yusuke1997/dblp-id-title huggingface dataset:
Internet of things in medicine: A systematic mapping study
Towards an on-demand peer feedback system for a clinical knowledge base: A case study with order sets
Automated comparative auditing of NCIT genomic roles using NCBI
An extended protocol for usability validation of medical devices: Research design and reference model
Predicting changes in systolic blood pressure using longitudinal patient records
Methods for automated concept mapping between medical databases
Trends and opportunities in computable clinical phenotyping: A scoping review
Towards unstructured mortality prediction with free-text clinical notes
Deep self-reconstruction driven joint nonnegative matrix factorization model for identifying multiple genomic imaging associations in complex diseases
BiFDR: Brain-Inspired Federated Diffusion Transformer with Reinforcement for privacy-preserving molecular generation
Supporting biomedical ontology evolution by identifying outdated concepts and the required type of change
Compass: A hybrid method for clinical and biobank data mining
Graph-based biomedical text summarization: An itemset mining and sentence clustering approach
SKM-SNP: SNP markers detection method
3D interactive surgical visualization system using mobile spatial information acquisition and autostereoscopic display
Representation in stochastic search for phylogenetic tree reconstruction
PREDOSE: A semantic web platform for drug abuse epidemiology using social media
Trie-based rule processing for clinical NLP: A use-case study of n-trie , making the ConText algorithm more efficient and scalable
Advancing cancer driver gene identification through an integrative network and pathway approach
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study
A case study of the Secure Anonymous Information Linkage (SAIL) Gateway: A privacy-protecting remote access system for health-related research and evaluation
Unsupervised probabilistic models for sequential Electronic Health Records
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework
Definition and validation of SNOMED CT subsets using the expression constraint language
A genetic algorithm-support vector machine method with parameter optimization for selecting the tag SNPs
Federated queries of clinical data repositories: Scaling to a national network
Extraction of temporal relations from clinical free text: A systematic review of current approaches
Reducing false alarm rates for critical arrhythmias using the arterial blood pressure waveform
SECNLP: A survey of embeddings in clinical natural language processing
An integrated, ontology-driven approach to constructing observational databases for research
A review on knowledge graphs for healthcare: Resources, applications, and promises
Methods for studying medical device technology and practitioner cognition: The case of user-interface issues with infusion pumps
Cancer adjuvant chemotherapy strategic classification by artificial neural network with gene expression data: An example for non-small cell lung cancer
Infobuttons and classification models: A method for the automatic selection of on-line information resources to fulfill clinicians' information needs
Similarity-based health risk prediction using Domain Fusion and electronic health records data
Semantic processing of EHR data for clinical research
Automatically finding relevant citations for clinical guideline development
A novel neural-inspired learning algorithm with application to clinical risk prediction
SPBERE: Boosting span-based pipeline biomedical entity and relation extraction via entity information
A computational framework for converting textual clinical diagnostic criteria into the quality data model
Delivering clinical decision support services: There is nothing as practical as a good theory
A Syntax-enhanced model based on category keywords for biomedical relation extraction
Vector representations of multi-word terms for semantic relatedness
Development and validation of a continuously age-adjusted measure of patient condition for hospitalized children using the electronic medical record
Automatic perceptual color map generation for realistic volume visualization
Integrated rapid-cycle comparative effectiveness trials using flexible point of care randomisation in electronic health record systems
Incremental Gaussian Discriminant Analysis based on Graybill and Deal weighted combination of estimators for brain tumour diagnosis
Corrigendum to "Justifying diagnosis decisions by deep neural networks" [J. Biomed. Inf. 96 (2019) 103248]
Medication event extraction in clinical notes: Contribution of the WisPerMed team to the n2c2 2022 challenge
Granularity, scale and collectivity: When size does and does not matter
Improving Chinese electronic medical record retrieval by field weight assignment, negation detection, and re-ranking
Acquisition and evaluation of verb subcategorization resources for biomedicine
Trustworthy assertion classification through prompting
Construct validity of six sentiment analysis methods in the text of encounter notes of patients with critical illness
Holistic approach to design and implementation of a medical teleconsultation workspace
A robust and simple security extension for the medical standard SCP-ECG
Abstraction and analysis of clinical guidance trees
Clinical comparison between trial participants and potentially eligible patients using electronic health record data: A generalizability assessment method
Handbook of Biosurveillance, M.M. Wagner, A.W. Moore, R.M. Aryel (Eds.). Elsevier Inc. ISBN-13: 978-0-12-369378-5
Managing proposals and evaluations of updates to medical knowledge: Theory and applications
scLINE: A multi-network integration framework based on network embedding for representation of single-cell RNA-seq data
Applying information and communications technologies to collect health data from remote settings: A systematic assessment of current technologies
Discovering discovery patterns with predication-based Semantic Indexing
Adaptive-AutoMO: A domain adaptive automated multiobjective neural network for reliable lesion malignancy prediction via digital breast tomosynthesis
Human-centered computing in health information systems Part 1: Analysis and design
COnVIDa: COVID-19 multidisciplinary data collection and dashboard
Where we stand, where we are moving: Surveying computational techniques for identifying miRNA genes and uncovering their regulatory role
Integrating electronic health record information to support integrated care: Practical application of ontologies to improve the accuracy of diabetes disease registers
Deep neural networks for neuro-oncology: Towards patient individualized design of chemo-radiation therapy for Glioblastoma patients
Showing Your Work: Impact of annotating electronic prescriptions with decision support results
Evidence-based careflow management systems: the case of post-stroke rehabilitation
Concept embedding to measure semantic relatedness for biomedical information ontologies
Cross-scale semantic fusion integration of dual pathway models in drug repositioning
A multi-technique approach to bridge electronic case report form design and data standard adoption
A new approach to medical diagnostic decision support
Shape Expressions (ShEx) schemas for the FHIR R5 specification
Creating synthetic patient data to support the design and evaluation of novel health information technology
How can machine-learning methods assist in virtual screening for hyperuricemia? A healthcare machine-learning approach
A machine learning perspective on the development of clinical decision support systems utilizing mass spectra of blood samples
Using natural language processing to extract mammographic findings
Semantic concept-enriched dependence model for medical information retrieval
Value of the electronic patient record: An analysis of the literature
SynthMedic: Utilizing large language models for synthetic discharge summary generation, correction and validation
Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network
Toward automated consumer question answering: Automatically separating consumer questions from professional questions in the healthcare domain
Rapamycin-mTOR+BRAF=? Using relational similarity to find therapeutically relevant drug-gene relationships in unstructured text
A partnership approach for Electronic Data Capture in small-scale clinical trials
Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology
Individualizing generic decision models using assessments as evidence
Federated Bayesian network learning from multi-site data
iODA: An integrated tool for analysis of cancer pathway consistency from heterogeneous multi-omics data
On mining latent topics from healthcare chat logs
Evaluation in Life Cycle of Information Technology (ELICIT) framework: Supporting the innovation life cycle from business case assessment to summative evaluation
Resource efficient data compression algorithms for demanding, WSN based biomedical applications
Greater patient health information control to improve the sustainability of health information exchanges
Preparing an annotated gold standard corpus to share with extramural investigators for de-identification research
Using LOINC to link 10 terminology standards to one unified standard in a specialized domain
Health dialog systems for patients and consumers
Multi-channel fusion LSTM for medical event prediction using EHRs
Identifying projected clusters from gene expression profiles
Categorizing the world of registries
A novel machine learning-based workflow to capture intra-patient heterogeneity through transcriptional multi-label characterization and clinically relevant classification
Event prediction by estimating continuously the completion of a single temporal pattern's instances
Reducing waiting time for remote patients in telemedicine with considering treated patients in emergency department based on body sensors technologies and hybrid computational algorithms: Toward scalable and efficient real time healthcare monitoring system
Analysis of functional and pathway association of differential co-expressed genes: A case study in drug addiction
Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types
Weakly Semi-supervised phenotyping using Electronic Health records
Biomedical named entity recognition using BERT in the machine reading comprehension framework
A semi-automated approach for analyzing collages to inform the design of a family health information management system for Hispanic dementia caregivers
Stacked ensemble combined with fuzzy matching for biomedical named entity recognition of diseases
Automatic phenotyping of electronical health record: PheVis algorithm
Evaluating automated entity extraction with respect to drug and non-drug treatment strategies
Automatic Lumbar Vertebral Identification Using Surface-Based Registration
Comparative study of machine learning methods for COVID-19 transmission forecasting
A prototype symbolic model of canonical functional neuroanatomy of the motor system
High-Performance Implementation and Analysis of the Linkmap Program
Patient deep spatio-temporal encoding and medication substructure mapping for safe medication recommendation
Intelligent mobile support for therapy adherence and behavior change
Membership inference attacks against synthetic health data
Automatic generation of investigator bibliographies for institutional research networking systems
Wearable activity trackers, accuracy, adoption, acceptance and health impact: A systematic literature review
Mapping of critical events in disease progression through binary classification: Application to amyotrophic lateral sclerosis
Emerging medical informatics with case-based reasoning for aiding clinical decision in multi-agent system
ADPG: Biomedical entity recognition based on Automatic Dependency Parsing Graph
Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy
Development and evaluation of nursing user interface screens using multiple methods
Modelling diversity in hospital strategies in city-scale ambulance dispatching with coupled game-theoretic model and discrete-event simulation
Patient representation learning and interpretable evaluation using clinical notes
Using large clinical corpora for query expansion in text-based cohort identification
A method for structuring complex clinical knowledge and its representational formalisms to support composite knowledge interoperability in healthcare
Deep learning for rare disease: A scoping review
Hyperbolic hierarchical knowledge graph embeddings for biological entities
Beyond Fine-Tuning: Leveraging Domain-Aware In-Context learning with large language models for clinical named entity recognition
Automated generation of decision-tree models for the economic assessment of interventions for rare diseases using the RaDiOS ontology
RoBIn: A Transformer-based model for risk of bias inference with machine reading comprehension
A corpus-driven standardization framework for encoding clinical problems with HL7 FHIR
Efficient adversarial debiasing with concept activation vector - Medical image case-studies
@Note: A workbench for Biomedical Text Mining
Automating medical simulations
Effects of data and entity ablation on multitask learning models for biomedical entity recognition
Machine learning and bioinformatics models to identify gene expression patterns of ovarian cancer associated with disease progression and mortality
Using personas to tailor educational messages to the preferences of coronary heart disease patients
Co-occurrence of medical conditions: Exposing patterns through probabilistic topic modeling of snomed codes
Exploring the potential impact of multi-factor precision interventions in Alzheimer's disease with system dynamics
A comprehensive performance evaluation, comparison, and integration of computational methods for detecting and estimating cross-contamination of human samples in cancer next-generation sequencing analysis
Lexically suggest, logically define: Quality assurance of the use of qualifiers and expected results of post-coordination in SNOMED CT
Estimated financial savings associated with health information exchange and ambulatory care referral
TMA-TAB: A spreadsheet-based document for exchange of tissue microarray data based on the tissue microarray-object model
Efficient layered density-based clustering of categorical data
Automated grouping of medical codes via multiview banded spectral clustering
Predict effective drug combination by deep belief network and ontology fingerprints
Accounting for population structure in deep learning models for genomic analysis
Identification of the Occluded Artery in Patients with Myocardial Ischemia Induced by Prolonged Percutaneous Transluminal Coronary Angioplasty Using Traditional vs Transformed ECG-Based Indexes
A hybrid knowledge-based and data-driven approach to identifying semantically similar concepts
An Evaluation of Extended vs. Weighted Least Squares for Parameter Estimation in Physiological Modeling
BOAT: Automatic alignment of biomedical ontologies using term informativeness and candidate selection
Wavelet Domain Nonlinear Filtering for Evoked Potential Signal Enhancement
Comparison of character-level and part of speech features for name recognition in biomedical texts
On the Human Left Ventricular Shape
Deep learning uncertainty quantification for clinical text classification
Statistical outbreak detection by joining medical records and pathogen similarity
A self-supervised language model selection strategy for biomedical question answering
State of the art and open challenges in community-driven knowledge curation
The Polysomnogram Assay: A Method to Represent the Overnight Polysomnogram in a Condensed Format
The transformation of a gold standard in-person substance use assessment to a web-based, REDCap integrated data capture tool
Deep learning on time series laboratory test results from electronic health records for early detection of pancreatic cancer
Exploring the effect of virtual reality relaxation environment on white coat hypertension in blood pressure measurement
Enhancing identification performance of cognitive impairment high-risk based on a semi-supervised learning method
Semantator: Semantic annotator for converting biomedical text to linked data
Graph fusion prediction of autism based on attentional mechanisms
Assigning roles to protein mentions: The case of transcription factors
Integration of statistical inference methods and a novel control measure to improve sensitivity and specificity of data analysis in expression profiling studies
Ethics and subsequent use of electronic health record data
The linked medical data access control framework
Auditing complex concepts of SNOMED using a refined hierarchical abstraction network
MACE prediction of acute coronary syndrome via boosted resampling classification using electronic medical records
Development and evaluation of a terminology-based electronic nursing record system
Query-oriented evidence extraction to support evidence-based medicine practice
Disentangling the phenotypic patterns of hypertension and chronic hypotension
Building nursing knowledge through informatics: from concept representation to data mining
Continuing challenges swirl around bioinformatics service delivery
A cohort of patients in New York State with an alcohol use disorder and subsequent treatment information - A merging of two administrative data sources
Biomedical ontologies: What part-of is and isn't
They May Not Work! An evaluation of eleven sentiment analysis tools on seven social media datasets
Making science computable: Developing code systems for statistics, study design, and risk of bias
Interval based fuzzy systems for identification of important genes from microarray gene expression data: Application to carcinogenic development
Strategies for handling missing clinical data for automated surgical site infection detection from the electronic health record
Enabling older adults to carry out paperless falls-risk self-assessments using guidetomeasure-3D: A mixed methods study
Dynamic configuration scheduling problem for stochastic medical resources
Digital Subtraction Angiogram Registration Method with Local Distortion Vectors to Decrease Motion Artifact
Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction
Using name-internal and contextual features to classify biological terms
Clinical outcome-guided deep temporal clustering for disease progression subtyping
Privacy preserving processing of genomic data: A survey
Strategies for detecting and mitigating dataset shift in machine learning for health predictions: A systematic review
Genomic considerations for FHIR®; eMERGE implementation lessons
Domain specific word embeddings for natural language processing in radiology
Development, implementation and evaluation of an information model for archetype based user responsive medical data visualization
Methodological framework for evaluating clinical processes: A cognitive informatics perspective
Mining association language patterns using a distributional semantic model for negative life event classification
Perplexity and proximity: Large language model perplexity complements semantic distance metrics for the detection of incoherent speech
Coding Neuroradiology Reports for the Northern Manhattan Stroke Study: A Comparison of Natural Language Processing and Manual Review
Deep phenotyping: Embracing complexity and temporality - Towards scalability, portability, and interoperability
Learning from heterogeneous temporal data in electronic health records
Multiple ontologies in action: Composite annotations for biosimulation models
Image Understanding Methods in Biomedical Informatics and Digital Imaging
The need for multimodal health data modeling: A practical approach for a federated-learning healthcare platform
An enhanced CRFs-based system for information extraction from radiology reports
Hiding in plain sight: What Koppel et al. tell us about healthcare IT
Comparing and consolidating two heuristic metaschemas
Maximizing the use of social and behavioural information from secondary care mental health electronic health records
Towards linking patients and clinical information: detecting UMLS concepts in e-mail
Using usability heuristics to evaluate patient safety of medical devices
Unsupervised mining of frequent tags for clinical eligibility text indexing
EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning
A method for measuring the effect of certified electronic health record technology on childhood immunization status scores among Medicaid managed care network providers
Sensitivity analysis of gene ranking methods in phenotype prediction
A Query Integrator and Manager for the Query Web
Automated generation of directed graphs from vascular segmentations
Multi-view based heterogeneous graph contrastive learning for drug-target interaction prediction
Classification models for the prediction of clinicians' information needs
Anatomy of data integration
A joint learning framework for analyzing data from national geriatric centralized networks: A new toolbox deciphering real-world complexity
Persuasive technology to support active and healthy ageing: An exploration of past, present, and future
Classification of hospital acquired complications using temporal clinical information from a large electronic health record
Automatic identification of recent high impact clinical articles in PubMed to support clinical decision making using time-agnostic features
Extracting interactions between proteins from the literature
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery
A shallow parser based on closed-class words to capture relations in biomedical text
Increasing physical activity using an just-in-time adaptive digital assistant supported by machine learning: A novel approach for hyper-personalised mHealth interventions
Bayesian tensor factorization-drive breast cancer subtyping by integrating multi-omics data
GMDH-based feature ranking and selection for improved classification of medical data
A scalable approach for developing clinical risk prediction applications in different hospitals
Association networks in a matched case-control design - Co-occurrence patterns of preexisting chronic medical conditions in patients with major depression versus their matched controls
Mixed effect machine learning: A framework for predicting longitudinal change in hemoglobin A1c
Ranked Levels of Influence model: Selecting influence techniques to minimize IT resistance
Explainable variational autoencoder (E-VAE) model using genome-wide SNPs to predict dementia
Using an ECG reference ontology for semantic interoperability of ECG data
Bioinformatics service center projects go beyond service
CPAS: A trans-omics pathway analysis tool for jointly analyzing DNA copy number variations and mRNA expression profiles data
Clinical domain knowledge-derived template improves post hoc AI explanations in pneumothorax classification
From narrative descriptions to MedDRA: automagically encoding adverse drug reactions
An ontology for clinical questions about the contents of patient notes
Tracking medical students' clinical experiences using natural language processing
Reducing the question burden of patient reported outcome measures using Bayesian networks
ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model
Enhancing the Precision of ECG Baseline Correction: Selective Filtering and Removal of Residual Error
Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information
Explainable process trace classification: An application to stroke
Causal feature selection using a knowledge graph combining structured knowledge from the biomedical literature and ontologies: A use case studying depression as a risk factor for Alzheimer's disease