yusuke1997/dblp-id-title huggingface dataset:
Enzyme-free and DNA-based universal platform for the construction of various logic devices based on graphene oxide and G-quadruplex
A faster SPACFIL
Iterated Sequence Databank Search Methods
Genomic distribution and possible functional roles of putative G-quadruplex motifs in two subspecies of Oryza sativa
A method to improve the prediction performance of cancer-gene association by screening negative training samples through gene network data
Identification and dissection of prostate cancer grounded on fatty acid metabolism-correlative features for predicting prognosis and assisting immunotherapy
Recursive Computation of Hamiltonian Matrix Elements Using Harmonic Oscillator Eigenfunctions: Application to the Inversion of Ammonia and to the Methyl Torsion + Aldehydic Hydrogen Wagging of Acetaldehyde
Unveiling therapeutic potential: In Silico discovery of prognostic markers and potential inhibitors for TGFßR1 in pancreatic cancer
Design and Evaluation of a Versatile Single Board Computer for Embedded Applications in Scientific Instrumentation
An enhancement of multi-scope topological graph pooling and representation learning with attention for molecular graph classification
Quantum-level machine learning calculations of Levodopa
Computational identification and characterization of primate-specific microRNAs in human genome
Calculator programs for NMR ABX analyses
An Explicit Eighth-order Method with Minimal Phase-lag for Accurate Computations of Eigenvalues, Resonances and Phase Shifts
Computational insight into dengue virus NS2B-NS3 protease inhibition: A combined ligand- and structure-based approach
Application of Machine Learning (ML) approach in discovery of novel drug targets against Leishmania: A computational based approach
Hybrid prediction model with improved score level fusion for heart disease diagnosis
Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis
Oxidatively-mediated in silico epimerization of a highly amyloidogenic segment in the human calcitonin hormone (hCT 15-19 )
Machine Learnable Fold Space Representation based on Residue Cluster Classes
Targeting the RARα-Gankyrin-PI3K axis with retinoid analogs to modulate autophagy in breast cancer cells: Computational insights and experimental validation
Genome wide characterization of the SERK/SERL gene family in Phalaenopsis equestris, Dendrobium catenatum and Apostasia shenzhenica (Orchidaceae)
A New Algorithm for Analysis of the Homology in Protein Primary Structure
ProCoCoA: A quantitative approach for analyzing protein core composition
Speciation of Complexes By Lotus 1-2-3
BAT-Net: An enhanced RNA Secondary Structure prediction via bidirectional GRU-based network with attention mechanism
A Graph-theoretic Method to Identify Candidate Mechanisms for Deriving the Rate Law of a Catalytic Reaction
Novel 1,4 benzothiazine 3-one derivatives as anticonvulsant agents: Design, synthesis, biological evaluation and computational studies
NF κ B pathway analysis: An approach to analyze gene co-expression networks employing feedback cycles
Role of surface-exposed charged basic amino acids (Lys, Arg) and guanidination in insulin on the interaction and stability of insulin-insulin receptor complex
Sub-structure-based screening and molecular docking studies of potential enteroviruses inhibitors
DFT/TD-DFT calculations, spectroscopic characterizations (FTIR, NMR, UV-vis), molecular docking and enzyme inhibition study of 7-benzoyloxycoumarin
Alkylated benzimidazoles: Design, synthesis, docking, DFT analysis, ADMET property, molecular dynamics and activity against HIV and YFV
CABIN: Collective Analysis of Biological Interaction Networks
Quantitative Perturbational Molecular Orbital Analysis of the Conformational Preference of Aniline Molecule and Its Intramolecular Force
Bioinformatics - From Genomes to Drugs: 2 Volume Set; Thomas Lengauer (Ed.), 680 pages
In silico study of selective inhibition mechanism of S-adenosyl-L-methionine analogs for human DNA methyltransferase 3A
A Simple Formula for the Calculation of the Wiener Index of Hexagonal Chains
DERL3 functions as a tumor suppressor in gastric cancer
Network regularised Cox regression and multiplex network models to predict disease comorbidities and survival of cancer
Atcoor: A program for calculation and utilization of molecular atomic doordinates from bond parameters
Identifying microRNAs involved in cancer pathway using support vector machines
Rare variants analysis by risk-based variable-threshold method
Pharmacophore anchor models of ATAT1 to discover potential inhibitors and lead optimization
SE-BLTCNN: A channel attention adapted deep learning model based on PSSM for membrane protein classification
Analysis of aging-related protein interactome and cross-network module comparisons across tissues provide new insights into aging
Survey on phylogenetic tree construction using machine learning
The Application of Object-oriented Programming to Monte Carlo Experiments on Beams of Phonons in Crystals
Identification of immunosenescence of unconventional T cells in hepatocellular carcinoma
GC/MS analysis and computational evaluation of C. cinerea EO constituents for colorectal cancer: Molecular docking, dynamics, and quantum chemical insights into Cis-Verbenyl acetate
RNA-Seq analysis reveals pluripotency-associated genes and their interaction networks in human embryonic stem cells
Determination of Vibrational Energy Distribution in Excited Molecules From Experimental Data. New Program and Test
Predicting distant metastatic sites of cancer using perturbed correlations of miRNAs with competing endogenous RNAs
Knowledge enhanced attention aggregation network for medicine recommendation
ITS 2 and RNA secondary structure-based analysis reveals a clear picture on phylogeny of South Indian Salacia spp
Zinc C293 as a novel scaffold with dual activity against HIV-1 integrase and reverse transcriptase
The conditional mutual information-based single-sample network biomarker approach reveals the critical transition moments of disease progression
Microcomputer Program for the Determination of Curves Characterizing the Texture of Microporous Adsorbents
The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises
Estimating sufficient statistics in co-evolutionary analysis by mutual information
An Algorithm for Monte Carlo Modeling of Degradation of Polymer Networks
The cross-species prediction of bacterial promoters using a support vector machine
A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP)
Generative artificial intelligence and large language models in smart healthcare applications: Current status and future perspectives
Matrix-diagonalization with a programmable calculator
Elucidation of chemosensitization effect of acridones in cancer cell lines: Combined pharmacophore modeling, 3D QSAR, and molecular dynamics studies
Self-organizing map of gene regulatory networks for cell phenotypes during reprogramming
Advances in systems biology - New trends and perspectives
Generation and comparison of space-filling molecular models
Estimating Local Backbone Structural Deviation in Homology Models
In silico drug re-purposing against African sleeping sickness using GlcNAc-PI de-N-acetylase as an experimental target
Genome re-seqeunce and analysis of Burkholderia glumae strain AU6208 and evidence of toxoflavin: A potential bacterial toxin
Black seed (Nigella sativa) extract enhances early and late apoptosis through activation of caspase-3 mediated regulatory pathway in LC540 cells: A network pharmacological and molecular docking approach
An emerging technique for reducing the response time in plant miRNA identification
Time Shift Artifacts and Start-up Protocols with the BDF Method in Electrochemical Digital Simulation
In silico approach to identify non-synonymous SNPs in human obesity related gene, MC3R (melanocortin-3-receptor)
Integrating multiple sequence features for identifying anticancer peptides
Unlimited data acquisition at moderately high sampling frequencies with a microcomputer
Identification of imidazole-based small molecules to combat cognitive disability caused by Alzheimer's disease: A molecular docking and MD simulations based approach
Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks
SARS-CoV-2 3CLpro whole human proteome cleavage prediction and enrichment/depletion analysis
Deciphering histone code of transcriptional regulation in malaria parasites by large-scale data mining
Prediction of protein structural classes by a new measure of information discrepancy
An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
Predictive models for tyrosinase inhibitors: Challenges from heterogeneous activity data determined by different experimental protocols
Prediction and verification of microRNAs related to proline accumulation under drought stress in potato
A general method for finding principal resonance structures for conjugated systems by semi-random searching of an adjacency matrix
A review of Cloud computing technologies for comprehensive microRNA analyses
WHNMR - A Universal NMR Application Package
An algorithm for determining possible empirical formulae of chemical compounds
GAN-based novel feature selection approach with hybrid deep learning for heartbeat classification from ECG signal
Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern
Theoretical study on the DNA interaction properties of copper(II) complexes
New Electrotopological Descriptor for Prediction of Boiling Points of Alkanes and Aliphatic Alcohols Through Artificial Neural Network and Multiple Linear Regression Analysis
Computer-aided identification of natural lead compounds as cyclooxygenase-2 inhibitors using virtual screening and molecular dynamic simulation
Integral Re-use in the Numerical Calculation of Vibrational Frequencies in Ab Initio SCF Programs
SARS-CoV-2: Can sunlight exposure reduce the risk of developing severe consequences of COVID-19?
Exploring the impact of CYP11A1 's missense SNPs on the interaction between CYP11A1 and cholesterol: A comprehensive structural analysis and MD simulation study
Repurposing approved drugs as potential inhibitors of 3CL-protease of SARS-CoV-2: Virtual screening and structure based drug design
Bessel and Neumann-fitted Methods for the Numerical Solution of the Radial Schrödinger Equation
Competition between Ag + and Ni 2+ in nickel enzymes: Implications for the Ag + antibacterial activity
Study of Precipitant Systems by Computerised Simulation. Influence of Optical Elements on the Noise Associated with the Transmittance
A kinetic model with analysis for the oxidation of sugars by permanganate in simple aqueous media with sustainable fractional approach
A global report on the dynamics of COVID-19 with quarantine and hospitalization: A fractional order model with non-local kernel
KINAL - a program package for kinetic analysis of reaction mechanisms
The Difficulty of Identifying Genes in Anonymous Vertebrate Sequences
Computer Simulation Studies of Recombination of Ions in Multi Ion-pair Ensembles--II. Processes Characterized By Long Mean Free Paths of Charged Species
Automated Statistical Analysis of High Temperature and Pressure Vibrating Tube Densimeter Data
Inter-chain contact prediction based on Mamba and triangular geometric constraints
Current Theories of Neuronal Information Processing Performed By Ca2+/Calmodulin-dependent Protein Kinase II with Support and Insights From Computer Modelling and Simulation
Incorporating time as a third dimension in transcriptomic analysis using machine learning and explainable AI
Enumeration of Kekulé Structures in Polyradical Polyhexes
Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms
V(D)J Recombinase Precursors and Coding Structure of Signal Sequence Directed Rearrangement
New aspects of dynamical damping in ab initio molecular SCF calculations
Detection of Eukaryotic Promoters Using Markov Transition Matrices
A machine learning-based glycolysis and fatty acid metabolism-related prognostic signature is constructed and identified ACSL5 as a novel marker inhibiting the proliferation of breast cancer
Cysteine proteases secreted by the pinewood nematode, Bursaphelenchus xylophilus : In silico analysis
Matrix Stability of the Backward Differentiation Formula in Electrochemical Digital Simulation
Fast Bidirectional NMR Data Transfer Between the Bruker Aspect 3000and a Personal Computer
SUMONA: A supervised method for optimizing network alignment
Symmetry considerations in Markovian chemicals 'in silico' design (MARCH-INSIDE) I: central chirality codification, classification of ACE inhibitors and prediction of \sigma-receptor antagonist activities
In silico analysis of Pax6 protein glycosylation in vertebrates
Genome-wide identification, functional and evolutionary analysis of terpene synthases in pineapple
Mathematical and computational concepts in chemistry : Edited by Nenad Trinajsti, Ellis Horwood, Chichester, 1986. ISBN 0-85312-934-7, 365 pages plus index
PLM-IL4: Enhancing IL-4-inducing peptide prediction with protein language model
Towards Understanding Life Itself
Amyloid β fibrils disruption by kolaviron: Molecular docking and extended molecular dynamics simulation studies
Unraveling the mechanism of l-gulonate-3-dehydrogenase inhibition by ascorbic acid: Insights from molecular modeling
Swarm intelligence based clustering technique for automated lesion detection and diagnosis of psoriasis
Anticancer SAR establishment and novel accruing signal transduction model of drug action using biscoumarin scaffold
Molecular dynamics and high throughput binding free energy calculation of anti-actin anticancer drugs - New insights for better design
Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
Dealing with repetitions in sequencing by hybridization
Applications section : Desk top microcomputer evaluation of the rate constants of two competitive parallel second order reactions
Robust identification of significant interactions between toxicogenomic biomarkers and their regulatory chemical compounds using logistic moving range chart
iEnhancer-DS: Attention-based improved densenet for identifying enhancers and their strength
Theoretical Approaches to the Analysis of Homeobox Gene Evolution
Combination of pharmacophore modeling and 3D-QSAR analysis of potential glyoxalase-I inhibitors as anticancer agents
Franck-Condon Analyses on a Personal Computer: Quadratic Coupling, Linear Coupling, and Line Broadening
Auxiliary programs for operating with large matrices I : Data processing in sequential order
Structure-based design and evaluation of novel N-phenyl-1H-indol-2-amine derivatives for fat mass and obesity-associated (FTO) protein inhibition
Interaction of the prototypical α-ketoamide inhibitor with the SARS-CoV-2 main protease active site in silico: Molecular dynamic simulations highlight the stability of the ligand-protein complex
Using the least squares capability of a hand calculator and graphical aids tofit polynomiafs to curves or data
Effect of the R119G mutation on human P5CR structure and its interactions with NAD: Insights derived from molecular dynamics simulation and free energy analysis
Accurate and Efficient Computation of -functions with Complex Arguments
Rational design of hyper-glycosylated human luteinizing hormone analogs (a bioinformatics approach)
POAP: A GNU parallel based multithreaded pipeline of open babel and AutoDock suite for boosted high throughput virtual screening
Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences
Marine derived compounds as binders of the White spot syndrome virus VP28 envelope protein: In silico insights from molecular dynamics and binding free energy calculations
Putative dual inhibitors of Janus kinase 1 and 3 (JAK1/3): Pharmacophore based hierarchical virtual screening
Machine learning optimization of cross docking accuracy
Optimal peeling order for pedigrees with incomplete genotypic information
The modularity and dynamicity of miRNA-mRNA interactions in high-grade serous ovarian carcinomas and the prognostic implication
Electronic structure and long-range interaction in androstanes
Ensemble-based, high-throughput virtual screening of potential inhibitor targeting putative farnesol dehydrogenase of Metisa plana (Lepidoptera: Psychidae)
Identifying key genes against rutin on human colorectal cancer cells via ROS pathway by integrated bioinformatic analysis and experimental validation
Congo Red Bound to -1-Proteinase Inhibitor As a Model of Supramolecular Ligand and Protein Complex
Interpretable lung cancer risk prediction using ensemble learning and XAI based on lifestyle and demographic data
Comparing two K-category assignments by a K-category correlation coefficient
ResBiGAAT: Residual Bi-GRU with attention for protein-ligand binding affinity prediction
Development and validation of AI-driven multi-omics language models for cancer genomics: A comprehensive review
Comprehensive analysis of the large and small ribosomal proteins in breast cancer: Insights on proteomic and transcriptomic expression patterns, regulation, mutational landscape, and prognostic significance
How do the protonation states of E296 and D312 in OmpF and D299 and D315 in homologous OmpC affect protein structure and dynamics? Simulation studies
Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
A diskette-microprocessor emulator replacement for paper tape peripherals in an educational laboratory minicomputer system
Genome-wide analysis of NAC transcription factors and their response to abiotic stress in celery ( Apium graveolens L.)
PREOPT-W: Off-line Optimization of Binary Gradient Separations in HPLC By Simulation - III. Phase 2and the Objective Functions
Comparative genome based cis- elements analysis in the 5′ upstream and 3′ downstream region of cell wall invertase and Phenylalanine ammonia lyase in Nicotiana benthamiana
Computer enumeration of substituted polyhexes
High-throughput virtual screening of Streptomyces spp. metabolites as antiviral inhibitors against the Nipah virus matrix protein
Systematic investigation of sequence and structural motifs that recognize ATP
Phytochemical profiling, human insulin stability and alpha glucosidase inhibition of Gymnema latifolium leaves aqueous extract: Exploring through experimental and in silico approach
A method of microarray data storage using array data type
The calculation of time-correlation functions for extended molecular systems
Multi-omics data integration and analysis pipeline for precision medicine: Systematic review
Complexity measures for the evolutionary categorization of organisms
Numerical Stability of Finite Difference Algorithms for Electrochemical Kinetic Simulations. Matrix Stability Analysis of the Classic Explicit, Fully Implicit and Crank-Nicolson Methods, Extended to the 3- and 4-point Gradient Approximation at the Electrodes
A New Numerical Procedure to Determine the VLE Curve
Solution of simultaneous equilibria
L'etude des signaux de 13C PAR microordinateur un programme simple et rapide
FrAdadelta-CSA: Fractional Adadelta Chameleon Swarm Algorithm-based feature selection with SpikeGoogle-DenseNet for epileptic seizure detection
Methylation signature genes identification of cancers occurrence and pattern recognition
A novel feature selection for RNA-seq analysis
Molecular docking studies, charge transfer excitation and wave function analyses (ESP, ELF, LOL) on valacyclovir : A potential antiviral drug
Visualization Methods in Analysis of Detailed Chemical Kinetics Modelling
E4ITD: A general FORTRAN implementation of the 4IT algorithm
Incorporating deep learning and multi-omics autoencoding for analysis of lung adenocarcinoma prognostication
Comparative receptor surface analysis of octopaminergic antagonists for the locust neuronal octopamine receptor
A fast computer program for conformational analysis
XP-GCN: Extreme learning machines and parallel graph convolutional networks for high-throughput prediction of blood-brain barrier penetration based on feature fusion
An open set model for pest identification
Inverse weighting method with jackknife variance estimator for differential expression analysis of single-cell RNA sequencing data
On obtaining energy parameters from crystal structure data
Data Fitting in the Chemical Sciences, by the Method of Least Squares : by PETER GANS. Wiley, New York (1992). ISBN 0-471-93412-7; 258 Pp. Including Index and Contents
MiR-330-3p and miR-485-5p as biomarkers for glioblastoma: An integrated bioinformatics and experimental study
Genetic Bee Colony (GBC) algorithm: A new gene selection method for microarray cancer classification
Non-equilibrium Proteins
Vibrational Energy Levels and Vibronic Structure of Electronic Spectra in Molecules with Large Amplitude Motions
Prediction of potential deleterious nonsynonymous single nucleotide polymorphisms of HIF1A gene: A computational approach
Applications programs : A generalized calculation for preparation of buffer solutions of known ionic strength
Investigating ego modules involved in TGFβ3-induced chondrogenesis in mesenchymal stem cells based on ego network
Convolutional Neural Network approach to classify mitochondrial morphologies
Large-scale mining co-expressed genes in Arabidopsis anther: From pair to group
Lung cancer detection and classification using optimized CNN features and Squeeze-Inception-ResNeXt model
Novel BDNF-regulatory microRNAs in neurodegenerative disorders pathogenesis: An in silico study
In silico modeling for dual inhibition of acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE) enzymes in Alzheimer's disease
A novel approach for dimension reduction of microarray
CoMFA, CoMSIA, Topomer CoMFA, HQSAR, molecular docking and molecular dynamics simulations study of triazine morpholino derivatives as mTOR inhibitors for the treatment of breast cancer
Computational studies on N-phenyl pyrrole derivatives as MmpL3 inhibitors in Mycobacterium tuberculosis
Artificial Neural Networks Applied to Odor Classification for Chemical Compounds
Application of a New Rotation Matrix in Dynamic Solid State ESR and NMR Lineshape Simulation
A bioinformatic analysis: Previous allergen exposure may support anti- SARS-CoV-2 immune response
Use of a novel Hill-climbing genetic algorithm in protein folding simulations
Gene teams: a new formalization of gene clusters for comparative genomics
Consensus in silico computational modelling of the p22 phox subunit of the NADPH oxidase
Identification of miR159s and their target genes and expression analysis under drought stress in potato
Computationally guided design and synthesis of pyrimidine-oxazole hybrids as novel antidiabetic agents: kinetic and molecular interaction studies
GC-PGE: A novel deep learning model for tumor drug resistance prediction and core resistance gene extraction based on graph and signaling pathways
A new retrieval system for infrared spectra
Computational insights into TLR4/MD2 interactions with dengue NS1 proteins: Serotype-specific binding and immune response
Exploring the reactivity landscape of bioactive peptides using conceptual DFT and molecular modeling tools
A post-decoding re-ranking algorithm for predicting interacting residues in proteins with hidden Markov models incorporating long-distance information
Fast detection of high-order epistatic interactions in genome-wide association studies using information theoretic measure
3D-QSAR studies of some reversible Acetyl cholinesterase inhibitors based on CoMFA and ligand protein interaction fingerprints using PC-LS-SVM and PLS-LS-SVM
Predicting the evolution of number of native contacts of a small protein by using deep learning approach