yusuke1997/dblp-id-title huggingface dataset:
Twin Removal in Genetic Algorithms for Protein Structure Prediction Using Low-Resolution Model
LGCDA: Predicting CircRNA-Disease Association Based on Fusion of Local and Global Features
Calculating the Expected Time to Eradicate HIV-1 Using a Markov Chain
Predict MiRNA-Disease Associations Using a Variant of Deep Forest Model and Improving Feature Vectors by Graph Convolutional Network
Finding lncRNA-Protein Interactions Based on Deep Learning With Dual-Net Neural Architecture
Accuracy Assessment of Diploid Consensus Sequences
Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images
ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks
Identifying lncRNA and mRNA Co-Expression Modules from Matched Expression Data in Ovarian Cancer
PRFold-TNN: Protein Fold Recognition With an Ensemble Feature Selection Method Using PageRank Algorithm Based on Transformer
AADB: A Manually Collected Database for Combinations of Antibiotics With Adjuvants
Analytical Solution of Steady-State Equations for Chemical Reaction Networks with Bilinear Rate Laws
Geometry-Augmented Molecular Representation Learning for Property Prediction
Deep Probabilistic Matrix Factorization on Graphs: Application to Drug Repositioning in Antimicrobial Resistance
A New Unsupervised Feature Ranking Method for Gene Expression Data Based on Consensus Affinity
Sparse Reconstruction of Glucose Fluxes Using Continuous Glucose Monitors
Heuristic Reusable Dynamic Programming: Efficient Updates of Local Sequence Alignment
TeaTFactor: A Prediction Tool for Tea Plant Transcription Factors Based on BERT
ChromStruct 4: A Python Code to Estimate the Chromatin Structure from Hi-C Data
Heuristics for Genome Rearrangement Distance With Replicated Genes
CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data
Microarray Time Course Experiments: Finding Profiles
Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation
TSVM: Transfer Support Vector Machine for Predicting MPRA Validated Regulatory Variants
Fast Exact Algorithms for the Closest String and Substring Problems with Application to the Planted (L, d)-Motif Model
A Multiview Clustering Method With Low-Rank and Sparsity Constraints for Cancer Subtyping
Optimising Boolean Synthetic Regulatory Networks to Control Cell States
Bases of Motifs for Generating Repeated Patterns with Wild Cards
Accurate Prediction of Human Essential Proteins Using Ensemble Deep Learning
Transcription Factor Binding Site Prediction Using CnNet Approach
QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization
Alignment-Free Sequence Comparison With Multiple k Values
A Memristive Circuit Implementation of Eyes State Detection in Fatigue Driving Based on Biological Long Short-Term Memory Rule
Hybridization in Nonbinary Trees
Class Balanced Multifactor Dimensionality Reduction to Detect Gene-Gene Interactions
Novel Antimicrobial Peptide Design Using Motif Match Score Representation
HybAVPnet: A Novel Hybrid Network Architecture for Antiviral Peptides Prediction
Improving Identification of Key Players in Aging via Network De-Noising and Core Inference
Multimodal-Boost: Multimodal Medical Image Super-Resolution Using Multi-Attention Network With Wavelet Transform
Transfer Learning With BioBERT Embeddings for lncRNA-Disease Association Prediction
LSTM-Based End-to-End Framework for Biomedical Event Extraction
Improved Algorithms for Matching r-Separated Sets with Applications to Protein Structure Alignment
Identification of Gene Networks with Time Delayed Regulation Based on Temporal Expression Profiles
Mining Contiguous Sequential Generators in Biological Sequences
Prediction of ncRNA-Disease Association Based on Correntropy Induced Loss Matrix Factorization Model
Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network
Prediction of HIV Drug Resistance by Combining Sequence and Structural Properties
Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information
ENLIGHTENMENT: A Scalable Annotated Database of Genomics and NGS-Based Nucleotide Level Profiles
Orienting Conflicted Graph Edges Using Genetic Algorithms to Discover Pathways in Protein-Protein Interaction Networks
Identifying Sigma70 Promoters with Novel Pseudo Nucleotide Composition
Heuristics for the Reversal and Transposition Distance Problem
Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods
BFMDDT: A Decision-Tree-Based Gene Regulatory Network Inference From Multi-Type Datasets
Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods
EIC Farewell and New EIC Introduction
Supervised Graph Clustering for Cancer Subtyping Based on Survival Analysis and Integration of Multi-Omic Tumor Data
Significance and Functional Similarity for Identification of Disease Genes
MSF-LRR: Multi-Similarity Information Fusion Through Low-Rank Representation to Predict Disease-Associated Microbes
Extraction of Individual Filaments from 2D Confocal Microscopy Images of Flat Cells
Characterizing the Topology of Probabilistic Biological Networks
Connecting Different Approaches for Cell Cycle Modeling: Learning Ordinary Differential Equations from Individual-Based Models
Multi-Task Learning and Sparse Discriminant Canonical Correlation Analysis for Identification of Diagnosis-Specific Genotype-Phenotype Association
Transferring From Textual Entailment to Biomedical Named Entity Recognition
LKLPDA: A Low-Rank Fast Kernel Learning Approach for Predicting piRNA-Disease Associations
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition
IAS: Interaction Specific GO Term Associations for Predicting Protein-Protein Interaction Networks
A Resolution of the Static Formulation Question for the Problem of Computing the History Bound
Use of Electronic Health Data for Disease Prediction: A Comprehensive Literature Review
Multiple 3D RNA Structure Superposition Using Neighbor Joining
GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units
Perfect phylogenies via the Minimum Uncovering Branching Problem: Efficiently Solvable Cases
United Complex Centrality for Identification of Essential Proteins from PPI Networks
ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data
Gene Selection Using Locality Sensitive Laplacian Score
Dimension Reduction-Based Penalized Logistic Regression for Cancer Classification Using Microarray Data
Special Section on Swarm-Based Algorithms and Applications in Computational Biology and Bioinformatics
Multivariate Optimization of k for k-Nearest-Neighbor Feature Selection With Dichotomous Outcomes: Complex Associations, Class Imbalance, and Application to RNA-Seq in Major Depressive Disorder
A Two-Phase Bio-NER System Based on Integrated Classifiers and Multiagent Strategy
Network-Based Drug-Target Interaction Prediction with Probabilistic Soft Logic
A Parametric Targetability Evaluation Approach for Vitiligo Proteome Extracted through Integration of Gene Ontologies and Protein Interaction Topologies
Querying Representative and Informative Super-Pixels for Filament Segmentation in Bioimages
RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow
Statistical Analysis of RNA Backbone
Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources
Reduced False Positives in PDZ Binding Prediction Using Sequence and Structural Descriptors
Phenotype Prediction from Metagenomic Data Using Clustering and Assembly with Multiple Instance Learning (CAMIL)
Modeling Variability in Populations of Cells Using Approximated Multivariate Distributions
An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae
ISLMI: Predicting lncRNA-miRNA Interactions Based on Information Injection and Second-Order Graph Convolution Network
PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data
De novo Protein Structure Prediction by Coupling Contact With Distance Profile
SuperMIC: Analyzing Large Biological Datasets in Bioinformatics with Maximal Information Coefficient
High Performance Computational Systems Biology
On Efficient Feature Ranking Methods for High-Throughput Data Analysis
Enhancement of Convolutional Neural Network for Protein-Protein Interaction Prediction Using Sequence Feature Extension
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
Immunological Approach for Full NURBS Reconstruction of Outline Curves from Noisy Data Points in Medical Imaging
The Receiver Operational Characteristic for Binary Classification with Multiple Indices and Its Application to the Neuroimaging Study of Alzheimer's Disease
The Propagation Approach for Computing Biochemical Reaction Networks
Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes
Applications of Transductive Spectral Clustering Methods in a Military Medical Concussion Database
COSPEDTree: COuplet Supertree by Equivalence Partitioning of Taxa Set and DAG Formation
DeePromClass: Delineator for Eukaryotic Core Promoters Employing Deep Neural Networks
A Pipeline for Integrated Theory and Data-Driven Modeling of Biomedical Data
Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron
Learning Scoring Schemes for Sequence Alignment from Partial Examples
Bidirectional Long Short-Term Memory Networks for Predicting the Subcellular Localization of Eukaryotic Proteins
Combining Supervised and Unsupervised Learning for Improved miRNA Target Prediction
How Little Do We Actually Know? On the Size of Gene Regulatory Networks
Two New Heuristic Methods for Protein Model Quality Assessment
The Use of Informed Priors in Biclustering of Gene Expression with the Hierarchical Dirichlet Process
Simultaneous Identification of Duplications, Losses, and Lateral Gene Transfers
ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy
SCAMPER: Accurate Type-Specific Prediction of Calcium-Binding Residues Using Sequence-Derived Features
Altering Indispensable Proteins in Controlling Directed Human Protein Interaction Network
Identifying Protein Complexes From Protein-Protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information
Learning Transferable Driven and Drone Assisted Sustainable and Robust Regional Disease Surveillance for Smart Healthcare
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm
Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations
The Identifiability of Covarion Models in Phylogenetics
Automatic Detection of Large Dense-Core Vesicles in Secretory Cells and Statistical Analysis of Their Intracellular Distribution
scENT for Revealing Gene Clusters From Single-Cell RNA-Seq Data
Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics
Hierarchical Probabilistic Interaction Modeling for Multiple Gene Expression Replicates
Partition Based Algorithms for Rearrangement Distances With Flexible Intergenic Regions
DAPD: A Knowledgebase for Diabetes Associated Proteins
Linear Time Reconciliation With Bounded Transfers of Genes
Detection of Replication Origin Sites in Herpesvirus Genomes by Clustering and Scoring of Palindromes with Quadratic Entropy Measures
Scalable and Maintainable Distributed Sequence Alignment Using Spark
Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect
Unicyclic Networks: Compatibility and Enumeration
Boundary-Aware Dual Biaffine Model for Sequential Sentence Classification in Biomedical Documents
Three-Dimensional Path Planning for Uninhabited Combat Aerial Vehicle Based on Predator-Prey Pigeon-Inspired Optimization in Dynamic Environment
PRKN Gene Introns in Families From Order Primates Show Common Open Reading Frames
DHNLDA: A Novel Deep Hierarchical Network Based Method for Predicting lncRNA-Disease Associations
Enhancing Molecular Contrastive Prediction by Recognizing Metric Distribution Separation
Temporal Logics for Phylogenetic Analysis via Model Checking
Ensemble Deep Random Vector Functional Link Network Using Privileged Information for Alzheimer's Disease Diagnosis
Multiclass Cancer Classification Using Semisupervised Ellipsoid ARTMAP and Particle Swarm Optimization with Gene Expression Data
Determining Semantically Related Significant Genes
SENIES: DNA Shape Enhanced Two-Layer Deep Learning Predictor for the Identification of Enhancers and Their Strength
Searching Genomes for Noncoding RNA Using FastR
Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites
DDI Prediction With Heterogeneous Information Network - Meta-Path Based Approach
ABPDB: A Database of Antibacterial Peptides
Information-Theoretic Model of Evolution over Protein Communication Channel
A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation
ASFold-DNN: Protein Fold Recognition Based on Evolutionary Features With Variable Parameters Using Full Connected Neural Network
Self Supervised Prediction of Genetic Associations in Comorbid Diseases With Masked Autoencoder Using Hypergraph Representations
Statistical Analysis of Microarray Data Clustering using NMF, Spectral Clustering, Kmeans, and GMM
A Semi-Supervised Learning Method for MiRNA-Disease Association Prediction Based on Variational Autoencoder
Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference
Faster Exact Computation of rSPR Distance via Better Approximation
Efficient Inference of Spatially-Varying Gaussian Markov Random Fields With Applications in Gene Regulatory Networks
Outlier Analysis and Top Scoring Pairfor Integrated Data Analysisand Biomarker Discovery
Recursive Mahalanobis Separability Measure for Gene Subset Selection
Effect of Aggregation Operators on Network-Based Disease Gene Prioritization: A Case Study on Blood Disorders
A Refined 3-in-1 Fused Protein Similarity Measure: Application in Threshold-Free Hub Detection
Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana
Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
Optimal Bayesian Transfer Learning for Count Data
Protein Function Prediction withIncomplete Annotations
BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model
Enhancing Antimicrobial Peptide Function Prediction via Knowledge Transfer on Protein Language Models
On Nakhleh's Metric for Reduced Phylogenetic Networks
Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics
Reassortment Networks for Investigating the Evolution of Segmented Viruses
Deep Robust Framework for Protein Function Prediction Using Variable-Length Protein Sequences
A Novel Biologically and Psychologically Inspired Fuzzy Decision Support System: Hierarchical Complementary Learning
Outgoing EIC Editorial for this Special Section of TCBB with the Theme of Phylogenetics
Spatio-Temporal Analysis of Constitutive Exocytosis in Epithelial Cells
Biclustering Models for Structured Microarray Data
A Multi-State Optimization Framework for Parameter Estimation in Biological Systems
A Low Dimensional Approximation For Competence In Bacillus Subtilis
Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions
AN-IHP: Incompatible Herb Pairs Prediction by Attention Networks
Prediction of Cancer Class with Majority Voting Genetic Programming Classifier Using Gene Expression Data
Identifying Gene Signatures for Cancer Drug Repositioning Based on Sample Clustering
RENNSH: A Novel ά-Helix Identification Approach for Intermediate Resolution Electron Density Maps
ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution
Quantitative Measurement of Split of the Second Heart Sound (S2)
Constructing and Drawing Regular Planar Split Networks
Putative Drug and Vaccine Target Identification in Leishmania donovani Membrane Proteins Using Naïve Bayes Probabilistic Classifier
Time-Aware Missing Healthcare Data Prediction Based on ARIMA Model
Self-Attention Based Neural Network for Predicting RNA-Protein Binding Sites
DALIX: Optimal DALI Protein Structure Alignment
Trimming Gene Deletion Strategies for Growth-Coupled Production in Constraint-Based Metabolic Networks: TrimGdel
Automated Cell Tracking Using Motion Prediction-Based Matching and Event Handling
FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data
Prediction of Essential Genes in Comparison States Using Machine Learning
Detecting Protein Complexes Basedon Uncertain Graph Model
SGDA: Towards 3-D Universal Pulmonary Nodule Detection via Slice Grouped Domain Attention
GENESHIFT: A Nonparametric Approach for Integrating Microarray Gene Expression Data Based on the Inner Product as a Distance Measure between the Distributions of Genes
NIMCE: A Gene Regulatory Network Inference Approach Based on Multi Time Delays Causal Entropy
Visual Exploration across Biomedical Databases
Model Reduction of Multiscale Chemical Langevin Equations: A Numerical Case Study
Pathogenicity Prediction of Single Amino Acid Variants With Machine Learning Model Based on Protein Structural Energies
Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform
NetWalkRank: Cancer Driver Gene Prioritization in Multiplex Gene Regulatory Networks by a Random Walk Approach
Discovering Genetic Variants in Hypertrophic Cardiomyopathy With Multiple Machine Learning Techniques
Porting and Optimizing BWA-MEM2 Using the Fujitsu A64FX Processor
Genomic Machine Learning Meta-regression: Insights on Associations of Study Features With Reported Model Performance
A Simplified Description of Child Tables for Sequence Similarity Search
Towards Optimal Decomposition of Boolean Networks
Use Chou's 5-Steps Rule With Different Word Embedding Types to Boost Performance of Electron Transport Protein Prediction Model
An Effective Biclustering-Based Framework for Identifying Cell Subpopulations From scRNA-seq Data
Evolutionary Optimization of Kernel Weights Improves Protein Complex Comembership Prediction
Deep Learning Benchmarks on L1000 Gene Expression Data
Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields
A Property-Driven Methodology for Formal Analysis of Synthetic Biology Systems
AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism
Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites
Xsurvey: Web Tool to Query the Set of Homorepeats of all Reference Proteomes
Pareto Optimality in Organelle Energy Metabolism Analysis
Qualitative Reasoning for Biological Network Inference from Systematic Perturbation Experiments
MOTHER-DB: A Database for Sharing Nonhuman Ovarian Histology Images
Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases
SeedHit: A GPU Friendly Pre-Align Filtering Algorithm
Global Alignment of Protein-Protein Interaction Networks: A Survey
BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data
Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning
FHAST: FPGA-Based Acceleration of Bowtie in Hardware
Hierarchical Structured Component Analysis for Microbiome Data Using Taxonomy Assignments
SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing
Guest Editorial for Selected Papers From BIOKDD 2021
RRAC: Role based reputed access control method for mitigating malicious impact in intelligent IoT platforms
A privacy-preserving mutual authentication scheme for group communication in VANET
OverCourt: DDoS mitigation through credit-based traffic segregation and path migration
Traffic modelling of asynchronous bufferless optical packet switched networks
Beacon-based channel assignment and jammer mitigation for MANETs with multiple interfaces and multiple channels
Gateway performance analysis in interconnected networks
Cascaded fault detection system of error back-propagation network based on node association degree
Mobility in pedestrian communication simulations: Impact of microscopic models and solutions for integration
Advanced communications technologies and services
Semi-Markov performance model of CSMA/CD networks
Measuring and modeling the BitTorrent content distribution system
ADoCSI: towards a transparent mechanism for disseminating Certificate Status Information
Open distributed processing: an architectural basis for information networks
IEEE 802.21-based seamless multicast streaming with dynamic playback control
Balancing intrusion detection resources in ubiquitous computing networks
Backup VP planning for multicast connections in ATM networks
SOS-WS Host Shield: A sketch-based Service Oriented Shield against web application business layer IDS attacks
A review of DoS attack models for 3G cellular networks from a system-design perspective
Construction of super-resolution model of remote sensing image based on deep convolutional neural network
Real-time PON signaling for emerging low-latency applications
A review on P4-Programmable data planes: Architecture, research efforts, and future directions
TeraNet: a multi-gigabits per second ATM network
The case for interdomain dynamic QoS-based service negotiation in the internet
Cooperative routing with video complexity for heterogeneous motion-level streaming
Considerations on the OSI Reliable Transfer Service
Multi-objective task offloading for highly dynamic heterogeneous Vehicular Edge Computing: An efficient reinforcement learning approach
Hierarchical multidimensional search in peer-to-peer networks
Secrecy performance analysis of amplify-and-forward relay cooperative networks with simultaneous wireless information and power transfer
Optimal non-identical sensing setting for multi channels in cognitive radio networks
URLLC in UAV-enabled multicasting systems: A dual time and energy minimization problem using UAV speed, altitude and beamwidth
Effects of node processing time on optimal load balancing in tree hierarchy network configurations
Performance improvement in satellite image classification using adaptive supervised multi-resolution approach
Architecture for distributed multimedia database systems
Office automation - reflections from the marketplace
Optimal scheduling in multi-server queues with random connectivity and retransmissions
Imola: A decentralised learning-driven protocol for multi-hop White-Fi
A comparison of centralized and distributed meta-scheduling architectures for computation and communication tasks in Grid networks
Reducing database sizes in implicit deregistration for personal communication networks
Adapting caching to audience retention rate
KeyClass: Efficient keyword matching for network traffic classification
MDTA: An efficient, scalable and fast Multiple Disjoint Tree Algorithm for dynamic environments
Multi-agent deep reinforcement learning-based partial offloading and resource allocation in vehicular edge computing networks
A measurement-based call admission control scheme for ATM networks based on the diffusion approximation
Providing a CoAP-based technique to get wireless sensor data via IoT gateway
Optimization of collaborative resource allocation for mobile edge computing
An improving approach to analyzing change impact of C programs
Computer communications and the airlines
Deployment and optimization of wireless network node deployment and optimization in smart cities
RelM: reliable multicast for mobile networks