yusuke1997/dblp-id-title huggingface dataset:
fuzzyclara: Efficient Medoid-based Clustering Algorithms for Large and Fuzzy Data
EMBERS: Experimental Measurement of BEam Responses with Satellites
strandCheckR: An R package for quantifying and removing double strand sequences for strand-specific RNA-seq
GeneScape: A Python package for gene ontology visualization
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
nnTensor: An R package for non-negative matrix/tensor decomposition
rdefra: Interact with the UK AIR Pollution Database from DEFRA
DSSE: An environment for simulation of reinforcement learning-empowered drone swarm maritime search and rescue missions
mmh3: A Python extension for MurmurHash3
Salt: Multimodal Multitask Machine Learning for High Energy Physics
BayesFlow: Amortized Bayesian Workflows With Neural Networks
ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets
geostan: An R package for Bayesian spatial analysis
VisualTorch: Streamlining Visualization for PyTorch Neural Network Architectures
uDALES: large-eddy-simulation software for urban flow, dispersion, and microclimate modelling
pyneqsys: Solve symbolically defined systems of non-linear equations numerically
GridFormat: header-only C++-library for grid file I/O
Audiometry: A model-view-viewmodel (MVVM) application framework for hearing impairment diagnosis
VAST: the Void Analysis Software Toolkit
Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs
Rosalution: Supporting data accessibility, integration, curation, interoperability, and reuse for precision animal modeling
dust_extinction: Interstellar Dust Extinction Models
UralicNLP: An NLP Library for Uralic Languages
Pyheartlib: A Python package for processing electrocardiogram signals
CORA and LOGIGRAM: A Duo of Python Packages for Combinational Regularity Analysis (CORA)
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats
q2-sample-classifier: machine-learning tools for microbiome classification and regression
Choco-solver: A Java library for constraint programming
OpenCADD-KLIFS: A Python package to fetch kinase data from the KLIFS database
The sspm R package for spatially-explicit surplus production population models
xclim: xarray-based climate data analytics
Excimontec v1.0: An Open-Source Software Tool for Kinetic Monte Carlo Simulations of Organic Electronic Devices
special: A Python package for the spectral characterization of directly imaged low-mass companions
OfflineMOT: A Python package for multiple objects detection and tracking from bird view stationary drone videos
AI-ANNE: (A) (N)eural (N)et for (E)xploration
G³M-f a global gradient-based groundwater modelling framwork
Badread: simulation of error-prone long reads
visxhclust: An R Shiny package for visual exploration of hierarchical clustering
signnet: An R package for analyzing signed networks
RECOLO: A Python package for the reconstruction of surface pressure loads from kinematic fields using the virtual fields method
PyClustering: Data Mining Library
Sarracen: a Python package for analysis and visualization of smoothed particle hydrodynamics data
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
GBNet: Gradient Boosting packages integrated into PyTorch
BATMAN: Statistical analysis for expensive computer codes made easy
Clustergram: Visualization and diagnostics for cluster analysis
OpenTTDLab: A Python framework for reproducible experiments using OpenTTD
voice: A Comprehensive R Package for Audio Analysis
SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities
lidar: A Python package for delineating nested surface depressions from digital elevation data
Credit Default Swaps with R
Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification
starfish: scalable pipelines for image-based transcriptomics
straditize: Digitizing stratigraphic diagrams
SPyCi-PDB: A modular command-line interface for back-calculating experimental datatypes of protein structures
QuantEcon.py: A community based Python library for quantitative economics
proteoDA: a package for quantitative proteomics
ijtiff: An R package providing TIFF I/O for ImageJ users
CategoricalTimeSeries.jl: A toolbox for categorical time-series analysis
popsynth: A generic astrophysical population synthesis framework
CRNPy: An Open-Source Python Library for Cosmic-Ray Neutron Probe Data Processing
sjmisc: Data and Variable Transformation Functions
Jury: A Comprehensive Evaluation Toolkit
dfitspy: a dfits|fitsort implementation in python
QXTools: A Julia framework for distributed quantum circuit simulation
AnyPyTools: A Python package for reproducible research with the AnyBody Modeling System
PyGModels: A Python package for exploring Probabilistic Graphical Models with Graph Theoretical Structures
FTorch: a library for coupling PyTorch models to Fortran
SkyPy: A package for modelling the Universe
The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq
Pannellum: a lightweight web-based panorama viewer
AncesTrim - a tool for trimming complex pedigrees
OpenMSIStream: A Python package for facilitating integration of streaming data in diverse laboratory environments
Geometric nested sampling: sampling from distributions defined on non-trivial geometries
Acanthophis: a comprehensive plant hologenomics pipeline
The plebeian Graph Library: A WebGL based network visualisation and diagnostics package
clustertools: A Python Package for Analyzing Star Cluster Simulations
Chi: A Python package for treatment response modelling
ExTemp: A computational and image-processing suite for extracting temporal barcodes
PyProximal - scalable convex optimization in Python
Mordecai: Full Text Geoparsing and Event Geocoding
pvlib python: a python package for modeling solar energy systems
pyPLNmodels: A Python package to analyze multivariate high-dimensional count data
PyForestScan: A Python library for calculating forest structural metrics from lidar point cloud data
AutoClassWrapper: a Python wrapper for AutoClass C classification
PyCUTEst: an open source Python package of optimization test problems
OT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezers
PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics
MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks
Syd: A package for making interactive data visualizations in python
CoastalLens: A MATLAB UAV Video Stabilization & Rectification Framework
tacmagic: Positron emission tomography analysis in R
CytobankAPIstats: Computes Signaling and Population Statistics for Cytometry Data on Cytobank using 'CytobankAPI'
Plonk: Smoothed particle hydrodynamics analysis and visualization with Python
pyscreener: A Python Wrapper for Computational Docking Software
DASF: A data analytics software framework for distributed environments
RELSAD: A Python package for reliability assessment of modern distribution systems
Psifr: Analysis and visualization of free recall data
pyscal: A python module for structural analysis of atomic environments
Scripts for Easier Use of Spice (SEUS): A Perl script package for simulating and creating batches of circuit netlists for Monte Carlo simulations when using Ngspice or Ngspice-based simulators
Computer-Aided Generation of N-shift RWS
gLBM: A GPU enabled Lattice Boltzmann Method Library
xml2jupyter: Mapping parameters between XML and Jupyter widgets
TBFMM: A C++ generic and parallel fast multipole method library
LightLogR: Reproducible analysis of personal light exposure data
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
tidyHeatmap: an R package for modular heatmap production based on tidy principles
FAME-Io: Configuration tools for complex agent-based simulations
SetVis: Visualizing Large Numbers of Sets and Intersections
Executorlib - Up-scaling Python workflows for hierarchical heterogenous high-performance computing
svFSI: A Multiphysics Package for Integrated Cardiac Modeling
BluVision Macro - a software for automated powdery mildew and rust disease quantification on detached leaves
Carnival: JVM Property graph data unification toolkit
The Generalized Green's function Cluster Expansion: A Python package for simulating polarons
pyradiosky: A Python package for Radio Sky Models
AuditoryStimuli.jl: A Julia package for generating real-time auditory stimuli
Maelstrom: A Python package for identifying companions to pulsating stars from their light travel time variations
cdcam: Cambridge Digital Communications Assessment Model
SLAM Toolbox: SLAM for the dynamic world
rempsyc: Convenience functions for psychology
lightr: import spectral data and metadata in R
DataRepExp: a R shiny Application that makes Data FAIR for Data Repositories
causal-curve: A Python Causal Inference Package to Estimate Causal Dose-Response Curves
osmapiR: An 'OpenStreetMap API' implementation for R
RTMsim - A Julia module for filling simulations in Resin Transfer Moulding with the Finite Area Method
delfies: a Python package for the detection of DNA breakpoints with neo-telomere addition
mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH
oolong: An R package for validating automated content analysis tools
HSImage: A Python and C++ library to allow interaction with ENVI-BIL hyperspectral images
msmhelper: A Python package for Markov state modeling of protein dynamics
UltraDark.jl: A Julia package for simulation of cosmological scalar fields
Melissa: coordinating large-scale ensemble runs for deep learning and sensitivity analyses
gotranx: General ODE translator
Olaf: a lightweight, portable audio search system
wrenfold: Symbolic code generation for robotics
ndbc-api: Accelerating oceanography and climate science research with Python
MAHOS: Measurement Automation Handling and Orchestration System
ASGarD: Adaptive Sparse Grid Discretization
QUPS: A MATLAB Toolbox for Rapid Prototyping of Ultrasound Beamforming and Imaging Techniques
OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control
Umami: A Python toolkit for jet flavour tagging
NOMAD CAMELS: Configurable Application for Measurements, Experiments and Laboratory Systems
COVID-19 Data Hub
tidyqpcr: Quantitative PCR analysis in the tidyverse
Yellowbrick: Visualizing the Scikit-Learn Model Selection Process
Parent-map: analysis of parental contributions to evolved or engineered protein or DNA sequences
liionpack: A Python package for simulating packs of batteries with PyBaMM
Systems Neuro Browser (SNUB)
Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance
HRV: a Pythonic package for Heart Rate Variability Analysis
HofstadterTools: A Python package for analyzing the Hofstadter model
PANINIpy: Package of Algorithms for Nonparametric Inference with Networks In Python
Tesseract Core: Universal, autodiff-native software components for Simulation Intelligence
Xenomapper: Mapping reads in a mixed species context
LFSpy: A Python Implementation of Local Feature Selection for Data Classification with scikit-learn Compatibility
The Spreadsheet Energy System Model Generator (SESMG): A tool for the optimization of urban energy systems
Scarlet: Scalable Anytime Algorithms for Learning Fragments of Linear Temporal Logic
PyCS3: A Python toolbox for time-delay measurements in lensed quasars
pytreegrav: A fast Python gravity solver
OmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blender
OceanSpy: A Python package to facilitate ocean model data analysis and visualization
MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver
s4rdm3x: A Tool Suite to Explore Code to Architecture Mapping Techniques
RefManageR: Import and Manage BibTeX and BibLaTeX References in R
PYCV: a PLUMED 2 Module Enabling the Rapid Prototyping of Collective Variables in Python
3dfier: automatic reconstruction of 3D city models
GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems
WDPM: the Wetland DEM Ponding Model
subMALDI: an open framework R package for processing irregularly-spaced mass spectrometry data
GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds
imodels: a python package for fitting interpretable models
dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration
Districtgenerator: Generating building-specific load profiles for residential districts
qgs: A flexible Python framework of reduced-order multiscale climate models
hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations
Virtual Bumblebees Artificial Life Simulation
DataInterpolations.jl: Fast Interpolations of 1D data
ABSESpy: An agent-based modeling framework for social-ecological systems
spaghetti: spatial network analysis in PySAL
Combining a Probability and a Non-Probability Sample in a Capture-Recapture Setting
bayestestR: Describing Effects and their Uncertainty, Existence and Significance within the Bayesian Framework
Spectral Connectivity: a python package for computing multitaper spectral estimates and frequency-domain brain connectivity measures on the CPU and GPU
TSrepr R package: Time Series Representations
DREiMac: Dimensionality Reduction with Eilenberg-MacLane Coordinates
Production Function Estimation in R: The prodest Package
c14bazAAR: An R package for downloading and preparing C14 dates from different source databases
Kactus2: A graphical EDA tool built on the IP-XACT standard
pyCSEP: A Python Toolkit For Earthquake Forecast Developers
Variational Solvers for Irreversible Evolutionary Systems
Leafmap: A Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment
Finch: a tool adding dynamic abundance filtering to genomic MinHashing
QUIT: QUantitative Imaging Tools
Nominally: A Name Parser for Record Linkage
OpenCMP: An Open-Source Computational Multiphysics Package
PyMap3D: 3-D coordinate conversions for terrestrial and geospace environments
robustHD: An R package for robust regression with high-dimensional data
pvOps: a Python package for empirical analysis of photovoltaic field data
FrESCO: Framework for Exploring Scalable Computational Oncology
txshift: Efficient estimation of the causal effects of stochastic interventions in R
abspy: A Python package for 3D adaptive binary space partitioning and modeling
NORDic: a Network-Oriented package for the Repurposing of Drugs
ukpopulation: unified national and subnational population estimates and projections, including variants
EDP: a program for projecting electron densities from VASP onto planes
Lerche: Generating data file processors in Julia from EBNF grammars
ParticleScattering: Solving and optimizing multiple-scattering problems in Julia
Zoomerjoin: Superlatively-Fast Fuzzy Joins
svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations
Universal Numbers Library: Multi-format Variable Precision Arithmetic Library
scribl: A system for the semantic capture of relationships in biological literature
pyEQUIB Python Package, an addendum to proEQUIB: IDL Library for Plasma Diagnostics and Abundance Analysis
Solar Data Tools: a Python library for automated analysis of unlabeled PV data
kramersmoyal: Kramers-Moyal coefficients for stochastic processes
spatial-efd: A spatial-aware implementation of elliptical Fourier analysis
Desalination and brine treatment systems integrated modelling framework: simulation and evaluation of water and resource recovery
hotsub: A batch job engine for cloud services with ETL framework
Bam-readcount - rapid generation of basepair-resolution sequence metrics
KraljicMatrix: An R package for implementing the Kraljic Matrix to strategically analyze a firm's purchasing portfolio
Hexatomic: An extensible, OS-independent platform for deep multi-layer linguistic annotation of corpora
X.509-Compliant Hybrid Certificates for the Post-Quantum Transition
MorphoMetriX: a photogrammetric measurement GUI for morphometric analysis of megafauna
Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases
fctSnPM: Factorial ANOVA and post-hoc tests for Statistical nonParametric Mapping in MATLAB
PyAutoLens: Open-Source Strong Gravitational Lensing
COMPAS: A rapid binary population synthesis suite
Effluent: A Python package for modelling effluent discharge
TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization
fuelcell: A Python package and graphical user interface for electrochemical data analysis
bbousuite: A set of R packages to facilitate analysis of boreal caribou survival and recruitment data
NcCut: A NetCDF Viewer and Transecting Tool
Spiral: splitters for identifiers in source code files
SISSO++: A C++ Implementation of the Sure-Independence Screening and Sparsifying Operator Approach
ShOpt.jl: A Julia Package for Empirical Point Spread Function Characterization of JWST NIRCam Data
mosartwmpy: A Python implementation of the MOSART-WM coupled hydrologic routing and water management model
smmR: A Semi-Markov R package
LocalCop: An R package for local likelihood inference for conditional copulas
Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science
CellPyLib: A Python Library for working with Cellular Automata
normflows: A PyTorch Package for Normalizing Flows
MetSim: A Python package for estimation and disaggregation of meteorological data
WorldDynamics.jl: A Julia Package for Developing and Simulating Integrated Assessment Models
PolSAR tools: A QGIS plugin for generating SAR descriptors
Multi-attribute task builder
Exonoodle: Synthetic time-series spectra generator for transiting exoplanets
Tools21cm: A python package to analyse the large-scale 21-cm signal from the Epoch of Reionization and Cosmic Dawn
Manif: A micro Lie theory library for state estimation in robotics applications
ECNet: Large scale machine learning projects for fuel property prediction
EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms
CheckQC: Quick quality control of Illumina sequencing runs
SALib: An open-source Python library for Sensitivity Analysis
quadcleanR: An R Package for the Cleanup and Visualization of Quadrat Data
Annotate-Lab: Simplifying Image Annotation
icepyx: querying, obtaining, analyzing, and manipulating ICESat-2 datasets
Surprise: A Python library for recommender systems
TEfits: Nonlinear regression for time-evolving indices
AutoBZ.jl: Automatic, adaptive Brillouin zone integration using Wannier interpolation
ElectricGrid.jl - A Julia-based modeling and simulation tool for power electronics-driven electric energy grids
MultilayerGraphs.jl: Multilayer Network Science in Julia
daiquiri: Data Quality Reporting for Temporal Datasets
Logodetect: One-shot detection of logos in image and video data
Gauss-Radau Small-body Simulator (GRSS): An Open-Source Library for Planetary Defense
Gyselalib++: A Portable C++ Library for Semi-Lagrangian Kinetic and Gyrokinetic Simulations
JAXbind: Bind any function to JAX
TrixiParticles.jl: Particle-based multiphysics simulation in Julia
Emiproc: A Python package for emission inventory processing
Dnaapler: A tool to reorient circular microbial genomes
Distant Viewing Toolkit: A Python Package for the Analysis of Visual Culture
PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm
modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions
DeepReg: a deep learning toolkit for medical image registration
PyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure & Morphology
anndata: Access and store annotated data matrices
CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds
PySPOD: A Python package for Spectral Proper Orthogonal Decomposition (SPOD)
covidregionaldata: Subnational data for COVID-19 epidemiology
GrIML: A Python package for investigating Greenland's ice-marginal lakes under a changing climate
dml: Distance Metric Learning in R
GrainLearning: A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials
The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries
PypeIt: The Python Spectroscopic Data Reduction Pipeline
qujax: Simulating quantum circuits with JAX
HCP: A Matlab package to create beautiful heatmaps with richly annotated covariates
CBX: Python and Julia Packages for Consensus-Based Interacting Particle Methods
Brainchop: In-browser MRI volumetric segmentation and rendering
PolaronMobility.jl: Implementation of the Feynman variational polaron model
tRIBS v5.2: A multi-resolution, parallel platform for tributary hydrology in forest applications
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees
libfmp: A Python Package for Fundamentals of Music Processing
Fitting a Gamma-Gompertz survival model to capture-recapture data collected on free-ranging animal populations
AxoPy: A Python Library for Implementing Human-Computer Interface Experiments
turtleFSI: A Robust and Monolithic FEniCS-based Fluid-Structure Interaction Solver
edarf: Exploratory Data Analysis using Random Forests
Eclipse Golo
fars_cleaner: A Python package for downloading and pre-processing vehicle fatality data in the US
HomoPy: A Python package for homogenization procedures in fiber reinforced polymers
Atramhasis: An online SKOS vocabulary editor
Tyssue: an epithelium simulation library
GAIM: A C++ library for Genetic Algorithms and Island Models
CosmicProfiles: A Python package for radial profiling of finitely sampled dark matter halos and galaxies
Eyestream: An Open WebSocket-based Middleware for Serializing and Streaming Eye Tracker Event Data from Gazepoint GP3 HD Research Hardware
PsiRESP: calculating RESP charges with Psi4
elmada: Dynamic electricity carbon emission factors and prices for Europe
passt: An R implementation of the Probability Associator Time (PASS-T) model
SpatialGEV: Fast Bayesian inference for spatial extreme value models in R
labjack-controller: Robust and Easy Data Collection with Labjack T-Series DAQs in Python
IGraph/M: graph theory and network analysis for Mathematica
musclesyneRgies: factorization of electromyographic data in R with sensible defaults
AirFogSim: A Python Package for Benchmarking Collaborative Intelligence in Low-Altitude Vehicular Fog Computing
Augmentor: An Image Augmentation Library for Machine Learning
Limarka: making possible Brazilian students writing dissertation and thesis with Markdown
'pygetpapers': a Python library for automated retrieval of scientific literature
iceFEM: A FreeFem package for wave induced ice-shelf vibrations
MARTINI: The Little Match and Replace Tool for Automatic Code Rewriting
PyEI: A Python package for ecological inference
Back to sequences: Find the origin of k-mers
REMORA: Regional Modeling of Oceans Refined Adaptively (built on AMReX)
The hhi Package: Streamlined Calculation and Visualization of Herfindahl-Hirschman Index Scores
psychTestR: An R package for designing and conducting behavioural psychological experiments
arcesetc: ARC Echelle Spectrograph Exposure Time Calculator
pytransform3d: 3D Transformations for Python
sleev: An R Package for Semiparametric Likelihood Estimation with Errors in Variables
ggvoronoi: Voronoi Diagrams and Heatmaps with ggplot2
SESAMI APP: An Accessible Interface for Surface Area Calculation of Materials from Adsorption Isotherms
interflow: A Python package to organize, calculate, and visualize sectoral interdependency flow data
neotoma2: An R package to access data from the Neotoma Paleoecology Database
Spelunker: A quick-look Python pipeline for JWST NIRISS FGS Guide Star Data
SMART: Spatial Modeling Algorithms for Reactions and Transport
htmldate: A Python package to extract publication dates from web pages
FELINE: A Tool to Detect Emission Line Galaxies in 3D Data