom body compartment
A model of Notch signalling control of angiogenesis: Evidence of a role for Notch ligand heterodimerization
Computational design and interpretation of single-RNA translation experiments
A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation
Generating synthetic population for simulating the spatiotemporal dynamics of epidemics
mRNA/protein sequence complementarity and its determinants: The impact of affinity scales
A Mathematical Framework for Protein Structure Comparison
A lipophilicity-based energy function for membrane-protein modelling and design
A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries
When Can Species Abundance Data Reveal Non-neutrality?
miRTex: A Text Mining System for miRNA-Gene Relation Extraction
Basis profile curve identification to understand electrical stimulation effects in human brain networks
The ability to classify patients based on gene-expression data varies by algorithm and performance metric
Real Time Multiplicative Memory Amplification Mediated by Whole-Cell Scaling of Synaptic Response in Key Neurons
When two are better than one: Modeling the mechanisms of antibody mixtures
The attentive reconstruction of objects facilitates robust object recognition
Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication
Modeling the Impact of White-Plague Coral Disease in Climate Change Scenarios
Calcium Signals Driven by Single Channel Noise
An Entropic Mechanism of Generating Selective Ion Binding in Macromolecules
Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach
Ten simple rules to ruin a collaborative environment
AWGE-ESPCA: An edge sparse PCA model based on adaptive noise elimination regularization and weighted gene network for Hermetia illucens genomic data analysis
The Effect of Bacterial Recombination on Adaptation on Fitness Landscapes with Limited Peak Accessibility
Drug repurposing based on a quantum-inspired method versus classical fingerprinting uncovers potential antivirals against SARS-CoV-2
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
Neural network and kinetic modelling of human genome replication reveal replication origin locations and strengths
Hydrodynamic Radii of Intrinsically Disordered Proteins Determined from Experimental Polyproline II Propensities
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells
Neural correlates of sparse coding and dimensionality reduction
Red blood cells stabilize flow in brain microvascular networks
A Detailed Data-Driven Network Model of Prefrontal Cortex Reproduces Key Features of In Vivo Activity
A New Perceptual Bias Reveals Suboptimal Population Decoding of Sensory Responses
Direct Correlation between Motile Behavior and Protein Abundance in Single Cells
Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions
A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
Pulsed low-energy stimulation initiates electric turbulence in cardiac tissue
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data
Public surface disinfection every 2 hours can reduce the infection risk of norovirus in airports up to 83%
Correction: Enhanced Regulatory Sequence Prediction Using Gapped k -mer Features
Correction: Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer
Combining Fungal Biopesticides and Insecticide-Treated Bednets to Enhance Malaria Control
OpenCap: Human movement dynamics from smartphone videos
Mechanistic framework predicts drug-class specific utility of antiretrovirals for HIV prophylaxis
Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells
Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance
Learning receptive field properties of complex cells in V1
Combination and competition between path integration and landmark navigation in the estimation of heading direction
Ten simple rules for good leadership
Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions
Reverse Engineering of Oxygen Transport in the Lung: Adaptation to Changing Demands and Resources through Space-Filling Networks
Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge
Computational Biology in Argentina
The Quantitative Methods Boot Camp: Teaching Quantitative Thinking and Computing Skills to Graduate Students in the Life Sciences
Systematically understanding the immunity leading to CRPC progression
Apollo: Democratizing genome annotation
Ethical Challenges of Big Data in Public Health
Tying the knot: Unraveling the intricacies of the coronavirus frameshift pseudoknot
Knowledge-based Fragment Binding Prediction
CellDynaMo-stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly
Controlling target brain regions by optimal selection of input nodes
Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas
Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
Self-organized traffic via priority rules in leaf-cutting ants
BioLINK Special Interest Group Session on the Future of Scientific Publishing
Ten simple rules for helping newcomers become contributors to open projects
Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers
A single-cell spiking model for the origin of grid-cell patterns
Optimizing Metapopulation Sustainability through a Checkerboard Strategy
Inference of annealed protein fitness landscapes with AnnealDCA
Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons
Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore
A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression
Differential Expression Analysis for Pathways
Transmission thresholds for the spread of infections in healthcare facilities
Parameter uncertainty quantification using surrogate models applied to a spatial model of yeast mating polarization
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
Qualia: The Geometry of Integrated Information
Exact conditions for evolutionary stability in indirect reciprocity under noise
Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks
Ten Simple Rules for Aspiring Scientists in a Low-Income Country
Neural Development Features: Spatio-Temporal Development of the Caenorhabditis elegans Neuronal Network
EEG microstate transition cost correlates with task demands
Modulation of signaling cross-talk between pJNK and pAKT generates optimal apoptotic response
Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution
Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment
Fast and accurate influenza forecasting in the United States with Inferno
SEMbap: Bow-free covariance search and data de-correlation
Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transition
Geometrical and Mechanical Properties Control Actin Filament Organization
Ten simple rules for making a software tool workflow-ready
Chapter 9: Analyses Using Disease Ontologies
Power-Law Dynamics of Membrane Conductances Increase Spiking Diversity in a Hodgkin-Huxley Model
FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution
Probing the Limits to MicroRNA-Mediated Control of Gene Expression
riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data
Investigating the Consequences of Interference between Multiple CD8 + T Cell Escape Mutations in Early HIV Infection
Evaluating epidemic forecasts in an interval format
Dependencies among Editing Sites in Serotonin 2C Receptor mRNA
A mechanistic model of in vitro plasma activation to evaluate therapeutic kallikrein-kinin system inhibitors
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
Effect of Glycosylation on an Immunodominant Region in the V1V2 Variable Domain of the HIV-1 Envelope gp120 Protein
Telling ecological networks apart by their structure: An environment-dependent approach
Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders
Multi-targeting of K-Ras domains and mutations by peptide and small molecule inhibitors
Deriving time-concordant event cascades from gene expression data: A case study for Drug-Induced Liver Injury (DILI)
Inverse tissue mechanics of cell monolayer expansion
Emergence and fragmentation of the alpha-band driven by neuronal network dynamics
Hyperbolic Planforms in Relation to Visual Edges and Textures Perception
Calcium phosphate precipitation inhibits mitochondrial energy metabolism
Trends in SARS-CoV-2 infection prevalence during England's roadmap out of lockdown, January to July 2021
Bayesian regression explains how human participants handle parameter uncertainty
A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation
Hippocampal CA1 Ripples as Inhibitory Transients
Induced fit with replica exchange improves protein complex structure prediction
A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes
Stable developmental patterns of gene expression without morphogen gradients
An Extra Dimension to Decision-Making in Animals: The Three-way Trade-off between Speed, Effort per-Unit-Time and Accuracy
Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic
Neural Sequence Generation Using Spatiotemporal Patterns of Inhibition
Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach
Discrete modeling for integration and analysis of large-scale signaling networks
Receptive field sizes and neuronal encoding bandwidth are constrained by axonal conduction delays
Physiology-informed regularisation enables training of universal differential equation systems for biological applications
Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis
Comprehensive Modelling of the Neurospora Circadian Clock and Its Temperature Compensation
Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions
Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes - Divide and Conquer
dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data
lncreased risk of slippage upon disengagement of the mitotic checkpoint
A Multimodal Connectionist Architecture for Unsupervised Grounding of Spatial Language
Action Recognition with a Multi-View Temporal Attention Network
Large Group Decision-Making Method Based on Social Network Analysis: Integrating Evaluation Information and Trust Relationships
Image Retrieval Using Multilayer Feature Aggregation Histogram
NeuroInteract: An Innovative Deep Learning Strategy for Effective Drug Repositioning in Schizophrenia Therapy
GSAC-UFormer: Groupwise Self-Attention Convolutional Transformer-Based UNet for Medical Image Segmentation
On Automatic Diagnosis of Alzheimer's Disease Based on Spontaneous Speech Analysis and Emotional Temperature
Reducing and Stretching Deep Convolutional Activation Features for Accurate Image Classification
Deep Nonlinear Ensemble Framework for Stock Index Forecasting and Uncertainty Analysis
A Novel Technique for Detecting Plagiarism in Documents Exploiting Information Sources
Shift-Reduce Task-Oriented Semantic Parsing with Stack-Transformers
A Novel Approach for Detecting Anomalous Energy Consumption Based on Micro-Moments and Deep Neural Networks
A Computability Argument Against Superintelligence
PDD: Pruning Neural Networks During Knowledge Distillation
Speaker-Characterized Emotion Recognition using Online and Iterative Speaker Adaptation
Predicting Eye Fixations on Complex Visual Stimuli Using Local Symmetry
Distant Supervised Construction and Evaluation of a Novel Dataset of Emotion-Tagged Social Media Comments in Spanish
Establishment of Cognitive Relations Based on Cognitive Informatics
Group Decision Making with Dual Hesitant Fuzzy Preference Relations
Parallel Hybrid CNN-KELM and Attention-Guided Pyramid Transformer Networks for Efficient Fruit Image Classification and Segmentation
An Adaptive Genetic-Based Incremental Architecture for the On-Line Coordination of Embedded Agents
A Novel Method for Human-Vehicle Recognition Based on Wireless Sensing and Deep Learning Technologies
The Cognitive Makeup of Writing: Multivariate Analysis of Writing Impairments Following Stroke
Trusted Autonomy and Cognitive Cyber Symbiosis: Open Challenges
Connotation in Computational Creativity
Assessing Mobile and Smart Technology Applications for Active and Healthy Aging using a Fuzzy Collaborative Intelligence Approach
A Correlation-Based Spiking Neural Network for Motion Boundary Detection and Segmentation in Dynamic Visual Sequences
Time-Scale Feature Extractions for Emotional Speech Characterization
Deep Learning-Driven Automated Detection of COVID-19 from Radiography Images: a Comparative Analysis
An Enhanced Interactive and Multi-criteria Decision-Making (TODIM) Method with Probabilistic Dual Hesitant Fuzzy Sets for Risk Evaluation of Arctic Geopolitics
A Two-Stage Methodology Using K-NN and False-Positive Minimizing ELM for Nominal Data Classification
The Role of Attention in the Context of Associative Memory
A New Biologically Inspired Fuzzy Expert System-Based Voiced/Unvoiced Decision Algorithm for Speech Enhancement
A Joint Unsupervised Cross-Domain Model via Scalable Discriminative Extreme Learning Machine
3-Way Concept Analysis Based on 3-Valued Formal Contexts
Quantitative Susceptibility Mapping in Cognitive Decline: A Review of Technical Aspects and Applications
Gathering and Retaining Visual Information Over Recurring Fixations: A Model
COV19-CNNet and COV19-ResNet: Diagnostic Inference Engines for Early Detection of COVID-19
A Review of Key Technologies for Emotion Analysis Using Multimodal Information
Application of Explainable Artificial Intelligence in Autism Spectrum Disorder Detection
Probing Fundamental Visual Comprehend Capabilities on Vision Language Models via Visual Phrases from Structural Data
A Cognitive Computation Fallacy? Cognition, Computations and Panpsychism
Removal of Electrooculogram Artifacts from Electroencephalogram Using Canonical Correlation Analysis with Ensemble Empirical Mode Decomposition
C-Loss-Based Doubly Regularized Extreme Learning Machine
Public Mood-Driven Asset Allocation: the Importance of Financial Sentiment in Portfolio Management
Deep Non-linear and Unbiased Deep Decisive Pooling Learning-Based Opinion Mining of Customer Review
Global Selection of Features for Nonlinear Dynamics Characterization of Emotional Speech
Social Aspects of Entrainment in Spoken Interaction
Course Recommendation based on Sequences: An Evolutionary Search of Emerging Sequential Patterns
A Possible Explanation for the Generation of Habit in Navigation: a Striatal Behavioral Learning Model
Neural 'Bubble' Dynamics Revisited
OISVM: Optimal Incremental Support Vector Machine-based EEG Classification for Brain-computer Interface Model
Online Signature Recognition: A Biologically Inspired Feature Vector Splitting Approach
A Grouping Cooperative Differential Evolution Algorithm for Solving Partially Separable Complex Optimization Problems
Autocorrelation of the Speech Multi-Scale Product for Voicing Decision and Pitch Estimation
Cognitive Processes in Eye Guidance: Algorithms for Attention in Image Processing
Intuitionistic Fuzzy Three-Factor Ratio Models and Multi-preference Fusion
Cognition and Emotion: Perspectives of a Closing Gap
q-Rung Orthopair Fuzzy Soft Rough Aggregation Operators and Similarity to Ideal Solution Method Using Hamacher Operations for Solving Decision-Making Problems: A Case Study in Food Waste Treatment Technology Selection
Free-Head Gaze Estimation with Deep Learning
3D Object Recognition Based on Some Aspects of the Infant Vision System and Associative Memory
ReUS: a Real-time Unsupervised System For Monitoring Opinion Streams
The Strange and Promising Relationship Between EEG and AI Methods of Analysis
Exploring Influence of Different Emotions on Decision-Making by Analyzing the Temporal, Spatial, and Spectral Domains of EEG
Normal Template Mapping: An Association-Inspired Handwritten Character Recognition Model
Improvements on Correlation Coefficients of Hesitant Fuzzy Sets and Their Applications
The Mind's Chorus: Creativity Before Consciousness
Hierarchical Osprey Residual Attentional Soft Capsule Citrus Model (HORASC 2 M) for Citrus Plant Disease Classification