yusuke1997/dblp-id-title huggingface dataset:
goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience
Cellpy - an open-source library for processing and analysis of battery testing data
Bedtoolsr: An R package for genomic data analysis and manipulation
ODES: a high level interface to ODE and DAE solvers
Open-Source Pattern Creation Tool for Medical Extended Reality Image Quality Assessment
DataScribe: An Omeka S module for structured data transcription
Lighter: Configuration-Driven Deep Learning
UnfoldSim.jl: Simulating continuous event-based time series data for EEG and beyond
The fqar package: R tools for analyzing floristic quality assessment data
PointClouds.jl: Fast & flexible processing of lidar data
enetLTS: Robust and Sparse Methods for High Dimensional Linear, Binary, and Multinomial Regression
slurmR: A lightweight wrapper for HPC with Slurm
TopoPyScale: A Python Package for Hillslope Climate Downscaling
kep_solver: A Python package for kidney exchange programme exploration
strucscan: A lightweight Python-based framework for high-throughput material simulation
plutus: An R package to calculate electricity investments and stranded assets from the Global Change Analysis Model (GCAM)
Analytic continuation component of the GreenX library: robust Padé approximants with symmetry constraints
SeqTools: A python package for easy transformation, combination and evaluation of large datasets
MatDL: A Lightweight Deep Learning Library in MATLAB
RelativisticDynamics.jl: Relativistic Spin-Orbital Dynamics in Julia
WATTS: Workflow and template toolkit for simulation
DWBuilder: A code to generate ferroelectric/ferroelastic domain walls and multi-material atomic interface structures
Atomic Simulation Interface (ASI): application programming interface for electronic structure codes
rdata: A Python library for R datasets
CLPFUDatabase: A suite of R packages for energy conversion chain analysis
Launcher: A simple tool for executing high throughput computing workloads
Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees
AtlasReader: A Python package to generate coordinate tables, region labels, and informative figures from statistical MRI images
Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains
iharm3D: Vectorized General Relativistic Magnetohydrodynamics
mTRFpy: A Python package for temporal response function analysis
FeenoX: a cloud-first finite-element(ish) computational engineering tool
islatu: A Python package for the reduction of reflectometry data
s(ound)lab: An easy to learn Python package for designing and running psychoacoustic experiments
SarcGraph: A Python package for analyzing the contractile behavior of pluripotent stem cell-derived cardiomyocytes
FEniCS-arclength: A numerical continuation package in FEniCS for nonlinear problems in solid mechanics
medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R
ginjax: E(d)-Equivariant CNN for Tensor Images
WaveletsExt.jl: Extending the boundaries of wavelets in Julia
RAFF.jl: Robust Algebraic Fitting Function in Julia
MDPSolver: An Efficient Solver for Markov Decision Processes
Sepia, a taxonomy oriented read classifier in Rust
humanleague: a C++ microsynthesis package with R and python interfaces
BayesMFSurv: An R Package to Estimate Bayesian Split-Population Survival Models With (and Without) Misclassified Failure Events
covtobed: a simple and fast tool to extract coverage tracks from BAM files
Go-HEP: libraries for High Energy Physics analyses in Go
alchemlyb: the simple alchemistry library
Noisyopt: A Python library for optimizing noisy functions
Empirical and non-parametric copula models with the cort R package
OpenSkill: A faster asymmetric multi-team, multiplayer rating system
jax-smfsb: A Python library for stochastic systems biology modelling and inference
ImagingReso: A Tool for Neutron Resonance Imaging
Systole: A python package for cardiac signal synchrony and analysis
Missingno: a missing data visualization suite
Economiccomplexity: Computational Methods for Economic Complexity
rbmi: A R package for standard and reference-based multiple imputation methods
DataAssimilationBenchmarks.jl: a data assimilation research framework
DEVSIM: A TCAD Semiconductor Device Simulator
microViz: an R package for microbiome data visualization and statistics
kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust
MCMCvis: Tools to Visualize, Manipulate, and Summarize MCMC Output
sacio: A library for Seismic Analysis Code data files
TUM Open Infra Platform: an open source package for simultaneous viewing and analysis of digital models in the civil engineering domain
Pywaterflood: Well connectivity analysis through capacitance-resistance modeling
Overlapping: a R package for Estimating Overlapping in Empirical Distributions
Adeft: Acromine-based Disambiguation of Entities from Text with applications to the biomedical literature
egtplot: A Python Package for Three-Strategy Evolutionary Games
NiBetaSeries: task related correlations in fMRI
KMC\_Lattice v2.0: An Object-Oriented C\texttt{++} Library for Custom Kinetic Monte Carlo Simulations
WearableHRV: A Python package for the validation of heart rate and heart rate variability in wearables
shipgrav: A Python package for marine gravimetry
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees
dms-view: Interactive visualization tool for deep mutational scanning data
DistributedSparseGrids.jl: A Julia library implementing an Adaptive Sparse Grid collocation method
DAPPER: Data Assimilation with Python: a Package for Experimental Research
VOTCA: multiscale frameworks for quantum and classical simulations in soft matter
Prest: Open-Source Software for Computational Revealed Preference Analysis
glottospace: R package for language mapping and geospatial analysis of linguistic and cultural data
Mosquitto: server and client implementation of the MQTT protocol
mixComp: An R package for estimating complexity of a mixture
jtools: Analysis and Presentation of Social Scientific Data
CurvilinearGrids.jl: A Julia package for curvilinear coordinate transformations
datawizard: An R Package for Easy Data Preparation and Statistical Transformations
SimpleFOC: A Field Oriented Control (FOC) Library for Controlling Brushless Direct Current (BLDC) and Stepper Motors
Integrated hydrologic model development and postprocessing for GSFLOW using pyGSFLOW
Akmedoids R package for generating directionally-homogeneous clusters of longitudinal data sets
ngsPETSc: A coupling between NETGEN/NGSolve and PETSc
COVID-19 Lung Segmentation
mathlib: A Scala package for readable, verifiable and sustainable simulations of formal theory
TriP: A Python package for the kinematic modeling of serial-parallel hybrid robots
ParticleTracking: A GUI and library for particle tracking on stereo camera images
GlobalSensitivity.jl: Performant and Parallel Global Sensitivity Analysis with Julia
ADI.jl: A Julia Package for High-Contrast Imaging
Xbim.Essentials: a library for interoperable building information applications
Gillespie.jl: Stochastic Simulation Algorithm in Julia
FLAM: Fast Linear Algebra in MATLAB - Algorithms for Hierarchical Matrices
SEP: Source Extractor as a library
UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines
ReLax: Efficient and Scalable Recourse Explanation Benchmarking using JAX
Interface to high-performance periodic coupled-cluster theory calculations with atom-centered, localized basis functions
prisonbrief: An R package that returns tidy data from the World Prison Brief website
dataquieR 2: An updated R package for FAIR data quality assessments in observational studies and electronic health record data
Verde: Processing and gridding spatial data using Green's functions
StreamGen: a Python framework for generating streams of labeled data
TLViz: Visualising and analysing tensor decomposition models with Python
COBRAPRO: A MATLAB toolbox for Physics-based Battery Modeling and Co-simulation Parameter Optimization
Python Active-subspaces Utility Library
pypbomb: A Python package with tools for the design of detonation tubes
SATLLA0: A Flight Software Platform for Aerospace and STEM Education
PyXAB - A Python Library for \mathcal{X}-Armed Bandit and Online Blackbox Optimization Algorithms
LinRegOutliers: A Julia package for detecting outliers in linear regression
VTUFileHandler: A VTU library in the Julia language that implements an algebra for basic mathematical operations on VTU data
papaya2: 2D Irreducible Minkowski Tensor computation
ewstools: A Python package for early warning signals of bifurcations in time series data
The 2DECOMP&FFT library: an update with new CPU/GPU capabilities
QMRTools: a Mathematica toolbox for quantitative MRI analysis
EphemerisSources.jl: Idiomatic Ephemeris Sourcing and Parsing in Julia
QMCTorch: a PyTorch Implementation of Real-Space Quantum Monte Carlo Simulations of Molecular Systems
UXsim: lightweight mesoscopic traffic flow simulator in pure Python
adrt: approximate discrete Radon transform for Python
UQit: A Python package for uncertainty quantification (UQ) in computational fluid dynamics (CFD)
GASTLI: A Python package for coupled interior-atmosphere modelling of volatile-rich planets
GeoClimate: a Geospatial processing toolbox for environmental and climate studies
Sciris: Simplifying scientific software in Python
Snowdrop: Python Package for DSGE Modeling
CoPro: a data-driven modelling framework for conflict risk projections
NIMPHS: Numerous Instruments to Manipulate and Post-process Hydraulic Simulations
CancerSim: A Cancer Simulation Package for Python 3
molic: An R package for multivariate outlier detection in contingency tables
Django Remote Submission
SBArchOpt: Surrogate-Based Architecture Optimization
optimade-python-tools: a Python library for serving and consuming materials data via OPTIMADE APIs
COLNA: A Python Package to Analyze Complex, Linear Networks
PorousFlow: a multiphysics simulation code for coupled problems in porous media
RingsPy: A Python package for Voronoi mesh generation of cellular solids with radial growth pattern
GEMMI: A library for structural biology
t8code - modular adaptive mesh refinement in the exascale era
SphericalScattering: A Julia Package for Electromagnetic Scattering from Spherical Objects
HARE: A Python workflow for analyzing genomic feature enrichment in GWAS datasets
Choice-Learn: Large-scale choice modeling for operational contexts through the lens of machine learning
wdpar: Interface to the World Database on Protected Areas
PySwarms: a research toolkit for Particle Swarm Optimization in Python
hetGPy: Heteroskedastic Gaussian Process Modeling in Python
niacin: A Python package for text data enrichment
Ecos: An accessible and intuitive co-simulation framework
refsplitr: Author name disambiguation, author georeferencing, and mapping of coauthorship networks with Web of Science data
Viash: A meta-framework for building reusable workflow modules
TidyTensor: Utilities for multidimensional arrays as named hierarchical structures
fMRIStroke: A preprocessing pipeline for fMRI Data from Stroke patients
PASCal Python: A Principal Axis Strain Calculator
TimeseriesSurrogates.jl: a Julia package for generating surrogate data
PyDGN: a Python Library for Flexible and Reproducible Research on Deep Learning for Graphs
Using the tidyverse with terra objects: the tidyterra package
SyntheticEddyMethod.jl: A Julia package for the creation of inlet flow conditions for LES
popkinmocks: mock IFU datacubes for modelling stellar populations and kinematics
Shenfun: High performance spectral Galerkin computing platform
tcherry: Learning the structure of tcherry trees
HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS
Jabberwocky: an ontology-aware toolkit for manipulating text
Renard: A Modular Pipeline for Extracting Character Networks from Narrative Texts
opt\_einsum - A Python package for optimizing contraction order for einsum-like expressions
MoFEM: An open source, parallel finite element library
The Vascular Modeling Toolkit: A Python Library for the Analysis of Tubular Structures in Medical Images
Pycashier: cash in on DNA barcode tags
ATHENA: A Fortran package for neural networks
Paicos: A Python package for analysis of (cosmological) simulations performed with Arepo
WSKNN - Weighted Session-based K-NN recommender system
Frackit: a framework for stochastic fracture network generation and analysis
Akantu: an HPC finite-element library for contact and dynamic fracture simulations
modelStudio: Interactive Studio with Explanations for ML Predictive Models
gesel: a JavaScript package for client-side gene set enrichment
powerbox: A Python package for creating structured fields with isotropic power spectra
spike: A Tool to Drizzle HST, JWST, and Roman PSFs for Improved Analyses
serp: An R package for smoothing in ordinal regression
BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology
DeepOF: a Python package for supervised and unsupervised pattern recognition in mice motion tracking data
Chemiscope: interactive structure-property explorer for materials and molecules
GMSimViz: Automated 3D Visualization of Ground Motion Simulation with Generic Mapping Tools (GMT)
js-emass: A flexible JavaScript implementation of the emass algorithm
Hardware-Control: Instrument control and automation package
OApackage: A Python package for generation and analysis of orthogonal arrays, optimal designs and conference designs
LCOI: Local crystalline orientation identifier using mask fitting implemented in MATLAB
Visions: An Open-Source Library for Semantic Data
whalestrike: An R package for simulating ship strikes on whales
neurone_loader: A Python module for loading EEG data recorded with Bittium NeurOne
NeuroDSP: A package for neural digital signal processing
AtomNeb Python Package, an addendum to AtomNeb: IDL Library for Atomic Data of Ionized Nebulae
wmpy-power: A Python package for process-based regional hydropower simulation
ppiclF: A Parallel Particle-In-Cell Library in Fortran
CTSEG: A segment picture quantum impurity solver based on TRIQS
Cabana: A Performance Portable Library for Particle-Based Simulations
DVRlib: A C++ library for geometric mesh improvement using Directional Vertex Relaxation
EZyRB: Easy Reduced Basis method
NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality
SigCorr: A Python package for studies of trials factors
pointcloudset: Efficient Analysis of Large Datasets of Point Clouds Recorded Over Time
LiberTEM: Software platform for scalable multidimensional data processing in transmission electron microscopy
Eniric: Extended NIR Information Content
Castellum: A participant management tool for scientific studies
scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data
HuracanPy: A Python package for reading and analysing cyclone tracks
SDGdetector: an R-based text mining tool for quantifying efforts toward Sustainable Development Goals
universalmotif: An R package for biological motif analysis
PyView: A general purpose tool for analyzing calcium imaging data
Agents.jl: agent-based modeling framework in Julia
SMBLtoODEpy: A software program for converting SBML models into ODE models in Python
GXBeam: A Pure Julia Implementation of Geometrically Exact Beam Theory
MDEntropy: Information-Theoretic Analyses for Molecular Dynamics
FaaSr: R Package for Function-as-a-Service Cloud Computing
BoxKit: A Python library to manage analysis of block-structured simulation datasets
Collaborative Container Modules with Singularity Registry HPC
SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python
startinpy: A Python library for modelling and processing 2.5D triangulated terrains
Clouddrift: a Python package to accelerate the use of Lagrangian data for atmospheric, oceanic, and climate sciences
PyProBE: Python Processing for Battery Experiments
Minterpy: multivariate polynomial interpolation in Python
VCFPy: a Python 3 library with good support for both reading and writing VCF
UWGeodynamics: A teaching and research tool for numerical geodynamic modelling
GaitPy: An Open-Source Python Package for Gait Analysis Using an Accelerometer on the Lower Back
TraitDB: Web application database of phenotypic trait data
onsetsync: An R Package for Onset Synchrony Analysis
geocmeans: An R package for spatial fuzzy c-means
The Population Synthesis Toolkit (PST) Python Library
MParT: Monotone Parameterization Toolkit
CATS: The Climate Aware Task Scheduler
PoUnce: A framework for automatized uncertainty quantification simulations on high-performance clusters
MatchPy: Pattern Matching in Python
pySYD: Automated measurements of global asteroseismic parameters
CITapp - a response time-based Concealed Information Test lie detector web application
Lightshow: a Python package for generating computational x-ray absorption spectroscopy input files
XRTpy: A Hinode-X-Ray Telescope Python Package
Aronnax: An idealised isopycnal ocean model
compareMCMCs: An R package for studying MCMC efficiency
effmass: An effective mass package
PDFIO: PDF Reader Library for native Julia
CAD_to_OpenMC: from CAD design to particle transport
dymos: A Python package for optimal control of multidisciplinary systems
carbonr: An R Package for Estimating Carbon-Equivalent Emissions
ScenTrees.jl: A Julia Package for Generating Scenario Trees and Scenario Lattices for Multistage Stochastic Programming
cottoncandy: scientific python package for easy cloud storage
UltraNest - a robust, general purpose Bayesian inference engine
Application Skeleton: Generating Synthetic Applications for Infrastructure Research
Phonetic Algorithms in R
AeroAcoustics.jl: A Julia package for aeroacoustics
Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker
gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran
G2Aero: A Python package for separable shape tensors
SwiftVISA: Controlling Instrumentation with a Swift-based Implementation of the VISA Communication Protocol
Kinetics Toolkit: An Open-Source Python Package to Facilitate Research in Biomechanics
JASP for Audit: Bayesian Tools for the Auditing Practice
multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials
pengWann: Descriptors of chemical bonding from Wannier functions
gym-electric-motor (GEM): A Python toolbox for the simulation of electric drive systems
Xponge: A Python package to perform pre- and post-processing of molecular simulations
Elephas: Distributed Deep Learning with Keras & Spark
Taguette: open-source qualitative data analysis
High-Dimensional Integrator
helayo: Reconstructing Sanskrit texts from manuscript witnesses
Shapelets: A Python package implementing shapelet functions and their applications
obscura: A modular C++ tool and library for the direct detection of (sub-GeV) dark matter via nuclear and electron recoils
remBoot: An R package for Random Encounter Modelling
Phonemizer: Text to Phones Transcription for Multiple Languages in Python
findSVI: an R package to calculate the Social Vulnerability Index at multiple geographical levels
NADI - Network Analysis and Data Integration with a Domain Specific Language
MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices
SubZero: a discrete element sea ice model that simulates floes as evolving concave polygons
IBCAO_py: A matplotlib library for using the International Bathymetric Chart of the Arctic Ocean with cartopy and matplotlib
minimo: a linked data and metadata storage system for small labs
PySWMM: The Python Interface to Stormwater Management Model (SWMM)
Disimpy: A massively parallel Monte Carlo simulator for generating diffusion-weighted MRI data in Python
pyCLINE: A Python package using the CLINE method for discovery of nullcline structures in oscillatory dynamics
PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python
Synaptus: A Matlab/Octave toolbox for synthetic aperture ultrasound imaging
$\rho\mu$: A Java library of randomization enhancements and other math utilities
Bayesian model reconstruction based on spectral line observations with pomme
antimeridian: A Python package for correcting geometries that cross the 180th meridian
WEPPCLIFF: A command-line tool to process climate inputs for soil loss models
Powering single-cell analyses in the browser with WebAssembly
yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML
areal: An R package for areal weighted interpolation
hoggorm: a python library for explorative multivariate statistics
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering
rucrdtw: Fast time series subsequence search in R
TipToft: detecting plasmids contained in uncorrected long read sequencing data
PulPy: A Python Toolkit for MRI RF and Gradient Pulse Design
wolfexplorer: a tool for visualization and exploration of complex multi-year multi-specimen datasets
CliquePercolation: An R Package for conducting and visualizing results of the clique percolation network community detection algorithm
Recan: Python tool for analysis of recombination events in viral genomes
ASSUME - Agent-based Simulation for Studying and Understanding Market Evolution
piar: Price Index Aggregation in R
NBI: A library for Nystrom Boundary Integral calculations
momepy: Urban Morphology Measuring Toolkit
Foolbox Native: Fast adversarial attacks to benchmark the robustness of machine learning models in PyTorch, TensorFlow, and JAX
ShakeNBreak: Navigating the defect configurational landscape
Samewords: Automatic word disambigation in critical text editions
flory: A Python package for finding coexisting phases in multicomponent mixtures
PyStack3D: A python package for fast image stack correction
TX$^2$: Transformer eXplainability and eXploration
A Julia package for bilevel optimization problems
imager: an R package for image processing based on CImg
scikit-eo: A Python package for Remote Sensing Data Analysis
pyOptSparse: A Python framework for large-scale constrained nonlinear optimization of sparse systems
pyemgpipeline: A Python package for electromyography processing
The Climate Equity Reference Calculator
RISE: An R package for RISE analysis
ampscan: A lightweight Python package for shape analysis of prosthetics and orthotics
ecopath_matlab: A Matlab-based implementation of the Ecopath food web algorithm
QuaCa: an open-source library for fast calculations of steady-state quantum friction
AXITOM: A Python package for reconstruction of axisymmetric tomograms acquired by a conical beam
idinn: A Python Package for Inventory-Dynamics Control with Neural Networks
adaptr: an R package for simulating and comparing adaptive clinical trials
bayes_traj: A Python package for Bayesian trajectory analysis
Pycrostates: a Python library to study EEG microstates
Multivariate Covariance Generalized Linear Models in Python: The mcglm library
RMAVIS v1.0: a Shiny application for the analysis of vegetation survey data and assignment to GB NVC communities
grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions
SeleDiff: A fast and scalable tool for estimating and testing selection differences between populations
Frites: A Python package for functional connectivity analysis and group-level statistics of neurophysiological data
ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces
ollamar: An R package for running large language models
RobotDART: a versatile robot simulator for robotics and machine learning researchers
konfound: An R Sensitivity Analysis Package to Quantify the Robustness of Causal Inferences
The AutoActive Research Environment
insight: A Unified Interface to Access Information from Model Objects in R
Opycleid: A Python package for transformational music theory
OpenDrop: Open-source software for pendant drop tensiometry & contact angle measurements
pySLM2: A full-stack python package for holographic beam shaping
walkr: MCMC Sampling from Non-Negative Convex Polytopes