yusuke1997/dblp-id-title huggingface dataset:
Managing Reproducible Computational Experiments with Curated Proteins in KINARI-2
On the Realisability of Chemical Pathways
Prediction of Drug Response with a Topology Based Dual-Layer Network Model
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm
Predicting Drug Drug Interactions by Signed Graph Filtering-Based Convolutional Networks
PrSMBooster: Improving the Accuracy of Top-Down Proteoform Characterization Using Deep Learning Rescoring Models
A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression Data
In Silico-Guided Discovery of Potential HIV-1 Entry Inhibitors Mimicking bNAb N6: Virtual Screening, Docking, Molecular Dynamics, and Post-Molecular Modeling Analysis
An Improved Particle Swarm Optimization with Dynamic Scale-Free Network for Detecting Multi-omics Features
Exploration and Visualization Methods for Chromatin Interaction Data
The Identification of Antisense Gene Pairs Through Available Software
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis
A Distance-Based Method for Inferring Phylogenetic Networks in the Presence of Incomplete Lineage Sorting
LGFMDA: miRNA-Disease Association Prediction with Local and Global Feature Representation Learning
schematikon: Detailed Sequence-Structure Relationships from Mining a Non-redundant Protein Structure Database - (Extended Abstract)
Joint Sparse Precision Matrix Estimation for Cancer Diagnosis
Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least Squares
"Master-Slave" Biological Network Alignment
Structure-Based Analysis of Protein Binding Pockets Using Von Neumann Entropy
Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and k-mer Hashing
Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories
MEMDA: A Multi-similarity Integration Pre-completion Algorithm with Error Correction for Predicting Microbe-Drug Associations
MLMVFE: A Machine Learning Approach Based on Muli-view Features Extraction for Drug-Disease Associations Prediction
Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees
Bioinformatics Research and Applications - 11th International Symposium, ISBRA 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings
Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA
On the Comparison of Sets of Alternative Transcripts
StarLace: Nested Visualization of Temporal Brain Connectivity Data
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees
Improving Metagenomic Classification Using Discriminative k-mers from Sequencing Data
Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing
NEMo: An Evolutionary Model with Modularity for PPI Networks
Mean Values of Gene Duplication and Loss Cost Functions
Algorithms for Rapid Error Correction for the Gene Duplication Problem
scCMA: A Contrastive Masked Autoencoder for Single-Cell RNA-Seq Embedding
Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices
Diploid Alignments and Haplotyping
PeakPass: Automating ChIP-Seq Blacklist Creation
Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo
XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting
Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray Experiments
Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients
Learning Structural Genetic Information via Graph Neural Embedding
Protein Structure Prediction and Clustering Using MUFOLD
Learning an Adaptive Self-expressive Fusion Model for Multi-omics Cancer Subtype Prediction
FCMEDriver: Identifying Cancer Driver Gene by Combining Mutual Exclusivity of Embedded Features and Optimized Mutation Frequency Score
A Deep Metric Learning Based Method for Predicting MiRNA-Disease Associations
SUIFS: A Symmetric Uncertainty Based Interactive Feature Selection Method
ECG Arrhythmia Detection Based on Hidden Attention Residual Neural Network
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats
Multiple RNA Interaction with Sub-optimal Solutions
ricME: Long-Read Based Mobile Element Variant Detection Using Sequence Realignment and Identity Calculation
TCSA: A Text-Guided Cross-View Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning
HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data
Deep Learning-Enhanced MHC-II Presentation Prediction and Peptidome Deconvolution
Research on the Prediction Method of Disease Classification Based on Imaging Features
MPFNet: ECG Arrhythmias Classification Based on Multi-perspective Feature Fusion
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs
Effectively Training MRI Reconstruction Network via Sequentially Using Undersampled k-Space Data with Very Low Frequency Gaps
dSpliceType: A Multivariate Model for Detecting Various Types of Differential Splicing Events Using RNA-Seq
A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks
An Efficient Greedy Incremental Sequence Clustering Algorithm
Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling
Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products
Hybrid Attention Knowledge Fusion Network for Automated Medical Code Assignment
Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information
Bidirectional Position-Context Feature Representation for Predicting DNA/RNA Modification Sites
Application of Consensus String Matching in the Diagnosis of Allelic Heterogeneity - (Extended Abstract)
Noninvasive Diagnosis of Cancer Based on the Heterogeneity and Fragmentation Features of Cell-Free Mitochondrial DNA
Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction
Predicting Gene-Disease Associations with Manifold Learning
SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis
A Hierarchical Classification Model for Annotating Antibacterial Biocide and Metal Resistance Genes via Fusing Global and Local Semantics
Pure Parsimony Xor Haplotyping
De novo Prediction of Drug-Target Interaction via Laplacian Regularized Schatten-p Norm Minimization
On Multiple Protein Scaffold Filling
A New Mathematical Model for Inbreeding Depression in Large Populations
DGCL: A Contrastive Learning Method for Predicting Cancer Driver Genes Based on Graph Diffusion
Combining Sequence and Epigenomic Data to Predict Transcription Factor Binding Sites Using Deep Learning
Couplet Supertree Based Species Tree Estimation
Irreplaceable Amino Acids and Reduced Alphabets in Short-Term and Directed Protein Evolution
Motif Construction from High-Throughput SELEX Data
Towards a More Accurate Error Model for BioNano Optical Maps
EpIntMC: Detecting Epistatic Interactions Using Multiple Clusterings
Imputation-Based Local Ancestry Inference in Admixed Populations
Network Analysis of Human Disease Comorbidity Patterns Based on Large-Scale Data Mining
Conformational Transitions and Principal Geodesic Analysis on the Positive Semidefinite Matrix Manifold
Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions - (Invited Keynote Talk)
Differential Privacy Preserving Genomic Data Releasing via Factor Graph
MOGATFF: An Explainable Multi-Omics Prediction Model with Feature Enhancement for Genotype-Phenotype Association Analysis
RFIR: A Lightweight Network for Retinal Fundus Image Restoration
Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography
PhAT-QTL: A Phase-Aware Test for QTL Detection
Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings
Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear LP-Rounding
A Deep Learning Approach Based on Feature Reconstruction and Multi-dimensional Attention Mechanism for Drug-Drug Interaction Prediction
Noise-Based Feature Perturbation as a Selection Method for Microarray Data
Subgraph-Aware Dynamic Attention Network for Drug Repositioning
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution
Efficient Sequence Embedding for SARS-CoV-2 Variants Classification
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods
The Use of a Conformational Alphabet for Fast Alignment of Protein Structures
An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays
An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number
Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level
MMLN: Leveraging Domain Knowledge for Multimodal Diagnosis
GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches
Continuous Identification of Sepsis-Associated Acute Heart Failure Patients: An Integrated LSTM-Based Algorithm
A Pattern Recognition Tool for Medium-Resolution Cryo-EM Density Maps and Low-Resolution Cryo-ET Density Maps
Déjà Vu Switching for Multiplane NoCs
Back Suction: Service Guarantees for Latency-Sensitive On-chip Networks
NOCS 2010, Fourth ACM/IEEE International Symposium on Networks-on-Chip, Grenoble, France, May 3-6, 2010
Hierarchical Network-on-Chip for Embedded Many-Core Architectures
Spidergon STNoC design flow
Approximate nanophotonic interconnects
On the Accuracy of Stochastic Delay Bound for Network on Chip
Configurable emulated shared memory architecture for general purpose MP-SOCs and NOC regions
Lookahead-based adaptive voltage scheme for energy-efficient on-chip interconnect links
Distributed SDN architecture for NoC-based many-core SoCs
Backward probing deadlock detection for networks-on-chip
Safe and dynamic traffic rate control for networks-on-chips
Using benes networks at fault-tolerant and deflection routing based network-on-chips
A Network of Time-Division Multiplexed Wiring for FPGAs
Invited Talk 1- Past, Present, and Future Communicating Processors
Fabrics on Die: Where Function, Debug and Test Meet
A Hybrid Buffer Design with STT-MRAM for On-Chip Interconnects
Physical vs. Virtual Express Topologies with Low-Swing Links for Future Many-Core NoCs
Ruche Networks: Wire-Maximal, No-Fuss NoCs : Special Session Paper
Multi-bit transient fault control for NoC links using 2D fault coding method
Logic-based implementation of fault-tolerant routing in 3D network-on-chips
A 7.5-mW 10-Gb/s 16-QAM wireline transceiver with carrier synchronization and threshold calibration for mobile inter-chip communications in 16-nm FinFET
Link pipelining strategies for an application-specific asynchronous NoC
Increasing NoC power estimation accuracy through a rate-based model
PART: Pinning Avoidance in RDMA Technologies
Ultra Fine-Grained Run-Time Power Gating of On-chip Routers for CMPs
Augmenting manycore programmable accelerators with photonic interconnect technology for the high-end embedded computing domain
A Lightweight Fault-Tolerant Mechanism for Network-on-Chip
An NoC and cache hierarchy substrate to address effective virtualization and fault-tolerance
Powermax: an automated methodology for generating peak-power traffic in networks-on-chip
A Statically Scheduled Time-Division-Multiplexed Network-on-Chip for Real-Time Systems
On-Chip Decentralized Routers with Balanced Pipelines for Avoiding Interconnect Bottleneck
Achieving balanced buffer utilization with a proper co-design of flow control and routing algorithm
In-network Monitoring and Control Policy for DVFS of CMP Networks-on-Chip and Last Level Caches
Abetting Planned Obsolescence by Aging 3D Networks-on-Chip
Packet-level static timing analysis for NoCs
Dynamic traffic distribution among hierarchy levels in hierarchical Networks-on-Chip (NoCs)
Improving Inference Latency and Energy of DNNs through Wireless Enabled Multi-Chip-Module-based Architectures and Model Parameters Compression
Chip-scale si-photonics optical transceiverfor a photonics-electronics convergence system (invited paper)
SecONet: A Security Framework for a Photonic Network-on-Chip
A modular synchronizing FIFO for NoCs
Populating and exploring the design space of wavelength-routed optical network-on-chip topologies by leveraging the add-drop filtering primitive
Fine-Grained Bandwidth Adaptivity in Networks-on-Chip Using Bidirectional Channels
Flow mapping and data distribution on mesh-based deep learning accelerator
Variable-width datapath for on-chip network static power reduction
Design trade-offs in energy efficient NoC architectures
A Low-Overhead, Fully-Distributed, Guaranteed-Delivery Routing Algorithm for Faulty Network-on-Chips
Improving the Reliability and Energy-Efficiency of High-Bandwidth Photonic NoC Architectures with Multilevel Signaling
A heuristic method of generating diameter 3 graphs for order/degree problem (invited paper)
Dynamic Flow Regulation for IP Integration on Network-on-Chip
Enabling Technology for On-Chip Interconnection Networks
PROTEUS: Rule-Based Self-Adaptation in Photonic NoCs for Loss-Aware Co-Management of Laser Power and Performance
Silicon-photonic clos networks for global on-chip communication
Cross clock-domain TDM virtual circuits for networks on chips
Diagnosis of interconnect shorts in mesh NoCs
SECTAR: Secure NoC using Trojan Aware Routing
NOCS '21: International Symposium on Networks-on-Chip, Virtual Event, October 14-15, 2021
Minimally buffered deflection routing with in-order delivery in a torus
Highway in TDM NoCs
Analysis of on-chip communication properties in accelerator architectures for deep neural networks
Approaching Ideal NoC Latency with Pre-Configured Routes
Accelerating atomic operations on GPGPUs
Design of Bandwidth Aware and Congestion Avoiding Efficient Routing Algorithms for Networks-on-Chip Platforms
AxNoC: Low-power Approximate Network-on-Chips using Critical-Path Isolation
Heterogeneous NoC Design for Efficient Broadcast-based Coherence Protocol Support
Automatic verification for deadlock in networks-on-chips with adaptive routing and wormhole switching
Mesh of Tree: Unifying Mesh and MFPGA for Better Device Performances
Exploring concentration and channel slicing in on-chip network router
Keynote Talk: NoCs: A Short History of Success and a Long Future
Towards Energy-Efficient High-Throughput Photonic NoCs for 2.5D Integrated Systems: A Case for AWGRs
Efficient routing implementation in complex systems-on-chip
SMART++: reducing cost and improving efficiency of multi-hop bypass in NoC routers
Curbing energy cravings in networks: A cross-sectional view across the micro-macro boundary
Design of a High-Throughput Distributed Shared-Buffer NoC Router
Performance and power efficient on-chip communication using adaptive virtual point-to-point connections
Sentry-NoC: a statically-scheduled NoC for secure SoCs
Minimal-path fault-tolerant approach using connection-retaining structure in Networks-on-Chip
Deadlock-free fine-grained thread migration
CCNoC: Specializing On-Chip Interconnects for Energy Efficiency in Cache-Coherent Servers
Towards compelling cases for the viability of silicon-nanophotonic technology in future manycore systems
Novel Hybrid Wired-Wireless Network-on-Chip Architectures: Transducer and Communication Fabric Design
APEC: improved acknowledgement prioritization through erasure coding in bufferless NoCs
Improved Utilization of NoC Channel Bandwidth by Switch Replication for Cost-Effective Multi-processor Systems-on-Chip
QuT: A low-power optical Network-on-Chip
Design of high bandwidth photonic NoC architectures using optical multilevel signaling
Fault-Tolerant Flow Control in On-chip Networks
Direct-modulated optical networks for interposer systems
Multi-carrier spread-spectrum transceiver for WiNoC
Securing NoCs Against Timing Attacks with Non-Interference Based Adaptive Routing
Keynote 3 (Banquet Talk) Digital space
Scalable parallel simulation of networks on chip
Reducing network-on-chip energy consumption through spatial locality speculation
Wear-Aware Adaptive Routing for Networks-on-Chips
Exploiting inherent information redundancy to manage transient errors in NoC routing arbitration
Architecting a Secure Wireless Network-on-Chip
Towards stochastic delay bound analysis for Network-on-Chip
Physical planning for the architectural exploration of large-scale chip multiprocessors
Design of High-Radix Clos Network-on-Chip
UBERNoC: unified buffer power-efficient router for network-on-chip
Analysis of worst-case delay bounds for best-effort communication in wormhole networks on chip
A speculative arbiter design to enable high-frequency many-VC router in NoCs
Bufferless NoCs with Scheduled Deflection Routing
Comparison of Deadlock Recovery and Avoidance Mechanisms to Approach Message Dependent Deadlocks in On-chip Networks
Overlaid Mesh Topology Design and Deadlock Free Routing in Wireless Network-on-Chip
Dynamic packet fragmentation for increased virtual channel utilization in on-chip routers
Energy efficient application mapping to NoC processing elements operating at multiple voltage levels
Optimal network architectures for minimizing average distance in k-ary n-dimensional mesh networks
A Low-Latency and Low-Power Hybrid Insertion Methodology for Global Interconnects in VDSM Designs
Achieving Lightweight Multicast in Asynchronous NoCs Using a Continuous-Time Multi-Way Read Buffer
Analyzing networks-on-chip based deep neural networks
NoCs simulation framework for OMNeT++
Transient and Permanent Error Control for High-End Multiprocessor Systems-on-Chip
ARTEMIS: An Aging-Aware Runtime Application Mapping Framework for 3D NoC-based Chip Multiprocessors
Synthesis of predictable global NoC by abutment in synchoros VLSI design
Improving the Performance of GALS-Based NoCs in the Presence of Process Variation
Applying Dataflow Analysis to Dimension Buffers for Guaranteed Performance in Networks on Chip
Addressing Manufacturing Challenges with Cost-Efficient Fault Tolerant Routing
A Modeling and exploration framework for interconnect network design in the nanometer era
An On-Chip and Inter-Chip Communications Network for the SpiNNaker Massively-Parallel Neural Net Simulator
Global and semi-global communication on Si-IF
Tighter time analysis for real-time traffic in on-chip networks with shared priorities
Photonic Chip-Scale Interconnection Networks for Performance-Energy Optimized Computing
2013 Seventh IEEE/ACM International Symposium on Networks-on-Chip (NoCS), Tempe, AZ, USA, April 21-24, 2013
Hardwired Networks on Chip in FPGAs to Unify Functional and Con?guration Interconnects
A Novel Approach to Reduce Packet Latency Increase Caused by Power Gating in Network-on-Chip
Access Regulation to Hot-Modules in Wormhole NoCs
Ghost routers: energy-efficient asymmetric multicore processors with symmetric NoCs
ICARO: Congestion isolation in networks-on-chip
A novel network fabric for efficient spatio-temporal reduction in flexible DNN accelerators
A 128 x 128 x 24Gb/s Crossbar Interconnecting 128 Tiles in a Single Hop and Occupying 6% of Their Area
Per-flow delay bound analysis based on a formalized microarchitectural model
Sharing a global on-chip transmission line medium without centralized scheduling
Generic Monitoring and Management Infrastructure for 3D NoC-Bus Hybrid Architectures
Co-Design and Abstraction of a Network-on-Chip Using Deterministic Network Calculus
A Communication and configuration controller for NoC based reconfigurable data flow architecture
NoC-Based Support of Heterogeneous Cache-Coherence Models for Accelerators
Power-Efficient and High-Performance Multi-level Hybrid Nanophotonic Interconnect for Multicores
Reinforcement learning based interconnection routing for adaptive traffic optimization
System-Level Design of Networks-on-Chip for Heterogeneous Systems-on-Chip
Engineering a Bandwidth-Scalable Optical Layer for a 3D Multi-core Processor with Awareness of Layout Constraints
A Design-for-Test Implementation of an Asynchronous Network-on-Chip Architecture and its Associated Test Pattern Generation and Application
In-Network Memory Access Ordering for Heterogeneous Multicore Systems
Analytical modeling and evaluation of On-Chip Interconnects using Network Calculus
Exploration of Memory and Cluster Modes in Directory-Based Many-Core CMPs
A distributed and topology-agnostic approach for on-line NoC testing
Exploring High-Dimensional Topologies for NoC Design Through an Integrated Analysis and Synthesis Framework
Packet header attack by hardware trojan in NoC based TCMP and its impact analysis
XYZ-Randomization using TSVs for Low-Latency Energy Efficient 3D-NoCs
Inferring packet dependencies to improve trace based simulation of on-chip networks
Network-on-Chip Architectures for Neural Networks
On Runtime Communication- and Thermal-aware Application Mapping in 3D NoC
Physical-Aware Link Allocation and Route Assignment for Chip Multiprocessing
A Hybrid Ring/Mesh Interconnect for Network-on-Chip Using Hierarchical Rings for Global Routing
Run-time laser power management in photonic NoCs with on-chip semiconductor optical amplifiers
On-Chip Wireless Channel Propagation: Impact of Antenna Directionality and Placement on Channel Performance
Best of both worlds: A bus enhanced NoC (BENoC)
Thermal Impacts on NoC Interconnects
HOPE: Hotspot congestion control for Clos network on chip
CTC: An end-to-end flow control protocol for multi-core systems-on-chip
Data Criticality in Network-On-Chip Design
An energy-efficient millimeter-wave wireless NoC with congestion-aware routing and DVFS
A Hybrid Analog-Digital Routing Network for NoC Dynamic Routing
BLOCON: A Bufferless Photonic Clos network-on-chip architecture
Introduction to the special session on "Silicon photonic interconnects: an illusion or a realistic solution?"
Static virtual channel allocation in oblivious routing
QNoC Asynchronous Router with Dynamic Virtual Channel Allocation
A loosely synchronizing asynchronous router for TDM-scheduled NOCs
NoC Architectures as Enablers of Biological Discovery for Personalized and Precision Medicine
Accurate Congestion Control for RDMA Transfers
TooT: an efficient and scalable power-gating method for NoC routers
SNet, a flexible, scalable network paradigm for manycore architectures
Transaction-Based Communication-Centric Debug
CLAP: a crosstalk and loss analysis platform for optical interconnects
GCA: Global congestion awareness for load balance in Networks-on-Chip
Real-Time Communication Analysis for On-Chip Networks with Wormhole Switching
Centralized buffer router: A low latency, low power router for high radix NOCs
Temperature-Aware Delay Borrowing for Energy-Efficient Low-Voltage Link Design
Physical Implementation of the DSPIN Network-on-Chip in the FAUST Architecture
A Low-Overhead Multicast Bufferless Router with Reconfigurable Banyan Network
ReNoC: A Network-on-Chip Architecture with Reconfigurable Topology
Estimating reliability and throughput of source-synchronous wave-pipelined interconnect
Analytical Performance Modeling of Hierarchical Interconnect Fabrics
Fault-tolerant Network-on-Chip based on Fault-aware Flits and Deflection Routing
Asymmetric NoC Architectures for GPU Systems
A Low-Latency and Memory-Efficient On-chip Network
NoC-Based FPGA: Architecture and Routing
Improving NoC performance under spatio-temporal variability by runtime reconfiguration: a general mathematical framework
Reconfigurable Wireless Network-on-Chip with a Dynamic Medium Access Mechanism
A GALS many-core heterogeneous DSP platform with source-synchronous on-chip interconnection network
Testing WiNoC-Enabled Multicore Chips with BIST for Wireless Interconnects
Statistical Approach to NoC Design
Architecture of the Scalable Communications Core
Traffic- and Thermal-Aware Run-Time Thermal Management Scheme for 3D NoC Systems
Adaptive Manycore Architectures for Big Data Computing