yusuke1997/dblp-id-title huggingface dataset:
Clinical research text summarization method based on fusion of domain knowledge
Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning
Predictive models of aging of the human eye based on ocular anterior segment morphology
Adverse drug event detection using reason assignments in FDA drug labels
Identification of Homo sapiens cancer classes based on fusion of hidden gene features
The clinician in the driver's seat: Part 2 - Intelligent uses of space in a drag/drop user-composable electronic health record
Methods for development and application of data standards in an ontology-driven information model for measuring, managing, and computing social determinants of health for individuals, households, and communities evaluated through an example of asthma
Corrigendum to "Theory of trust and acceptance of artificial intelligence technology (TrAAIT): An instrument to assess clinician trust and acceptance of artificial intelligence" [J. Biomed. Inform. 148 (2023) 104550]
Estimation of epistasis among finite polygenic loci for complex traits with a mixed model using Gibbs sampling
An efficient reachability query based pruning algorithm in e-health scenario
Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains
An hybrid ECG-based deep network for the early identification of high-risk to major cardiovascular events for hypertension patients
Paving the COWpath: Learning and visualizing clinical pathways from electronic health record data
CPOE and the facilitation of medication errors
Adapting electronic health records-derived phenotypes to claims data: Lessons learned in using limited clinical data for phenotyping
Operationalization of the UFuRT methodology for usability analysis in the clinical research data management domain
Temporal biomedical data analytics
A kernel-based clustering method for gene selection with gene expression data
Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles
Validating EHR clinical models using ontology patterns
Self-Learning Fuzzy Control with Temporal Knowledge for Atracurium-Induced Neuromuscular Block during Surgery
Drug repurposing for glioblastoma based on molecular subtypes
Participant flow diagrams for health equity in AI
Implementation of a user-centered framework in the development of a web-based health information database and call center
OBO to UML: Support for the development of conceptual models in the biomedical domain
Hemojuvelin-hepcidin axis modeled and analyzed using Petri nets
Endpoint prediction of heart failure using electronic health records
Long-term prediction for temporal propagation of seasonal influenza using Transformer-based model
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project
Skin lesion classification with ensembles of deep convolutional neural networks
A combined modelling of fuzzy logic and Time-Driven Activity-based Costing (TDABC) for hospital services costing under uncertainty
A drug molecular classification model based on graph structure generation
Structural methodologies for auditing SNOMED
Longitudinal K-means approaches to clustering and analyzing EHR opioid use trajectories for clinical subtypes
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record?
Prognostic Bayesian networks: I: Rationale, learning procedure, and clinical use
Enhancing narrative clinical guidance with computer-readable artifacts: Authoring FHIR implementation guides based on WHO recommendations
Trans-Balance: Reducing demographic disparity for prediction models in the presence of class imbalance
A self-supervised learning-based approach to clustering multivariate time-series data with missing values (SLAC-Time): An application to TBI phenotyping
Theoretical Study of Inspiratory Flow Waveforms during Mechanical Ventilation on Pulmonary Blood Flow and Gas Exchange
Supervised Relevance-Redundancy assessments for feature selection in omics-based classification scenarios
Electronic health record acceptance by physicians: Testing an integrated theoretical model
Diagnosis of COVID-19 via acoustic analysis and artificial intelligence by monitoring breath sounds on smartphones
System engineering approach to documentation: An evaluation of the documentation process in a gastroenterology laboratory
Leveraging semantic labels for multi-level abstraction in medical process mining and trace comparison
An approach for deciphering patient-specific variations with application to breast cancer molecular expression profiles
A cross-lingual approach to automatic ICD-10 coding of death certificates by exploring machine translation
The MISCAN-COLON Simulation Model for the Evaluation of Colorectal Cancer Screening
Machine learning enabled identification of potential SARS-CoV-2 3CLpro inhibitors based on fixed molecular fingerprints and Graph-CNN neural representations
Normalized impact factor (NIF): An adjusted method for calculating the citation rate of biomedical journals
MAGNETO: Cell type marker panel generator from single-cell transcriptomic data
How cytokines co-occur across asthma patients: From bipartite network analysis to a molecular-based classification
OmniPHR: A distributed architecture model to integrate personal health records
Colorado Care Tablet: The design of an interoperable Personal Health Application to help older adults with multimorbidity manage their medications
Adaptable graph neural networks design to support generalizability for clinical event prediction
Secondary use of clinical data: The Vanderbilt approach
A graph neural network explainability strategy driven by key subgraph connectivity
A methodology of phenotyping ICU patients from EHR data: High-fidelity, personalized, and interpretable phenotypes estimation
Incorporating repeating temporal association rules in Naïve Bayes classifiers for coronary heart disease diagnosis
Leveraging Multi-source knowledge for Chinese clinical named entity recognition via relational graph convolutional network
Information handoffs in critical care and their implications for information quality: A socio-technical network approach
Implementation of specialised attention mechanisms: ICD-10 classification of Gastrointestinal discharge summaries in English, Spanish and Swedish
Response to ''Validating discovery in literature-based discovery"
Using chief complaints for syndromic surveillance: A review of chief complaint based classifiers in North America
Prediction of cis/trans isomerization using feature selection and support vector machines
Biomedical named entity normalization via interaction-based synonym marginalization
A method for detecting and characterizing outbreaks of infectious disease from clinical reports
Towards probabilistic decision support in public health practice: Predicting recent transmission of tuberculosis from patient attributes
ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports
Prognostics of surgical site infections using dynamic health data
Development and evaluation of an ontology for guiding appropriate antibiotic prescribing
Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine
Incorporating dictionaries into deep neural networks for the Chinese clinical named entity recognition
Sequential data mining of infection patterns as predictors for onset of type 1 diabetes in genetically at-risk individuals
Rapid review: Growing usage of Multimodal Large Language Models in healthcare
Using ontology-based semantic similarity to facilitate the article screening process for systematic reviews
Multi-modal interactive fusion method for detecting teenagers' psychological stress
Bioinformatics and biological reality
Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use
Cognitive informatics methods for interactive clinical systems
A compartment modeling approach to reconstruct and analyze gender and age-grouped CoViD-19 Italian data for decision-making strategies
Ontology-centric integration and navigation of the dengue literature
Computer-Assisted Decision Support System in Pulmonary Cancer detection and stage classification on CT images
miR2Pathway: A novel analytical method to discover MicroRNA-mediated dysregulated pathways involved in hepatocellular carcinoma
Multiple ant colony algorithm method for selecting tag SNPs
Evaluating large language models for information extraction from gastroscopy and colonoscopy reports through multi-strategy prompting
Clinical notes: An untapped opportunity for improving risk prediction for hospitalization and emergency department visit during home health care
Towards a Personal Health Management Assistant
Mutual information-based template matching scheme for detection of breast masses: From mammography to digital breast tomosynthesis
Dynamic graph and polynomial chaos based models for contact tracing data analysis and optimal testing prescription
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology
Benzodiazepines use and breast cancer risk: A population-based study and gene expression profiling evidence
An empirical analysis of ontology reuse in BioPortal
Graph-based clinical recommender: Predicting specialists procedure orders using graph representation learning
Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles
A deep learning approach for inpatient length of stay and mortality prediction
Augmenting cancer cell proteomics with cellular images - A semantic approach to understand focal adhesion
NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information
CombiTool - A New Computer Program for Analyzing Combination Experiments with Biologically Active Agents
Offline reinforcement learning for safer blood glucose control in people with type 1 diabetes
Structural network analysis of biological networks for assessment of potential disease model organisms
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research
Machine-learned cluster identification in high-dimensional data
Automatic extension of corpora from the intelligent ensembling of eHealth knowledge discovery systems outputs
Analyzing the performance of a blockchain-based personal health record implementation
Alzheimer's disease diagnosis framework from incomplete multimodal data using convolutional neural networks
FALCON or how to compute measures time efficiently on dynamically evolving dense complex networks?
Using the ResearchEHR platform to facilitate the practical application of the EHR standards
Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets
Logistic regression and artificial neural network classification models: a methodology review
Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms
Toward a Representation Format for Sharable Clinical Guidelines
Toward analyzing and synthesizing previous research in early prediction of cardiac arrest using machine learning based on a multi-layered integrative framework
Query specific graph-based query reformulation using UMLS for clinical information access
CDISC-compliant clinical trial imaging management system with automatic verification and data Transformation: Focusing on tumor response assessment data in clinical trials
Querying large graphs in biomedicine with colored graphs and decomposition
Advancing Italian biomedical information extraction with transformers-based models: Methodological insights and multicenter practical application
A cognitive taxonomy of medical errors
Personalized insulin dose manipulation attack and its detection using interval-based temporal patterns and machine learning algorithms
A hybrid sampling algorithm combining M-SMOTE and ENN based on Random forest for medical imbalanced data
Decision-support systems for managing polypharmacy in the elderly: A scoping review
Assisting radiologists with reporting urgent findings to referring physicians: A machine learning approach to identify cases for prompt communication
Analyzing health insurance claims on different timescales to predict days in hospital
Comparison with manual registration reveals satisfactory completeness and efficiency of a computerized cancer registration system
Active deep learning to detect demographic traits in free-form clinical notes
Detecting adverse events for patient safety research: a review of current methodologies
A text processing pipeline to extract recommendations from radiology reports
Building bridges across electronic health record systems through inferred phenotypic topics
The need for harmonized structured documentation and chances of secondary use - Results of a systematic analysis with automated form comparison for prostate and breast cancer
Insufficient sampling frequencies skew heart rate variability estimates: Implications for extracting heart rate metrics from neuroimaging and physiological data
Towards the first multi-epitope recombinant vaccine against Crimean-Congo hemorrhagic fever virus: A computer-aided vaccine design approach
Multi-Ontology Refined Embeddings (MORE): A hybrid multi-ontology and corpus-based semantic representation model for biomedical concepts
A new pivoting and iterative text detection algorithm for biomedical images
A knowledge base of clinical trial eligibility criteria
Specializing for predicting obesity and its co-morbidities
Ensemble gene selection by grouping for microarray data classification
MedKPL: A heterogeneous knowledge enhanced prompt learning framework for transferable diagnosis
PICO element detection in medical text without metadata: Are first sentences enough?
Mapping high-dimensional data onto a relative distance plane - an exact method for visualizing and characterizing high-dimensional patterns
An automated knowledge-based textual summarization system for longitudinal, multivariate clinical data
SPNsim: A database of simulated solitary pulmonary nodule PET/CT images facilitating computer aided diagnosis
Can-Evo-Ens: Classifier stacking based evolutionary ensemble system for prediction of human breast cancer using amino acid sequences
Augmented reality in robotic assisted orthopaedic surgery: A pilot study
Identifying acute kidney injury subphenotypes using an outcome-driven deep-learning approach
Critical carE Database for Advanced Research (CEDAR): An automated method to support intensive care units with electronic health record data
Extracting adverse drug events from clinical Notes: A systematic review of approaches used
Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping
Scenario-based design: A method for connecting information system design with public health operations and emergency management
Prediction of Blood Glucose Levels in Diabetic Patients Using a Hybrid AI Technique
Comparison of machine learning algorithms for clinical event prediction (risk of coronary heart disease)
Learning bundled care opportunities from electronic medical records
glUCModel: A monitoring and modeling system for chronic diseases applied to diabetes
Evaluating semantic similarity between Chinese biomedical terms through multiple ontologies with score normalization: An initial study
Differential metabolic network construction for personalized medicine: Study of type 2 diabetes mellitus patients' response to gliclazide-modified-release-treated
COMMUTE: Communication-efficient transfer learning for multi-site risk prediction
Improved screening of fall risk using free-living based accelerometer data
Health Systems Science, Susan E. Skochelak, Richard E. Hawkins (Eds.). AMA Education Consortium, Elsevier/Academic Press, Cambridge, MA (2017). 228 pp., ISBN-13: 978-0323461160
The use of model constructs to design collaborative health information technologies: A case study to support child development
Adversarial active learning for the identification of medical concepts and annotation inconsistency
Envisioning the future of 'big data' biomedicine
Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions
Precision Drug Repurposing (PDR): Patient-level modeling and prediction combining foundational knowledge graph with biobank data
Weighted dimensionality reduction and robust Gaussian mixture model based cancer patient subtyping from gene expression data
Improving non-invasive hemoglobin measurement accuracy using nonparametric models
Fuzzy Logic Alternative for Analysis in the Biomedical Sciences
A new methodological framework for hazard detection models in health information technology systems
Mining features for biomedical data using clustering tree ensembles
AutoScore-Survival: Developing interpretable machine learning-based time-to-event scores with right-censored survival data
Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions
Retrieve and rerank for automated ICD coding via Contrastive Learning
Deep learning predicts extreme preterm birth from electronic health records
Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions
Avatar-based simulation in the evaluation of diagnosis and management of mental health disorders in primary care
Limestone: High-throughput candidate phenotype generation via tensor factorization
Formal representation of eligibility criteria: A literature review
Extension of the survival dimensionality reduction algorithm to detect epistasis in competing risks models (SDR-CR)
New gene selection method for multiclass tumor classification by class centroid
A controlled greedy supervised approach for co-reference resolution on clinical text
Utility-preserving privacy protection of textual healthcare documents
FRR: Fair remote retrieval of outsourced private medical records in electronic health networks
Development and validation of a continuous measure of patient condition using the Electronic Medical Record
Analysis of security and privacy challenges for DNA-genomics applications and databases
Topological data analysis in biomedicine: A review
Response score of deep learning for out-of-distribution sample detection of medical images
Computational prediction of drug-drug interactions based on drugs functional similarities
Integrating graph convolutional networks to enhance prompt learning for biomedical relation extraction
Evaluating sentence representations for biomedical text: Methods and experimental results
Prioritization of potential candidate disease genes by topological similarity of protein-protein interaction network and phenotype data
A new framework for identifying combinatorial regulation of transcription factors: A case study of the yeast cell cycle
Identification of pediatric respiratory diseases using a fine-grained diagnosis system
Identifying homogenous patient subgroups using transformer based hierarchical clustering of heterogeneous Mixed-Modality medical data
Employing a user-centered cognitive walkthrough to evaluate a mHealth diabetes self-management application: A case study and beginning method validation
Model-based pathway enrichment analysis applied to the TGF-beta regulation of autophagy in autism
Clinical simulation: A method for development and evaluation of clinical information systems
Measuring the level of activity in community built bio-ontologies
Resource-efficient instruction tuning of large language models for biomedical named entity recognition
Manifold regularized matrix factorization for drug-drug interaction prediction
Development of a FHIR RDF data transformation and validation framework and its evaluation
Evaluation of the key active ingredients of 'Radix Astragali and Rehmanniae Radix Mixture' and related signaling pathways involved in ameliorating diabetic foot ulcers from the perspective of TCM-related theories
Integration of prostate cancer clinical data using an ontology
SD-MSAEs: Promoter recognition in human genome based on deep feature extraction
Disassociation for electronic health record privacy
Emulate randomized clinical trials using heterogeneous treatment effect estimation for personalized treatments: Methodology review and benchmark
Comparative genomics approaches to study organism similarities and differences
Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature
Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts
Modeling nursing interventions in the act class of HL7 RIM Version 3
Multi-view self-attention for interpretable drug-target interaction prediction
A review of causal inference for biomedical informatics
Automatic information extraction from unstructured mammography reports using distributed semantics
Usability in the real world: assessing medical information technologies in patients' homes
Supporting effective health and biomedical information retrieval and navigation: A novel facet view interface evaluation
The ranking of scientists: Computational calculation of Z-score
Occupational exposome: A network-based approach for characterizing Occupational Health Problems
Automated population of an i2b2 clinical data warehouse from an openEHR-based data repository
A distributed framework for health information exchange using smartphone technologies
Characterizing managing physicians by claims sequences in episodes of care
Learning from vertically distributed data across multiple sites: An efficient privacy-preserving algorithm for Cox proportional hazards model with variable selection
Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx)
Random forest swarm optimization-based for heart diseases diagnosis
An Algebraic Solution to Dead Space Determination According to Fowler's Graphical Method
Identifying the essential nodes in network pharmacology based on multilayer network combined with random walk algorithm
Explainable automated coding of clinical notes using hierarchical label-wise attention networks and label embedding initialisation
Pharmaceutical drugs chatter on Online Social Networks
A vision based proposal for classification of normal and abnormal gait using RGB camera
Early diagnosis of Parkinson's disease using Continuous Convolution Network: Handwriting recognition based on off-line hand drawing without template
Clinical decision support: Converging toward an integrated architecture
Automatically identifying gene/protein terms in MEDLINE abstracts
Triple and quadruple optimization for feature selection in cancer biomarker discovery
Ten factors to consider when developing usability scenarios and tasks for health information technology
The application of simulation methods during the COVID-19 pandemic: A scoping review
Harmonized representation learning on dynamic EHR graphs
ARtPM: Article Retrieval for Precision Medicine
Emerging paradigms of cognition in medical decision-making
Common data model for natural language processing based on two existing standard information models: CDA+GrAF
An ontology-based similarity measure for biomedical data - Application to radiology reports
Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach
Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge
Relation mining experiments in the pharmacogenomics domain
Using nurses' natural language entries to build a concept-oriented terminology for patients' chief complaints in the emergency department
Implementation of a Digital Maturity Framework for Biobanking
Hypothesis generation using network structures on community health center cancer-screening performance
Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey
A collaborative medical case authoring environment based on the UMLS
Summarization of clinical information: A conceptual model
Review of tools to support Target Trial Emulation