yusuke1997/dblp-id-title huggingface dataset:
ivprobit: An R package to estimate the instrumental variables probit model
xeofs: Comprehensive EOF analysis in Python with xarray
DVMDOSTEM v0.8.3: a terrestrial ecosystem model designed to represent arctic, boreal and permafrost ecosystem dynamics
academictwitteR: an R package to access the Twitter Academic Research Product Track v2 API endpoint
Nashpy: A Python library for the computation of Nash equilibria
regional-mom6: A Python package for automatic generation of regional configurations for the Modular Ocean Model 6
TurboFlow: Meanline Modelling of Axial Turbines
An easy-to-use p5.js 3D object picker for visual artists
textnets: A Python package for text analysis with networks
Philentropy: Information Theory and Distance Quantification with R
Bempp-cl: A fast Python based just-in-time compiling boundary element library
micompm: A MATLAB/Octave toolbox for multivariate independent comparison of observations
JPhyloRef: a tool for testing and resolving phyloreferences
profileR: An R package for profile analysis
JOAN: a framework for human-automated vehicle interaction experiments in a virtual reality driving simulator
IDTxl: The Information Dynamics Toolkit xl: a Python package for the efficient analysis of multivariate information dynamics in networks
AgentPy: A package for agent-based modeling in Python
ReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG
PyMedPhys: A community effort to develop an open, Python-based standard library for medical physics applications
SpeedyWeather.jl: Reinventing atmospheric general circulation models towards interactivity and extensibility
NeuroDiffEq: A Python package for solving differential equations with neural networks
FHI-vibes: _Ab Initio_ Vibrational Simulations
UnfoldMakie.jl: EEG/ERP visualization package
Autorank: A Python package for automated ranking of classifiers
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis
portalr: an R package for summarizing and using the Portal Project Data
ProbNumDiffEq.jl: Probabilistic Numerical Solvers for Ordinary Differential Equations in Julia
Volume Segmantics: A Python Package for Semantic Segmentation of Volumetric Data Using Pre-trained PyTorch Deep LearningModels
citesdb: An R package to support analysis of CITES Trade Database shipment-level data
dcgp: Differentiable Cartesian Genetic Programming made easy
NAIF PDS4 Bundler: A Python package to generate SPICE PDS4 archives
cffr: Generate Citation File Format Metadata for R Packages
The Geodynamic World Builder: A planetary structure creator for the geosciences
FiLiP: A python software development kit (SDK) for accelerating the development of services based on FIWARE IoT platform
SmartEDA: An R Package for Automated Exploratory Data Analysis
pyMARS: automatically reducing chemical kinetic models in Python
matador: a Python library for analysing, curating and performing high-throughput density-functional theory calculations
STITCHES: a Python package to amalgamate existing Earth system model output into new scenario realizations
Sapsan: Framework for Supernovae Turbulence Modeling with Machine Learning
MOAFS: A Massive Online Analysis library for feature selection in data streams
graphenv: a Python library for reinforcement learning on graph search spaces
Containershare: Open Source Registry to build, test, deploy with CircleCI
Magicwand: A platform to provide high-quality, reliable, and reproducible data sets for low-and-slow DDoS attacks
Kirstine.jl: A Julia Package for Bayesian Optimal Design of Experiments
statConfR: An R Package for Static Models of Decision Confidence and Metacognition
deepCR: Cosmic Ray Rejection with Deep Learning
xtal2png: A Python package for representing crystal structure as PNG files
fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI
localcovid19now: processing and mapping COVID-19 case data at subnational scales
LMDiskANN.jl: An Implementation of the Low Memory Disk Approximate Nearest Neighbors Search Algorithm
PyUnfold: A Python package for iterative unfolding
splithalf: robust estimates of split half reliability
popeye: a population receptive field estimation tool
PyHeatDemand - Processing Tool for Heat Demand Data
cartoee: Publication quality maps using Earth Engine
DeepSynth: Scaling Neural Program Synthesis with Distribution-based Search
singcar: Comparing single cases to small samples in R
DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections
dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform
FRAGMENT-MNP: A model of micro- and nanoplastic fragmentation in the environment
RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics
epipack: An infectious disease modeling package for Python
batchtools: Tools for R to work on batch systems
mimosa: A Modern Graphical User Interface for 2-level Mixed Models
shar: An R package to analyze species-habitat associations using point pattern analysis
OpenMD: A parallel molecular dynamics engine for complex systems and interfaces
Aurora: An open-source Python implementation of the EMTF package for magnetotelluric data processing using MTH5 and mt_metadata
Taxonomy Resolver: A Python package for building and filtering taxonomy trees
udpPacketManager: An International LOFAR Station Data (Pre-)Processor
Synthia: multidimensional synthetic data generation in Python
fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses
Evoke: A Python package for evolutionary signalling games
GGLasso - a Python package for General Graphical Lasso computation
mxnorm: An R Package to Normalize Multiplexed Imaging Data
Gridap: An extensible Finite Element toolbox in Julia
HinetPy: A Python package for accessing and processing NIED Hi-net seismic data
TimeSeriesClustering: An extensible framework in Julia
gofcat: An R package for goodness-of-fit of categorical response models
AMLTK: A Modular AutoML Toolkit in Python
TE-dependent analysis of multi-echo fMRI with tedana
UBayFS: An R Package for User Guided Feature Selection
Reference Point Calculator (RPC): A Shiny app for exploration of limit reference points for fisheries management
PostcodesioR: An R package for UK geocoding
Vlasiator.jl: A Julia package for processing Vlasiator data
Caffeine: A parallel runtime library for supporting modern Fortran compilers
Py-school-match: Matching algorithms to assign students to schools
eyecite: A tool for parsing legal citations
Asimov: A framework for coordinating parameter estimation workflows
swyft: Truncated Marginal Neural Ratio Estimation in Python
ALNS: a Python implementation of the adaptive large neighbourhood search metaheuristic
The psycho Package: an Efficient and Publishing-Oriented Workflow for Psychological Science
UKCensusAPI: python and R interfaces to the nomisweb UK census data API
mixR: An R package for Finite Mixture Modeling for Both Raw and Binned Data
Museo ToolBox: A Python library for remote sensing including a new way to handle rasters
ChebTools: C++11 (and Python) tools for working with Chebyshev expansions
MACE: a Machine-learning Approach to Chemistry Emulation
Quasi-Monte Carlo Methods in Python
cortecs: A Python package for compressing opacities
Vivid Volcano: Empowering Non-Bioinformaticians to Analyze Pre-Processed Omics Data
shmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python
PyPVRPM: Photovoltaic Reliability and Performance Model in Python
ZOSPy: optical ray tracing in Python through OpticStudio
The vtreat R package: a statistically sound data processor for predictive modeling
Bramble: adaptive common neighbor analysis (CNA) for the recognition of surface topologies in nanoparticles
libCEED: Fast algebra for high-order element-based discretizations
cd2es: Converting climate data to energy system input data
FDApy: a Python package for functional data
Moead-framework: a modular MOEA/D Python framework
thresholdmodeling: A Python package for modeling excesses over a threshold using the Peak-Over-Threshold Method and the Generalized Pareto Distribution
Mango.jl: A Julia-Based Multi-Agent Simulation Framework
Metaheuristics: A Julia Package for Single- and Multi-Objective Optimization
LAS: an integrated language analysis tool for multiple languages
elsa: an elegant framework for tomographic reconstruction
doped: Python toolkit for robust and repeatable charged defect supercell calculations
BayesO: A Bayesian optimization framework in Python
CutePeaks: A modern viewer for Sanger trace file
scanstatistics: space-time anomaly detection using scan statistics
LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases
DICaugment: A Python Package for 3D Medical Imaging Augmentation
r3f: Rotation of 3-dimensional Reference Frames
ThermoCodegen: a python/C++ package for the generation of custom thermodynamic models
Off-resonance CorrecTion OPen soUrce Software (OCTOPUS)
Minerva: a light-weight, narrative image browser for multiplexed tissue images
open_iA: A tool for processing and visual analysis of industrial computed tomography datasets
Capytaine: a Python-based linear potential flow solver
TraViA: a Traffic data Visualization and Annotation tool in Python
GSODR: Global Summary Daily Weather Data in R
EvoMaster: A Search-Based System Test Generation Tool
Critical care data processing tools
gmr: Gaussian Mixture Regression
ggret: An R package for visualising and manipulating tree‑based phylogenetic networks
visdat: Visualising Whole Data Frames
stacomiR : a common tool for monitoring fish migration
ASTE: An artificial solver testing environment for partitioned coupling with preCICE
pyuvsim: A comprehensive simulation package for radio interferometers in python
PyMSM: Python package for Competing Risks and Multi-State models for Survival Data
Nimbus: a Ruby gem to implement Random Forest algorithms in a genomic selection context
MatrixFuns.jl: Matrix functions in Julia
eLabFTW: An open source laboratory notebook for research labs
idf-analysis: Heavy rainfall intensity as a function of duration and return period
HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge
Learning from Crowds with Crowd-Kit
RHEIA: Robust design optimization of renewable Hydrogen and dErIved energy cArrier systems
VCC: A framework for building containerized reproducible cluster software environments
hei: Calculate Healthy Eating Index (HEI) Scores
Reasons: A digital argument mapping library for modern browsers
Inscriptis - A Python-based HTML to text conversion library optimized for knowledge extraction from the Web
LabelProp: A semi-automatic segmentation tool for 3D medical images
Mesa 3: Agent-based modeling with Python in 2025
Confidence Intervals for Random Forests in Python
pyodesys: Straightforward numerical integration of ODE systems from Python
khmer release v2.1: software for biological sequence analysis
The stantargets R package: a workflow framework for efficient reproducible Stan-powered Bayesian data analysis pipelines
nap: A molecular dynamics package with parameter-optimization programs for classical and machine-learning potentials
surtvep: An R package for estimating time-varying effects
cppdlr: Imaginary time calculations using the discrete Lehmann representation
cartography: Create and Integrate Maps in your R Workflow
A C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulators
CircuitGraph: A Python package for Boolean circuits
filltex: Automatic queries to ADS and INSPIRE databases to fill LaTex bibliography
Thing Directory: Simple and lightweight registry of IoT device metadata
Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development
omock: A R package for Mock Data Generation for the Observational Medical Outcomes Partnership Common Data Model
Tethys: A Spatiotemporal Downscaling Model for Global Water Demand
ivadomed: A Medical Imaging Deep Learning Toolbox
MicroFloatingPoints.jl: providing very small IEEE 754-compliant floating-point types
pypillometry: A Python package for pupillometric analyses
Empirical: A scientific software library for research, education, and public engagement
AHGestimation: An R package for computing robust, mass preserving hydraulic geometries and rating curves
Embeddings.jl: easy access to pretrained word embeddings from Julia
LBR-Stack: ROS 2 and Python Integration of KUKA FRI for Med and IIWA Robots
pentapy: A Python toolbox for pentadiagonal linear systems
Hypredrive: High-level interface for solving linear systems with hypre
Sentiment Analysis of Twitter Data (saotd)
lpjmlkit: A toolkit for operating LPJmL and model-specific data processing
JMcDM: A Julia package for multiple-criteria decision-making tools
SBIAX: Density-estimation simulation-based inference in JAX
Virgo: A Versatile Spectrometer for Radio Astronomy
Pose2Sim: An open-source Python package for multiview markerless kinematics
Abmarl: Connecting Agent-Based Simulations with Multi-Agent Reinforcement Learning
_tfaip_ - a Generic and Powerful Research Framework for Deep Learning based on Tensorflow
pide: Petrophysical Interpretation tools for geoDynamic Exploration
DetectorChecker: analyzing patterns of defects in detector screens
The MFrontGallery project
TREvoSim v3: An individual based simulation for generating trees and character data
NeuroAnalyzer: Julia toolbox for analyzing neurophysiological data
scikit-hubness: Hubness Reduction and Approximate Neighbor Search
KLRfome - Kernel Logistic Regression on Focal Mean Embeddings
MiTfAT: A Python-based Analysis Tool for Molecular fMRI Experiments
minorbsem: An R package for structural equation models that account for the influence of minor factors
grapherator: A Modular Multi-Step Graph Generator
eigentools: A Python package for studying differential eigenvalue problems with an emphasis on robustness
Mashpit: sketching out genomic epidemiology
ResumableFunctions: C# sharp style generators for Julia
sourmash: a library for MinHash sketching of DNA
piecewise-regression (aka segmented regression) in Python
pysersic: A Python package for determining galaxy structural properties via Bayesian inference, accelerated with jax
abcvoting: A Python package for approval-based multi-winner voting rules
CART: A Tool for Making Paper Relevancy Screening Easier
Symfem: a symbolic finite element definition library
Satisfiability.jl: Satisfiability Modulo Theories in Julia
Snek5000: a new Python framework for Nek5000
eixport: An R package to export emissions to atmospheric models
Giga Connectome: a BIDS-app for time series and functional connectome extraction
ggalluvial: Layered Grammar for Alluvial Plots
SCONE: Open Source Software for Predictive Simulation of Biological Motion
caracas: Computer algebra in R
The MFrontGenericInterfaceSupport project
treex: a Python package for manipulating rooted trees
GKNAP: A Java and C++ package for solving the multidimensional knapsack problem
geneXplainR: An R interface for the geneXplain platform
graphsim: An R package for simulating gene expression data from graph structures of biological pathways
c-lasso - a Python package for constrained sparse and robust regression and classification
TensorFlow.jl: An Idiomatic Julia Front End for TensorFlow
hammurabi X: a C++ package for simulating Galactic emissions
Gravity: Estimation Methods for Gravity Models in R
geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events
CSaransh : Software Suite to Study Molecular Dynamics Simulations of Collision Cascades
pref_voting: The Preferential Voting Tools package for Python
shinyssdtools: A web application for fitting Species Sensitivity Distributions (SSDs)
pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology
audiomate: A Python package for working with audio datasets
ExaDEM: a HPC application based on exaNBody targeting scalable DEM simulations with complex particle shapes
pactus: A Python framework for trajectory classification
Ambit - A FEniCS-based cardiovascular multi-physics solver
CADET-Core 5.0: High-Performance Solver for Advanced Biotechnology Process Modeling
MLMOD: Machine Learning Methods for Data-Driven Modeling in LAMMPS
SeqPeelSort: a spike sorting algorithm for single sensillum recordings
elwaspatid: A Python package to compute space-time diagrams for the propagation of elastic waves in 1D rods
fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data
EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools
BibDedupe: An Open-Source Python Library for Bibliographic Record Deduplication
Automated Sleep Stage Scoring Using k-Nearest Neighbors Classifier
SubsetTools: A Python package to subset data to build and run ParFlow hydrologic models
WrightTools: a Python package for multidimensional spectroscopy
bayes-toolbox: A Python package for Bayesian statistics
The country converter coco - a Python package for converting country names between different classification schemes
Chromatiblock: scalable whole-genome visualization of structural differences in prokaryotes
lightcurver: A Python Pipeline for Precise Photometry of Multiple-Epoch Wide-Field Images
MassMine: Your Access To Data
Cadabra2: computer algebra for field theory revisited
MimiBRICK.jl: A Julia package for the BRICK model for sea-level change in the Mimi integrated modeling framework
scikit-fem: A Python package for finite element assembly
smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX
uJVM: Lightweight Java Virtual Machine for embedded systems
ConTEXT Explorer: a web-based text analysis tool for exploring and visualizing concepts across time
WGS2NCBI - Toolkit for preparing genomes for submission to NCBI
aesop: ARC Echelle Spectroscopic Observation Pipeline
RAMP: stochastic simulation of user-driven energy demand time series
naturf: a package for generating urban parameters for numerical weather modeling
scmorph: a Python package for analysing single-cell morphological profiles
hdme: High-Dimensional Regression with Measurement Error
PETRARCH2: Another Event Coding Program
bbsAssistant: An R package for downloading and handling data and information from the North American Breeding Bird Survey
A flexible search system for high-accuracy identification of biological entities and molecules
MCycle: A Python package for 1D sizing and analysis of thermodynamic power cycles
SurPyval: Survival Analysis with Python
Singularity Registry: Open Source Registry for Singularity Images
Ocellaris: a DG FEM solver for free-surface flows
bíogo/hts: high throughput sequence handling for the Go language
Coral: a parallel spectral solver for fluid dynamics and partial differential equations
Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data
Shiny tools for management rules: interactive applications that aid in conservation strategies for North Atlantic right whales
MiSTree: a Python package for constructing and analysing Minimum Spanning Trees
gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models
FIPS: An R Package for Biomathematical Modelling of Human Fatigue Related Impairment
CR-Sparse: Hardware accelerated functional algorithms for sparse signal processing in Python using JAX
Diart: A Python Library for Real-Time Speaker Diarization
stemflow: A Python Package for Adaptive Spatio-Temporal Exploratory Model
skedm: Empirical Dynamic Modeling
phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects
Thermosteam: BioSTEAM's Premier Thermodynamic Engine
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping
The Dusty Evolved Star Kit (DESK): A Python package for fitting the Spectral Energy Distribution of Evolved Stars
rGUIDANCE - alignment confidence score computation in R
WEdiff: A Python and C++ package for automatic differentiation
lbh15: a Python package for standard use and implementation of physical data of heavy liquid metals used in nuclear reactors
IKPLS: Improved Kernel Partial Least Squares and Fast Cross-Validation Algorithms for Python with CPU and GPU Implementations Using NumPy and JAX
NLSIG-COVID19Lab: A modern logistic-growth tool (nlogistic-sigmoid) for descriptively modelling the dynamics of the COVID-19 pandemic process
LCIA Formatter
coder: An R package for code-based item classification and categorization
pyEQL: A Python interface for water chemistry
SGMCMCJax: a lightweight JAX library for stochastic gradient Markov chain Monte Carlo algorithms
PhaseTypeR: an R package for phase-type distributions in population genetics
Radial Interstices Enable Speedy Low-volume Imaging
FastVPINNs: An efficient tensor-based Python library for solving partial differential equations using hp-Variational Physics Informed Neural Networks
Science Capsule - Capturing the Data Life Cycle
CusToM: a Matlab toolbox for musculoskeletal simulation
CMakePPLang: An object-oriented extension to CMake
Geodata-Harvester: A Python package to jumpstart geospatial data extraction and analysis
fractopo: A Python package for fracture network analysis
WhaleMap: a tool to collate and display whale survey results in near real-time
dms-viz: Structure-informed visualizations for deep mutational scanning and other mutation-based datasets
Neurosift: DANDI exploration and NWB visualization in the browser
NEMESISPY: A Python package for simulating and retrieving exoplanetary spectra
omni-fig: Unleashing Project Configuration and Organization in Python
TDEP: Temperature Dependent Effective Potentials
sandpyper: A Python package for UAV-SfM beach volumetric and behavioural analysis
Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning
PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization
nsink: An R package for flow path nitrogen removal estimation
volesti: A C++ library for sampling and volume computation on convex bodies
pymatgen-analysis-defects: A Python package for analyzing point defects in crystalline materials
ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code
Rule-based integration: An extensive system of symbolic integration rules
madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes
SDA: a symbolic differential algebra package in C++
PYroMat: A Python package for thermodynamic properties
mamonca: magnetic Monte Carlo code
PDF Entity Annotation Tool (PEAT)
'WODEN': A CUDA-enabled package to simulate low-frequency radio interferometric data
Arabica: A Python package for exploratory analysis of text data
SynxFlow: A GPU-accelerated Python package for multi-hazard simulations
PhaseFieldX: An Open-Source Framework for Advanced Phase-Field Simulations
rfasst: An R tool to estimate air pollution impacts on health and agriculture
NERD: Numerical Estimation of Rodenticide Density
Metrics As Scores: A Tool- and Analysis Suite and Interactive Application for Exploring Context-Dependent Distributions
W2W: A Python package that injects WUDAPT's Local Climate Zone information in WRF
CarrierCapture.jl: Anharmonic Carrier Capture
Lcopt - An interactive tool for creating fully parameterised Life Cycle Assessment (LCA) foreground models
SPM 25: open source neuroimaging analysis software
BiRank: Fast and Flexible Ranking on Bipartite Networks with R and Python
Moran Pycess: a Python package to simulate Moran processes driven by game theory
FEST-3D: Finite-volume Explicit STructured 3-Dimensional solver
pypfilt: a particle filter for Python
Matching: A Python library for solving matching games
DTW-C++: Fast dynamic time warping and clustering of time series data
Efficient Polyhedral Gravity Modeling in Modern C++ and Python
FASMA 2.0: A Python package for stellar parameters and chemical abundances
Fast k-medoids Clustering in Rust and Python
VoteKit: A Python package for computational social choice research