yusuke1997/dblp-id-title huggingface dataset:
Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety
Research-IQ: Development and evaluation of an ontology-anchored integrative query tool
Applying hybrid reasoning to mine for associative features in biological data
The aging of a clinical information system
A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications
Predicting treatment process steps from events
An analysis of FMA using structural self-bisimilarity
Informatics methods in medical privacy
Uncovering hidden subtypes in dementia: An unsupervised machine learning approach to dementia diagnosis and personalization of care
Combining automatic table classification and relationship extraction in extracting anticancer drug-side effect pairs from full-text articles
Health text simplification: An annotated corpus for digestive cancer education and novel strategies for reinforcement learning
A novel deep interval type-2 fuzzy LSTM (DIT2FLSTM) model applied to COVID-19 pandemic time-series prediction
A neural network-based biomarker association information extraction approach for cancer classification
Pattern-based strategic surgical capacity allocation
Visualizing evolution and impact of biomedical fields
Implementing ReliefF filters to extract meaningful features from genetic lifetime datasets
Analysis of ISO/IEEE 11073 built-in security and its potential IHE-based extensibility
Adversarial training based lattice LSTM for Chinese clinical named entity recognition
A dual-attention based coupling network for diabetes classification with heterogeneous data
Beyond TAM and UTAUT: Future directions for HIT implementation research
Histology image search using multimodal fusion
A spline-based tool to assess and visualize the calibration of multiclass risk predictions
Modelling patient trajectories using multimodal information
Analysis of the cognitive demands of electronic health record use
A declarative approach for interactive process discovery in the clinical domain
Health GIS and HIV/AIDS studies: Perspective and retrospective
A unified graph model based on molecular data binning for disease subtyping
Individual health-disease phase diagrams for disease prevention based on machine learning
Controlling for Chance Agreement in the Validation of Medical Expert Systems with No Gold Standard: PNEUMON-IA and RENOIR Revisited
Identifying reasoning strategies in medical decision making: A methodological guide
Profile-based assessment of diseases affective factors using fuzzy association rule mining approach: A case study in heart diseases
Winning compensations: Adaptable gaming approach for upper limb rehabilitation sessions based on compensatory movements
Analysis of topographical distribution of prostate cancer and related pathological findings in prostatectomy specimens using cMDX document architecture
Incorporating comorbidities into latent treatment pattern mining for clinical pathways
Feature-guided clustering of multi-dimensional flow cytometry datasets
Desiderata for domain reference ontologies in biomedicine
Medical concept normalization in social media posts with recurrent neural networks
Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps
Beyond manual transcripts: Exploring the potential of automatic speech recognition errors in improving Alzheimer's disease detection
Visualization and analytics tools for infectious disease epidemiology: A systematic review
Patients' involvement in e-health services quality assessment: A system for the automatic interpretation of SMS-based patients' feedback
Enhancing metabolic event extraction performance with multitask learning concept
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text
Using network projections to explore co-incidence and context in large clinical datasets: Application to homelessness among U.S. Veterans
Targeting the uncertainty of predictions at patient-level using an ensemble of classifiers coupled with calibration methods, Venn-ABERS, and Conformal Predictors: A case study in AD
Clinical decision-making framework against over-testing based on modeling implicit evaluation criteria
What's Ideal? A case study exploring handoff routines in practice
Design and implementation of the GLIF3 guideline execution engine
BioLattice: A framework for the biological interpretation of microarray gene expression data using concept lattice analysis
PerKApp: A general purpose persuasion architecture for healthy lifestyles
A PSO-based rule extractor for medical diagnosis
A decision support system for antibiotic prescription based on local cumulative antibiograms
Domain transformation on biological event extraction by learning methods
Modified Needleman-Wunsch algorithm for clinical pathway clustering
Stratifying individuals into non-alcoholic fatty liver disease risk levels using time series machine learning models
A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences
Enabling semantic similarity estimation across multiple ontologies: An evaluation in the biomedical domain
Accelerating probabilistic privacy-preserving medical record linkage: A three-party MPC approach
A systematic mapping study of semantic technologies in multi-omics data integration
Multi-scale cancer driver gene prediction by flexible data selection and network topology guidance
Representing and utilizing clinical textual data for real world studies: An OHDSI approach
Enhancing clinical concept extraction with distributional semantics
A declarative implementation of the DICOM-3 network protocol
Causal discovery using compression-complexity measures
Deep learning and Gaussian Mixture Modelling clustering mix. A new approach for fetal morphology view plane differentiation
Federated Aggregate Cohort Estimator (FACE): An easy to deploy, vendor neutral, multi-institutional cohort query architecture
Textual emotion detection in health: Advances and applications
Dimensions of ecological validity for usability evaluations in clinical settings
An evaluation method of risk grades for prostate cancer using similarity measure of cubic hesitant fuzzy sets
Understanding common key indicators of successful and unsuccessful cancer drug trials using a contrast mining framework on ClinicalTrials.gov
A utility-based machine learning-driven personalized lifestyle recommendation for cardiovascular disease prevention
Systematic comparison of the protein-protein interaction databases from a user's perspective
Probabilistic classifiers and automated cancer registration: An exploratory application
Evaluating measures of semantic similarity and relatedness to disambiguate terms in biomedical text
A frame-based representation for a bedside ventilator weaning protocol
A novel web informatics approach for automated surveillance of cancer mortality trends
How are you feeling?: A personalized methodology for predicting mental states from temporally observable physical and behavioral information
Predicting neonatal respiratory distress syndrome and hypoglycaemia prior to discharge: Leveraging health administrative data and machine learning
Time-range based sequential mining for survival prediction in prostate cancer
Strategies for referent tracking in electronic health records
PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies
Optimal design of clinical trials with computer simulation based on results of earlier trials, illustrated with a lipodystrophy trial in HIV patients
Effects of sensory cueing in virtual motor rehabilitation. A review
AdaDiag: Adversarial Domain Adaptation of Diagnostic Prediction with Clinical Event Sequences
Extracting biomedical relation from cross-sentence text using syntactic dependency graph attention network
Exploring methods for identifying related patient safety events using structured and unstructured data
DEGBOE: Discrete time Evolution modeling of Gene mutation through Bayesian inference using qualitative Observation of mutation Events
A Health Information Network for Managing Innercity Tuberculosis: Bridging Clinical Care, Public Health, and Home Care ,
The ranking of scientists based on scientific publications assessment
Hybrid visualization-based framework for depressive state detection and characterization of atypical patients
Applying evolutionary terminology auditing to the Gene Ontology
Biomedical text mining and its applications in cancer research
PARS, a system combining semantic technologies with multiple criteria decision aiding for supporting antibiotic prescriptions
Call for papers: Special issue on biomedical multimodal large language models - novel approaches and applications
AskHERMES: An online question answering system for complex clinical questions
Disease evolution and risk-based disease trajectories in congestive heart failure patients
Multi-task learning models for predicting active compounds
AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease
Who needs what (features) when? Personalizing engagement with data-driven self-management to improve health equity
A content-based literature recommendation system for datasets to improve data reusability - A case study on Gene Expression Omnibus (GEO) datasets
Background adjustment of cDNA microarray images by Maximum Entropy distributions
Online scheduling of pick-up and delivery tasks in hospitals
Automatic endpoint detection to support the systematic review process
Advancing causal inference in medicine using biobank data
Politics and technology in health information systems development: A discourse analysis of conflicts addressed in a systems design group
Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge
Unintended consequences of health information technology: A need for biomedical informatics
Biomedical named entity recognition using two-phase model based on SVMs
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets
The utility of LASSO-based models for real time forecasts of endemic infectious diseases: A cross country comparison
Induction of comprehensible models for gene expression datasets by subgroup discovery methodology
The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text
A Dynamic Bayesian Network model for long-term simulation of clinical complications in type 1 diabetes
Challenges and solutions implementing an SMS text message-based survey CASI and adherence reminders in an international biomedical HIV PrEP study (MTN 017)
User-designed information tools to support communication and care coordination in a trauma hospital
Model-driven approach to data collection and reporting for quality improvement
Development of a two-stage gene selection method that incorporates a novel hybrid approach using the cuckoo optimization algorithm and harmony search for cancer classification
A Computer Program to Calculate Indicators of Descriptive Epidemiology
SemNovel - A new approach to detecting semantic novelty of biomedical publications using embeddings of large language models
Call for papers: Semantics-enabled biomedical literature analytics
Word embeddings trained on published case reports are lightweight, effective for clinical tasks, and free of protected health information
A gradient boosting tree model for multi-department venous thromboembolism risk assessment with imbalanced data
Towards a characterization of apparent contradictions in the biomedical literature using context analysis
Letter to Editor: Consistent Reporting of Reusable PhenX CDEs in the NIH Common Data Elements Repository
Cognitive and learning sciences in biomedical and health instructional design: A review with lessons for biomedical informatics education
Large Language Models, scientific knowledge and factuality: A framework to streamline human expert evaluation
Knowledge-aware patient representation learning for multiple disease subtypes
A mixed-methods evaluation framework for electronic health records usability studies
A bootstrapping algorithm to improve cohort identification using structured data
Using visual analytics for presenting comparative information on new drugs
Fusion framework: Conditional-aware one-stage nested event extraction model
Conceptualization and application of an approach for designing healthcare software interfaces
Monitoring strategies for continuous evaluation of deployed clinical prediction models
Classification of toxicity effects of biotransformed hepatic drugs using whale optimized support vector machines
Inferring cell cycle feedback regulation from gene expression data
Augmenting biomedical named entity recognition with general-domain resources
Research on structural issues of the UMLS - past, present, and future
Identifying potential adverse effects using the web: A new approach to medical hypothesis generation
A practical method for transforming free-text eligibility criteria into computable criteria
Standardization of immunotherapy adverse events in patient information leaflets and development of an interface terminology for outpatients' monitoring
Prognostic Bayesian networks: II: An application in the domain of cardiac surgery
Identification, analysis, and interpretation of a human serum metabolomics causal network in an observational study
Traditional Chinese medicine symptom normalization approach leveraging hierarchical semantic information and text matching with attention mechanism
Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS
Deep learning in surgical process modeling: A systematic review of workflow recognition
Health information exchange through a Device-to-Device protocol supporting lossless encoding and decoding
A novel generalized belief structure comprising unprecisiated uncertainty applied to aphasia diagnosis
Improving large language models for adverse drug reactions named entity recognition via error correction prompt engineering
Telephone-linked care for physical activity: A qualitative evaluation of the use patterns of an information technology program for patients
Semisupervised neural biomedical sense disambiguation approach for aspect-based sentiment analysis on social networks
A two-stage deep learning approach for extracting entities and relationships from medical texts
Visual aggregate analysis of eligibility features of clinical trials
A statistical methodology for analyzing co-occurrence data from a large sample
Continuous-time probabilistic models for longitudinal electronic health records
Computational strategies in nutrigenetics: Constructing a reference dataset of nutrition-associated genetic polymorphisms
Heterogeneous Database Integration in Biomedicine
A Comparison of Classification Algorithms to Automatically Identify Chest X-Ray Reports That Support Pneumonia
Simulated pathogenic conformational switch regions matched well with the biochemical findings
Digital twins in increasing diversity in clinical trials: A systematic review
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO)
Evaluation of an automated phenotyping algorithm for rheumatoid arthritis
Development of a hand-held computer platform for real-time behavioral assessment of physicians and nurses
The use of networks in spatial and temporal computational models for outbreak spread in epidemiology: A systematic review
A method for comparing multiple imputation techniques: A case study on the U.S. national COVID cohort collaborative
Algorithms for rapid outbreak detection: a research synthesis
Understanding semantic mapping evolution by observing changes in biomedical ontologies
Interestingness measures and strategies for mining multi-ontology multi-level association rules from gene ontology annotations for the discovery of new GO relationships
Multiple valued logic approach for matching patient records in multiple databases
RedMed: Extending drug lexicons for social media applications
Comparison between passive vision-based system and a wearable inertial-based system for estimating temporal gait parameters related to the GAITRite electronic walkway
Semantics based approach for analyzing disease-target associations
Extracting COVID-19 diagnoses and symptoms from clinical text: A new annotated corpus and neural event extraction framework
Predicting drug-target interactions based on multivariate information fusion and graph contrast learning
IRB reliance: An informatics approach
Feasibility of encoding the Institute for Clinical Systems Improvement Depression Guideline using the Omaha System
A study of terminology auditors' performance for UMLS semantic type assignments
Health information technology and health information exchange in New York State: New initiatives in implementation and evaluation
OWL-based reasoning methods for validating archetypes
Identifying plausible adverse drug reactions using knowledge extracted from the literature
Justifying diagnosis decisions by deep neural networks
Discovering hidden knowledge through auditing clinical diagnostic knowledge bases
TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries
PLRTE: Progressive learning for biomedical relation triplet extraction using large language models
Prediction of microRNAs involved in immune system diseases through network based features
A transformer-based deep learning approach for fairly predicting post-liver transplant risk factors
Optimizing Drug Regimens in Cancer Chemotherapy by an Efficacy-Toxicity Mathematical Model
Use of an Interactive Tool to Assess Patients' Willingness-to-Pay
Corrigendum to "A federated semantic metadata registry framework for enabling interoperability across clinical research and care domains" [J. Biomed. Inf. 46(5) (2013) 784-794]
The potential of latent semantic analysis for machine grading of clinical case summaries
Supervised line attention for tumor attribute classification from pathology reports: Higher performance with less data
Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1
Exploring the ncRNA-ncRNA patterns based on bridging rules
Interacting agents through a web-based health serviceflow management system
Development and validation of a surgical training simulator with haptic feedback for learning bone-sawing skill
Applying formalized rules for treatment procedures to data delivered by personal medical devices
The Communication and Care Plan: A novel approach to patient-centered clinical information systems
IoT-based GPS assisted surveillance system with inter-WBAN geographic routing for pandemic situations
Biomedical informatics training at Stanford in the 21st century
Extracting chemical-induced disease relation by integrating a hierarchical concentrative attention and a hybrid graph-based neural network
Counterfactual formulation of patient-specific root causes of disease
A frame semantic overview of NLP-based information extraction for cancer-related EHR notes
Toward a framework for understanding lay public's comprehension of disaster and bioterrorism information
In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access
Using hidden Markov model to predict recurrence of breast cancer based on sequential patterns in gene expression profiles
Efficient and sparse feature selection for biomedical text classification via the elastic net: Application to ICU risk stratification from nursing notes
Detecting high-quality signals of adverse drug-drug interactions from spontaneous reporting data
A supervised adverse drug reaction signalling framework imitating Bradford Hill's causality considerations
Knowledge-aware attention network for protein-protein interaction extraction
BAMRE: Joint extraction model of Chinese medical entities and relations based on Biaffine transformation with relation attention
Best Parameters Selection for Wavelet Packet-Based Compression of Magnetic Resonance Images
Study of gene expressions' correlation structures in subgroups of Chronic Lymphocytic Leukemia Patients
Infrastructure for dynamic knowledge integration - Automated biomedical ontology extension using textual resources
Health outcomes and related effects of using social media in chronic disease management: A literature review and analysis of affordances
Explainable clinical coding with in-domain adapted transformers
Development of a clinician reputation metric to identify appropriate problem-medication pairs in a crowdsourced knowledge base
Gene selection for tumor classification using neighborhood rough sets and entropy measures
Security and privacy in electronic health records: A systematic literature review
An Archetype Query Language interpreter into MongoDB: Managing NoSQL standardized Electronic Health Record extracts systems
Hierarchical data security in a Query-By-Example interface for a shared database
Converting clinical document architecture documents to the common data model for incorporating health information exchange data in observational health studies: CDA to CDM
Exploration of text matching methods in Chinese disease Q&A systems: A method using ensemble based on BERT and boosted tree models
Current methodologies for translational bioinformatics
Sleep apnea test prediction based on Electronic Health Records
Ensemble machine learning model trained on a new synthesized dataset generalizes well for stress prediction using wearable devices
Discovery of high-level tasks in the operating room
Risk analysis of a patient monitoring system using Bayesian Network modeling
Patient clustering improves efficiency of federated machine learning to predict mortality and hospital stay time using distributed electronic medical records
Using genomics to help predict drug interactions
Network inference from multimodal data: A review of approaches from infectious disease transmission
A visual approach to facilitating conversations about supportive care options in the context of cognitive impairment
Multimodal large language models for medical image diagnosis: Challenges and opportunities
Cadec: A corpus of adverse drug event annotations
Redesigning electronic health record systems to support public health
Exploring medical device design and use through layers of Distributed Cognition: How a glucometer is coupled with its context
Sampling rate and heart rate variability: On metrics and health outcomes
A flexible framework for visualizing and exploring patient misdiagnosis over time
Automated Sleep Stage Scoring Using Hybrid Rule- and Case-Based Reasoning
Designing mobile support for glycemic control in patients with diabetes
An information model to support user-centered design of medical devices
Ontology modularization to improve semantic medical image annotation
Genome-wide analysis of multi-view data of miRNA-seq to identify miRNA biomarkers for stomach cancer
Reconciling disparate information in continuity of care documents: Piloting a system to consolidate structured clinical documents
Transfer learning for a tabular-to-image approach: A case study for cardiovascular disease prediction
Personally Managed Health Data: Barriers, Approaches, and a Roadmap for the Future
Improving accuracy for identifying related PubMed queries by an integrated approach
Lessons learnt from the DDIExtraction-2013 Shared Task
NanoParticle Ontology for cancer nanotechnology research
Characterizing the structure and content of nurse handoffs: A Sequential Conversational Analysis approach
PDF text classification to leverage information extraction from publication reports
Detecting pathway biomarkers of diabetic progression with differential entropy
Drug repurposing for COVID-19 via knowledge graph completion
Tree kernel-based protein-protein interaction extraction from biomedical literature
Towards generalizable entity-centric clinical coreference resolution
Detecting concept relations in clinical text: Insights from a state-of-the-art model