yusuke1997/dblp-id-title huggingface dataset:
OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases
KeepDelta: A Python Library for Human-Readable Data Differencing
GOBLIN Lite: A National Land Balance Model for Assessment of Climate Mitigation Pathways for Ireland
The MOOSE geochemistry module
Bacting: a next generation, command line version of Bioclipse
Climate variability indices for ecological and crop models in R: the climatrends package
lczexplore: an R package to explore Local Climate Zone classifications
pyprop8: A lightweight code to simulate seismic observables in a layered half-space
PyAstroPol: A Python package for the instrumental polarization analysis of the astronomical optics
CompressedBeliefMDPs.jl: A Julia Package for Solving Large POMDPs with Belief Compression
Fruitbat: A Python Package for Estimating Redshifts of Fast Radio Bursts
bem: modeling for neutron Bragg-edge imaging
Simulated Diffusion in Realistic Imaging Features of Tissue (Sim-DRIFT)
RFBzero: A Python package for zero-dimensional simulation of redox flow battery cycling
servir-aces: A Python Package for Training Machine Learning Models for Remote Sensing Applications
Dryft: A Python and MATLAB package to correct drifting ground reaction force signals during treadmill running
Fasten: a toolkit for streaming operations on fastq files
Mapelia and friends: create 3D models from maps
PositiveIntegrators.jl: A Julia library of positivity-preserving time integration methods
SIMSOPT: A flexible framework for stellarator optimization
wbacon: Weighted BACON algorithms for multivariate outlier nomination (detection) and robust linear regression
spectrapepper: A Python toolbox for advanced analysis of spectroscopic data for materials and devices
aweSOM: a CPU/GPU-accelerated Self-organizing Map and Statistically Combined Ensemble Framework for Machine-learning Clustering Analysis
netrd: A library for network reconstruction and graph distances
pyBEMT: An implementation of the Blade Element Momentum Theory in Python
PDR: The Planetary Data Reader
VPsearch: fast exact sequence similarity search for genomic sequences
compboost: Modular Framework for Component-Wise Boosting
pysrim: Automation, Analysis, and Plotting of SRIM Calculations
Syn-CpG-Spacer: A Panel web app for synonymous recoding of viral genomes with CpG dinucleotides
Generative DAGs as an Interface Into Probabilistic Programming with the R Package causact
dataquieR: assessment of data quality in epidemiological research
pyMechT: A Python package for mechanics of soft tissues
SODAR Core: a Django-based framework for scientific data management and analysis web apps
PythonicDISORT: A Python reimplementation of the Discrete Ordinate Radiative Transfer package DISORT
Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions
matlab-igraph: bringing igraph to MATLAB
genomepy: download genomes the easy way
pulse: A python package based on FEniCS for solving problems in cardiac mechanics
ccostr: An R package for estimating mean costs with censored data
TensorInference: A Julia package for tensor-based probabilistic inference
EllipticForest: A Direct Solver Library for Elliptic Partial Differential Equations on Adaptive Meshes
riccati: an adaptive, spectral solver for oscillatory ODEs
PyBox: An automated box-model generator for atmospheric chemistry and aerosol simulations
SimuPy Flight Vehicle Toolkit
Automatic Computation for Robot Design (ACRoD): A Python package for numerical calculation of Jacobian of a robot at a given configuration around a specified end-effector point
OnToCode: Template-based code-generation from ontologies
eSCAPE: parallel global-scale landscape evolution model
DiffOpt: Parallel optimization of Jax models
Corekaburra: pan-genome post-processing using core gene synteny
Cylc: A Workflow Engine for Cycling Systems
The drake R package: a pipeline toolkit for reproducibility and high-performance computing
radioactivedecay: A Python package for radioactive decay calculations
pyGCodeDecode: A Python package for time-accurate GCode simulation in material extrusion processes
Feature-engine: A Python package for feature engineering for machine learning
weathercan: Download and format weather data from Environment and Climate Change Canada
ggparliament: A ggplot2 extension for parliament plots in R
BigX: A geographical dataset visualisation tool
OpenTripPlanner for R
Enhanced software and platform for the Town Energy Balance (TEB) model
SleepECG: a Python package for sleep staging based on heart rate
Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity
A tool for qualitative data analysis designed to support computational thinking
multimatch-gaze: The MultiMatch algorithm for gaze path comparison in Python
mpi4py-fft: Parallel Fast Fourier Transforms with MPI for Python
nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline
Ipyannotator: the infinitely hackable annotation framework
PET2BIDS: a library for converting Positron Emission Tomography data to BIDS
Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations
ExoRad 2.0: The generic point source radiometric model
Multiblock PLS: Block dependent prediction modeling for Python
City2BA: Tools for creating synthetic bundle adjustment problems
SonoUno development: a User-Centered Sonification software for data analysis
The Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintained
cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files
rintrojs: A Wrapper for the Intro.js Library
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks
gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data
EPyT-Flow: A Toolkit for Generating Water Distribution Network Data
Pyret: A Python package for analysis of neurophysiology data
ASIMTools: A lightweight framework for scalable and reproducible atomic simulations
Learning Simulator: A simulation software for animal and human learning
toughio: Pre- and post-processing Python library for TOUGH
constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators
reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome
BladeX: Python Blade Morphing
array_split: Multi-dimensional array partitioning
secuTrialR: Seamless interaction with clinical trial databases in R
SeismicMesh: Triangular meshing for seismology
Caliscope: GUI Based Multicamera Calibration and Motion Tracking
AIgarMIC: a Python package for automated interpretation of agar dilution minimum inhibitory concentration assays
SimpleSDMLayers.jl and GBIF.jl: A Framework for Species Distribution Modeling in Julia
Git-RDM: A research data management plugin for the Git version control system
Chips-n-Salsa: A Java Library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms
MoSDeF-dihedral-fit: A lightweight software for fitting dihedrals within MoSDeF
Larq: An Open-Source Library for Training Binarized Neural Networks
SpectralModel: a high-resolution framework for petitRADTRANS 3
SALSA: A Python Package for Constructing Synthetic Quasar Absorption Line Catalogs from Astrophysical Hydrodynamic Simulations
SCALAR - A Platform for Real-time Machine Learning Competitions on Data Streams
experDesign: stratifying samples into batches with minimal bias
Unishox: A hybrid encoder for Short Unicode Strings
ThermoFun: A C++/Python library for computing standard thermodynamic properties of substances and reactions across wide ranges of temperatures and pressures
VineCopulas: an open-source Python package for vine copula modelling
A parallel global multiobjective framework for optimization: pagmo
Windrose: A Python Matplotlib, Numpy library to manage wind and pollution data, draw windrose
HelpMe Command Line Helper Utility
uravu: Making Bayesian modelling easy(er)
ivis: dimensionality reduction in very large datasets using Siamese Networks
DisCoTec: Distributed higher-dimensional HPC simulations with the sparse grid combination technique
A MATLAB toolbox to detect and analyze marine heatwaves
FastGeodis: Fast Generalised Geodesic Distance Transform
sbi: A toolkit for simulation-based inference
REvoSim v3: A fast evolutionary simulation tool with ecological processes
DEPP - Differential Evolution Parallel Program
Port: A software tool for digital data donation
gsMAMS: an R package for Designing Multi-Arm Multi-Stage Clinical Trials
getCRUCLdata: Use and Explore CRU CL v. 2.0 Climatology Elements in R
DataLad: distributed system for joint management of code, data, and their relationship
MM-PoE: Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models
hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks
IPART: A Python Package for Image-Processing based Atmospheric River Tracking
Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow
CaPS: Casimir Effect in the Plane-Sphere Geometry
dyntapy: dynamic and static traffic assignment in Python
Pyrokinetics - A Python library to standardise gyrokinetic analysis
Gala: A Python package for galactic dynamics
LEGWORK: A python package for computing the evolution and detectability of stellar-origin gravitational-wave sources with space-based detectors
TrackerControl: Transparency and Choice around App Tracking
pysr3: A Python Package for Sparse Relaxed Regularized Regression
disksurf: Extracting the 3D Structure of Protoplanetary Disks
VeridicalFlow: a Python package for building trustworthy data science pipelines with PCS
DL_Track_US: a python package to analyse muscle ultrasonography images
Artery.FE: An implementation of the 1D blood flow equations in FEniCS
COINSTAC: Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation
DESPASITO: A Python Package for SAFT EOS Parametrization and Thermodynamic Calculations
kallisto: A command-line interface to simplify computational modelling and the generation of atomic features
dlmmc: Dynamical linear model regression for atmospheric time-series analysis
AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning
ConFluxPro: A toolkit for soil gas analysis
AtomNeb: IDL Library for Atomic Data of Ionized Nebulae
flowTorch - a Python library for analysis and reduced-order modeling of fluid flows
PEFAP : Estimating the environmental footprint of food products from packaging data
bioLEC: A Python package to measure Landscape Elevational Connectivity
GHEtool: An open-source tool for borefield sizing in Python
pyopmspe11: A Python framework using OPM Flow for the SPE11 benchmark project
eemont: A Python package that extends Google Earth Engine
SummationByPartsOperators.jl: A Julia library of provably stable discretization techniques with mimetic properties
malan: MAle Lineage ANalysis
HostPhot: global and local photometry of galaxies hosting supernovae or other transients
pyCADMium: Chemical Atoms in Diatomic Molecules. A prolate spheroidal Python module for embedding calculations
Building, Importing, and Exporting GEXF Graph Files with rgexf
gym-saturation: an OpenAI Gym environment for saturation provers
SG-t-SNE-Π: Swift Neighbor Embedding of Sparse Stochastic Graphs
GIMS: Graphical Interface for Materials Simulations
Psymple: A Python package for complex systems modelling
dolfin-adjoint 2018.1: automated adjoints for FEniCS and Firedrake
shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment
QuantNBody: a Python package for quantum chemistry and physics to build and manipulate many-body operators and wave functions
MSMExplorer: Data Visualizations for Biomolecular Dynamics
seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies
Singularity-EOS: Performance Portable Equations of State and Mixed Cell Closures
OptiCommPy: Open-source Simulation of Fiber Optic Communications with Python
infotheory: A C++/Python package for multivariate information theoretic analysis
The Pulsar Signal Simulator: A Python package for simulating radio signal data from pulsars
GGMnonreg: Non-Regularized Gaussian Graphical Models in R
xinvert: A Python package for inversion problems in geophysical fluid dynamics
BasicTools: a numerical simulation toolbox
MacroModelling.jl: A Julia package for developing and solving dynamic stochastic general equilibrium models
Halotools: A New Release Adding Intrinsic Alignments to Halo-Based Methods
corporaexplorer: An R package for dynamic exploration of text collections
hdlib: A Python library for designing Vector-Symbolic Architectures
UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions
swsc: A sitewise UCE partitioner
Pysewer: A Python Library for Sewer Network Generation in Data Scarce Regions
DIANNA: Deep Insight And Neural Network Analysis
DAFSA: a Python library for Deterministic Acyclic Finite State Automata
Foam: A Python package for forward asteroseismic modelling of gravity modes
PySINDy: A Python package for the sparse identification of nonlinear dynamical systems from data
Basicsums: A Python package for computing structural sums and the effective conductivity of random composites
CMasher: Scientific colormaps for making accessible, informative and 'cmashing' plots
MousebreedeR: A novel software to assist in the design of breeding schema for complex genotypes of experimental organisms
PyNGHam: A Python library of the NGHam protocol
Machine Learning Validation via Rational Dataset Sampling with astartes
pymgpipe: microbiome metabolic modeling in Python
mlpack 3: a fast, flexible machine learning library
The MTPy software package for magnetotelluric data analysis and visualisation
RHEA: an open-source Reproducible Hybrid-architecture flow solver Engineered for Academia
TextDescriptives: A Python package for calculating a large variety of metrics from text
partycls: A Python package for structural clustering
Nanoq: ultra-fast quality control for nanopore reads
AQCNES: A Quasi-Continuum Non-Equilibrium Solver
Swiftest: An \textit{N}-body Integrator for Gravitational Systems
LoadProfileGenerator: An Agent-Based Behavior Simulation for Generating Residential Load Profiles
MCSD: A MATLAB Tool for Monte-Carlo Simulations of Diffusion in biological Tissues
Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data
Text detection in screen images with a Convolutional Neural Network
RepnDecomp: A GAP package for decomposing linear representations of finite groups
PyGRB: A pure Python gamma-ray burst analysis package
PFEIFER: Preprocessing Framework for Electrograms Intermittently Fiducialized from Experimental Recordings
A Python Tool for Predicting and Assessing Unconventional Rare-Earth and Critical Mineral Resources
snSMART: An R Package for Small Sample, Sequential, Multiple Assignment, Randomized Trial Data Analysis
PySensors: A Python package for sparse sensor placement
rgee: An R package for interacting with Google Earth Engine
MNELAB: a graphical user interface for MNE-Python
simstudy: Illuminating research methods through data generation
bomrang: Fetch Australian Government Bureau of Meteorology Data in R
DRDMannTurb: A Python package for scalable, data-driven synthetic turbulence
The psyplot interactive visualization framework
morse: an R-package to analyse toxicity test data
MPIFiles.jl: A Julia Package for Magnetic Particle Imaging Files
MetObs - a Python toolkit for using non-traditional meteorological observations
PyGeoPressure: Geopressure Prediction in Python
YAD: A Learning-based Inductive Logic Programming Tool
Limbo: A Flexible High-performance Library for Gaussian Processes modeling and Data-Efficient Optimization
BoARIO: A Python package implementing the ARIO indirect economic cost model
xesn: Echo state networks powered by Xarray and Dask
A Library of Lower Fidelity Dynamics Models (LFDMs) For On-Road Vehicle Dynamics Targeting Faster Than Real-Time Applications
VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis
RK-Opt: A package for the design of numerical ODE solvers
miet: an R package for region of interest analysis from magnetic reasonance images
PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics
pyhector: A Python interface for the simple climate model Hector
TimeStruct.jl - flexible multi-horizon time modelling in optimization models
whampy: Python Package to Interact with, Visualize, and Analyze the Wisconsin H-Alpha Mapper - Sky Survey
Lepton: An automaton for Literate Executable Papers
dtrackr: An R package for tracking the provenance of data
weatherOz: An API Client for Australian Weather and Climate Data Resources in R
sbi reloaded: a toolkit for simulation-based inference workflows
sntools: An event generator for supernova burst neutrinos
lhorizon: geometry and targeting via JPL Horizons
PopMedNet: A scalable and extensible open-source informatics platform designed to facilitate the implementation and operation of distributed health data networks
pymnet: A Python Library for Multilayer Networks
\texttt{stella}: Convolutional Neural Networks for Flare Identification in \textit{TESS}
BGmisc: An R Package for Extended Behavior Genetics Analysis
Time-frequency component of the GreenX library: minimax grids for efficient RPA and \textit{GW} calculations
register: Registration for Exponential Family Functional Data
SSN2: The next generation of spatial stream network modeling in R
The Python Sky Model 3 software
PyVBMC: Efficient Bayesian inference in Python
MQT Core: The Backbone of the Munich Quantum Toolkit (MQT)
netroles: A Java library for role equivalence analysis in networks
PyTransport: A Python package for the calculation of inflationary correlation functions
set6: R6 Mathematical Sets Interface
statemodify: a Python framework to facilitate accessible exploratory modeling for discovering drought vulnerabilities
UnlockNN: Uncertainty quantification for neural network models of chemical systems
Phylogemetric: A Python library for calculating phylogenetic network metrics
ReinforcementLearning: A Package to Perform Model-Free Reinforcement Learning in R
graynet: single-subject morphometric networks for neuroscience connectivity applications
SWAMPE: A Shallow-Water Atmospheric Model in Python for Exoplanets
oce: an R package for Oceanographic Analysis
fitODBOD: An R Package to Model Binomial Outcome Data using Binomial Mixture and Alternate Binomial Distributions
An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews
HyperNaut: a navigator for the hyperbolic plane
hydroscoper: R interface to the Greek National Data Bank for Hydrological and Meteorological Information
bfit: A Python Application For Beta-Detected NMR
repytah: An Open-Source Python Package for Building Aligned Hierarchies for Sequential Data
bíogo/ncbi: interfaces to NCBI services for the Go language
Copper: a performance curve generator for building energy simulation
Extracting, Computing and Exploring the Parameters of Statistical Models using R
highlightHTML: CSS Formatting of R Markdown Documents
ropenblas: Download, Compile and Link OpenBLAS Library with R
Mashtree: a rapid comparison of whole genome sequence files
BayesianNetwork: Interactive Bayesian Network Modeling and Analysis
Cocktail Shaker: An open source drug expansion and enumeration library for peptides
tissueloc: Whole slide digital pathology image tissue localization
dorado: A Python package for simulating passive particle transport in shallow-water flows
PACMAN: A pipeline to reduce and analyze Hubble Wide Field Camera 3 IR Grism data
neworder: a dynamic microsimulation framework for Python
RIAssigner: A package for gas chromatographic retention index calculation
Blimpy: Breakthrough Listen I/O Methods for Python
diyepw: A Python package for Do-It-Yourself EnergyPlus weather file generation
EndoMineR for the extraction of endoscopic and associated pathology data from medical reports
binary_c-python: A Python-based stellar population synthesis tool and interface to binary_c
PyMS: Python for Mycorrhizal Symbiosis data analysis
lidarwind: A Python package for retrieving wind profiles from Doppler lidar observations
Krang: Kerr Raytracer for Analytic Null Geodesics
Af-analysis: a Python package for Alphafold analysis
Scan Session Tool: (f)MRI scan session documentation and archiving
Nempy: A Python package for modelling the Australian National Electricity Market dispatch procedure
COINr: An R package for developing composite indicators
NeuNorm: Neutron Imaging Normalization Library
Cthulhu: An Open Source Molecular and Atomic Cross Section Computation Code for Substellar Atmospheres
cspy: A Python package with a collection of algorithms for the (Resource) Constrained Shortest Path problem
DrWatson: the perfect sidekick for your scientific inquiries
ORMIR_XCT: A Python package for high resolution peripheral quantitative computed tomography image processing
mlr3: A modern object-oriented machine learning framework in R
GasChromatographySimulator.jl
quantile-forest: A Python Package for Quantile Regression Forests
Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype
Moltres: finite element based simulation of molten salt reactors
Dune-MMesh: The Dune Grid Module for Moving Interfaces
directChillFoam: an OpenFOAM application for direct-chill casting
PyUoI: The Union of Intersections Framework in Python
BASICO: A simplified Python interface to COPASI
toqito - Theory of quantum information toolkit: A Python package for studying quantum information
stats19: A package for working with open road crash data
Qiskit Dynamics: A Python package for simulating the time dynamics of quantum systems
GPJax: A Gaussian Process Framework in JAX
CLEAVING: a LAMMPS package to compute surface free energies
RivGraph: Automatic extraction and analysis of river and delta channel network topology
foamlib: A modern Python package for working with OpenFOAM
Multiscale Solar Water Heating
fortran-src: Fortran static analysis infrastructure
Spiner: Performance Portable Routines for Generic, Tabulated, Multi-Dimensional Data
flowMC: Normalizing flow enhanced sampling package for probabilistic inference in JAX
pygen-structures: A Python package to generate 3D molecular structures for simulations using the CHARMM forcefield
individual: An R package for individual-based epidemiological models
PxMCMC: A Python package for proximal Markov Chain Monte Carlo
A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it
ClimDown: Climate Downscaling in R
Spruceup: fast and flexible identification, visualization, and removal of outliers from large multiple sequence alignments
InsarViz: An open source Python package for the interactive visualization of satellite SAR interferometry data
'Sequana': a Set of Snakemake NGS pipelines
FSharpGephiStreamer: An idiomatic bridge between F# and network visualization
VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python
Representation and Manipulation of Genomic Tuples in R
itmlogic: The Irregular Terrain Model by Longley and Rice
DiscreteEntropy.jl: Entropy Estimation of Discrete Random Variables with Julia
HRDS: A Python package for hierarchical raster datasets
XLUR: A land use regression wizard for ArcGIS Pro
PDENLPModels.jl: An NLPModel API for Optimization Problems with PDE-Constraints
Pydre: A Python package for driving simulation data reduction
DEEPaaS API: a REST API for Machine Learning and Deep Learning models
fmcmc: A friendly MCMC framework
Ripser.py: A Lean Persistent Homology Library for Python
AltaiPony - Flare science in Kepler, K2 and TESS light curves
FIRESONG: A python package to simulate populations of extragalactic neutrino sources
qMRLab: Quantitative MRI analysis, under one umbrella
SampleDB: A sample and measurement metadata database
microPIECE - microRNA pipeline enhanced by CLIP experiments
diff_classifier: Parallelization of multi-particle tracking video analyses