yusuke1997/dblp-id-title huggingface dataset:
From frequency to pitch, and from pitch class to musical key: shared principles of learning and perception
Complex Connectionist Dynamics and the Limited Complexity of the Resulting Functions
Safe transductive support vector machine
A review of: "Neurons and Symbols: The Stuff That Mind is Made Of "I. Aleksander & H. Morton, 1993 London: Chapman & Hall
Probabilistic region growing method for improving magnetic resonance image segmentation
Meter as Mechanism: A Neural Network Model that Learns Metrical Patterns
ERAM-EE: Efficient resource allocation and management strategies with energy efficiency under fog-internet of things environments
Stanislavsky's system as an enactive guide to embodied cognition?
Competitive Learning and its Application in Adaptive Vision for Autonomous Mobile Robots
Socially grounded game strategy enhances bonding and perceived smartness of a humanoid robot
Toward open-ended evolutionary robotics: evolving elementary robotic units able to self-assemble and self-reproduce
Perceptually Grounded Language Learning: Part 2 - DETE: A Neural/Procedural Model
Processing of nested and cross-serial dependencies: an automaton perspective on SRN behaviour
Emergence of communication in embodied agents: co-adapting communicative and non-communicative behaviours
Secure smart grid implementation with automatic data integrity attack location prediction and exalted energy theft detection
Evolution of cooperation driven by the diversity of emotions
Analysis and synthesis of Cohen-Grossberg networks with asymmetric connections
On the identification and establishment of topological spatial relations by autonomous systems
A privacy-preserving and efficient data sharing scheme with trust authentication based on blockchain for mHealth
Autonomous intelligent cars: proof that the EPSRC Principles are future-proof
SQL queries over encrypted databases: a survey
How can we explain the emergence of a language that benefits the hearer but not the speaker?
Model cortical responses for the detection of perceptual onsets and beat tracking in singing
A fuzzy irregular cellular automata-based method for the vertex colouring problem
Swarmic autopoiesis and computational creativity
Maximum saliency bias in binocular fusion
A text classification method based on a convolutional and bidirectional long short-term memory model
Featureless robot navigation using optical flow
Respective demands of task and function allocation on human-machine co-operation design: a psychological approach
ReinforceAdapt: multi-objective approach for environmental adaptation method
Binding and multiple instantiation in a distributed network of spiking nodes
Rapporteur's report
Signal fingerprint feature extraction and recognition method for communication satellite
Affective robotics - modelling emotion and motivation
Robots are not just tools
A feature selection method with feature ranking using genetic programming
High capacity associative memories and connection constraints
An efficient and DoS-resilient name lookup for NDN interest forwarding
Legal vs. ethical obligations - a comment on the EPSRC's principles for robotics
Exploring the usability of the text-based CAPTCHA on tablet computers
CFSE: a Chinese short text classification method based on character frequency sub-word enhancement
Predicting Anticancer Drug Response With Deep Learning Constrained by Signaling Pathways
The Effect of Mutations in the TPR and Ankyrin Families of Alpha Solenoid Repeat Proteins
Predicted B Cell Epitopes Highlight the Potential for COVID-19 to Drive Self-Reactive Immunity
Urinary based biomarkers identification and genetic profiling in Parkinson's disease: a systematic review of metabolomic studies
CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities
Machine learning enhanced cell tracking
In silico discovery of biomarkers for the accurate and sensitive detection of Fusarium solani
Ten common issues with reference sequence databases and how to mitigate them
Deep convolutional neural networks using an active learning strategy for cervical cancer screening and diagnosis
Editorial: Machine learning approaches to antimicrobials: discovery and resistance
Pangenome comparison via ED strings
Streptomyces sp. VITGV156 secondary metabolite binds pathogenic protein PBP2a and Beta-lactamase
EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive
Computational identification and characterization of chitinase 1 and chitinase 2 from neotropical isolates of Beauveria bassiana
Before and after AlphaFold2: An overview of protein structure prediction
Unlocking the potential of in silico approach in designing antibodies against SARS-CoV-2
Protein domains provide a new layer of information for classifying human variations in rare diseases
A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures
Predicting cell population-specific gene expression from genomic sequence
A Novel Calibration Step in Gene Co-Expression Network Construction
NetRank Recovers Known Cancer Hallmark Genes as Universal Biomarker Signature for Cancer Outcome Prediction
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs
CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin
In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays
Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data
Naview: A d3.js Based JavaScript Library for Drawing and Annotating Voltage-Gated Sodium Channels Membrane Diagrams
SETH predicts nuances of residue disorder from protein embeddings
Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation
Interactive, Visual Simulation of a Spatio-Temporal Model of Gas Exchange in the Human Alveolus
bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses
Detection of reproducible liver cancer specific ligand-receptor signaling in blood
Maximum-scoring path sets on pangenome graphs of constant treewidth
New Approach to Accelerated Image Annotation by Leveraging Virtual Reality and Cloud Computing
Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum
The Importance of Weakly Co-Evolving Residue Networks in Proteins is Revealed by Visual Analytics
3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism
Visualization of automatically combined disease maps and pathway diagrams for rare diseases
The druggable genome: Twenty years later
Innovative CDR grafting and computational methods for PD-1 specific nanobody design
Molecular dynamic simulations to assess the structural variability of ClpV from Enterobacter cloacae
The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders
Visual analysis of multi-omics data
In silico approach to identify microsatellite candidate biomarkers to differentiate the biovar of Corynebacterium pseudotuberculosis genomes
Machine learning approaches for predicting protein-ligand binding sites from sequence data
Diagnostic AI Modeling and Pseudo Time Series Profiling of AD and PD Based on Individualized Serum Proteome Data
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling
Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses
Protein-lipid interactions and protein anchoring modulate the modes of association of the globular domain of the Prion protein and Doppel protein to model membrane patches
A Machine Learning Framework Predicts the Clinical Severity of Hemophilia B Caused by Point-Mutations
NeighborNet: improved algorithms and implementation
ModEx: a general purpose computer model exploration system
The promises of large language models for protein design and modeling
Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach
Corrigendum: A review on deep learning applications in highly multiplexed tissue imaging data analysis
Pathway Tools Management of Pathway/Genome Data for Microbial Communities
Integrated bioinformatics analysis to explore potential therapeutic targets and drugs for small cell carcinoma of the esophagus
Improved Mobilome Delineation in Fragmented Genomes
Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio
Orthogonal analysis of variants in APOE gene using in-silico approaches reveals novel disrupting variants
Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning
Antibody Class(es) Predictor for Epitopes (AbCPE): A Multi-Label Classification Algorithm
Comparison of phasor analysis and biexponential decay curve fitting of autofluorescence lifetime imaging data for machine learning prediction of cellular phenotypes
Better research software tools to elevate the rate of scientific discovery or why we need to invest in research software engineering
Summary Visualizations of Gene Ontology Terms With GO-Figure!
Computational identification of antibody-binding epitopes from mimotope datasets
Using short-read 16S rRNA sequencing of multiple variable regions to generate high-quality results to a species level
Enhancer/gene relationships: Need for more reliable genome-wide reference sets
Editorial: Expert Opinions in Network bioinformatics: 2022
Editorial: Towards genome interpretation: Computational methods to model the genotype-phenotype relationship
genomeSidekick: A user-friendly epigenomics data analysis tool
Fourier Ring Correlation and Anisotropic Kernel Density Estimation Improve Deep Learning Based SMLM Reconstruction of Microtubules
Editorial: Single-Molecule Image Analysis
Mutation Edgotype Drives Fitness Effect in Human
Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL)
Artificial intelligence in variant calling: a review
Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV
Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties
Editorial: Recent advances in peptide informatics: challenges and opportunities
Pathway-based analyses of gene expression profiles at low doses of ionizing radiation
stepRNA: Identification of Dicer cleavage signatures and passenger strand lengths in small RNA sequences
Editorial: Computational Methods for Analysis of DNA Methylation Data
Editorial: Artificial intelligence in digital pathology image analysis
Editorial: Insights in integrative bioinformatics-2021
Identification of Biomarker in Brain-specific Gene Regulatory Network Using Structural Controllability Analysis
From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics
Molecular modeling, simulation and docking of Rv1250 protein from Mycobacterium tuberculosis
Mimetic Neural Networks: A Unified Framework for Protein Design and Folding
A brief history of visualizing membrane systems in molecular dynamics simulations
AlignScape, displaying sequence similarity using self-organizing maps
Algorithms to anonymize structured medical and healthcare data: A systematic review
Automated Machine-Learning Framework Integrating Histopathological and Radiological Information for Predicting IDH1 Mutation Status in Glioma
Complementing Hi-C information for 3D chromatin reconstruction by ChromStruct
Centrality Measures in Residue Interaction Networks to Highlight Amino Acids in Protein-Protein Binding
Molecular cartooning with knowledge graphs
Raw Data to Results: A Hands-On Introduction and Overview of Computational Analysis for Single-Molecule Localization Microscopy
Network medicine: facilitating a new view on complex diseases
Insights on poster preparation practices in life sciences
Toward Characterising the Cellular 3D-Proteome
Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs
Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode
Cyclic peptide membrane permeability prediction using deep learning model based on molecular attention transformer
On the choice of negative examples for prediction of host-pathogen protein interactions
AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy
Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2
microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes
Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning
Open-Source Biomedical Image Analysis Models: A Meta-Analysis and Continuous Survey
Transcripts derived from AmnSINE1 repetitive sequences are depleted in the cortex of autism spectrum disorder patients
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis
Identification of novel drug targets and small molecule discovery for MRSA infections
HSDFinder: A BLAST-Based Strategy for Identifying Highly Similar Duplicated Genes in Eukaryotic Genomes
Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy
New alignment method for remote protein sequences by the direct use of pairwise sequence correlations and substitutions
Improved prediction of MHC-peptide binding using protein language models
Towards Chinese text and DNA shift encoding scheme based on biomass plasmid storage
Editorial: Identification of phenotypically important genomic variants
Posterior inference of Hi-C contact frequency through sampling
Can We Convert Genotype Sequences Into Images for Cases/Controls Classification?
BayesAge: A maximum likelihood algorithm to predict epigenetic age
MRSLpred - a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale
Detecting Genetic Variation of Colonizing Streptococcus agalactiae Genomes in Humans: A Precision Protocol
An extended miRNA repertoire in Rattus norvegicus
GMEmbeddings: An R Package to Apply Embedding Techniques to Microbiome Data
Development of a Machine Learning Classifier for Brain Tumors Diagnosis Based on DNA Methylation Profile
An Image Analysis Pipeline for Quantifying the Features of Fluorescently-Labeled Biomolecular Condensates in Cells
Network analysis of driver genes in human cancers
Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images
U-Hack Med Gap Year - A Virtual Undergraduate Internship Program in Computer-Assisted Healthcare and Biomedical Research
Limits of experimental evidence in RNA secondary structure prediction
ChanFAD: A Functional Annotation Database for Ion Channels
Bayesian logical neural networks for human-centered applications in medicine
Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data
Microbiome maps: Hilbert curve visualizations of metagenomic profiles
N-Tools-Browser: Web-Based Visualization of Electrocorticography Data for Epilepsy Surgery
A Tribute to Professor Katharina Gaus
SingleCAnalyzer: Interactive Analysis of Single Cell RNA-Seq Data on the Cloud
Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs
CoeViz 2: Protein Graphs Derived From Amino Acid Covariance
A New Method Based on the von Mises-Fisher Distribution Shows that a Minority of Liver-Localized CD8 T Cells Display Hard-To-Detect Attraction to Plasmodium-Infected Hepatocytes
Predicting liver cancer on epigenomics data using machine learning
Application of annotation-agnostic RNA sequencing data analysis tools for biomarker discovery in liquid biopsy
Advances in antibody discovery from human BCR repertoires
Computational Identification of Functional Centers in Complex Proteins: A Step-by-Step Guide With Examples
Sparse bayesian learning for genomic selection in yeast
Prediction of polyspecificity from antibody sequence data by machine learning
Intracellular and Intercellular Gene Regulatory Network Inference From Time-Course Individual RNA-Seq
Genomic risk prediction of cardiovascular diseases among type 2 diabetes patients in the UK Biobank
Don't Be Fooled by Randomness: Valid p-Values for Single Molecule Microscopy
Translating desktop success to the web in the cytoscape project
Inhibition potential of margolonone and isomargolonone against the dengue virus protease using molecular modeling approaches
ORF1ab codon frequency model predicts host-pathogen relationship in orthocoronavirinae
In silico identification of chilli genome encoded MicroRNAs targeting the 16S rRNA and secA genes of "Candidatus phytoplasma trifolii"
Beyond Microsatellite Instability: Intrinsic Disorder as a Potential Link Between Protein Short Tandem Repeats and Cancer
A hybrid approach for predicting transcription factors
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins
StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes
Human adenovirus DNA polymerase is evolutionarily and functionally associated with human telomerase reverse transcriptase based on in silico molecular characterization that implicate abacavir and zidovudine
LEVERSC: Cross-Platform Scriptable Multichannel 3-D Visualization for Fluorescence Microscopy Images
Integration of multi-omics technologies for crop improvement: Status and prospects
A time-calibrated phylogeny of the diversification of Holoadeninae frogs
An interactive visualization tool for educational outreach in protein contact map overlap analysis
A breast cancer-specific combinational QSAR model development using machine learning and deep learning approaches
Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation
Corrigendum: Spatiotemporal Clustering of Repeated Super-Resolution Localizations via Linear Assignment Problem
Multi-omics of extracellular vesicles: An integrative representation of functional mediators and perspectives on lung disease study
DeepRaccess: high-speed RNA accessibility prediction using deep learning
Protein quality assessment with a loss function designed for high-quality decoys
ursaPGx: a new R package to annotate pharmacogenetic star alleles using phased whole-genome sequencing data
A network-based method for associating genes with autism spectrum disorder
Advanced Data Analysis for Fluorescence-Lifetime Single-Molecule Localization Microscopy
Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers
Real-time open-source FLIM analysis
Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance
Cluster analysis for localisation-based data sets: dos and don'ts when quantifying protein aggregates
Sampling SARS-CoV-2 Proteomes for Predicted CD8 T-Cell Epitopes as a Tool for Understanding Immunogenic Breadth and Rational Vaccine Design
ContactPFP: Protein Function Prediction Using Predicted Contact Information
Artificial intelligence in imaging flow cytometry
A layout framework for genome-wide multiple sequence alignment graphs
An Efficient GUI-Based Clustering Software for Simulation and Bayesian Cluster Analysis of Single-Molecule Localization Microscopy Data
Unlocking the future of complex human diseases prediction: multi-omics risk score breakthrough
Increased Expression of INHBA Is Correlated With Poor Prognosis and High Immune Infiltrating Level in Breast Cancer
Bacteriophage Genetic Edition Using LSTM
A Brave New World: Virtual Reality and Augmented Reality in Systems Biology
BPAGS: a web application for bacteriocin prediction via feature evaluation using alternating decision tree, genetic algorithm, and linear support vector classifier
A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures
Translating theory into practice: assessing the privacy implications of concept-based explanations for biomedical AI
An algorithm for drug discovery based on deep learning with an example of developing a drug for the treatment of lung cancer
Visualizing incompatibilities in phylogenetic trees using consensus outlines
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences
MEMO: Mass Spectrometry-Based Sample Vectorization to Explore Chemodiverse Datasets
The Clinicopathologic and Prognostic Significance of c-Myc Expression in Hepatocellular Carcinoma: A Meta-Analysis
Development and Application of Automatized Routines for Optical Analysis of Synaptic Activity Evoked by Chemical and Electrical Stimulation
MetaComBin: combining abundances and overlaps for binning metagenomics reads
Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models
Challenges of intracellular visualization using virtual and augmented reality
A comprehensive multi-omics analysis reveals unique signatures to predict Alzheimer's disease
Genomic Characterization of Lactobacillus delbrueckii Strains with Probiotics Properties
Human cytokine and coronavirus nucleocapsid protein interactivity using large-scale virtual screens
Releasing the Kraken
From complex data to clear insights: visualizing molecular dynamics trajectories
ShapoGraphy: A User-Friendly Web Application for Creating Bespoke and Intuitive Visualisation of Biomedical Data
Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis
SciJava Ops: an improved algorithms framework for Fiji and beyond
A novel lossless encoding algorithm for data compression-genomics data as an exemplar
Climatic factors, but not geographic distance, promote genetic structure and differentiation of Cleistogenes squarrosa (Trin.) Keng populations
Primer on machine learning applications in brain immunology
The thorny complexities of visualization research for clinical settings: A case study from genomics
3D multiplexed tissue imaging reconstruction and optimized region of interest (ROI) selection through deep learning model of channels embedding
Completing a molecular timetree of primates
Editorial: Expert opinions in integrative bioinformatics: 2022
A brief survey of tools for genomic regions enrichment analysis
Deep learning model for automatic segmentation of lungs and pulmonary metastasis in small animal MR images
Biomarker-driven drug repurposing for NAFLD-associated hepatocellular carcinoma using machine learning integrated ensemble feature selection
Making bioinformatics training FAIR: the EMBL-EBI training portal
BERT-Kgly: A Bidirectional Encoder Representations From Transformers (BERT)-Based Model for Predicting Lysine Glycation Site for Homo sapiens
A review on deep learning applications in highly multiplexed tissue imaging data analysis
Adjustments to the reference dataset design improve cell type label transfer
AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters
Discovery of plasma biomarkers related to blood-brain barrier dysregulation in Alzheimer's disease
Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts
Strategies for the Production of Molecular Animations
DCMA: faster protein backbone dihedral angle prediction using a dilated convolutional attention-based neural network
Multimodal AI for prediction of distant metastasis in carcinoma patients
MethylMasteR: A Comparison and Customization of Methylation-Based Copy Number Variation Calling Software in Cancers Harboring Large Scale Chromosomal Deletions
InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network
Functional networks of the human bromodomain-containing proteins