yusuke1997/dblp-id-title huggingface dataset:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
Sequence , a BioJS component for visualising sequences
Numerical model for enhancing stimulated Brillouin scattering in optical microfibers
A compendium of monocyte transcriptome datasets to foster biomedical knowledge discovery
Visualizing and quantifying movement from pre-recorded videos: The spectral time-lapse (STL) algorithm
A multi-disciplinary perspective on emergent and future innovations in peer review
Network-based Observability and Controllability Analysis of Dynamical Systems: the NOCAD toolbox
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data
haploR: an R-package for querying web-based annotation tools
Rampant software errors undermine scientific results
A multi-spectral myelin annotation tool for machine learning based myelin quantification
Expanding the Chemical Information Science gateway
On the evaluation of research software: the CDUR procedure
Image analysis method for heterogeneity and porosity characterization of biomimetic hydrogels
Perceptions and use of technology in older people with ophthalmic conditions
Spatio-temporal deep learning model for distortion classification in laparoscopic video
A brief review of simulated Kalman Filter Algorithm - variants and applications
Implementation and assessment of an end-to-end Open Science & Data Collaborations program
A nested randomised controlled trial of a newsletter and Post-it® note did not increase postal questionnaire response rates in a falls prevention trial
Integrating augmented reality technology in education: vector personal computer augmented reality
TreeSummarizedExperiment: a S4 class for data with hierarchical structure
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data
dot-app: a Graphviz-Cytoscape conversion plug-in
Simulation and visualization of multiple KEGG pathways using BioNSi
Driving style recognition using machine learning and smartphones
BioJS InterMine List Analysis : A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints
Neural matrix factorization++ based recommendation system
Study of bypassing Microsoft Windows Security using the MITRE CALDERA Framework
Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps
shinySISPA: A web tool for defining sample groups using gene sets from multiple-omics data
Effectiveness of contact tracing apps for SARS-CoV-2: an updated systematic review
drawProteins: a Bioconductor/R package for reproducible and programmatic generation of protein schematics
COVID-19 countermeasures, Major League Baseball, and the home field advantage: Simulating the 2020 season using logit regression and a neural network
Encoding Retina Image to Words using Ensemble of Vision Transformers for Diabetic Retinopathy Grading
Knowledge creation in IT projects to accelerate digital innovation: two decade systematic literature review
Towards achieving lightweight intrusion detection systems in Internet of Things, the role of incremental machine learning: A systematic literature review
Crambled: A Shiny application to enable intuitive resolution of conflicting cellularity estimates
Using bio.tools to generate and annotate workbench tool descriptions
A studyforrest extension, an annotation of spoken language in the German dubbed movie "Forrest Gump" and its audio-description
Characterization of known protein complexes using k-connectivity and other topological measures
Biology and conservation of elasmobranchs: an introduction to the collection
Relative Abundance of Transcripts ( RATs ): Identifying differential isoform abundance from RNA-seq
The varying openness of digital open science tools
Anomalous energy consumption detection using a Naïve Bayes approach
KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications
ANGDelMut - a web-based tool for predicting and analyzing functional loss mechanisms of deleterious angiogenin mutations causing amyotrophic lateral sclerosis
Experimental study and modeling the tensile strength of 3D-printed aluminium polylactic acid (PLA) parts using artificial neural networks
The evolution of knowledge in sericultural research as observed through a science mapping approach
NovoGraph: Genome graph construction from multiple long-read de novo assemblies
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python
Digital methodology to implement the ECOUTER engagement process
Blinding in trials of interventional procedures is possible and worthwhile
Compound data sets and software tools for chemoinformatics and medicinal chemistry applications: update and data transfer
A Robust image watermarking for copyright protection using Multiresolution Walsh-Hadamard transform and Schur using Differential evolution
Predicting survival time for metastatic castration resistant prostate cancer: An iterative imputation approach
The rise and fall of machine learning methods in biomedical research
An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action
Combining low sampling frequency smartphone sensors and video for a Wearable Mobility Monitoring System
Applying machine learning to automated segmentation of head and neck tumour volumes and organs at risk on radiotherapy planning CT and MRI scans
Applying machine learning EEG signal classification to emotion‑related brain anticipatory activity
Reconciling Techno-simplicity and Eco-complexity for future food security
On genomics, kin, and privacy
Guidance for ensuring fair and ethical broad consent for future use. A scoping review protocol
Case Report: "ADHD Trainer": the mobile application that enhances cognitive skills in ADHD patients
IncucyteDRC : An R package for the dose response analysis of live cell imaging data
GAC: Gene Associations with Clinical, a web based application
Identifying spatial priorities for protecting ecosystem services
Approaches for containerized scientific workflows in cloud environments with applications in life science
Longitudinal variations of brain functional connectivity: A case report study based on a mouse model of epilepsy
Fast P(RMNE): Fast forensic DNA probability of random man not excluded calculation
Modeling document labels using Latent Dirichlet allocation for archived documents in Integrated Quality Assurance System (IQAS)
Trialling the Use of Google Apps Together with Online Marking to Enhance Collaborative Learning and Provide Effective Feedback
Evidence-based Clinical Decision Support Systems for the prediction and detection of three disease states in critical care: A systematic literature review
Protocol for a factorial randomised controlled trial, embedded within WHiTE 8 COPAL, of an Enhanced Trainee Principal Investigator Package and Additional Digital Nudge to increase recruitment rates
Digital signature schemes with strong existential unforgeability
Follow-up: Prospective compound design using the 'SAR Matrix' method and matrix-derived conditional probabilities of activity
PRN: a preprint service for catalyzing R-fMRI and neuroscience related studies
A bibliometric analysis of the global research on sofosbuvir
COVID-19 and digital transformation: developing an open experimental testbed for sustainable and innovative environments using Fuzzy Cognitive Maps
Disambiguate: An open-source application for disambiguating two species in next generation sequencing data from grafted samples
The relationship between altmetric score with received citations in Iranian pediatrics articles
PEGS: An efficient tool for gene set enrichment within defined sets of genomic intervals
o2geosocial : Reconstructing who-infected-whom from routinely collected surveillance data
Health care and social media: What patients really understand
Comparison of different machine learning methods and dimensionality reduction for classification astrocytoma and glioblastoma tissues by mass spectra
Semantics for interoperability of distributed data and models: Foundations for better-connected information
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Readable workflows need simple data
Unintended consequences of machine learning in medicine?
VISIT-TS version 2: A multimedia tool for population studies on tic disorders
Field programmable gate array implementation of an intelligent soft calibration technique for linear variable differential transformers
EpiCollect+: linking smartphones to web applications for complex data collection projects
Software Carpentry: lessons learned
Using machine learning techniques to develop risk prediction models to predict graft failure following kidney transplantation: protocol for a retrospective cohort study
Validation of a Thai artificial chatmate designed for cheering up the elderly during the COVID-19 pandemic
Proposal of a novel Artificial Intelligence Distribution Service platform for healthcare
AGA: Interactive pipeline for reproducible genomics analyses
A new Critical Care channel in F1000Research
Reflections on the use of the World Health Organization's (WHO) OneHealth Tool: Implications for health planning in low and middle income countries (LMICs)
GeNePy3D: a quantitative geometry python toolbox for large scale bioimaging
Analysing antecedence of an intelligent voice assistant use intention and behaviour
The Cytoscape Automation app article collection
GenRank: a R/Bioconductor package for prioritization of candidate genes
Development of an informatics system for accelerating biomedical research
multiomics: A user-friendly multi-omics data harmonisation R pipeline
Three datasets for nutrition environment measures of food outlets located in the Lower Mississippi Delta region of the United States
Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces
BioHackathon 2015: Semantics of data for life sciences and reproducible research
Niche Genetic Algorithms are better than traditional Genetic Algorithms for de novo Protein Folding
A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos
Taxa: An R package implementing data standards and methods for taxonomic data
Recommendations for the packaging and containerizing of bioinformatics software
MSclassifier: median-supplement model-based classification tool for automated knowledge discovery
Clinotator: analyzing ClinVar variation reports to prioritize reclassification efforts
CASAS: Cancer Survival Analysis Suite, a web based application
Carrying out streamlined routine data analyses with reports for observational studies: introduction to a series of generic SAS ® macros
Viewing RNA-seq data on the entire human genome
Artificial intelligence based glaucoma and diabetic retinopathy detection using MATLAB - retrained AlexNet convolutional neural network
Exploiting the DepMap cancer dependency data using the depmap R package
Creating, generating and comparing random network models with Network Randomizer
Towards reproducible research: From data analysis (in R) to a typeset laboratory notebook (as .pdf) using the text editor Emacs with the 'mp' package
Comparison of human population receptive field estimates between scanners and the effect of temporal filtering
gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2
Sustainable data analysis with Snakemake
Time for sharing data to become routine: the seven excuses for not doing so are all invalid
The challenges of theory-software translation
Facebook and mental wellbeing: a crossover randomised controlled study
UTAUT for HSS: initial framework to study health IT adoption in the developing countries
Assessing drug target suitability using TargetMine
enhancedGraphics: a Cytoscape app for enhanced node graphics
Formal definition of the MARS method for quantifying the unique target class discoveries of selected machine classifiers
Unit testing, model validation, and biological simulation
ReactomeFIViz: the Reactome FI Cytoscape app for pathway and network-based data analysis
Meta-Signer: Metagenomic Signature Identifier based onrank aggregation of features
Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
TCGA Workflow : Analyze cancer genomics and epigenomics data using Bioconductor packages
Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
Detecting "protein words" through unsupervised word segmentation
Brain-to-Brain (mind-to-mind) interaction at distance: a confirmatory study
Improving the data access control using blockchain for healthcare domain
Extraction of CPRD additional clinical data using R
Time to really share real-world data?
A hands-on introduction to querying evolutionary relationships across multiple data sources using SPARQL
META-pipe cloud setup and execution
The dorsal posterior insula is not an island in pain but subserves a fundamental role - Response to: "Evidence against pain specificity in the dorsal posterior insula" by Davis et al.
Knowledge discovery for Deep Phenotyping serious mental illness from Electronic Mental Health records
Harassment of game makers: Prevalence and impact
ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis
Introducing R as a smart version of calculators enables beginners to explore it on their own
Biometric and genetic differences in kelabau ( Osteochilus spp.) as revealed using cytochrome c oxidase subunit 1
Multi-site tumor sampling (MSTS) improves the performance of histological detection of intratumor heterogeneity in clear cell renal cell carcinoma (CCRCC)
QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing
A data-driven approach to estimating the number of clusters in hierarchical clustering
High-resolution 7-Tesla fMRI data on the perception of musical genres - an extension to the studyforrest dataset
Automated analysis of retinal imaging using machine learning techniques for computer vision
The Liability of Artificial Intelligence's Moral Dilemma
illuminaio : An open source IDAT parsing tool for Illumina microarrays
Robust and efficient identification of biomarkers from RNA-Seq data using median control chart
Data protection record of processing activities and privacy notice generator toolkit by EMBL's European Bioinformatics Institute
Attention Network Test fMRI data for participants with Parkinson's disease and healthy elderly
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
The impact factor of an open access journal does not contribute to an article's citations
Perspectives on automated composition of workflows in the life sciences
Turning any bed into an intensive care unit with the Internet of things and artificial intelligence technology. Presenting the enhanced mechanical ventilator
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
KnowMore: an automated knowledge discovery tool for the FAIR SPARC datasets
WordCommentsAnalyzer: A windows software tool for qualitative research
Signal-processing tools for core-collection selection from genetic-resource collections
An active human role is essential in big data-led decisions and data-intensive science
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018)
Prediction of multi-drug resistance transporters using a novel sequence analysis method
Analysis of a large food chemical database: chemical space, diversity, and complexity
CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline
An object oriented implementation of the Yeadon human inertia model
Wearable technology and health: A bibliometric analysis using SciMAT
Understanding covariate shift in model performance
CanVar: A resource for sharing germline variation in cancer patients
target: an R package to predict combined function of transcription factors
Large-scale protein function prediction using heterogeneous ensembles
2017 ISCB Accomplishment by a Senior Scientist Award: Pavel Pevzner
Expert interviews with science communicators: How perceptions of audience values influence science communication values and practices
FreeSASA: An open source C library for solvent accessible surface area calculations
Validating the use of Medicare Australia billing data to examine trends in skin cancer
A computer model simulating human glucose absorption and metabolism in health and metabolic disease states
Gene Unprediction with Spurio: A tool to identify spurious protein sequences
Massive open online courses on biomedical informatics
RP-REP Ribosomal Profiling Reports: an open-source cloud-enabled framework for reproducible ribosomal profiling data processing, analysis, and result reporting
PRESa2i: incremental decision trees for prediction of Adenosine to Inosine RNA editing sites
Optimal price-based control of heterogeneous thermostatically controlled loads under uncertainty using LSTM networks and genetic algorithms
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks
Predicting discontinuation of docetaxel treatment for metastatic castration-resistant prostate cancer (mCRPC) with random forest
Data set of a representative online survey on search engines with a focus on search engine optimization (SEO): a cross-sectional study
Silicon Valley new focus on brain computer interface: hype or hope for new applications?
Advantages of distributed and parallel algorithms that leverage Cloud Computing platforms for large-scale genome assembly
Prenatal brain MRI samples for development of automatic segmentation, target- recognition and machine-learning algorithms to detect anatomical structures
Visualizing balances of compositional data: A new alternative to balance dendrograms
Visualisation of BioPAX Networks using BioLayout Express 3D
cophesim: A comprehensive phenotype simulator for testing novel association methods
netSmooth : Network-smoothing based imputation for single cell RNA-seq
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
DangerTrack: A scoring system to detect difficult-to-assess regions
Computational identification of signaling pathways in protein interaction networks
FastQ Screen: A tool for multi-genome mapping and quality control
The implications of Industry 4.0 on supply chains amid the COVID-19 pandemic: a systematic review
BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem
Social Network: a Cytoscape app for visualizing co-publication networks
Preprints and Scholarly Communication: Adoption, Practices, Drivers and Barriers
Precision medicine technology hype or reality? The example of computer-guided dosing
Detection and mitigation of spurious antisense expression with RoSA
A novel data storage logic in the cloud
ddpcr: an R package and web application for analysis of droplet digital PCR data
Uncovering host-microbiome interactions in global systems with collaborative programming: a novel approach integrating social and data sciences
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics
Cancer Publication Portal: an online tool for summarizing and searching human cancer-genomic publications
Improving paper-based discharge process; a continuous full-cycle quality improvement project in low resource setting
Identifying communities from multiplex biological networks by randomized optimization of modularity
Data management challenges for artificial intelligence in plant and agricultural research
CyAnimator: Simple Animations of Cytoscape Networks
Plotly.NET: A fully featured charting library for .NET programming languages
gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler
TicTimer Web: software for measuring tic suppression remotely
A pocket guide to electronic laboratory notebooks in the academic life sciences
Bibliometric analysis of Oropouche research: impact on the surveillance of emerging arboviruses in Latin America
taxize: taxonomic search and retrieval in R
Cluster Flow: A user-friendly bioinformatics workflow tool
The simplicity of XGBoost algorithm versus the complexity of Random Forest, Support Vector Machine, and Neural Networks algorithms in urban forest classification
Building pathway graphs from BioPAX data in R
iSEE: Interactive SummarizedExperiment Explorer
Optimal threshold estimation for binary classifiers using game theory
Consumer perspectives on reproductive health after using the Jakpros smart mobile health application: A cross-sectional, qualitative study
Application of Fuzzy Deep Neural Networks for Covid 19 diagnosis through chest Radiographs
Head models of healthy and depressed adults for simulating the effects of non-invasive brain stimulation
Four simple recommendations to encourage best practices in research software
Risk prediction model for 24-hour mortality in preterm infants using lactate and blood gas analysis: A machine learning approach and retrospective cohort study
Predicting ionizing radiation exposure using biochemically-inspired genomic machine learning
Pathogen Sequence Signature Analysis (PSSA): A software tool for analyzing sequences to identify microorganism genotypes
Improve your Galaxy text life: The Query Tabular Tool
CyLineUp: A Cytoscape app for visualizing data in network small multiples
Computational science: shifting the focus from tools to models
Considerations for clinical read alignment and mutational profiling using next-generation sequencing
Increasing workflow development speed and reproducibility with Vectools
A pilot study on assessing the role of intra-operative Flow 800 vascular map model in predicting onset of vasospasm following micro vascular clipping of ruptured intracranial aneurysms
EEG correlation at a distance: A re-analysis of two studies using a machine learning approach
Understanding life sciences data curation practices via user research
Density artefacts at interfaces caused by multiple time-step effects in molecular dynamics simulations
Motion and Geometric Feature Analysis for Real-time Automatic Micro-expression Recognition Systems
Amending published articles: time to rethink retractions and corrections?
A flexible user-interface for audiovisual presentation and interactive control in neurobehavioral experiments
AnalogExplorer2 - Stereochemistry sensitive graphical analysis of large analog series
Key Concepts for assessing claims about treatment effects and making well-informed treatment choices
Improving educational environment in medical colleges through transactional analysis practice of teachers
On the design of linked datasets mapping networks of collaboration in the genomic sequencing of Saccharomyces cerevisiae , Homo sapiens , and Sus scrofa
Implications for Poor Public Healthcare System of South Korea Revealed in MERS Outbreak
Epidemic Healthcare Kiosk: A Social Economic Remote Solution Using IoT
Inflammatory Cell Extraction and Nuclei Detection in Pap Smear Images
Heart Disease Diagnosis Using Fuzzy Supervised Learning Based on Dynamic Reduced Features
The mHealth Stack: Technology Enablers for Patient-Centric Mobile Healthcare
Applications of Intelligent Agents in Health Sector-A Review
Advanced Electroencephalogram Processing: Automatic Clustering of EEG Components
A Comprehensive Survey on Quantum Machine Learning and Possible Applications
Diagnostic Assessment Techniques and Non-Invasive Biomarkers for Autism Spectrum Disorder
Towards Multi-Agent Health Information Systems
GIS Based Health Information Management through LETL, Multi Criteria Query, Analysis, Visualization
Smart Agent-Based Hospital Search, Appointment, and Medical Diagnosis
Diagnosis of Breast Cancer Using Intelligent Information Systems Techniques
Neural Networks for an Analysis of the Hemometabolites Biosensor Response
Securing Remote Obstetrics Monitoring Systems