yusuke1997/dblp-id-title huggingface dataset:
CoreBreakout: Subsurface Core Images to Depth-Registered Datasets
pygtc: beautiful parameter covariance plots (aka. Giant Triangle Confusograms)
Caustics: A Python Package for Accelerated Strong Gravitational Lensing Simulations
JavaPermutationTools: A Java Library of Permutation Distance Metrics
Finnish Media Scrapers
LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia
The SAGE Rejected Article Tracker
biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals
fastatomstruct: A High-Performance Library for Structural and Dynamical Analysis of Atomic Systems
Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes
PyNomaly: Anomaly detection using Local Outlier Probabilities (LoOP)
Peacock.jl: Photonic crystals in Julia
PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView
'SIMsalabim': An open-source drift-diffusion simulator for semiconductor devices
SeqPanther: Sequence manipulation and mutation statistics toolset
Vizumap: an R package for visualising uncertainty in spatial data
FullSWOF: Full Shallow-Water equations for Overland Flow
Openseize: A digital signal processing package for large EEG datasets in Python
SlicerSPECTRecon: A 3D Slicer Extension for SPECT Image Reconstruction
PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling
Fast, Consistent Tokenization of Natural Language Text
ocean_data_tools: A MATLAB toolbox for interacting with bulk freely-available oceanographic data
Simulation Decomposition in Python
pymccrgb: Color- and curvature-based classification of multispectral point clouds in Python
pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples
measr: Bayesian psychometric measurement using Stan
GraphSL: An Open-Source Library for Graph Source Localization Approaches and Benchmark Datasets
gcamfaostat: An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling
ncompare: A Python package for comparing netCDF structures
RiskPortfolios: Computation of Risk-Based Portfolios in R
MetalWalls: A classical molecular dynamics software dedicated to the simulation of electrochemical systems
ExoTiC-LD: thirty seconds to stellar limb-darkening coefficients
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
VIP: A Python package for high-contrast imaging
QMKPy: A Python Testbed for the Quadratic Multiple Knapsack Problem
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis
PyPO: a Python package for Physical Optics
One4All: An Open Source Portal to Validate and Share Microplastics Data and Beyond
Mangal.jl and EcologicalNetworks.jl: Two complementary packages for analyzing ecological networks in Julia
hectorui: A web-based interactive scenario builder and visualization application for the Hector climate model
pyflowline: a mesh-independent river network generator for hydrologic models
lattice_mc: A Python Lattice-Gas Monte Carlo Module
Efficiently Learning Relative Similarity Embeddings with Crowdsourcing
psi-collect: A Python module for post-storm image collection and cataloging
AutoEmulate: A Python package for semi-automated emulation
Annotation Sniffer: A tool to Extract Code Annotations Metrics
BioProv - A provenance library for bioinformatics workflows
SONIC: Software for Optical Navigation and Instrument Calibration
PyRASA - Spectral parametrization in python based on IRASA
colorspace: A Python Toolbox for Manipulating and Assessing Colors and Palettes
gratia: An R package for exploring generalized additive models
pymdp: A Python library for active inference in discrete state spaces
prysm: A Python optics module
Linopy: Linear optimization with n-dimensional labeled variables
TextWiller: Collection of functions for text mining, specially devoted to the Italian language
XGI: A Python package for higher-order interaction networks
pridepy: A Python package to download and search data from PRIDE database
kokkos-fft: A shared-memory FFT for the Kokkos ecosystem
RT-utils: A Minimal Python Library for RT-struct Manipulation
DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology
PowNet 2.0: A production cost modeling framework for large-scale power systems
DscoreApp: An user-friendly web application for computing the Implicit Association Test D-score
Simple DFT-D3: Library first implementation of the D3 dispersion correction
AuDoLab: Automatic document labelling and classification for extremely unbalanced data
Discrete Laplace mixture model with applications in forensic genetics
ICAT: The Interactive Corpus Analysis Tool
QGDipoles.jl: A Julia package for calculating dipolar vortex solutions to the Quasi-Geostrophic equations
quimb: A python package for quantum information and many-body calculations
hmis: A python tool to visualize and analyze HMIS data
gaia: An R package to estimate crop yield responses to temperature and precipitation
SimuPy: A Python framework for modeling and simulating dynamical systems
REHO: A Decision Support Tool for Renewable Energy Communities
Qiskit Experiments: A Python package to characterize and calibrate quantum computers
Elektra: universal framework to access configuration parameters
Ising_OPV v4.0: Experimental Tomography Data Import, Interpretation, and Analysis
rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering
HARDy: Handling Arbitrary Recognition of Data in Python
hf_hydrodata: A Python package for accessing hydrologic simulations and observations across the United States
The Kestrel software for simulations of morphodynamic Earth-surface flows
fitgrid: A Python package for multi-channel event-related time series regression modeling
Cellocity: A Python package for analysis of confluent cell layer dynamics
coalitions: Coalition probabilities in multi-party democracies
PIVC: A C/C++ Program for Particle Image Velocimetry Vector Computation
ddtlcm: An R package for overcoming weak separation in Bayesian latent class analysis via tree-regularization
Black-it: A Ready-to-Use and Easy-to-Extend Calibration Kit for Agent-based Models
Helper for Bézier Curves, Triangles, and Higher Order Objects
Koverage: Read-coverage analysis for massive (meta)genomics datasets
POMDPStressTesting.jl: Adaptive Stress Testing for Black-Box Systems
anadrofish: Anadromous fish population responses to dams
Opyrability: A Python package for process operability analysis
Metatheory.jl: Fast and Elegant Algebraic Computation in Julia with Extensible Equality Saturation
Biosensor Framework: A C# Library for Affective Computing
NiaPy: Python microframework for building nature-inspired algorithms
SODA: Software to Support the Curation and Sharing of FAIR Autonomic Nervous System Data
rOPTRAM: Deriving Soil Moisture from Satellite Imagery in R
WulffPack: A Python package for Wulff constructions
qicharts2: Quality Improvement Charts for R
torchquad: Numerical Integration in Arbitrary Dimensions with PyTorch
remotePARTS: Spatiotemporal autoregression analyses for large data sets
pyGOURGS - global optimization of n-ary tree representable problems using uniform random global search
Pybehave: a hardware agnostic, Python-based framework for controlling behavioral neuroscience experiments
Kinetic.jl: A portable finite volume toolbox for scientific and neural computing
pirecorder: Controlled and automated image and video recording with the raspberry pi
gcamreport: An R tool to process and standardize GCAM outputs
xCDAT: A Python Package for Simple and Robust Analysis of Climate Data
OperationsResearchModels.jl: A Julia package for operations research models
cde - R package to retrieve data from the Environment Agency Catchment Data Explorer site
ESVM: an open-source finite volume Electrostatic Vlasov-Maxwell code
Archeofrag: an R package for Refitting and Spatial Analysis in Archaeology
h5fortran: object-oriented polymorphic Fortran interface for HDF5 file IO
Pakman: a modular, efficient and portable tool for approximate Bayesian inference
simcardems: A FEniCS-based cardiac electro-mechanics solver
PyMarket - A simple library for simulating markets in Python
LyceanEM: A python package for virtual prototyping of antenna arrays, time and frequency domain channel modelling
UncertainData.jl: a Julia package for working with measurements and datasets with uncertainties
Tagging Latency Estimator: A Standalone Software for Estimating Latency of Event-Related Potentials in P300-based Brain-Computer Interfaces
eVAS: A user-friendly electronic Visual Analogue Scale
StoSpa2: A C++ software package for stochastic simulations of spatially extended systems
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra
covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the 2019 Coronavirus Disease Pandemic
Φ-ML: Intuitive Scientific Computing with Dimension Types for Jax, PyTorch, TensorFlow & NumPy
pyABC: Efficient and robust easy-to-use approximate Bayesian computation
ERF: Energy Research and Forecasting
CoSApp: a Python library to create, simulate and design complex systems
SWEpy: A Python Library for Quick and Easy Access and Manipulation of MEaSUREs CETB Files for SWE Analysis
SolarSpatialTools: A Python package for spatial solar energy analyses
The SuiteSparse Matrix Collection Website Interface
PyPulseq: A Python Package for MRI Pulse Sequence Design
CalibrateEmulateSample.jl: Accelerated Parametric Uncertainty Quantification
text2map: R Tools for Text Matrices
MeMC: A package for Monte Carlo simulations of spherical shells
ELK: A python package for correcting, analyzing, and diagnosing TESS integrated light curves
hypr: An R package for hypothesis-driven contrast coding
filesstrings: An R package for file and string manipulation
R-Opitools - An Opinion Analytical Tool for Big Digital Text Document (DTD)
PyVISA: the Python instrumentation package
python-ags4: A Python library to read, write, and validate AGS4 geodata files
grlc: the git repository linked data API constructor
scores: A Python package for verifying and evaluating models and predictions with xarray
tidyhydat: Extract and Tidy Canadian Hydrometric Data
AliasFinder: A Python script to search for the true planetary frequency within radial velocity data
GWPopulation: Hardware agnostic population inference for compact binaries and beyond
Fast Resampling and Monte Carlo Methods in Python
AquaCrop.jl: A Process-Based Model of Crop Growth
PyNumDiff: A Python package for numerical differentiation of noisy time-series data
qtl2pleio: Testing pleiotropy vs. separate QTL in multiparental populations
IMPPY3D: Image Processing in Python for 3D Image Stacks
DUGseis: A Python package for real-time and post-processing of picoseismicity
Visualizations with statistical details: The 'ggstatsplot' approach
BGGM: Bayesian Gaussian Graphical Models in R
GPUE: Graphics Processing Unit Gross-Pitaevskii Equation solver
Hoki: Making BPASS accessible through Python
Sports2D: Compute 2D human pose and angles from a video or a webcam
MIDI.jl: Simple and intuitive handling of MIDI data
PyArmadillo: a streamlined linear algebra library for Python
SysIdentPy: A Python package for System Identification using NARMAX models
gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API
arcos and arcospy: R and Python packages for accessing the DEA ARCOS database from 2006 - 2014
concstats: Market Structure, Concentration and Inequality Measures, with R
fgivenx: A Python package for functional posterior plotting
CLIMLAB: a Python toolkit for interactive, process-oriented climate modeling
OPTIMUS: A Multidimensional Global Optimization Package
Rclean: A Tool for Writing Cleaner, More Transparent Code
hal9001: Scalable highly adaptive lasso regression in R
Equilipy: a python package for calculating phase equilibria
rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API
eo-tides: Tide modelling tools for large-scale satellite Earth observation analysis
21cmFAST v3: A Python-integrated C code for generating 3D realizations of the cosmic 21cm signal
GeoHexViz: A Python package for the visualizing hexagonally binned geospatial data
QuantumACES.jl: design noise characterisation experiments for quantum computers
spINAR: An R Package for Semiparametric and Parametric Estimation and Bootstrapping of Integer-Valued Autoregressive (INAR) Models
Topography-based surface water modeling in Julia, with support for infiltration and temporal developments
deflake.rs: Detect Flaky Tests in Rust Projects using Execution Data
kima: Exoplanet detection in radial velocities
AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export
TorchSurv: A Lightweight Package for Deep Survival Analysis
matchms - processing and similarity evaluation of mass spectrometry data
BeeNestABM: An open-source agent-based model of spatiotemporal distribution of bumblebees in nests
lawn: An R client for the Turf Javascript Library for Geospatial Analysis
AgriFoodPy: a package for modelling food systems
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust
PyExperimenter: Easily distribute experiments and track results
CoreRobotics: An object-oriented C++ library with cross-language wrappers for cross-platform robot control
MPA: a novel cross-language API for time series analysis
eva3dm: A R-package for model evaluation of 3D weather and air quality models
Turftopic: Topic Modelling with Contextual Representations from Sentence Transformers
CrystalGrowthTracker: A Python package to analyse crystal face advancement rates from time lapse synchrotron radiography
lattice-symmetries: A package for working with quantum many-body bases
limHaloPT: A Numerical Package for Accurate Modeling of Line Intensity Power Spectrum
aion: An R Package to Represent Archaeological Time Series
psrqpy: a python interface for querying the ATNF pulsar catalogue
PAPRECA: A parallel hybrid off-lattice kinetic Monte Carlo/molecular dynamics simulator
starry_process: Interpretable Gaussian processes for stellar light curves
libscientific: A Powerful C Library for Multivariate Analysis
GeoStats.jl - High-performance geostatistics in Julia
PyEscape: A narrow escape problem simulator package for Python
nomisr: Access 'Nomis' UK Labour Market Data
BisPy: Bisimulation in Python
GMP-Featurizer: A parallelized Python package for efficiently computing the Gaussian Multipole features of atomic systems
pyhf: pure-Python implementation of HistFactory statistical models
Habfuzz: A tool to calculate the instream hydraulic habitat suitability using fuzzy logic and fuzzy Bayesian inference
MolPainter: A Tool for Painting and Solvating Layered Molecular Systems
GeoBO: Python package for Multi-Objective Bayesian Optimisation and Joint Inversion in Geosciences
catwoman: A transit modelling Python package for asymmetric light curves
SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit
diman: A Clojure Package for Dimensional Analysis
Phobos: A tool for creating complex robot models
Python Implementation of Codon Adaptation Index
MODULO: A Python toolbox for data-driven modal decomposition
Scientific Computational Imaging Code (SCICO)
hIPPYlib: An Extensible Software Framework for Large-Scale Inverse Problems
Fitspy: A Python package for spectral decomposition
KADE: A desktop application for Q methodology
Surfaxe: Systematic surface calculations
The Babelizer: language interoperability for model coupling in the geosciences
PathSim - A System Simulation Framework
PyFPT: A Python package for first-passage times
bmiptools: BioMaterials Image Processing Tools
basilisk: a Bioconductor package for managing Python environments
FRIEDA: Flexible Robust Intelligent Elastic Data Management Framework
tidygeocoder: An R package for geocoding
orbitize! v3: Orbit fitting for the High-contrast Imaging Community
Optlang: An algebraic modeling language for mathematical optimization
PyPortfolioOpt: portfolio optimization in Python
ALVA: An adaptive MATLAB package for layered viscoelastic analysis
GemGIS - Spatial Data Processing for Geomodeling
UMAP: Uniform Manifold Approximation and Projection
skipTrack: An R package for Identifying Skips in Self-Tracked Mobile Menstrual Cycle Data
stimupy: A Python package for creating stimuli in vision science
Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design
fieldcompare: A Python package for regression testing simulation results
giotto-deep: A Python Package for Topological Deep Learning
countrycode: An R package to convert country names and country codes
SLEPLET: Slepian Scale-Discretised Wavelets in Python
The Glasgow Fortran Source-to-Source Compiler
PXO (Poly-XTAL Operations): MATLAB Codebase to Generate, Analyse and Export Complex 2D Spatio-Temporally Gradient Grain Structures
Pymer4: Connecting R and Python for Linear Mixed Modeling
pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics
Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud
nimbleHMC: An R package for Hamiltonian Monte Carlo sampling in nimble
RL: Generic reinforcement learning codebase in TensorFlow
ElGateau: A Library for Using the Elgato Stream Deck for Experimental Psychology Research
Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB
iheatmapr: Interactive complex heatmaps in R
Reiz: Structural Source Code Search
LISC: A Python Package for Scientific Literature Collection and Analysis
PyArabic: A Python package for Arabic text
netrankr: An R package for total, partial, and probabilistic rankings in networks
PressureDrop.jl: Pressure traverses and gas lift analysis for oil & gas wells
Katsu: A Python package for Mueller and Stokes simulation and polarimetry
SurfinPy 2.0: A Phase Diagram Generator for Surfaces and Bulk Phases
TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia
osmdata
perccalc: An R package for estimating percentiles from categorical variables
kiwiPy: Robust, high-volume, messaging for big-data and computational science workflows
DORiE: A Discontinuous Galerkin Solver for Soil Water Flow and Passive Solute Transport Based on DUNE
AniSOAP: Machine Learning Representations for Coarse-grained and Non-spherical Systems
LIBSsa: an open source software for analyzing LIBS spectra
autoStreamTree: Genomic variant data fitted to geospatial networks
GluPredKit: A Python Package for Blood Glucose Prediction and Evaluation
spatPomp: An R package for spatiotemporal partially observed Markov process models
hilbertmodgroup: Reduction algorithms and framework for Hilbert Modular Groups
PyLithics: A Python package for stone tool analysis
DARTS: The Data Analysis Remote Treatment Service
'nrCascadeSim' - A simulation tool for nuclear recoil cascades resulting from neutron capture
PyThia: A Python package for Uncertainty Quantification based on non-intrusive polynomial chaos expansions
FlexWing-ROM: A matlab framework for data-driven reduced-order modeling of flexible wings
model-traits: Model attribute definitions for scientific simulations in C++
SpecialFunctions: A C# package of special functions for scientific computing with MATLAB-compatible API
bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data
densify: An R package to reduce empty cells in data frames of typological linguistic data
Imagedata: A Python library to handle medical image data in NumPy array subclass Series
Phylen: automatic phylogenetic reconstruction using the EggNOG database
OceanBioME.jl: A flexible environment for modelling the coupled interactions between ocean biogeochemistry and physics
DynamicalSystems.jl: A Julia software library for chaos and nonlinear dynamics
BifacialSimu: Holistic Simulation of large-scale Bifacial Photovoltaic Systems
LibSWIFFT - A fast C/C++ Library for the SWIFFT Secure Homomorphic Hash Function
GRDzhadzha: A code for evolving relativistic matter on analytic metric backgrounds
CoReCon: an open, community-powered collection of Reionization constraints
PyAFBF: a Python library for sampling image textures from the anisotropic fractional Brownian field
ACHR.cu: GPU accelerated sampling of metabolic networks
cofad: An R package and shiny app for contrast analysis
Utopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systems
CWInPy: A Python package for inference with continuous gravitational-wave signals from pulsars
Soundata: Reproducible use of audio datasets
Simmate: a framework for materials science
virtualNicheR: generating virtual fundamental and realised niches for use in virtual ecology experiments
MFEM/MGIS, a HPC mini-application targeting nonlinear thermo-mechanical simulations of nuclear fuels at mesoscale
hawen: time-harmonic wave modeling and inversion using hybridizable discontinuous Galerkin discretization
chemotools: A Python Package that Integrates Chemometrics and scikit-learn
A Java Library for Itemset Mining with Choco-solver
pyMannKendall: a python package for non parametric Mann Kendall family of trend tests
3D Line Radiative Transfer & Synthetic Observations with Magritte
The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing
osfr: An R Interface to the Open Science Framework
Spafe: Simplified python audio features extraction
The DynaGUI package
PyAutoCTI: Open-Source Charge Transfer Inefficiency Calibration
Autosubmit GUI: A Javascript-based Graphical User Interface to Monitor Experiments Workflow Execution
Rescal-snow: Simulating snow dunes with cellular automata
PyKoopman: A Python Package for Data-Driven Approximation of the Koopman Operator
DMStag: Staggered, Structured Grids for PETSc
pivmet: an R package proposing pivotal methods for consensus clustering and mixture modelling
bsym: A basic symmetry module
sbpy: A Python module for small-body planetary astronomy
Scikit-Longitudinal: A Machine Learning Library for Longitudinal Classification in Python
MorphoPy: A python package for feature extraction of neural morphologies
opty: Software for trajectory optimization and parameter identification using direct collocation
Ginkgo: A high performance numerical linear algebra library
GEOS: A performance portable multi-physics simulation framework for subsurface applications
checkr: An R package for Assertive Programming
RENT: A Python Package for Repeated Elastic Net Feature Selection
SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs
ldaPrototype: A method in R to get a Prototype of multiple Latent Dirichlet Allocations
RidePy: A fast and modular framework for simulating ridepooling systems
Osier: A Python package for multi-objective energy system optimization
Mayawaves: Python Library for Interacting with the Einstein Toolkit and the MAYA Catalog
Open-Unmix - A Reference Implementation for Music Source Separation
PerMetrics: A Framework of Performance Metrics for Machine Learning Models
PhysioLabXR: A Python Platform for Real-Time, Multi-modal, Brain-Computer Interfaces and Extended Reality Experiments
Water Systems Integrated Modelling framework, WSIMOD: A Python package for integrated modelling of water quality and quantity across the water cycle
PhotonWeave
EdgeVPN.io: Seamless Software-defined Layer 2 Virtual Networking for Edge Computing
LobsterPy: A package to automatically analyze LOBSTER runs
electiondata: a Python package for consolidating, checking, analyzing, visualizing and exporting election results
AutoRA: Automated Research Assistant for Closed-Loop Empirical Research
rtdpy: A python package for residence time distributions
TorchMetrics - Measuring Reproducibility in PyTorch
Mantik: A Workflow Platform for the Development of Artificial Intelligence on High-Performance Computing Infrastructures
qualtRics: retrieve survey data using the Qualtrics API
PAM: Population Activity Modeller
mei-friend: An Interactive Web-based Editor for Digital Music Encodings
Hypercomplex: abstract & fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras