yusuke1997/dblp-id-title huggingface dataset:
gollum: An intuitive programmatic and visual interface for precomputed synthetic spectral model grids
The ARC-OPT Library for Whole-Body Control of Robotic Systems
HyperCoast: A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments
PERFORM: A Python package for developing reduced-order models for reacting fluid flows
Trash AI: A Web GUI for Serverless Computer Vision Analysis of Images of Trash
pdfsearch: Search Tools for PDF Files
GridapSolvers.jl: Scalable multiphysics finite element solvers in Julia
logKDE: log-transformed kernel density estimation
Kamodo: A functional API for space weather models and data
Grama: A Grammar of Model Analysis
MyPTV: A Python Package for 3D Particle Tracking
WAVI.jl: Ice Sheet Modelling in Julia
lenstronomy II: A gravitational lensing software ecosystem
GaussianRandomFields.jl: A Julia package to generate and sample from Gaussian random fields
HOODESolver.jl: A Julia package for highly oscillatory problems
bmgarch: An R-Package for Bayesian Multivariate GARCH models
R3D2: Relativistic Reactive Riemann problem solver for Deflagrations and Detonations
FitSNAP: Atomistic machine learning with LAMMPS
SPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functions
funkyheatmap: Visualising data frames with mixed data types
medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R
FlowSieve: A Coarse-Graining Utility for Geophysical Flows on the Sphere
MarSwitching.jl: A Julia package for Markov switching dynamic models
Cacatoo: building, exploring, and sharing spatially structured models of biological systems
Predihood: an open-source tool for predicting neighbourhoods' information
ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes
BlenderProc2: A Procedural Pipeline for Photorealistic Rendering
DynamicOED.jl: A Julia package for solving optimum experimental design problems
modeLLtest: An R Package for Unbiased Model Comparison using Cross Validation
Rasusa: Randomly subsample sequencing reads to a specified coverage
pypromice: A Python package for processing automated weather station data
bistablehistory: an R package for history-dependent analysis of perceptual time series
rfsed: Receiver function analysis and dealing with sediment effects
mst_clustering: Clustering via Euclidean Minimum Spanning Trees
BART-Survival: A Bayesian machine learning approach to survival analyses in Python
TDLM: An R package for a systematic comparison of trip distribution laws and models
PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades
Effective-Quadratures (EQ): Polynomials for Computational Engineering Studies
Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration
PiSCAT: A Python Package for Interferometric Scattering Microscopy
coronagraph: Telescope Noise Modeling for Exoplanets in Python
SurvivalVolume: interactive volume threshold survival graphs
PWSpy: A Python library dedicated to the analysis of Partial Wave Spectroscopic Microscopy data
polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories
fastSF: A parallel code for computing the structure functions of turbulence
PySPI: A python analysis framework for INTEGRAL/SPI
PsychoPhysioPipeline: A Processing and Analysis Pipeline for Psychophysiological Research
X-PSI: A Python package for neutron star X-ray pulse simulation and inference
Suppdata: Downloading Supplementary Data from Published Manuscripts
resampy: efficient sample rate conversion in Python
proteusPy: A Python Package for Protein Structure and Disulfide Bond Modeling and Analysis
Calliope: a multi-scale energy systems modelling framework
GAMA: Genetic Automated Machine learning Assistant
MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language
ExoTiC-ISM: A Python package for marginalised exoplanet transit parameters across a grid of systematic instrument models
cosasi: Graph Diffusion Source Inference in Python
TopSearch: a Python package for topographical analysis of machine learning models and physical systems
SAILS: Spectral Analysis In Linear Systems
vcftoolz: a Python package for comparing and evaluating Variant Call Format files
SuchTree: Fast, thread-safe computations with phylogenetic trees
occupationMeasurement: A Comprehensive Toolbox for Interactive Occupation Coding in Surveys
jaxKAN: A unified JAX framework for Kolmogorov-Arnold Networks
BCImat: a Matlab-based framework for Intracortical Brain-Computer Interfaces and their simulation with an artificial spiking neural network
itrm: Interactive Terminal Utilities
IndividualDisplacements.jl: a Julia package to simulate and study particle displacements within the climate system
APAV: An Open-Source Python Package for Mass Spectrum Analysis in Atom Probe Tomography
Pippin: A pipeline for supernova cosmology
CM++ - A Meta-method for Well-Connected Community Detection
Galore: Broadening and weighting for simulation of photoelectron spectroscopy
Deident: An R package for data anonymization
SIAL: A simple image analysis library for wet-lab scientists
BCAWT: Automated tool for codon usage bias analysis for molecular evolution
ALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysis
ParquetDB: A Lightweight Python Parquet-Based Database
Stingray 2: A fast and modern Python library for spectral timing
Fortuna.jl: Structural and System Reliability Analysis in Julia
BellDiagonalQudits: A package for entanglement analyses of mixed maximally entangled qudits
DYCO: A Python package to dynamically detect and compensate for time lags in ecosystem time series
Speakerbox: Few-Shot Learning for Speaker Identification with Transformers
pySRURGS - a python package for symbolic regression by uniform random global search
PyQMRI: An accelerated Python based Quantitative MRI toolbox
PlanktonIndividuals.jl: A GPU supported individual-based phytoplankton life cycle model
py_neuromodulation: Signal processing and decoding for neural electrophysiological recordings
ssdtools: An R package to fit Species Sensitivity Distributions
MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
buildH: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters
DeepRiver: A Deep Learning Library for Data Streams
ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis
cerf: A Python package to evaluate the feasibility and costs of power plant siting for alternative futures
LINFA: a Python library for variational inference with normalizing flow and annealing
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models
JetNet: A Python package for accessing open datasets and benchmarking machine learning methods in high energy physics
GEM: A Python package for graph embedding methods
rdbsp: An Open Source Rock Dynamic Behavior Simulation Program
Local clustering
SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations
VBLinLogit: Variational Bayesian linear and logistic regression
GIBBON: The Geometry and Image-Based Bioengineering add-On
ESAT: Environmental Source Apportionment Toolkit Python package
GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings
x11docker: Run GUI applications in Docker containers
Reel1.0 - A visualization tool for evaluating powder diffraction refinements
ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes
nctoolkit: A Python package for netCDF analysis and post-processing
Pingouin: statistics in Python
ECabc: A feature tuning program focused on Artificial Neural Network hyperparameters
cmstatr: An R Package for Statistical Analysis of Composite Material Data
cppTPSA/pyTPSA: a C++/Python package for truncated power series algebra
pytorch-widedeep: A flexible package for multimodal deep learning
presize: An R-package for precision-based sample size calculation in clinical research
FNFT: A Software Library for Computing Nonlinear Fourier Transforms
modelDown: automated website generator with interpretable documentation for predictive machine learning models
vSmartMOM.jl: an Open-Source Julia Package for Atmospheric Radiative Transfer and Remote Sensing Tools
verdata: An R package for analyzing data from the Truth Commission in Colombia
DetecTree: Tree detection from aerial imagery in Python
LiGuard: Interactively and Rapidly Create Point-Cloud and Image Processing Pipelines
idvf: Iterative Inversion of Deformation Vector Field with Adaptive Bi-residual Feedback Control
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes
'ospgrillage': A bridge deck grillage analysis preprocessor for 'OpenSeesPy'
salabim: discrete event simulation and animation in Python
learningCurve: An implementation of Crawford's and Wright's learning curve production functions
Phasik: a Python package to identify system states in partially temporal networks
GFF3toEMBL: Preparing annotated assemblies for submission to EMBL
pyveg: A Python package for analysing the time evolution of patterned vegetation using Google Earth Engine
mpnum: A matrix product representation library for Python
PyTeNet: A concise Python implementation of quantum tensor network algorithms
GeophysicalFlows.jl: Solvers for geophysical fluid dynamics problems in periodic domains on CPUs & GPUs
datafold: data-driven models for point clouds and time series on manifolds
Gramm: grammar of graphics plotting in Matlab
rgugik: Search and Retrieve Spatial Data from the Polish Head Office of Geodesy and Cartography in R
Snk: A Snakemake CLI and Workflow Management System
fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms
MCALF: Multi-Component Atmospheric Line Fitting
MPTRAC: A high-performance Lagrangian transport model for atmospheric air parcel dispersion
OrbDot: A Python package for studying the secular evolution of exoplanet orbits
WordTokenizers.jl: Basic tools for tokenizing natural language in Julia
Scyland3D: Processing 3D landmarks
MITgcm.jl: a Julia Interface to the MITgcm
bwsample: Processing Best-Worst Scaling data
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data
ytree: A Python package for analyzing merger trees
forestatrisk: a Python package for modelling and forecasting deforestation in the tropics
BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS
Sync Toolbox: A Python Package for Efficient, Robust, and Accurate Music Synchronization
chessboard: An R package for creating network connections based on chess moves
Masks2Metrics (M2M): A Matlab Toolbox for Gold Standard Morphometrics
Potnia: A Python library for the conversion of transliterated ancient texts to Unicode
Manopt.jl: Optimization on Manifolds in Julia
DeBEIR: A Python Package for Dense Bi-Encoder Information Retrieval
eights: BS 8888: 2011 first angle projection drawings from FreeCAD 3D model
MDCraft: A Python assistant for performing and analyzing molecular dynamics simulations of soft matter systems
kerasR: R Interface to the Keras Deep Learning Library
bifacial_radiance: a python package for modeling bifacial solar photovoltaic systems
greeks: Sensitivities of Prices of Financial Options and Implied Volatilities
'medoutcon': Nonparametric efficient causal mediation analysis with machine learning in 'R'
CoperniFUS: A flexible Python-based GUI for stereotaxic Focused UltraSound (FUS) experiment planning
ddop: A python package for data-driven operations management
BayesPostEst: An R Package to Generate Postestimation Quantities for Bayesian MCMC Estimation
skijumpdesign: A Ski Jump Design Tool for Specified Equivalent Fall Height
Thresholdmann: A Web tool for interactively creating adaptive thresholds to segment MRI data
seg1d: A Python package for Automated segmentation of one-dimensional (1D) data
Chaste: Cancer, Heart and Soft Tissue Environment
WhaleConnect: A General-Purpose, Cross-Platform Network Communication Application
FuzzyClass: A family of Fuzzy and Non-Fuzzy probabilistic-based classifiers
fqfa: A pure Python package for genomic sequence files
ndsplines: A Python Library for Tensor-Product B-Splines of Arbitrary Dimension
polyCub: An R package for Integration over Polygons
Kanapy: A Python package for generating complex synthetic polycrystalline microstructures
RandomForestsGLS: An R package for Random Forests for dependent data
mcMST: A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
OpenPelt: Python Framework for Thermoelectric Temperature Control System Development
DeepBench: A simulation package for physical benchmarking data
AMIRIS: Agent-based Market model for the Investigation of Renewable and Integrated energy Systems
morphMan: Automated manipulation of vascular geometries
A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments
Correlation: An Analysis Tool for Liquids and for Amorphous Solids
registr 2.0: Incomplete Curve Registration for Exponential Family Functional Data
fib-tf: A TensorFlow-based Cardiac Electrophysiology Simulator
pyrolite: Python for geochemistry
BlackBIRDS: Black-Box Inference foR Differentiable Simulators
Altair: Interactive Statistical Visualizations for Python
matbench-genmetrics: A Python library for benchmarking crystal structure generative models using time-based splits of Materials Project structures
MaterialNet: A web-based graph explorer for materials science data
dyPolyChord: dynamic nested sampling with PolyChord
hdt-rs: A Rust library for the Header Dictionary Triples binary RDF compression format
PyBWE: Python tools for Bandwidth Extrapolation of planetary radar signals
dsBinVal: Conducting distributed ROC analysis using DataSHIELD
Quail: A Python toolbox for analyzing and plotting free recall data
riskclustr: Functions to Study Etiologic Heterogeneity
Mold: a LAMMPS package to compute interfacial free energies and nucleation rates
hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers
seesus: a social, environmental, and economic sustainability classifier for Python
DNAtools: Tools for Analysing Forensic Genetic DNA Data
bittrex: An R client for the Bittrex Crypto-Currency Exchange
CoastSeg: an accessible and extendable hub for satellite-derived-shoreline (SDS) detection and mapping
Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes
bonsai_ipcc - a Python package for the calculation of national greenhouse gas inventories
sbp-env: A Python Package for Sampling-based Motion Planner and Samplers
NiTransforms: A Python tool to read, represent, manipulate, and apply dimensional spatial transforms
Hyperelastics.jl: A Julia package for hyperelastic material modelling with a large collection of models
Zoobot: Adaptable Deep Learning Models for Galaxy Morphology
HyRiver: Hydroclimate Data Retriever
lintegrate: A C/Python numerical integration library for working in log-space
libsoni: A Python Toolbox for Sonifying Music Annotations and Feature Representations
Implicit measures with reproducible results: The implicitMeasures package
libqcpp: A C++14 sequence quality control library
ComFiT: a Python library for computational field theory with topological defects
kdensity: An R package for kernel density estimation with parametric starts and asymmetric kernels
Anime: Atmospheric and Instrument Models in the Measurement Equation
scida: scalable analysis for scientific big data
unyt: Handle, manipulate, and convert data with units in Python
piglot: an Open-source Package for Derivative-free Optimisation of Numerical Responses
SleepPy: A python package for sleep analysis from accelerometer data
mpi4jax: Zero-copy MPI communication of JAX arrays
GBOML: Graph-Based Optimization Modeling Language
UglyMol: a WebGL macromolecular viewer focused on the electron density
SOUPy: Stochastic PDE-constrained optimization under high-dimensional uncertainty in Python
TESPy: Thermal Engineering Systems in Python
imea: A Python package for extracting 2D and 3D shape measurements from images
excluder: An R package that checks for exclusion criteria in online data
tsfeaturex: An R Package for Automating Time Series Feature Extraction
IGRINS RV: A Python Package for Precision Radial Velocities with Near-Infrared Spectra
funsies: A minimalist, distributed and dynamic workflow engine
hankel: A Python library for performing simple and accurate Hankel transformations
EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations
HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images
Chitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulations
simpleCache: R caching for reproducible, distributed, large-scale projects
Basix: a runtime finite element basis evaluation library
PyNeuroTrace - Python code for neural activity time series
The MCAPL Framework including the Agent Infrastructure Layer an Agent Java Pathfinder
Enlsip.jl: A Julia optimization package to solve constrained nonlinear least-squares problems
stabm: Stability Measures for Feature Selection
HOOMD-TF: GPU-Accelerated, Online Machine Learning in the HOOMD-blue Molecular Dynamics Engine
CNATool - Complex Network Analysis Tool
AdditiveFOAM: A Continuum Multiphysics Code for Additive Manufacturing
modisfast: An R package for fast and efficient access to MODIS, VIIRS and GPM Earth Observation data
impedance.py: A Python package for electrochemical impedance analysis
EspressoDB: A scientific database for managing high-performance computing workflows
adaptest: Data-Adaptive Statistics for High-Dimensional Testing in R
A News Verification Browser for the Detection of Clickbait, Satire, and Falsified News
Nextclade: clade assignment, mutation calling and quality control for viral genomes
mbir: Magnitude-Based Inferences
HRnV-Calc: A Software for Heart Rate n-Variability and Heart Rate Variability Analysis
Eureka!: An End-to-End Pipeline for JWST Time-Series Observations
Sinaps: A Python library to simulate voltage dynamics and ionic electrodiffusion in neurons
smol: A Python package for cluster expansions and beyond
SSMSE: An R package for Management Strategy Evaluation with Stock Synthesis Operating Models
treemaker: A Python tool for constructing a Newick formatted tree from a set of classifications
gaussplotR: Fit, Predict and Plot 2D-Gaussians in R
The Experiment Factory: Reproducible Experiment Containers
SAMBA: A Trainable Segmentation Web-App with Smart Labelling
healpy: equal area pixelization and spherical harmonics transforms for data on the sphere in Python
Intracranial Electrode Location and Analysis in MNE-Python
easyunfold: A Python package for unfolding electronic band structures
planetMagFields: A Python package for analyzing and plotting planetary magnetic field data
AMAT: A Python package for rapid conceptual design of aerocapture and atmospheric Entry, Descent, and Landing (EDL) missions in a Jupyter environment
bikedata
'FielDHub': A Shiny App for Design of Experiments in Life Sciences
pfsspy: A Python package for potential field source surface modelling
Instrbuilder: A Python package for electrical instrument control
h5preserve: Thin wrapper around h5py, inspired by camel
HeuDiConv - flexible DICOM conversion into structured directory layouts
PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data
CCA-Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic CCA methods in a scikit-learn style framework
dantro: a Python package for handling, transforming, and visualizing hierarchically structured data
GiNaCDE: the high-performance F-expansion and First Integral Methods with C++ library for solving Nonlinear Differential Equations
Segmenteverygrain: A Python module for segmentation of grains in images
TASOPT.jl: A Julia package for conceptual commercial transport aircraft design
Brightway: An open source framework for Life Cycle Assessment
JeFaPaTo - A joint toolbox for blinking analysis and facial features extraction
ACEInhibPKPD: An open-source MATLAB app for a pharmacokinetic/pharmacodynamic model of ACE inhibition
libRL: A Python library for the characterization of microwave absorption
DE-Sim: an object-oriented, discrete-event simulation tool for data-intensive modeling of complex systems in Python
mpl-interactions: A Python Package for Interactive Matplotlib Figures
SWMManywhere: Synthesise Urban Drainage Network Models Anywhere in the World
timeseriesflattener: A Python package for summarizing features from (medical) time series
HiPart: Hierarchical Divisive Clustering Toolbox
PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images
hopit: An R Package for Analysis of Reporting Behavior Using Generalized Ordered Probit Models
Multitaper.jl: A Julia package for frequency domain analysis of time series
EFAtools: An R package with fast and flexible implementations of exploratory factor analysis tools
chronovise: Measurement-Based Probabilistic Timing Analysis framework
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database
G'MIC: An Open-Source Self-Extending Framework for Image Processing
MetaWards: A flexible metapopulation framework for modelling disease spread
Graph Transliterator: A graph-based transliteration tool
YoungTab
Grafoscopio: A moldable tool for literate computing and reproducible research
ticktack: A Python package for carbon box modelling
ExoTETHyS: Tools for Exoplanetary Transits around host stars
CausalTables.jl: Simulating and storing data for statistical causal inference in Julia
Vector: JIT-compilable mathematical manipulations of ragged Lorentz vectors
OpenTerrace: A fast, flexible and extendable Python framework for thermal energy storage packed bed simulations
Devicely: A Python package for reading, timeshifting and writing sensor data
Cine: Line excitation by infrared fluorescence in cometary atmospheres
DCISolver.jl: A Julia Solver for Nonlinear Optimization using Dynamic Control of Infeasibility
PropPy - Correlated random walk propagation of cosmic rays in magnetic turbulence
PyCVI: A Python package for internal Cluster Validity Indices, compatible with time-series data
survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines
helios: An R package to process heating and cooling degrees for GCAM
ComplexRegions.jl: A Julia package for regions in the complex plane
SegregatedVMSSolver.jl: Linearized and Segregated Stabilized Solver for Large Eddy Simulation in Julia
AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library
easyaccess: Enhanced SQL command line interpreter for astronomical surveys
MARTINI: Mock Array Radio Telescope Interferometry of the Neutral ISM
CEGO: C++11 Evolutionary Global Optimization
Lithology: A Landlab submodule for spatially variable rock properties
Bedparse: feature extraction from BED files
PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
'Spectrum': Spectral Analysis in Python
cogsworth: A Gala of COSMIC proportions combining binary stellar evolution and galactic dynamics
shmem4py: OpenSHMEM for Python
solids4foam: A toolbox for performing solid mechanics and fluid-solid interaction simulations in OpenFOAM
PyBIDS: Python tools for BIDS datasets
MultiVae: A Python package for Multimodal Variational Autoencoders on Partial Datasets
GRFolres: A code for modified gravity simulations in strong gravity
sweater: Speedy Word Embedding Association Test and Extras Using R
see: An R Package for Visualizing Statistical Models
SSAPy - Space Situational Awareness for Python
GLUE Code: A framework handling communication and interfaces between scales
Project RACCOON: Automated construction of PDB files for polymers and polymer peptide conjugates
MetaCast: A package for broadCASTing epidemiological and ecological models over META-populations
UM-Bridge: Uncertainty quantification and modeling bridge
TTLocVis: A Twitter Topic Location Visualization Package