yusuke1997/dblp-id-title huggingface dataset:
anywidget: reusable widgets for interactive analysis and visualization in computational notebooks
Dark-field X-ray microscopy visualization
fff_segmenter: A signal segmentation script for acoustic FFF fabrication data in MATLAB
AmpTorch: A Python package for scalable fingerprint-based neural network training on multi-element systems with integrated uncertainty quantification
lfda: Local Fisher Discriminant Analysis in R
small_gicp: Efficient and parallel algorithms for point cloud registration
GridapDistributed: a massively parallel finite element toolbox in Julia
RSMTool: collection of tools building and evaluating automated scoring models
carl: a likelihood-free inference toolbox
GoFish: Fishing for Line Observations in Protoplanetary Disks
BoboCEP: a Fault-Tolerant Complex Event Processing Engine for Edge Computing in Internet of Things
performance: An R Package for Assessment, Comparison and Testing of Statistical Models
ClusterValidityIndices.jl: Batch and Incremental Metrics for Unsupervised Learning
TelescopeML - I. An End-to-End Python Package for Interpreting Telescope Datasets through Training Machine Learning Models, Generating Statistical Reports, and Visualizing Results
slap2-utils: Tools for Processing SLAP2 Data
Hytool: an open source matlab toolbox for the interpretation of hydraulic tests using analytical solutions
Underworld3: Mathematically Self-Describing Modelling in Python for Desktop, HPC and Cloud
Improving reproducibility of cheminformatics workflows with chembl-downloader
restez: Create and Query a Local Copy of GenBank in R
cuallee: A Python package for data quality checks across multiple DataFrame APIs
tabula: An R Package for Analysis, Seriation, and Visualization of Archaeological Count Data
gospl: Global Scalable Paleo Landscape Evolution
CheSweet: An application to predict glycan's chemicals shifts
TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning
PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research
SCALib: A Side-Channel Analysis Library
Multi-view-AE: A Python package for multi-view autoencoder models
Ripserer.jl: flexible and efficient persistent homology computation in Julia
PlantSimEngine: A Simulation Engine For The Soil-Plant-Atmosphere System
Reggae: A Parametric Tuner for PBJam, and a Visualization Tool for Red Giant Oscillation Spectra
CapacityExpansion: A capacity expansion modeling framework in Julia
rsudp: A Python package for real-time seismic monitoring with Raspberry Shake instruments
stingray: A modern Python library for spectral timing
FuseMedML: a framework for accelerated discovery in machine learning based biomedicine
py2lispIDyOM: A Python package for the information dynamics of music (IDyOM) model
Starmatrix: Modelling nucleosynthesis of galactic chemical elements
Contextualized: Heterogeneous Modeling Toolbox
GSAreport: Easy to Use Global Sensitivity Reporting
MultiPrecisionArrays.jl: A Julia package for iterative refinement
HallThruster.jl: a Julia package for 1D Hall thruster discharge simulation
A Module for Calibrating Impact Functions in the Climate Risk Modeling Platform CLIMADA
emg3d: A multigrid solver for 3D electromagnetic diffusion
workloopR: Analysis of work loops and other data from muscle physiology experiments in R
pyScienceMode: an Open-Source Python Package to control electro-stimulator through the Hasomed's science mode protocol
policytree: Policy learning via doubly robust empirical welfare maximization over trees
hddtools: Hydrological Data Discovery Tools
EchemFEM: A Firedrake-based Python package for electrochemical transport
HOHQMesh: An All Quadrilateral/Hexahedral Unstructured Mesh Generator for High Order Elements
'NGSTrefftz': Add-on to NGSolve for Trefftz methods
Metagenomic classification with KrakenUniq on low-memory computers
umami: A Python package for Earth surface dynamics objective function construction
PyLogGrid: A Python package for fluid dynamics on logarithmic lattices
Pyrgg: Python Random Graph Generator
ChiRP: Chinese Restaurant Process Mixtures for Regression and Clustering
FijiRelax: Fast and noise-corrected estimation of MRI relaxation maps in 3D + t
maxsmooth: Derivative Constrained Function Fitting
JCOL: A Java package for solving the graph coloring problem
anesthetic: nested sampling visualisation
PyBioPAX: biological pathway exchange in Python
ros_control: A generic and simple control framework for ROS
POSSA: Power simulation for sequential analyses and multiple hypotheses
RBF: An R package to compute a robust backfitting estimator for additive models
sectionproperties: A Python package for the analysis of arbitrary cross-sections using the finite element method
Nyx: A Massively Parallel AMR Code for Computational Cosmology
pygwb: a Python-based library for gravitational-wave background searches
Beiwe: A data collection platform for high-throughput digital phenotyping
pollucheck v1.0: A package to explore open-source air pollution data
EnergyModelsX: Flexible Energy Systems Modelling with Multiple Dispatch
teiphy: A Python Package for Converting TEI XML Collations to NEXUS and Other Formats
The ppmData R-package for setting up spatial point process models
tsp ("Teaspoon"): A library for ground temperature data
Tashaphyne: A Python package for Arabic Light Stemming
ronswanson: Building Table Models for 3ML
Kindel: indel-aware consensus for nucleotide sequence alignments
Multilocus sequence typing by blast from de novo assemblies against PubMLST
Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data
TopologicalNumbers.jl: A Julia package for topological number computation
openmpp: An R package for dynamic microsimulation modeling using OpenM++
MRdataset : A unified and user-friendly interface to medical imaging datasets
mcbette: model comparison using babette
HPX - The C++ Standard Library for Parallelism and Concurrency
HODLRlib: A Library for Hierarchical Matrices
PreliZ: A tool-box for prior elicitation
scene_synthesizer: A Python Library for Procedural Scene Generation in Robot Manipulation
OpenTera: A Framework for Telehealth Applications
PyRolL - An Extensible OpenSource Framework for Rolling Simulation
KielMAT: Kiel Motion Analysis Toolbox - An Open-Source Python Toolbox for Analyzing Neurological Motion Data from Various Recording Modalities
Castor: A C++ library to code "à la Matlab"
SPbLA: The Library of GPGPU-powered Sparse Boolean Linear Algebra Operations
Quilë: C++ genetic algorithms scientific library
smot: a python package and CLI tool for contextual phylogenetic subsampling
terrainr: An R package for creating immersive virtual environments
phyphy: Python package for facilitating the execution and parsing of HyPhy standard analyses
latentcor: An R Package for estimating latent correlations from mixed data types
DPFEHM: a differentiable subsurface physics simulator
Genotify: Fast, lightweight gene lookup and summarization
OPEM : Open Source PEM Cell Simulation Tool
OSMnx: A Python package to work with graph-theoretic OpenStreetMap street networks
LaplaceInterpolation.jl: A Julia package for fast interpolation on a grid
RSeqAn: Headers and wrappers for the SeqAn library in R
Motorcycle: A spectral boundary-integral method for seismic cycles on multiple faults
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format
The jagstargets R package: a reproducible workflow framework for Bayesian data analysis with JAGS
root_numpy: The interface between ROOT and NumPy
Atmospheric Retrievals with petitRADTRANS
SIMIO-continuum: Connecting simulations to ALMA observations
containerit: Generating Dockerfiles for reproducible research with R
simode: R Package for Statistical Inference of Ordinary Differential Equations using Separable Integral-Matching
MSG: A software package for interpolating stellar spectra in pre-calculated grids
xraybinaryorbit: A Python Package for Analyzing Orbital Modulations in X-ray Binaries
BIDSonym: a BIDS App for the pseudo-anonymization of neuroimaging datasets
NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models
Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset XML Dataset
LaMa: a thematic labelling web application
AdaptiveResonance.jl: A Julia Implementation of Adaptive Resonance Theory (ART) Algorithms
21cmSense v2: A modular, open-source 21 cm sensitivity calculator
tidyqwi: A Tidy Approach to Accessing The US Census Bureau's Quarterly Workforce Indicators
HydroMT: Automated and reproducible model building and analysis
PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features
3D reconstruction toolbox for behavior tracked with multiple cameras
Riroriro: Simulating gravitational waves and evaluating their detectability in Python
CycloPhaser: A Python Package for Detecting Extratropical Cyclone Life Cycles
SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage
Physics-Informed Neural networks for Advanced modeling
DTCC Builder: A mesh generator for automatic, efficient, and robust mesh generation for large-scale city modeling and simulation
rrcf: Implementation of the Robust Random Cut Forest algorithm for anomaly detection on streams
h3ppy: An open-source Python package for modelling and fitting H$_3^+$ spectra
Pyglmnet: Python implementation of elastic-net regularized generalized linear models
Tide Model Driver for MATLAB
BioGears: A C++ library for whole body physiology simulations
PyBADS: Fast and robust black-box optimization in Python
Pyinterpolate: Spatial interpolation in Python for point measurements and aggregated datasets
IWOPY: Fraunhofer IWES optimization tools in Python
f3dasm: Framework for Data-Driven Design and Analysis of Structures and Materials
ENASearch: A Python library for interacting with ENA's API
MatD^3^: A Database and Online Presentation Package for Research Data Supporting Materials Discovery, Design, and Dissemination
TsgFEM: Tensegrity Finite Element Method
mitolina: MITOchondrial LINeage Analysis
IFermi: A python library for Fermi surface generation and analysis
py-sc-fermi: self-consistent Fermi energies and defect concentrations from electronic structure calculations
ARDL: An R package for the analysis of level relationships
DiffCapAnalyzer: A Python Package for Quantitative Analysis of Total Differential Capacity Data
Welcome to the Tidyverse
A Short Introduction to PF: A C++ Library for Particle Filtering
PowerAPI: A Python framework for building software-defined power meters
checkpoint_schedules: schedules for incremental checkpointing of adjoint simulations
kalepy: a Python package for kernel density estimation, sampling and plotting
$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications
ugv_nav4d: Advanced Multi-Surface Navigation for Unmanned Ground Vehicles Using 4D Path Planning Techniques
sierra-local: A lightweight standalone application for drug resistance prediction
LDDS: Python package for computing and visualizing Lagrangian Descriptors for Dynamical Systems
Easy SimAuto (ESA): A Python Package that Simplifies Interacting with PowerWorld Simulator
A-SLOTH: Ancient Stars and Local Observables by Tracing Halos
GUESSmyLT: Software to guess the RNA-Seq library type of paired and single end read files
corrp: An R package for multiple correlation-like analysis and clustering in mixed data
Compare Expression Profiles for Pre-defined Gene Groups with C-REx
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences
ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran
BioSigKit: A Matlab Toolbox and Interface for Analysis of BioSignals
New developments in PySDM and PySDM-examples v2: collisional breakup, immersion freezing, dry aerosol initialization, and adaptive time-stepping
Mallob: Scalable SAT Solving On Demand With Decentralized Job Scheduling
APGG - A Modular C++ Framework for Asymmetric Public Goods Games
BioPandas: Working with molecular structures in pandas DataFrames
gemlog: Data Conversion for the Open-Source Gem Infrasound Logger
OpenRepGrid.ic: A software for Interpretive Clustering
OpenSpace: An open-source astrovisualization framework
Hasasia: A Python package for Pulsar Timing Array Sensitivity Curves
tempodisco: an R package for temporal discounting
rowan: A Python package for working with quaternions
pyDeltaRCM: a flexible numerical delta model
SpiDy.jl: open-source Julia package for the study of non-Markovian stochastic dynamics
Open-Source Hypothalamic-ForniX (OSHy-X) Atlases and Segmentation Tool for 3T and 7T
Pyafscgap.org: Open source multi-modal Python-based tools for NOAA AFSC RACE GAP
ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates
SiSyPHE: A Python package for the Simulation of Systems of interacting mean-field Particles with High Efficiency
iced: fast and memory efficient normalization of contact maps
PySymmPol - Symmetric Polynomials
BetterReg: An R package for Useful Regression Statistics
SimSGamE : Scheduling simulator for modern game engines
Syclops: A Modular Pipeline for Procedural Generation of Synthetic Data
Makie.jl: Flexible high-performance data visualization for Julia
bor: An R Package for Transforming Behavioral Observation Records into Data Matrices
imucal - A Python library to calibrate 6 DOF IMUs
Generating synthetic star catalogs from simulated data for next-gen observatories with py-ananke
BAMnostic: an OS-agnostic toolkit for genomic sequence analysis
spopt: a python package for solving spatial optimization problems in PySAL
Prism: Multiple spline regression with regularization, dimensionality reduction, and feature selection
Bruno: A Julia package for simulation, financial asset pricing and delta hedging
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning
libecpint: A C++ library for the efficient evaluation of integrals over effective core potentials
GCM-Filters: A Python Package for Diffusion-based Spatial Filtering of Gridded Data
RESOURCECODE: A Python package for statistical analysis of sea-state hindcast data
SARAS: A general-purpose PDE solver for fluid dynamics
pd-parser: A tool for Matching Photodiode Deflection Events to Time-Stamped Events
ProMCDA: A Python package for Probabilistic Multi-Criteria Decision Analysis
MIRP: A Python package for standardised radiomics
flusight: interactive visualizations for infectious disease forecasts
pybeach: A Python package for extracting the location of dune toes on beach profile transects
The MarINvaders Toolkit
ROCK: digital normalization of whole genome sequencing data
SEEDPOD Ground Risk: A Python application and library for Uncrewed Aerial Systems ground risk analysis and risk-aware path finding
venco.py: A Python model to represent the charging flexibility and vehicle-to-grid potential of electric vehicles in energy system models
PAS: a Python Anesthesia Simulator for drug control
CGC: a Scalable Python Package for Co- and Tri-Clustering of Geodata Cubes
AquaFetch: A Unified Python Interface for Water Resource Dataset Acquisition and Harmonization
pycoxmunk: A python package for computing sea surface reflectance
diwanalr: An R data analysis package for diffusing-wave spectroscopy
AstroPaint: A Python Package for Painting Halo Catalogs into Celestial Maps
Copulas.jl: A fully Distributions.jl-compliant copula package
FIGARO: hierarchical non-parametric inference for population studies
GORILLA: Guiding-center ORbit Integration with Local Linearization Approach
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows
"astrosource": automating optical astronomy measurement, calibration and analysis for variable stellar sources from provided photometry
SymbiotaR2: An R Package for Accessing Symbiota2 Data
ppdiag: Diagnostic Tools for Temporal Point Processes
Simframe: A Python Framework for Scientific Simulations
perfectns: perfect dynamic and standard nested sampling for spherically symmetric likelihoods and priors
baseflow: a MATLAB and GNU Octave package for baseflow recession analysis
ReferenceSeeker: rapid determination of appropriate reference genomes
SICOPOLIS-AD v2: tangent linear and adjoint modeling framework for ice sheet modeling enabled by automatic differentiation tool Tapenade
SAnTex: A Python-based Library for Seismic Anisotropy Calculation
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
atlite: A Lightweight Python Package for Calculating Renewable Power Potentials and Time Series
alignparse: A Python package for parsing complex features from high-throughput long-read sequencing
osiris: An R package to process climate impacts on agricultural yields for the Global Change Analysis Model
COSplay: Contrast Optimized Stimulation Player
widgyts: Custom Jupyter Widgets for Interactive Data Exploration with yt
"Blaster" - a graphical user interface for common sequence analysis tools
Algorithms for SEM-EDS Mineral Dust Classification
State-Averaged Orbital-Optimized VQE: A quantum algorithm for the democratic description of ground and excited electronic states
GENRE (GPU Elastic-Net REgression): A CUDA-Accelerated Package for Massively Parallel Linear Regression with Elastic-Net Regularization
Taweret: a Python package for Bayesian model mixing
pyscses: a PYthon Space-Charge Site-Explicit Solver
sorn: A Python package for Self Organizing Recurrent Neural Network
diverse-seq: an application for alignment-free selecting and clustering biological sequences
archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes
harmonize-wq: Standardize, clean and wrangle Water Quality Portal data into more analytic-ready formats
Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes
rf: Receiver function calculation in seismology
CMinx: A CMake Documentation Generator
SIRITVIS: Social Interaction Research Insights Topic Visualisation
LorenzCycleToolkit: A Comprehensive Python Tool for Analyzing Atmospheric Energy Cycles
Reducing the efforts to create reproducible analysis code with FieldTrip
InspectorCell: Finding Ground Truth in Multiplexed Microscopy Images
AutoPDEx: An Automized Partial Differential Equation solver based on JAX
Pooltool: A Python package for realistic billiards simulation
pyuvdata v3: an interface for astronomical interferometric data sets in Python
OpenCCM: An Open-Source Continuous Compartmental Modelling Package
Spikeometric: Linear Non-Linear Cascade Spiking Neural Networks with Pytorch Geometric
Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data
KALMUS: tools for color analysis of films
Viime: Visualization and Integration of Metabolomics Experiments
Torsional Axisymmetric Core Oscillations Visualiser (TACO-VIS): A Python module for animating torsiona l wave data for fluid planetary cores
Stripy: A Python module for (constrained) triangulation in Cartesian coordinates and on a sphere
Ngesh: a Python library for synthetic phylogenetic data
GGoutlieR: an R package to identify and visualize unusual geo-genetic patterns of biological samples
feign: a Python package to estimate geometric efficiency in passive gamma spectroscopy measurements of nuclear fuel
NuclearToolkit.jl: A Julia package for nuclear structure calculations
Dolphin: A Python package for large-scale InSAR PS/DS processing
btllib: A C++ library with Python interface for efficient genomic sequence processing
SenAOReFoc: A Closed-Loop Sensorbased Adaptive Optics and Remote Focusing Control Software
ELDAM: A Python software for Life Cycle Inventory data management
Surjectors: surjection layers for density estimation with normalizing flows
SMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)
rcites: An R package to access the CITES Speciesplus database
Fireworks: Reproducible Machine Learning and Preprocessing with PyTorch
Mechkit: A continuum mechanics toolkit in Python
CollatriX: A GUI to collate MorphoMetriX outputs
PolytopeWalk: Sparse MCMC Sampling over Polytopes
Temporalis: an open source software for dynamic LCA
fathon: A Python package for a fast computation of detrendend fluctuation analysis and related algorithms
Pandarus: GIS toolkit for regionalized life cycle assessment
tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations
tehtuner: An R package to fit and tune models for the conditional average treatment effect
PARMESAN: Meteorological Timeseries and Turbulence Analysis Backed by Symbolic Mathematics
OGRe: An Object-Oriented General Relativity Package for Mathematica
tesliper: a theoretical spectroscopist's little helper
stacks: Stacked Ensemble Modeling with Tidy Data Principles
pvpumpingsystem: A Python package for modeling and sizing photovoltaic water pumping systems
MG-MAMPOSSt, a Fortran code to test gravity at galaxy-cluster scales
plasticparcels: A python package for marine plastic dispersal simulations and parameterisation development using parcels
PourPy - A python package to generate potential-pH diagrams
guitarsounds: A Python package to visualize harmonic sounds for musical instrument design
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets
epyc: Computational experiment management in Python
Category Encoders: a scikit-learn-contrib package of transformers for encoding categorical data
cppduals: a nestable vectorized templated dual number library for C++11
Container Tree: Software to Model Container Filesystems, Packages, and Inheritance
Pyripherals: A Python Package for Communicating with Peripheral Electronic Devices
DuoDIC: 3D Digital Image Correlation in MATLAB
MF2: A Collection of Multi-Fidelity Benchmark Functions in Python
EcoAssist: A no-code platform to train and deploy custom YOLOv5 object detection models
taurenmd: A command-line interface for analysis of Molecular Dynamics simulations
AMReX: a framework for block-structured adaptive mesh refinement
jsPsych: Enabling an Open-Source Collaborative Ecosystem of Behavioral Experiments
Pyccel: a Python-to-X transpiler for scientific high-performance computing
SimplyAgree: An R package and jamovi Module for Simplifying Agreement and Reliability Analyses
APECSS: A software library for cavitation bubble dynamics and acoustic emissions
rsimsum: Summarise results from Monte Carlo simulation studies
xpecgen: A program to calculate x-ray spectra generated in tungsten anodes
simulacrumWorkflowR: An R package for Streamlined Access and Analysis of the Simulacrum Cancer Dataset
lifelines: survival analysis in Python
GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size
climpred: Verification of weather and climate forecasts
DistriFS: A Platform and User Agnostic Approach to Dataset Distribution
movement_primitives: Imitation Learning of Cartesian Motion with Movement Primitives
xphyle: Extraordinarily simple file handling
Simple-Web-Server: a fast and flexible HTTP/1.1 C++ client and server library
bmm: Bayesian Map-matching
getTBinR: an R package for accessing and summarising the World Health Organisation Tuberculosis data
SMACT: Semiconducting Materials by Analogy and Chemical Theory
PyBCI: A Python Package for Brain-Computer Interface (BCI) Design
SIHR: a MATLAB/GNU Octave toolbox for single image highlight removal
OpenFEPOPS: A Python implementation of the FEPOPS molecular similarity technique
tidytext: Text Mining and Analysis Using Tidy Data Principles in R
ORION2: A magnetohydrodynamics code for star formation
fibergen: An introductory tool for FFT-based material homogenization
spiketools: a Python package for analyzing single-unit neural activity
TAXPASTA: TAXonomic Profile Aggregation and STAndardisation
SCIMAP: A Python Toolkit for Integrated Spatial Analysis of Multiplexed Imaging Data
Bioassays: a new package in R for analyzing cellular assays
spiro: An R package for analyzing data from cardiopulmonary exercise testing
RxInfer: A Julia package for reactive real-time Bayesian inference
EMD: Empirical Mode Decomposition and Hilbert-Huang Spectral Analyses in Python
iml: An R package for Interpretable Machine Learning