yusuke1997/dblp-id-title huggingface dataset:
approxposterior: Approximate Posterior Distributions in Python
Exploring meaningful visual effects and quantities of interest from dynamic models through dynamac
Delira: A High-Level Framework for Deep Learning in Medical Image Analysis
SwiftPol: A Python package for building and parameterizing in silico polymer systems
coxeter: A Python package for working with shapes
ViMag: A Visual Vibration Analysis Toolbox
ungroup: An R package for efficient estimation of smooth distributions from coarsely binned data
pygamma-agreement: Gamma $\gamma$ measure for inter/intra-annotator agreement in Python
shapr: An R-package for explaining machine learning models with dependence-aware Shapley values
pyQCM-BraTaDio: A tool for visualization, data mining, and modelling of Quartz crystal microbalance with dissipation data
c212: An R Package for the Detection of Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)
Jobflow: Computational Workflows Made Simple
quickBayes: An analytical approach to Bayesian marginal likelihoods
STUMPY: A Powerful and Scalable Python Library for Time Series Data Mining
Singularity Compose: Orchestration for Singularity Instances
discourseGT: An R package to analyze discourse networks in educational contexts
ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach
Delta-Rice: A HDF5 Compression Plugin optimized for Digitized Detector Data
NeuralFieldEq.jl: A flexible solver to compute Neural Field Equations in several scenarios
phylogram: an R package for phylogenetic analysis with nested lists
PyLops-MPI - MPI Powered PyLops with mpi4py
OpenOA: An Open-Source Codebase For Operational Analysis of Wind Farms
Caliban: Docker-based job manager for reproducible workflows
rr2: An R package to calculate R 2 s for regression models
SunPy: A Python package for Solar Physics
A Fast Iterative Method Python package
AltamISA: a Python API for ISA-Tab files
CLOOPSy - Copernicus Land cOver crOwdsourcing Platform for Sentinel-based mapping
DynaMo: Dynamic Body Shape and Motion Capture with Intel RealSense Cameras
WRF-CMake: integrating CMake support into the Advanced Research WRF (ARW) modelling system
popclass: A Python Package for Classifying Microlensing Events
pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems
Krylov.jl: A Julia basket of hand-picked Krylov methods
alv: a console-based viewer for molecular sequence alignments
tqdm: A Fast, Extensible Progress Meter for Python and CLI
GREOPy: A Python package for solving the emitter-observer problem in general relativity
GO-RXR: Global Optimization of Resonant X-ray Reflectometry
cbcbeat: an adjoint-enabled framework for computational cardiac electrophysiology
RcppCNPy: Read-Write Support for NumPy Files in R
Visualizing genome synteny with xmatchview
swisslandstats-geopy: Python tools for the land statistics datasets from the Swiss Federal Statistical Office
StochasticDominance.jl: A Julia Package for Higher Order Stochastic Dominance
DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud
LenslessPiCam: A Hardware and Software Platform for Lensless Computational Imaging with a Raspberry Pi
CleanX: A Python library for data cleaning of large sets of radiology images
ssdtools v2: An R package to fit Species Sensitivity Distributions
CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows
CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures
'haldensify': Highly adaptive lasso conditional density estimation in 'R'
Open Source Optical Coherence Tomography Software
ParticleTracker: a gui based particle tracking software
The o80 C++ templated toolbox: Designing customized Python APIs for synchronizing realtime processes
fellingdater: a toolkit to estimate, report and combine felling dates derived from historical tree-ring series
riversCentralAsia: An R package to support data pre- and postprocessing for hydrological modelling with RS MINERVE
EKF_CAL: Extended Kalman Filter-based Calibration and Localization
POSEIDON: A Multidimensional Atmospheric Retrieval Code for Exoplanet Spectra
SpeciesEvolver: A Landlab component to evolve life in simulated landscapes
bayes_spec: A Bayesian Spectral Line Modeling Framework for Astrophysics
cellular_raza: Cellular Agent-based Modeling from a Clean Slate
PyStokes: phoresis and Stokesian hydrodynamics in Python
HyperNetX: A Python package for modeling complex network data as hypergraphs
PyCHAM: CHemistry with Aerosol Microphysics in Python
EMViz (Early Music Visualization): MATLAB runtime application
Comet Time Series Visualizer: CometTS
chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data
MultichannelGPR: A MATLAB tool for Ground Penetrating Radar data processing
BioPsyKit: A Python package for the analysis of biopsychological data
crystal-torture: A crystal tortuosity module
G3F: Global, Multidimensional Spectral Regression Analysis
ImSwitch: Generalizing microscope control in Python
XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library
QDistRnd: A GAP package for computing the distance of quantum error-correcting codes
Detecting Fraud in Online Surveys by Tracing, Scoring, and Visualizing IP Addresses
open-mastr: A Python Package to Download and Process the German Energy Registry Marktstammdatenregister
GALAHAD 4.0: an open source library of Fortran packages with C and Matlab interfaces for continuous optimization
epiworldR: Fast Agent-Based Epi Models
H-RISK with NoiseModelling: a QGIS plugin to predict environmental noise and estimate health risks
GIRFReco.jl: An Open-Source Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia
proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis
PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures
Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi
inAccessMod: An R package to automate data downloading and processing for AccessMod
Ensight4Matlab: read, process, and write files in EnSight® Gold format from C++ or MATLAB®
chirps: API Client for the CHIRPS Precipitation Data in R
Nuclear Morphology Analysis 2.0.0: Improved image analysis software for measuring nuclear shape
autumn: A Python library for dynamic modelling of captured CO~2~ cost potential curves
strauss: Sonification Tools and Resources for Analysis Using Sound Synthesis
ASCENDS: Advanced data SCiENce toolkit for Non-Data Scientists
MOLE: Mimetic Operators Library Enhanced
ComPlot: Comparison Plotter to visually evaluate ocean model simulations
NodeLab: A MATLAB package for meshfree node-generation and adaptive refinement
pyGeo: A geometry package for multidisciplinary design optimization
RCaller: A Java package for interfacing R
dsmmR: Estimation and Simulation of Drifting Semi-Markov Models
pylustrator: code generation for reproducible figures for publication
Adamantine 1.0: A Thermomechanical Simulator for Additive Manufacturing
Biosiglive: an Open-Source Python Package for Real-time Biosignal Processing
geemap: A Python package for interactive mapping with Google Earth Engine
ADaPT-ML: A Data Programming Template for Machine Learning
mwarp1d: Manual one-dimensional data warping in Python and PyQt
Bruker2nifti: Magnetic Resonance Images converter from Bruker ParaVision to Nifti format
DmpBbo: A versatile Python/C++ library for Function Approximation, Dynamical Movement Primitives, and Black-Box Optimization
Comrade: Composable Modeling of Radio Emission
TessPy: a python package for geographical tessellation
The Biddy BDD package
MocoExtendProblem: Interface Between OpenSim and MATLAB for Rapidly Developing Direct Collocation Goals in Moco
openEyeTrack - A high speed multi-threaded eye tracker for head-fixed applications
Virtual Scanner: MRI on a Browser
OMEGA-Py: Python Tools for OMEGA Data
MatSurv: Survival analysis and visualization in MATLAB
PyMatting: A Python Library for Alpha Matting
SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue
Neuropsydia.py: A Python Module for Creating Experiments, Tasks and Questionnaires
HOI: A Python toolbox for high-performance estimation of Higher-Order Interactions from multivariate data
MicroBenthos: a modeling framework for microbial benthic ecology
PatchView: A Python Package for Patch-clamp Data Analysis and Visualization
GATree: Evolutionary decision tree classifier in Python
r2ogs6: An R wrapper of the OpenGeoSys 6 Multiphysics Simulator
AixCaliBuHA: Automated calibration of building and HVAC systems
gdess: A framework for evaluating simulated atmospheric CO~2~ in Earth System Models
Generating fragment density plots in R/Bioconductor with VplotR
byteparsing: a functional parser combinator for mixed ASCII/binary data
MSMetaEnhancer: A Python package for mass spectra metadata annotation
DearScholar: A mobile application to conduct qualitative and quantitative diary research
PsychroLib: a library of psychrometric functions to calculate thermodynamic properties of air
PurpleCaffeine: tracking of quantum programs and experiments
"beamshapes": a Python package to generate directivity patterns for various sound source models
easyCHEM: A Python package for calculating chemical equilibrium abundances in exoplanet atmospheres
PyVOLCANS: A Python package to flexibly explore similarities and differences between volcanic systems
tbeptools: An R package for synthesizing estuarine data for environmental research
RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease
PICOS: A Python interface to conic optimization solvers
Phitter: A library designed to streamline the process of fitting and analyzing probability distributions
Ryacas: A computer algebra system in R
DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane
CRSocket: A web app component facilitating the administration of digital trials from a separate device
Scarplet: A Python package for topographic template matching and diffusion dating
Weave.jl: Scientific Reports Using Julia
OTTO: A Python package to simulate, solve and visualize the source-tracking POMDP
matscipy: materials science at the atomic scale with Python
HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images
splot - visual analytics for spatial statistics
GraphNeT: Graph neural networks for neutrino telescope event reconstruction
Pybotics: Python Toolbox for Robotics
CiteLang: Modeling the Research Software Ecosystem
DiffeRT2d: A Differentiable Ray Tracing Python Framework for Radio Propagation
GNS: A generalizable Graph Neural Network-based simulator for particulate and fluid modeling
EoN (Epidemics on Networks): a fast, flexible Python package for simulation, analytic approximation, and analysis of epidemics on networks
nimCSO: A Nim package for Compositional Space Optimization
SeqMetrics: a unified library for performance metrics calculation in Python
open Delft Advanced Research Terra Simulator (open-DARTS)
OpenHPS: A Modular Framework to Facilitate the Development of FAIR Positioning Systems
ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis
NCBImeta: efficient and comprehensive metadata retrieval from NCBI databases
ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr'
ARCHES PiCar-X: Software for Digital Twin Research
ACTIN: A tool to calculate stellar activity indices
mcboost: Multi-Calibration Boosting for R
sigmajs: An R htmlwidget interface to the sigma.js visualization library
BioSimSpace: An interoperable Python framework for biomolecular simulation
CUDA-METRO: Parallel Metropolis Monte Carlo for 2D Atomistic Spin Texture Simulation
Ciclope: micro Computed Tomography to Finite Elements
BlueCelluLab: Biologically Detailed Neural Network Experimentation API
tell: a Python package to model future total electricity loads in the United States
Triumvirate: A Python/C++ package for three-point clustering measurements
FURY: advanced scientific visualization
QAOA.jl: Toolkit for the Quantum and Mean-Field Approximate Optimization Algorithms
GridTest: testing and metrics collection for Python
QMix: A Python package for simulating the quasiparticle tunneling currents in SIS junctions
RHEOS.jl - A Julia Package for Rheology Data Analysis
gpu-ISTL - Extending OPM Flow with GPU Linear Solvers
cifkit: A Python package for coordination geometry and atomic site analysis
studentlife: Tidy Handling and Navigation of a Valuable Mobile-Health Dataset
MEDUSA: An R tool to model equity and distributional impacts
Varistran: Anscombe's variance stabilizing transformation for RNA-seq gene expression data
tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids
atems: Analysis tools for TEM images of carbonaceous particles
QComms QKD Software Toolkit
SPEI: A Python package for calculating and visualizing drought indices
TSE: A triple stellar evolution code
Ramble: Parser Combinator for R
AutoGAMESS: A Python package for automation of GAMESS(US) Raman calculations
seaborn: statistical data visualization
Kepler Mapper: A flexible Python implementation of the Mapper algorithm
CluSim: a python package for calculating clustering similarity
jointVIP: Prioritizing variables in observational study design with joint variable importance plot in R
DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning
LTRpred: _de novo_ annotation of intact retrotransposons
'StreamPoseML' An End-to-End Open-Source Web Application and Python Toolkit for Real-Time Video Pose Classification and Machine Learning
tidyLPA: An R Package to Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software
NiaAML: AutoML framework based on stochastic population-based nature-inspired algorithms
Scowl: a Scala DSL for programming with the OWL API
thurstonianIRT: Thurstonian IRT Models in R
Computing diffusion coefficients in macromolecular simulations: the Diffusion Coefficient Tool for VMD
portalcasting: Supporting automated forecasting of rodent populations
PRDA: An R package for Prospective and Retrospective Design Analysis
dustmaps: A Python interface for maps of interstellar dust
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications
PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python
COOLEST: COde-independent Organized LEns STandard
rtimicropem: an R package supporting the analysis of RTI MicroPEM output files
calorine: A Python package for constructing and sampling neuroevolution potential models
OpenGeoSysUncertaintyQuantification.jl: a Julia library implementing an uncertainty quantification toolbox for OpenGeoSys
Omnizart: A General Toolbox for Automatic Music Transcription
plater: Read, Tidy, and Display Data from Microtiter Plates
ccviR: an R package and Shiny app to implement the NatureServe Climate Change Vulnerability Index
robot_collision_checking: A Lightweight ROS 2 Interface to FCL (Flexible Collision Library)
Octopus Sensing: A Python library for human behavior studies
WunDeeDB.jl: An easy to use, zero config, WAL, SQLite backend vector database
4DModeller: a spatio-temporal modelling package
TDApplied: An R package for machine learning and inference with persistence diagrams
effectsize: Estimation of Effect Size Indices and Standardized Parameters
emba: R package for analysis and visualization of biomarkers in boolean model ensembles
Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library
SpeechPy - A Library for Speech Processing and Recognition
phasespace: n-body phase space generation in Python
Software Design and User Interface of ESPnet-SE++: Speech Enhancement for Robust Speech Processing
sdmbench: R package for benchmarking species distribution models
SHGYield
Web-based text anonymization with Node.js: Introducing NETANOS (Named entity-based Text Anonymization for Open Science)
StormR: An R package to quantify and map the tropical storms and cyclones' winds characteristics
unifir: A Unifying API for Working with Unity in R
ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language
OSTIR: open source translation initiation rate prediction
Lexedata: A toolbox to edit CLDF lexical datasets
GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference
AutoFunc: A Python package for automating and verifying functional modeling
Council Data Project: Software for Municipal Data Collection, Analysis, and Publication
ctbench - compile-time benchmarking and analysis
Visualizing alpha-helical peptides in R with helixvis
PII-Codex: a Python library for PII detection, categorization, and severity assessment
General binary file parser
tidyfst: Tidy Verbs for Fast Data Manipulation
mctreesearch4j: A Monte Carlo Tree Search Implementation for the JVM
SolvationAnalysis: A Python toolkit for understanding liquid solvation structure in classical molecular dynamics simulations
SeroTools: a Python package for Salmonella serotype data analysis
Managing Larger Data on a GitHub Repository
Biotrade: A Python package to access and analyse the international trade of bio-based products
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics
ALUES: R package for Agricultural Land Use Evaluation System
heatwaveR: A central algorithm for the detection of heatwaves and cold-spells
MapReader: Open software for the visual analysis of maps
fishStan: Hierarchical Bayesian models for fisheries
Methods and Algorithms for Correlation Analysis in R
Flux: Elegant machine learning with Julia
nrt: operational monitoring of satellite image time-series in Python
E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamers with Ligands
SweetBean: A declarative language for behavioral experiments with human and artificial participants
dropout: an R Package for Addressing Dropouts, Missing Values, and Sectional Challenges in Survey Data Analysis
scikit-posthocs: Pairwise multiple comparison tests in Python
univariateML: An R package for maximum likelihood estimation of univariate densities
ChemPy: A package useful for chemistry written in Python
cRacklet: a spectral boundary integral method library for interfacial rupture simulation
daiR: an R package for OCR with Google Document AI
PySD: System Dynamics Modeling in Python
Torque-limited simple pendulum: A toolkit for getting familiar with control algorithms in underactuated robotics
Pherosensor-toolbox: a Python package for Biology-Informed Data Assimilation
Retriever: Data Retrieval Tool
VlaPy: A Python package for Eulerian Vlasov-Poisson-Fokker-Planck Simulations
VisWaterNet: A Python package for visualization of water distribution networks
SelfEEG: A Python library for Self-Supervised Learning in Electroencephalography
pylattica: a package for prototyping lattice models in chemistry and materials science
GPP, the Generic Preprocessor
ETHOS.FINE: A Framework for Integrated Energy System Assessment
multipers : Multiparameter Persistence for Machine Learning
stardate: Combining dating methods for better stellar ages
MiNAA: Microbiome Network Alignment Algorithm
PATATO: a Python photoacoustic tomography analysis toolkit
CoralP: Flexible visualization of the human phosphatome
Panako: a scalable audio search system
Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes
pyTCR: A tropical cyclone rainfall model for python
biotmle: Targeted Learning for Biomarker Discovery
Hypothesize: Robust Statistics for Python
IDCeMPy: Python Package for Inflated Discrete Choice Models
GRChombo: An adaptable numerical relativity code for fundamental physics
CRED: a rapid peak caller for Chem-seq data
BridgeStan: Efficient in-memory access to the methods of a Stan model
FluxCalR: a R package for calculating CO~2~ and CH~4~ fluxes from static chambers
origami: A Generalized Framework for Cross-Validation in R
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries
Mat-dp: An open-source Python model for analysing material demand projections and their environmental implications, which result from building low-carbon systems
A Python module to combine $p$ values arising from discrete tests
LinkingLines: Using the Hough Transform to Cluster Line Segments and Mesoscale Feature Extraction
Oceananigans.jl: Fast and friendly geophysical fluid dynamics on GPUs
NPSdataverse: a suite of R packages for data processing, authoring Ecological Metadata Language metadata, checking data-metadata congruence, and accessing data
SkyPortal: An Astronomical Data Platform
pydynpd: A Python package for dynamic panel model
Sigma: Uncertainty Propagation for C++
Jupyter Scatter: Interactive Exploration of Large-Scale Datasets
argodata: An R interface to oceanographic data from the International Argo Program
COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements
mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines
MMM: A C++ library for simulating large herbivores
3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI
MOTrainer: Distributed Measurement Operator Trainer for Data Assimilation Applications
PySINDy: A comprehensive Python package for robust sparse system identification
pycoQC, interactive quality control for Oxford Nanopore Sequencing
fleck: Fast approximate light curves for starspot rotational modulation
ms3: A parser for MuseScore files, serving as data factory for annotated music corpora
fuse: An R package for ensemble Hydrological Modelling
GWSurrogate: A Python package for gravitational wave surrogate models
BayesEoR: Bayesian 21-cm Power Spectrum Estimation from Interferometric Visibilities
cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R
dms2dfe: Comprehensive Workflow for Analysis of Deep Mutational Scanning Data
Osprey: Hyperparameter Optimization for Machine Learning
cstag and cstag-cli: tools for manipulating and visualizing cs tags
ysoisochrone: A Python package to estimate masses and ages for YSOs
BioDeg: A finite element software for the simulation of the corrosion and biodegradation process in metallic biomaterials
mTower: Trusted Execution Environment for MCU-based devices
qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots
ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access
RHRT: An R package to assess Heart Rate Turbulence
Statmanager-kr: A User-friendly Statistical Package for Python in Pandas
Paraqus: Exporting Finite Element Simulation Results from Abaqus to VTK
VILLASnode: An Open-Source Real-time Multi-protocol Gateway
Raphtory: The temporal graph engine for Rust and Python
datastructures: An R package for organisation and storage of data
Stokesian Dynamics in Python
deeplenstronomy: A dataset simulation package for strong gravitational lensing
'SimilaritySearch.jl': Autotuned nearest neighbor indexes for Julia
biorbd: A C++, Python and MATLAB library to analyze and simulate the human body biomechanics
MODE.behave: A Python Package for Discrete Choice Modeling
mlpack 4: a fast, header-only C++ machine learning library
RCzechia: Spatial Objects of the Czech Republic
predictNMB: An R package to estimate if or when a clinical prediction model is worthwhile
pyGPGO: Bayesian Optimization for Python
InvertibleNetworks.jl: A Julia package for scalable normalizing flows
pyCeterisParibus: explaining Machine Learning models with Ceteris Paribus Profiles in Python
Eir: A Python Package for Epidemic Simulation
EFAshiny: An User-Friendly Shiny Application for Exploratory Factor Analysis
High-performance neural population dynamics modeling enabled by scalable computational infrastructure
Bernadette: Bayesian Inference and Model Selection for Stochastic Epidemics in R
ReproZip: The Reproducibility Packer
VaMPy: An Automated and Objective Pipeline for Modeling Vascular Geometries