yusuke1997/dblp-id-title huggingface dataset:
Incorporating Clinical, Chemical and Biological Information for Predicting Small Molecule-microRNA Associations Based on Non-Negative Matrix Factorization
Multi-Objective Particle Swarm Optimization Approach for Cost-Based Feature Selection in Classification
AMAS: Optimizing the Partition and Filtration of Adaptive Seeds to Speed up Read Mapping
A ML Framework for Genetic Sequence Identification Using 2D Electrical Conductance Probability Distributions from Mixed Data Sets
Gene Classification Using Parameter-Free Semi-Supervised Manifold Learning
Synchronization of Fractional Order Neurons in Presence of Noise
Gene Classification Using Codon Usage and Support Vector Machines
Semi-Supervised 3D Medical Image Segmentation Based on Dual-Task Consistent Joint Learning and Task-Level Regularization
Molecular Connectivity Index-Based Data Augmentation for Molecular Property Prediction
Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks
iLncRNAdis-FB: Identify lncRNA-Disease Associations by Fusing Biological Feature Blocks Through Deep Neural Network
A Novel Vision Neural Network for Pan-Cancer Classification by Constructing Somatic Mutation Map With Feature Selection Optimization
A Global and Local Enhanced Residual U-Net for Accurate Retinal Vessel Segmentation
Protein Inference from the Integration of Tandem MS Data and Interactome Networks
Probabilistic Arithmetic Automata and Their Applications
GenoPri'17: International Workshop on Genome Privacy and Security
MSCNE: Predict miRNA-Disease Associations Using Neural Network Based on Multi-Source Biological Information
LLMDTA: Improving Cold-Start Prediction in Drug-Target Affinity With Biological LLM
A Short Proof that Phylogenetic Tree Reconstruction by Maximum Likelihood Is Hard
Structural Target Controllability of Linear Networks
Improving Inter-Helix Contact Prediction With Local 2D Topological Information
Great Lakes Bioinformatics Conference (GLBIO) 2015 Special Section Editorial
Guest Editorial for Special Section on BIOKDD2013
Curvature Analysis of Cardiac Excitation Wavefronts
A Bayesian Framework for Combining Protein and Network Topology Information for Predicting Protein-Protein Interactions
Probiotic-Disease Association Prediction via Cross-Modal Feature Aggregation
Diffusion Alignment Coefficient (DAC): A Novel Similarity Metric for Protein-Protein Interaction Network
SNP Data Science for Classification of Bipolar Disorder I and Bipolar Disorder II
Barapost: Binning of Nucleotide Sequences According to Taxonomic Annotation
Predicting the Prognosis of MCI Patients Using Longitudinal MRI Data
Multivariate Hypergeometric Similarity Measure
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction
Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization
Deep Transfer Learning for Communicable Disease Detection and Recommendation in Edge Networks
Quantifying Significance of MHC II Residues
Image-Based Surface Matching Algorithm Oriented to Structural Biology
HIN-MTDTI: Heterogeneous Information Networks for Multitask Drug-Target Interaction Prediction
AutoMSR: Auto Molecular Structure Representation Learning for Multi-label Metabolic Pathway Prediction
Multiple Sequence Assembly from Reads Alignable to a Common Reference Genome
StLiter: A Novel Algorithm to Iteratively Build the Compacted de Bruijn Graph From Many Complete Genomes
bLARS: An Algorithm to Infer Gene Regulatory Networks
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly
The Quality Preserving Database: A Computational Framework for Encouraging Collaboration, Enhancing Power and Controlling False Discovery
LAD-Net: A Novel Light Weight Model for Early Apple Leaf Pests and Diseases Classification
A Novel Method for Identification of Glutarylation Sites Combining Borderline-SMOTE With Tomek Links Technique in Imbalanced Data
TRGOA: Topological-Aware Residue-Gene Ontology Attention Network for Protein Function Prediction
Community Detection in Protein-Protein Interaction Networks and Applications
An Interpretable Deep Learning Approach for Alzheimer's Disease Diagnosis Using Gene Expression Data
TripletProt: Deep Representation Learning of Proteins Based On Siamese Networks
Machine Learning to Support the Presentation of Complex Pathway Graphs
Natural Language Processing for EHR-Based Computational Phenotyping
Bounded Fuzzy Possibilistic Method Reveals Information about Lung Cancer through Analysis of Metabolomics
An Integrated Framework for Functional Annotation of Protein Structural Domains
SADR: Self-Supervised Graph Learning With Adaptive Denoising for Drug Repositioning
GCNPCA: miRNA-Disease Associations Prediction Algorithm Based on Graph Convolutional Neural Networks
Simultaneous Identification of Duplications and Lateral Gene Transfers
A Hidden Markov Model for Transcriptional Regulation in Single Cells
GeNVoM: Read Mapping Near Non-Volatile Memory
Cancer Subtype Discovery Based on Integrative Model of Multigenomic Data
Designing Pooling Systems for Noisy High-Throughput Protein-Protein Interaction Experiments Using Boolean Compressed Sensing
HiADN: Lightweight Resolution Enhancement of Hi-C Data Using High Information Attention Distillation Network
A Comprehensive Study on Predicting Functional Role of Metagenomes Using Machine Learning Methods
On Axon Interaction and Its Role in Neurological Networks
A Model for Distributed Processing and Analyses of NGS Data under Map-Reduce Paradigm
CircRNA Profiles Analysis of Neuroblastoma for Identification of Drug Targets
Evolution under Reversals: Parsimony and Conservation of Common Intervals
IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads
CGIDLA: Developing the Web Server for CpG Island Related Density and LAUPs (Lineage-Associated Underrepresented Permutations) Study
Guest Editorial for the 17th Asia Pacific Bioinformatics Conference
BRMCF: Binary Relevance and MLSMOTE Based Computational Framework to Predict Drug Functions From Chemical and Biological Properties of Drugs
Exploring Combined Effects of DNA Methylation and Copy Number on Gene Expression With a Two-Stage Approach
In Silico Laboratory Experiments Using Statistical Model Checking: A New Model of the Palytoxin-Induced Pump Channel as Case Study
Genetic Analysis of Coronary Artery Disease Using Tree-Based Automated Machine Learning Informed By Biology-Based Feature Selection
In Silico Search of DNA Drugs Targeting Oncogenes
Finite-Set Model Predictive Control of Melanoma Cancer Treatment Using Signaling Pathway Inhibitor of Cancer Stem Cell
Clustering Single-Cell RNA Sequence Data Using Information Maximized and Noise-Invariant Representations
Semantics and Ambiguity of Stochastic RNA Family Models
An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell RNA-Seq Data Analysis
Dual Triggered Correspondence Topic (DTCT)model for MeSH annotation
Linear-Time Algorithms for the Multiple Gene Duplication Problems
Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification
Parallelized Evolutionary Learning for Detection of Biclusters in Gene Expression Data
Collective Prediction of Disease-Associated miRNAs Based on Transduction Learning
JUPPI: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment
Multi-View Clustering With Graph Learning for scRNA-Seq Data
Generation of Level- k k LGT Networks
Editorial Deep Learning and Graph Embeddings for Network Biology
COPCNVBD: An Integrated Approach for Somatic Copy Number Variation and Breakpoint Detection Using Whole Genome Sequencing Data
Optimization Over a Class of Tree Shape Statistics
Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity
DEGAST3D: Learning Deformable 3D Graph Similarity to Track Plant Cells in Unregistered Time Lapse Images
A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration
Fast Prediction of Protein Methylation Sites Using a Sequence-Based Feature Selection Technique
Editorial-State of the Transaction
CEPZ: A Novel Predictor for Identification of DNase I Hypersensitive Sites
Computational Reconstruction of Transcriptional Relationships from ChIP-Chip Data
A Novel GAER-GMM Framework for Overlapping Protein Complex Detection in Protein Interaction Networks
Detection and Analysis of Electrophoresis Gels Using YOLO
Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies
Algebraic Representation of Asynchronous Multiple-Valued Networks and Its Dynamics
HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies
The Phosphorylation of the Heat Shock Factor as a Modulator for the Heat Shock Response
Algorithmic Mapping and Characterization of the Drug-Induced Phenotypic-Response Space of Parasites Causing Schistosomiasis
MV-H-RKM: A Multiple View-Based Hypergraph Regularized Restricted Kernel Machine for Predicting DNA-Binding Proteins
Protein Function Prediction Using Multilabel Ensemble Classification
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples
scGANCL: Bidirectional Generative Adversarial Network for Imputing scRNA-Seq Data With Contrastive Learning
Personalized Metabolic Analysis of Diseases
Decoding Genetic Variations: Communications-Inspired Haplotype Assembly
Simplified Partial Digest Problem: Enumerative and Dynamic Programming Algorithms
Methods for Identifying SNP Interactions: A Review on Variations of Logic Regression, Random Forest and Bayesian Logistic Regression
Rectifying and Discriminating Hard Negatives for Biomedical Retrieval Question Answering
BRPCA: Bounded Robust Principal Component Analysis to Incorporate Similarity Network for N7-Methylguanosine(m 7 G) Site-Disease Association Prediction
A New Family of Similarity Measures for Scoring Confidence of Protein Interactions Using Gene Ontology
SelfE: Gene Selection via Self-Expression for Single-Cell Data
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution
Switched Latent Force Models for Reverse-Engineering Transcriptional Regulation in Gene Expression Data
Systematic Approach to Computational Designof Gene Regulatory Networks with Information Processing Capabilities
scSPAF: Cell Similarity Purified Adaptive Fusion Network for Single-Cell Multi-Omics Clustering
Computing the Distribution of a Tree Metric
GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets
Fuzzy-Based Multiobjective Multifactor Dimensionality Reduction for Epistasis Analysis
To Improve Prediction of Binding Residues With DNA, RNA, Carbohydrate, and Peptide Via Multi-Task Deep Neural Networks
A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips
Gene Name Disambiguation UsingMulti-Scope Species Detection
Algorithms for Pedigree Comparison
Designing Optimal Experiments to Discriminate Interaction Graph Models
Batch Mode TD(λ) for Controlling Partially Observable Gene Regulatory Networks
DNA Privacy: Analyzing Malicious DNA Sequences Using Deep Neural Networks
De Novo Drug Design by Multi-Objective Path Consistency Learning With Beam A * Search
An Algorithm for Motif-Based Network Design
Species Tree Inference from Gene Splits by Unrooted STAR Methods
Subspace Weighting Co-Clustering of Gene Expression Data
Measuring Cluster Stability in a Large Scale Phylogenetic Analysis of Functional Genes in Metagenomes Using pplacer
How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets
Computing Minimum Reaction Modifications in a Boolean Metabolic Network
Protein Family Classification from Scratch: A CNN Based Deep Learning Approach
scCMP: A Deep Learning Method for Identifying Clonal Mutational Profiles From Single-Cell Genomic Data
Branching Out to Speciation in a Model of Fractionation: The Malvaceae
Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation
GLProbs: Aligning Multiple Sequences Adaptively
Analyzing Effect of Multi-Modality in Predicting Protein-Protein Interactions
Prediction of Malignant Breast Cancer Cases Using Ensemble Machine Learning: A Case Study of Pesticides Prone Area
Guest Editorial Introduction to the Special Section on Bioinformatics Research and Applications
Incorporating the Coevolving Information of Substrates in Predicting HIV-1 Protease Cleavage Sites
A Comprehensive Survey of Deep Learning Techniques in Protein Function Prediction
Synchronization of Boolean Networks with Different Update Schemes
The Undirected Incomplete Perfect Phylogeny Problem
Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes
Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm
Inference Attacks and Controls on Genotypes and Phenotypes for Individual Genomic Data
A Deep Learning Framework for Chromatin Loop De Novo Prediction With Enhanced Feature Extraction
Utilizing Deep Learning and Genome Wide Association Studies for Epistatic-Driven Preterm Birth Classification in African-American Women
Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression
Novel Algorithm for Improved Protein Classification Using Graph Similarity
Unrooted Tree Reconciliation: A Unified Approach
gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal
miRTRS: A Recommendation Algorithm for Predicting miRNA Targets
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions
An Edge-Cloud-Aided Private High-Order Fuzzy C-Means Clustering Algorithm in Smart Healthcare
CircGO: Predicting circRNA Functions Through Self-Supervised Learning of Heterogeneous Networks
Elucidating Genome-Wide Protein-RNA Interactions Using Differential Evolution
Capsule Network for Predicting RNA-Protein Binding Preferences Using Hybrid Feature
PARCEL: Physics-Based Unsupervised Contrastive Representation Learning for Multi-Coil MR Imaging
Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme
Taming Asynchrony for Attractor Detection in Large Boolean Networks
Multitype Perception Method for Drug-Target Interaction Prediction
LMGATCDA: Graph Neural Network With Labeling Trick for Predicting circRNA-Disease Associations
Generative Biomedical Event Extraction With Constrained Decoding Strategy
Complex Network Measures in Autism Spectrum Disorders
Estimation of Discriminative Multimodal Brain Network Connectivity Using Message-Passing-Based Nonlinear Network Fusion
Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles
Maximizing Protein Translation Rate in the Ribosome Flow Model: The Homogeneous Case
Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data
An Overview of BioCreative II.5
SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures
Guest Editorial Special Issue on Multi-Modal Biomedical Computing-Deep Transfer Learning
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data
A New Graph Autoencoder-Based Multi-Level Kernel Subspace Fusion Framework for Single-Cell Type Identification
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data
Stage-Dependent Gene Expression Profiling in Colorectal Cancer
Protein Structure Classification Based on Conserved Hydrophobic Residues
Signal Quality Measurements for cDNA Microarray Data
Dynamic Network Construction for Identifying Early Warning Signals Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery for Gastric Cancer
Authentication of Medicines Using Nuclear Quadrupole Resonance Spectroscopy
A Latent Gaussian Copula Model for Mixed Data Analysis in Brain Imaging Genetics
Designing a New Multi-Epitope Pertussis Vaccine with Highly Population Coverage Based on a Novel Sequence and Structural Filtration Algorithm
Editorial Deep Learning-Empowered Big Data Analytics in Biomedical Applications and Digital Healthcare
On Parameter Synthesis by Parallel Model Checking
Decomposition of Flux Distributions into Metabolic Pathways
A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics
MKMGCN-DDI: Predicting Drug-Drug Interactions via Magnetic Graph Convolutional Network With Multiple Kernels
A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem
Data-Driven Robust Control for a Closed-Loop Artificial Pancreas
Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical Representation Learning
A Scalable Embedding Based Neural Network Method for Discovering Knowledge From Biomedical Literature
Predicting Antimicrobial Peptides by Using Increment of Diversity with Quadratic Discriminant Analysis Method
Design-for-Trust Techniques for Digital Microfluidic Biochip Layout With Error Control Mechanism⋆*A preliminary version of this paper appeared in the Proc. of IEEE Region 10 Symposium (TENSYMP), 2019 [1]
WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites
Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are More Efficient than Sampling and Marginalization by Enumeration
Development of Two-Stage SVM-RFE Gene Selection Strategy for Microarray Expression Data Analysis
Maximum Parsimony for Tree Mixtures
Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral Considerations
Final, Five-Year End, Editorial
FaStaNMF: A Fast and Stable Non-Negative Matrix Factorization for Gene Expression
Combining Zhegalkin Polynomials and SAT Solving for Context-Specific Boolean Modeling of Biological Systems
Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling
An Improved Conditional Wasserstein GAN With Gradient Penalty for Gene Expression Profiling Data Augmentation Based on Data Segmentation and Depth Feature Constraint
Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model
Lesion Segmentation in Ultrasound Using Semi-Pixel-Wise Cycle Generative Adversarial Nets
Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles
HiPHD: Hierarchical Classification for Protein Remote Homology Detection by Incorporating Protein Sequential and Structural Information
Integrating Evolutionary and Structural Properties for Protein Interaction Site Prediction Using Graph and Temporal Convolutions
ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference
MEDA Based Biochips: Detection, Prevention and Rectification Techniques for Cyberphysical Attacks
An Optimized LMMSE Based Method for 3D MRI Denoising
From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks
LDA-LNSUBRW: lncRNA-Disease Association Prediction Based on Linear Neighborhood Similarity and Unbalanced bi-Random Walk
Predicting CRISPR Cas9 Off-Target Activities With a Two-Stage Deep Learning Framework
Local R-Symmetry Co-Occurrence: Characterising Leaf Image Patterns for Identifying Cultivars
SIG: Graph-Based Cancer Subtype Stratification With Gene Mutation Structural Information
Effect of Atomic Size and Stereochemistry of Halogenated Hydantoin Derivatives on Main Protease Inhibition Activities of SARS-CoV-2: Rationalization Through Computational Studies
A New Measure of Classifier Performance for Gene Expression Data
Deep Transfer Learning-Based Multi-Object Detection for Plant Stomata Phenotypic Traits Intelligent Recognition
Symmetry Compression Method for Discovering Network Motifs
FRESCO: Referential Compression of Highly Similar Sequences
Graph Convolutional Auto-Encoders for Predicting Novel lncRNA-Disease Associations
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems
Constrained Pseudo-Time Ordering for Clinical Transcriptomics Data
Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric
Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification
A New Weighted Imputed Neighborhood-Regularized Tri-Factorization One-Class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors
A Clinical Dataset and Various Baselines for Chromosome Instance Segmentation
A Comparative Assessment of Ranking Accuracies of Conventional and Machine-Learning-Based Scoring Functions for Protein-Ligand Binding Affinity Prediction
A Spatial-Temporal Method to Detect Global Influenza Epidemics Using Heterogeneous Data Collected from the Internet
Network Community Detection Based on the Physarum-Inspired Computational Framework
Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes
Guest Editors Introduction to the Special Section on ISBRA 2014
Similarity Measures for Comparing Biclusterings
Classification of State Trajectories in Gene Regulatory Networks
Diffusing on Two Levels and Optimizing for Multiple Properties: A Novel Approach to Generating Molecules With Desirable Properties
MedOptNet: Meta-Learning Framework for Few-Shot Medical Image Classification
Identification of Phase Separating Proteins With Distributed Reduced Alphabet Representations of Sequences
Consensus Genetic Maps as Median Orders from Inconsistent Sources
On Sharing Intentions, and Personal and Interdependent Privacy Considerations for Genetic Data: A Vignette Study
Reinforced Computer-Aided Framework for Diagnosing Thyroid Cancer
Formator: Predicting Lysine Formylation Sites Based on the Most Distant Undersampling and Safe-Level Synthetic Minority Oversampling
Hyb_SEnc: An Antituberculosis Peptide Predictor Based on a Hybrid Feature Vector and Stacked Ensemble Learning
Target Control of Asynchronous Boolean Networks
Pregnancy Associated Breast Cancer Gene Expressions : New Insights on Their Regulation Based on Rare Correlated Patterns
Protein Complexes Identification with Family-Wise Error Rate Control
MGRFE: Multilayer Recursive Feature Elimination Based on an Embedded Genetic Algorithm for Cancer Classification
Model Composition for Macromolecular Regulatory Networks
Group Sparse Joint Non-Negative Matrix Factorization on Orthogonal Subspace for Multi-Modal Imaging Genetics Data Analysis
Guest Editorial: Special Section on Biological Data Mining and Its Applications in Healthcare
Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions
Essential Latent Knowledge for Protein-Protein Interactions: Analysis by an Unsupervised Learning Approach
Prediction of Transcription Factor Binding Sites With an Attention Augmented Convolutional Neural Network
Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks
NMTF-DTI: A Nonnegative Matrix Tri-factorization Approach With Multiple Kernel Fusion for Drug-Target Interaction Prediction
An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach
An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images
Causal Gene Identification Using Non-Linear Regression-Based Independence Tests
Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota
Prediction of Potential miRNA-Disease Associations Based on a Masked Graph Autoencoder
New Distance-Based approach for Genome-Wide Association Studies
Constructing a Gene Team Treein Almost $O$$(n\; {\rm lg}\; n)$ Time
DinoKnot: Duplex Interaction of Nucleic Acids With PseudoKnots
The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost
A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures