yusuke1997/dblp-id-title huggingface dataset:
Automated interpretable discovery of heterogeneous treatment effectiveness: A COVID-19 case study
Automatic recognition of disorders, findings, pharmaceuticals and body structures from clinical text: An annotation and machine learning study
Unsupervised machine learning for the discovery of latent disease clusters and patient subgroups using electronic health records
Multi-site study of surgical practice in neurosurgery based on surgical process models
Multiple features for clinical relation extraction: A machine learning approach
Unsupervised concept extraction from clinical text through semantic composition
State of the nation in data integration for bioinformatics
Prognostic models of in-hospital mortality of intensive care patients using neural representation of unstructured text: A systematic review and critical appraisal
ZK DrugResist 2.0: A TextMiner to extract semantic relations of drug resistance from PubMed
Pre-training phenotyping classifiers
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions
ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes
Content based medical image retrieval using topic and location model
When to re-order laboratory tests? Learning laboratory test shelf-life
Personalized long-term prediction of cognitive function: Using sequential assessments to improve model performance
Auditing consistency and usefulness of LOINC use among three large institutions - Using version spaces for grouping LOINC codes
MedGCN: Medication recommendation and lab test imputation via graph convolutional networks
Semantic relation extraction aware of N-gram features from unstructured biomedical text
Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review
The epidemiology of liver disease in Tayside database: a population-based record-linkage study
The clinician in the Driver's Seat: Part 1 - A drag/drop user-composable electronic health record platform
Visual grids for managing data completeness in clinical research datasets
Translating medical terminologies through word alignment in parallel text corpora
EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models
Mind the clinical-analytic gap: Electronic health records and COVID-19 pandemic response
Terminologies augmented recurrent neural network model for clinical named entity recognition
Interactive dual-stream contrastive learning for radiology report generation
Proteomic Feature Maps: A new visualization approach in proteomics analysis
Uncovering influence links in molecular knowledge networks to streamline personalized medicine
Spatio-temporally smoothed deep survival neural network
Developing EHR-driven heart failure risk prediction models using CPXR(Log) with the probabilistic loss function
Paradoxes of professionalism and error in complex systems
Letter to the Editor: FHIR RDF - Why the world needs structured electronic health records
Using game authoring platforms to develop screen-based simulated functional assessments in persons with executive dysfunction following traumatic brain injury
Learning probabilistic phenotypes from heterogeneous EHR data
Complementary ensemble clustering of biomedical data
Evaluating pointwise reliability of machine learning prediction
Coherence and comprehensibility: Large language models predict lay understanding of health-related content
Health Information Exchange, Brian E. Dixon. Elsevier/Academic Press, Cambridge, MA (2016). 361pp. ISBN: 978-0-12-803135-3
Balancing volume and duration of information consumption by physicians: The case of health information exchange in critical care
Visual comprehension and orientation into the COVID-19 CIDO ontology
An efficient architecture to support digital pathology in standard medical imaging repositories
The United Hospital Fund meeting on evaluating health information exchange
Machine learning for holistic visualization of STEMI registry data
Hiding clinical information in medical images: A new high capacity and reversible data hiding technique
Distributed learning from multiple EHR databases: Contextual embedding models for medical events
Towards the automatic calculation of the EQUAL Candida Score: Extraction of CVC-related information from EMRs of critically ill patients with candidemia in Intensive Care Units
Continuous time recurrent neural networks: Overview and benchmarking at forecasting blood glucose in the intensive care unit
Temporal electronic phenotyping by mining careflows of breast cancer patients
A data-driven framework of typical treatment process extraction and evaluation
Realistic 3D infant head surfaces augmentation to improve AI-based diagnosis of cranial deformities
PKDE4J: Entity and relation extraction for public knowledge discovery
User-centered design improves the usability of drug-drug interaction alerts: Experimental comparison of interfaces
Machine learning applications related to suicide in military and Veterans: A scoping literature review
Rule-based support system for multiple UMLS semantic type assignments
Improving entity recognition using ensembles of deep learning and fine-tuned large language models: A case study on adverse event extraction from VAERS and social media
Interpretable statistical modeling of patient flow in emergency departments
Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods
Selected Papers from the 2011 Summit on Clinical Research Informatics
Automated identification of adverse events related to central venous catheters
Measuring the quality of patient-physician communication
Opportunities and challenges of behavior change support systems for enhancing habit formation: A qualitative study
Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources
Contextual information contributes to biomedical named entity normalization
A comprehensive review of feature based methods for drug target interaction prediction
Clinical Knowledge and Practice in the Information Age: A Handbook for Health Professionals
Supporting topic modeling and trends analysis in biomedical literature
Supplementing claims data analysis using self-reported data to develop a probabilistic phenotype model for current smoking status
Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model
Analysis of Complex Decision-Making Processes in Health Care: Cognitive Approaches to Health Informatics
A graph-based approach for characterizing resident and nurse handoff conversations
SNOMED CT module-driven clinical archetype management
Dynamic sub-ontology evolution for traditional Chinese medicine web ontology
Automatic identification of high impact articles in PubMed to support clinical decision making
ViPal: A framework for virulence prediction of influenza viruses with prior viral knowledge using genomic sequences
Realization of simulations for blinded internal pilot study based on web
Improving hospital readmission prediction using individualized utility analysis
Improving diagnostic accuracy using EHR in emergency departments: A simulation-based study
A framework for patient-centered telemedicine: Application and lessons learned from vulnerable populations
A Comparison of Machine Learning Methods for the Diagnosis of Pigmented Skin Lesions
Multi-level process mining methodology for exploring disease-specific care processes
Medical errors as a result of specialization
Variational temporal deconfounder network for individualized treatment effect estimation with longitudinal observational data
Alternative classification of identical concepts in different terminologies: Different ways to view the world
INSMA: An integrated system for multimodal data acquisition and analysis in the intensive care unit
Privacy preserving collaborative learning of generalized linear mixed model
A web-based intervention to support increased physical activity among at-risk adults
Treatment selection for life-critical shared decision making under ranges of health-state utility scenarios
Participatory design with children in the development of a support system for patient-centered care in pediatric oncology
A novel gluten knowledge base of potential biomedical and health-related interactions extracted from the literature: Using machine learning and graph analysis methodologies to reconstruct the bibliome
Annotating social determinants of health using active learning, and characterizing determinants using neural event extraction
Visualization and evaluation of clusters for exploratory analysis of gene expression data
Longitudinal analysis of discussion topics in an online breast cancer community using convolutional neural networks
Breakthroughs in genomics data integration for predicting clinical outcome
Onto-clust - A methodology for combining clustering analysis and ontological methods for identifying groups of comorbidities for developmental disorders
A deep learning-based, unsupervised method to impute missing values in electronic health records for improved patient management
Is standard multivariate analysis sufficient in clinical and epidemiological studies?
Information system design for a hospital emergency department: A usability analysis of software prototypes
Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis
Real-time prediction of organ failures in patients with acute pancreatitis using longitudinal irregular data
Secondary use of electronic health records for building cohort studies through top-down information extraction
Serum cancer biomarker discovery through analysis of gene expression data sets across multiple tumor and normal tissues
From image to report: automating lung cancer screening interpretation and reporting with vision-language models
Predicting morbidity by local similarities in multi-scale patient trajectories
Discovering signature disease trajectories in pancreatic cancer and soft-tissue sarcoma from longitudinal patient records
Using natural language processing to provide personalized learning opportunities from trainee clinical notes
Automated enhancement of description logic-defined terminologies to facilitate mapping to ICD9-CM
Dual-level diagnostic feature learning with recurrent neural networks for treatment sequence recommendation
MultiADE: A Multi-domain benchmark for Adverse Drug Event extraction
The Arden Syntax standard for clinical decision support: Experiences and directions
MultiWD: Multi-label wellness dimensions in social media posts
Identifying social determinants of health from clinical narratives: A study of performance, documentation ratio, and potential bias
Understanding random resampling techniques for class imbalance correction and their consequences on calibration and discrimination of clinical risk prediction models
Comparative evaluation of the heterozygous variant standard deviation as a quality measure for next-generation sequencing
Enhancing reuse of structured eligibility criteria and supporting their relaxation
Classifying individuals based on a densely captured sequence of vital signs: An example using repeated blood pressure measurements during hemodialysis treatment
Comparing efficient data structures to represent geometric models for three-dimensional virtual medical training
Dynamic assessment of the COVID-19 vaccine acceptance leveraging social media data
Simplifying the use of pharmacogenomics in clinical practice: Building the genomic prescribing system
Practical comparison of aberration detection algorithms for biosurveillance systems
A deep learning approach for transgender and gender diverse patient identification in electronic health records
Patient-level analysis of outcomes using structured labor and delivery data
The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data
Trends in informatics publications and health policy
Design patterns for the development of electronic health record-driven phenotype extraction algorithms
Virtual interactive suturing for the Fundamentals of Laparoscopic Surgery (FLS)
Patient data discovery platforms as enablers of biomedical and translational research: A systematic review
Variation in monitoring: Glucose measurement in the ICU as a case study to preempt spurious correlations
Effective matching of patients to clinical trials using entity extraction and neural re-ranking
Novel cross LSTM for predicting the changes of complementary pelvic angles between standing and sitting
A multi-feature deep learning system to enhance glaucoma severity diagnosis with high accuracy and fast speed
Use of Stratified Cascade Learning to predict hospitalization risk with only socioeconomic factors
Search and visualization of gene-drug-disease interactions for pharmacogenomics and precision medicine research using GeneDive
Handbook of Human Factors in Medical Device Design, Matthew B. Weinger, Michael E. Wiklund, Daryle J. Gardner-Bonneau (Eds.). CRC Press, New York, NY (2010). 844 pp., ISBN-10: 0805856277
Automated detection of medication administration errors in neonatal intensive care
The value of parsing as feature generation for gene mention recognition
Analysis of the relationship between treatment networks and the evolution of patients with Type 2 Diabetes Mellitus
ZiMM: A deep learning model for long term and blurry relapses with non-clinical claims data
Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents
A standard-driven approach for electronic submission to pharmaceutical regulatory authorities
Semi-supervised learning of the electronic health record for phenotype stratification
Multi-objective optimization formulation for Alzheimer's disease trial patient selection
Concept and implementation of a study dashboard module for a continuous monitoring of trial recruitment and documentation
Temporal patterns selection for All-Cause Mortality prediction in T2D with ANNs
Healthcare hashtag index development: Identifying global impact in social media
Recovery at the edge of error: Debunking the myth of the infallible expert
Automated identification of analyzable metaphase chromosomes depicted on microscopic digital images
Stress detection in daily life scenarios using smart phones and wearable sensors: A survey
Information extraction from biomedical text
Leveraging health informatics to foster a smart systems response to health disparities and health equity challenges
Probabilistic broken-stick model: A regression algorithm for irregularly sampled data with application to eGFR
A recent advance in the automatic indexing of the biomedical literature
The inference of breast cancer metastasis through gene regulatory networks
Information infrastructure for inter-organizational mental health services: An actor network theory analysis of psychiatric rehabilitation
A maintenance hemodialysis mortality prediction model based on anomaly detection using longitudinal hemodialysis data
LSCDFS-MKL: A multiple kernel based method for lung squamous cell carcinomas disease-free survival prediction with pathological and genomic data
Question-aware transformer models for consumer health question summarization
Using Markov chains and temporal alignment to identify clinical patterns in Dementia
A classification of errors in lay comprehension of medical documents
A machine learning approach for automating review of a RxNorm medication mapping pipeline output
MolCFL: A personalized and privacy-preserving drug discovery framework based on generative clustered federated learning
Single-reviewer electronic phenotyping validation in operational settings: Comparison of strategies and recommendations
Opportunities for incorporating intersectionality into biomedical informatics
Identifying cooperating cancer driver genes in individual patients through hypergraph random walk
LFVDNet: Low-frequency variable-driven network for medical time series
Combining multi-criteria decision analysis and mini-health technology assessment: A funding decision-support tool for medical devices in a university hospital setting
Introduction: named entity recognition in biomedicine
Corrigendum to 'Learning from heterogeneous temporal data in electronic health records'. [J. Biomed. Inform. 65 (2017) 105-119]
Retrospective data collection and analytical techniques for patient safety studies
Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?
Multi-modal fusion model for Time-Varying medical Data: Addressing Long-Term dependencies and memory challenges in sequence fusion
Consumer-mediated health information exchanges: The 2012 ACMI debate
Prediction of mortality in Intensive Care Units: a multivariate feature selection
An informatics approach to examine decision-making impairments in the daily life of individuals with depression
Personas in online health communities
An innovative portal for rare genetic diseases research: The semantic Diseasecard
Methods of Cognitive Analysis to Support the Design and Evaluation of Biomedical Systems: The Case of Clinical Practice Guidelines
TAHDNet: Time-aware hierarchical dependency network for medication recommendation
Statistical process control for validating a classification tree model for predicting mortality - A novel approach towards temporal validation
Generating disease-pertinent treatment vocabularies from MEDLINE citations
Summarizing clinical pathways from event logs
PASCLex: A comprehensive post-acute sequelae of COVID-19 (PASC) symptom lexicon derived from electronic health record clinical notes
Phenotype risk scores (PheRS) for pancreatic cancer using time-stamped electronic health record data: Discovery and validation in two large biobanks
Deep ensemble learning for Alzheimer's disease classification
Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses
A Language-Guided Progressive Fusion Network with semantic density alignment for Medical Visual Question Answering
StarBRITE: The Vanderbilt University Biomedical Research Integration, Translation and Education portal
User-centered design of multi-gene sequencing panel reports for clinicians
Predicting microRNA modulation in human prostate cancer using a simple String IDentifier (SID1.0)
Predictive combinations of monitor alarms preceding in-hospital code blue events
FreeViz - An intelligent multivariate visualization approach to explorative analysis of biomedical data
ELII: A novel inverted index for fast temporal query, with application to a large Covid-19 EHR dataset
The SWAN biomedical discourse ontology
Guilt-by-association feature selection: Identifying biomarkers from proteomic profiles
An innovative privacy preserving technique for incremental datasets on cloud computing
Using the PARAFAC2 tensor factorization on EHR audit data to understand PCP desktop work
Integrating retrospective quality assessment with real-time guideline application to support the episodic application of clinical guidelines over significant time periods
A study of entity-linking methods for normalizing Chinese diagnosis and procedure terms to ICD codes
An ontology of randomized controlled trials for evidence-based practice: content specification and evaluation using the competency decomposition method
Strategies for secondary use of real-world clinical and administrative data for outcome ascertainment in pragmatic clinical trials
Promoting smartphone-based keratitis screening using meta-learning: A multicenter study
Enabling the use of hereditary information from pedigree tools in medical knowledge-based systems
Toward rapid learning in cancer treatment selection: An analytical engine for practice-based clinical data
Literature mining on pharmacokinetics numerical data: A feasibility study
Scaling and contextualizing personalized healthcare: A case study of disease prediction algorithm integration
Bimodal fuzzy analytic hierarchy process (BFAHP) for coronary heart disease risk assessment
What is data stewardship? Towards a comprehensive understanding
Using HL7 FHIR to achieve interoperability in patient health record
MysiRNA: Improving siRNA efficacy prediction using a machine-learning model combining multi-tools and whole stacking energy (ΔG)
Tailoring task arithmetic to address bias in models trained on multi-institutional datasets
Making pharmacogenomic-based prescribing alerts more effective: A scenario-based pilot study with physicians
Integrating cancer diagnosis terminologies based on logical definitions of SNOMED CT concepts
A comparison of models for predicting early hospital readmissions
Developing and testing a discrete event simulation model to evaluate budget impacts of diabetes prevention programs
Dynamic detection of window starting positions and its implementation within an activity recognition framework
Software tools for simultaneous data visualization and T cell epitopes and disorder prediction in proteins
Relief-based feature selection: Introduction and review
Detecting glaucomatous change in visual fields: Analysis with an optimization framework
Computational frameworks integrating deep learning and statistical models in mining multimodal omics data
Demonstration-based learning for few-shot biomedical named entity recognition under machine reading comprehension
Content-specific auditing of a large scale anatomy ontology
Editorial: Methodological Review
A comparative study of covariance selection models for the inference of gene regulatory networks
A context-aware approach for progression tracking of medical concepts in electronic medical records
MixEHR-Guided: A guided multi-modal topic modeling approach for large-scale automatic phenotyping using the electronic health record
Schema driven assignment and implementation of life science identifiers (LSIDs)
Workflow modeling in critical care: Piecing together your own puzzle
NEAR: Named entity and attribute recognition of clinical concepts
Electronic Medical Records: A Guide for Clinicians and Administrators.
Developing, implementing, and evaluating decision support systems for shared decision making in patient care: a conceptual model and case illustration
Designing metaschemas for the UMLS enriched semantic network
The new European interoperability framework as a facilitator of digital transformation for citizen empowerment
A micro-analytic approach to understanding electronic health record navigation paths
Web-based tool for injury risk assessment of foreign body injuries in children
A corpus to support eHealth Knowledge Discovery technologies
A data mining framework for time series estimation
Deep imputation of missing values in time series health data: A review with benchmarking
Representation of evidence-based clinical practice guideline recommendations on FHIR
Formalizing the Austrian Procedure Catalogue: A 4-step methodological analysis approach
IMA: Identifying disease-related genes using MeSH terms and association rules
Using distant supervised learning to identify protein subcellular localizations from full-text scientific articles
An ontology-based personalization of health-care knowledge to support clinical decisions for chronically ill patients
A trajectory-informed model for detecting drug-drug-host interaction from real-world data
Phylogenetics in the modern era
Data integration through canonical correlation analysis and its application to OMICs research
Utilizing social media data for pharmacovigilance: A review
Evaluating semantic similarity and relatedness over the semantic grouping of clinical term pairs
Clinical trial search: Using biomedical language understanding models for re-ranking
Improving biomedical Named Entity Recognition with additional external contexts
Learning the progression patterns of treatments using a probabilistic generative model
Modeling asynchronous event sequences with RNNs
Automated annotation of disease subtypes
Formative feedback generation in a VR-based dental surgical skill training simulator
A novel method based on physicochemical properties of amino acids and one class classification algorithm for disease gene identification