yusuke1997/dblp-id-title huggingface dataset:
An efficient error correction algorithm using FM-index
A comprehensive survey of scoring functions for protein docking models
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach
GNNs and ensemble models enhance the prediction of new sRNA-mRNA interactions in unseen conditions
GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes
Software: an open-source and scalable framework for exact calculations in coalescent theory
Site-specific impacts on gene expression and behavior in fathead minnows ( Pimephales promelas ) exposed in situ to streams adjacent to sewage treatment plants
Application of dynamic topic models to toxicogenomics data
A topological algorithm for identification of structural domains of proteins
A consolidation algorithm for genomes fractionated after higher order polyploidization
Sample size calculation for microarray experiments with blocked one-way design
Deep learning, radiomics and radiogenomics applications in the digital breast tomosynthesis: a systematic review
Systematic feature evaluation for gene name recognition
sitePath: a visual tool to identify polymorphism clades and help find fixed and parallel mutations
Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization
iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
Chemistry in Bioinformatics
Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework
Systems biology approach to identification of biomarkers for metastatic progression in cancer
Prediction of peptide drift time in ion mobility-mass spectrometry
Comparing a few SNP calling algorithms using low-coverage sequencing data
The Gap Procedure: for the identification of phylogenetic clusters in HIV-1 sequence data
JACUSA: site-specific identification of RNA editing events from replicate sequencing data
Effective automated pipeline for 3D reconstruction of synapses based on deep learning
Efficacy of different protein descriptors in predicting protein functional families
High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status
Computational comparison of common event-based differential splicing tools: practical considerations for laboratory researchers
MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements
Empirical validation of the S-Score algorithm in the analysis of gene expression data
On the attenuation and amplification of molecular noise in genetic regulatory networks
Predicting RNA sequence-structure likelihood via structure-aware deep learning
A global $Anopheles\ gambiae$ gene co-expression network constructed from hundreds of experimental conditions with missing values
SeqWare Query Engine: storing and searching sequence data in the cloud
MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation
JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories
Exploring deep learning methods for recognizing rare diseases and their clinical manifestations from texts
BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
Multi-allelic positional Burrows-Wheeler transform
A Novel Biclustering Algorithm for the Discovery of Meaningful Biological Correlations between microRNAs and their Target Genes
A novel efficient drug repurposing framework through drug-disease association data integration using convolutional neural networks
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin
Core Hunter II: Fast core subset selection based on multiple genetic diversity measures using Mixed Replica Search
End-to-end learning for compound activity prediction based on binding pocket information
RCMAT: a regularized covariance matrix approach to testing gene sets
Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
Application of artificial intelligence ensemble learning model in early prediction of atrial fibrillation
A user-centred evaluation framework for the Sealife semantic web browsers
LincRNA ZNF529-AS1 inhibits hepatocellular carcinoma via FBXO31 and predicts the prognosis of hepatocellular carcinoma patients
N-gram analysis of 970 microbial organisms reveals presence of biological language models
A new method of finding groups of coexpressed genes and conditions of coexpression
Molecular ecological network analyses
Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server
Fine-grained parallelization of fitness functions in bioinformatics optimization problems: gene selection for cancer classification and biclustering of gene expression data
Correction: genetic algorithm learning as a robust approach to RNA editing site site prediction
XML-based approaches for the integration of heterogeneous bio-molecular data
Multi-template matching: a versatile tool for object-localization in microscopy images
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays
A multispecies polyadenylation site model
Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets
Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports
Improving the quality of protein structure models by selecting from alignment alternatives
Differential expression analysis with inmoose, the integrated multi-omic open-source environment in Python
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript
The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases
Using the multi-objective optimization replica exchange Monte Carlo enhanced sampling method for protein-small molecule docking
Multi-objective optimization for RNA design with multiple target secondary structures
Exploring the 2D and 3D structural properties of topologically associating domains
Algorithms for locating extremely conserved elements in multiple sequence alignments
Identification of trans-eQTLs using mediation analysis with multiple mediators
Predicting virus mutations through statistical relational learning
iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis
Application of Wavelet Packet Transform to detect genetic polymorphisms by the analysis of inter-Alu PCR patterns
ENIGMA-Viewer: interactive visualization strategies for conveying effect sizes in meta-analysis
iIL13Pred: improved prediction of IL-13 inducing peptides using popular machine learning classifiers
Physicochemical property consensus sequences for functional analysis, design of multivalent antigens and targeted antivirals
NPCMF: Nearest Profile-based Collaborative Matrix Factorization method for predicting miRNA-disease associations
SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes
VarSight: prioritizing clinically reported variants with binary classification algorithms