yusuke1997/dblp-id-title huggingface dataset:
An Automated Combination of Kernels for Predicting Protein Subcellular Localization
Extending the Reach of Phylogenetic Inference
Efficient Local Alignment Discovery amongst Noisy Long Reads
Discovery of Protein Substructures in EM Maps
Separating Metagenomic Short Reads into Genomes via Clustering - (Extended Abstract)
Detecting Locus Acquisition Events in Gene Trees
Reconciling Multiple Genes Trees via Segmental Duplications and Losses
Shotgun Protein Sequencing
Annotating Fragmentation Patterns
Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation
Parsimonious Reconstruction of Network Evolution
Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning
Context-Aware Seeds for Read Mapping
BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules
The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics
Sparse Estimation for Structural Variability
An Average-Case Sublinear Exact Li and Stephens Forward Algorithm
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties
Algorithms in Bioinformatics, 6th International Workshop, WABI 2006, Zurich, Switzerland, September 11-13, 2006, Proceedings
Spark: Sparsified Hierarchical Energy Minimization of RNA Pseudoknots
New Algorithms for Structure Informed Genome Rearrangement
Homology Search with Fragmented Nucleic Acid Sequence Patterns
Orthology Relation and Gene Tree Correction: Complexity Results
Further Improvement in Approximating the Maximum Duo-Preservation String Mapping Problem
The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity
Navigating in a Sea of Repeats in RNA-seq without Drowning
Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems
Flux-Based vs. Topology-Based Similarity of Metabolic Genes
Algorithm for Identification of Piecewise Smooth Hybrid Systems: Application to Eukaryotic Cell Cycle Regulation
MADMX: A Novel Strategy for Maximal Dense Motif Extraction
RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions
Sign Assignment Problems on Protein Networks
Fast Lightweight Accurate Xenograft Sorting
Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads
Gene Tree Parsimony for Incomplete Gene Trees
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models
Space-Efficient Representation of Genomic k-Mer Count Tables
Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem
Adding Hidden Nodes to Gene Networks (Extended Abstract)
Identifying Blocks and Sub-populations in Noisy SNP Data
Optimal Computation of Avoided Words
Dynamic Programming Algorithms for Efficiently Computing Cosegmentations between Biological Images
Algorithms in Bioinformatics, 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings
Compressing and Indexing Aligned Readsets
Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC
A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals
On the Complexity of Several Haplotyping Problems
Sparse Learning Based Linear Coherent Bi-clustering
A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number
An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar
Extracting Conflict-Free Information from Multi-labeled Trees
17th International Workshop on Algorithms in Bioinformatics, WABI 2017, Boston, MA, USA, August 21-23, 2017
Heuristic Algorithms for the Maximum Colorful Subtree Problem
Using Dominances for Solving the Protein Family Identification Problem
Sibelia: A Scalable and Comprehensive Synteny Block Generation Tool for Closely Related Microbial Genomes
Making a Network Orchard by Adding Leaves
Haplotypes versus Genotypes on Pedigrees
On the Matrix Median Problem
Preserving Inversion Phylogeny Reconstruction
Recursive Parsing and Grammar Compression in the Era of Pangenomics (Invited Talk)
Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks
Lightweight LCP Construction for Next-Generation Sequencing Datasets
How Many Transcripts Does It Take to Reconstruct the Splice Graph?
A Dynamic Algorithm for Network Propagation
Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation
A Simplified View of DCJ-Indel Distance
Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs
A Tree Based Method for the Rapid Screening of Chemical Fingerprints
Locality-Sensitive Bucketing Functions for the Edit Distance
A Local Chaining Algorithm and Its Applications in Comparative Genomics
MEM-Based Pangenome Indexing for k-mer Queries
Efficient Subgraph Frequency Estimation with G-Tries
A Graph Clustering Approach to Weak Motif Recognition
Summarizing Multiple Gene Trees Using Cluster Networks
Algorithms for the Extraction of Synteny Blocks from Comparative Maps
McDag: Indexing Maximal Common Subsequences in Practice
Sequence Similarity Estimation by Random Subsequence Sketching
Modified Mincut Supertrees
Multichromosomal Genome Median and Halving Problems
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates
Match Chaining Algorithms for cDNA Mapping
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model
Integer Linear Programs for Discovering Approximate Gene Clusters
Protein Classification with Improved Topological Data Analysis
Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping
On a Conjecture about Compatibility of Multi-states Characters
Hardness and Approximability of the Inverse Scope Problem
Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition
Copy-Number Evolution Problems: Complexity and Algorithms
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks
New Absolute Fast Converging Phylogeny Estimation Methods with Improved Scalability and Accuracy
Finding All Maximal Perfect Haplotype Blocks in Linear Time
Consensus Clusters in Robinson-Foulds Reticulation Networks
A Fixed-Parameter Algorithm for Minimum Common String Partition with Few Duplications
Using Semi-definite Programming to Enhance Supertree Resolvability
Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction
Identifying Rare Cell Populations in Comparative Flow Cytometry
CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population
Chaining Algorithms for Alignment of Draft Sequence
Computing Refined Buneman Trees in Cubic Time
Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees
Computing the Skewness of the Phylogenetic Mean Pairwise Distance in Linear Time
OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations
The Generalized Robinson-Foulds Metric
biRNA: Fast RNA-RNA Binding Sites Prediction
SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy
Efficient Indexed Alignment of Contigs to Optical Maps
Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches
Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley's K-Function or Runs of Homozygosity?
Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings
Detecting Mutations by eBWT
From de Bruijn Graphs to Rectangle Graphs for Genome Assembly
Ortholog Clustering on a Multipartite Graph
Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms
Informative Motifs in Protein Family Alignments
Haplotype-Aware Long-Read Error Correction
Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data
Accelerating the Computation of Elementary Modes Using Pattern Trees
Algorithms in Bioinformatics, Third International Workshop, WABI 2003, Budapest, Hungary, September 15-20, 2003, Proceedings
FinIS: Improved in silico Finishing Using an Exact Quadratic Programming Formulation
NAPX: A Polynomial Time Approximation Scheme for the Noah's Ark Problem
K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data
MultiProt - A Multiple Protein Structural Alignment Algorithm
Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures
Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular Systems
Genome Identification and Classification by Short Oligo Arrays
A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures
Reducing Distortion in Phylogenetic Networks
Phylogenetic Network Inferences Through Efficient Haplotyping
The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees
Genomic Distance with DCJ and Indels
Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification
New Efficient Algorithm for Detection of Horizontal Gene Transfer Events
Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search
Compression Algorithm for Colored de Bruijn Graphs
A Combinatorial Approach to Automatic Discovery of Cluster-Patterns
An Optimal Reconciliation Algorithm for Gene Trees with Polytomies
An Improved Model for Statistical Alignment
Exact Transcript Quantification Over Splice Graphs
Sequence-Length Requirements for Phylogenetic Methods
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms
Fast and Accurate Species Trees from Weighted Internode Distances
Linearization of Median Genomes under DCJ
Pangenomic Genotyping with the Marker Array
Determination of Binding Amino Acids Based on Random Peptide Array Screening Data
SibJoin: A Fast Heuristic for Half-Sibling Reconstruction
New Algorithm for the Simplified Partial Digest Problem
A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment
Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data
Minimum Factorization Agreement of Spliced ESTs
Designing Optimally Multiplexed SNP Genotyping Assays
Listing All Sorting Reversals in Quadratic Time
Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique
Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms
Genome Rearrangement Phylogeny Using Weighbor
Fast Prediction of RNA-RNA Interaction
Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation
MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing
Comparative Methods for Gene Structure Prediction in Homologous Sequences
A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem
Constructing Majority-Rule Supertrees
StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs
Algorithms in Bioinformatics - 12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings
Approximation Algorithms for Bi-clustering Problems
A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks
Bloom Filter Trie - A Data Structure for Pan-Genome Storage
A Faster Algorithm for Detecting Network Motifs
A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis
Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches
Flow Decomposition with Subpath Constraints
Reconstructing the Evolution of Molecular Interaction Networks under the DMC and Link Dynamics Models
Rapidly Computing the Phylogenetic Transfer Index
WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data
Parsing Screenplays for Extracting Social Networks from Movies
From high heels to weed attics: a syntactic investigation of chick lit and literature
Linguistic Resources and Topic Models for the Analysis of Persian Poems
A computational linguistic approach to Spanish Golden Age Sonnets: metrical and semantic aspects
GutenTag: an NLP-driven Tool for Digital Humanities Research in the Project Gutenberg Corpus
Structure-based Clustering of Novels
A Dictionary of Wisdom and Wit: Learning to Extract Quotable Phrases
Trend Analysis in Harper's Bazaar
Computational Analysis of Referring Expressions in Narratives of Picture Books
Computational analysis to explore authors' depiction of characters
Social Network Analysis of Alice in Wonderland
Proceedings of the Workshop on Computational Linguistics for Literature, CLfL@NAACL-HLT 2013, June 14, 2013, Atlanta, GA, USA
Tradition and Modernity in 20th Century Chinese Poetry
Function Words for Chinese Authorship Attribution
Bilingual Chronological Classification of Hafez's Poems
A Pilot PropBank Annotation for Quranic Arabic
Automatic Text Generation by Learning from Literary Structures
Validating Literary Theories Using Automatic Social Network Extraction
Quotations, Relevance and Time Depth: Medieval Arabic Literature in Grids and Networks
Tools for Digital Humanities: Enabling Access to the Old Occitan Romance of Flamenca
Towards a Literary Machine Translation: The Role of Referential Cohesion
Aligning Bilingual Literary Works: a Pilot Study
Recognition of Classical Arabic Poems
Reconstructing Ancient Literary Texts from Noisy Manuscripts
From Speaker Identification to Affective Analysis: A Multi-Step System for Analyzing Children's Stories
A Pilot Experiment on Exploiting Translations for Literary Studies on Kafka's "Verwandlung"
Unsupervised Stylistic Segmentation of Poetry with Change Curves and Extrinsic Features
Mining wisdom
Time after Time: Representing Time in Literary Texts
Digitizing 18th-Century French Literature: Comparing transcription methods for a critical edition text
Visualizing Poetry with SPARSAR - Visual Maps from Poetic Content
A Computational Analysis of Style, Affect, and Imagery in Contemporary Poetry
Clustering Voices in The Waste Land
Towards a better understanding of Burrows's Delta in literary authorship attribution
Identifying Literary Texts with Bigrams
Proceedings of the Fifth Workshop on Computational Linguistics for Literature, CLfL@NAACL-HLT 2016, June 16, 2016, San Diego, California, USA
The desirability of a corpus of online book responses
Gender-Based Vocation Identification in Swedish 19th Century Prose Fiction using Linguistic Patterns, NER and CRF Learning
Exploring Cities in Crime: Significant Concordance and Co-occurrence in Quantitative Literary Analysis
Proceedings of the 3rd Workshop on Computational Linguistics for Literature, CLfL@EACL 2014, April 27, 2014, Gothenburg, Sweden
Rhetorical Figure Detection: the Case of Chiasmus
Groundhog DAG: Representing Semantic Repetition in Literary Narratives
Supervised Machine Learning for Hybrid Meter
Gender-Distinguishing Features in Film Dialogue
RhymeDesign: A Tool for Analyzing Sonic Devices in Poetry
Literary authorship attribution with phrase-structure fragments
Automated Translation of a Literary Work: a Pilot Study
Rule-based Coreference Resolution in German Historic Novels
Syntax Matters for Rhetorical Structure: The Case of Chiasmus
Proceedings of the Fourth Workshop on Computational Linguistics for Literature, CLfL@NAACL-HLT 2015, June 4, 2015, Denver, Colorado, USA
Translating Literary Text between Related Languages using SMT
Function Words in Authorship Attribution. From Black Magic to Theory?
Intersecting Word Vectors to Take Figurative Language to New Heights
A Tale of Two Cultures: Bringing Literary Analysis and Computational Linguistics Together
Towards a computational approach to literary text analysis
Proceedings of the Workshop on Computational Linguistics for Literature, CLfL@NAACL-HLT 2012, June 8, 2012, Montréal, Canada
An initial study of topical poetry segmentation
Digital Publishing for Conference Proceedings on CD-ROM
Grey Literature and Multiple Collections in NCSTRL
Digital Books in MeDoc - A First Analysis of Usage Patterns
Experiences in Document Conversions During the MeDoc Project
Cost Models and Accounting in MeDoc
Query Transformation for Heterogeneous Provider Systems in Medoc
The MeDoc Digital Library Project: Its Goals and Major Achievements
The Stanford InfoBus and Its Service Layers: Augmenting the Internet with High-Level Information Management Protocols
Objectives, Results and Conclusions of the European DECOMATE Project: Delivery of Copyright Material to End Users
Ariadne, an Interactive Navigation and Search System for Computer Science Information on the World-Wide Web
Use of MeDoc Offerings in Technical Education
The MeDoc System - A Digital Publication and Reference Service for Computer Science
Digital Libraries in Computer Science: The MeDoc Approach
Books and Journals in MeDoc - Experiences on Bringing Publications Online
The MeDoc Communication Protocol
Design and Implementation of the MeDoc Fulltext System
The MeDoc Library: Security Aspects
Conception of the User Agent - The User Interface of the MeDoc-System
Provider Selection - Design and Implementation of the Medoc Broker
Access to Bibliographic Data Bases - The Provider Agents in MeDoc
Keeping Up with Friends' Updates on Facebook
Relating Interactions to Artifacts Through Content Analysis: A Practical Investigation
First CYTED-RITOS International Workshop on Groupware, CRIWG '95, Lisbon, Portugal, September 18-20, 1995, Proceedings
Generating User Stories in Groups
An Infrastructure to Support the Development of Collaborative Project-Based Learning Environments
Collaboration and Technology - 16th International Conference, CRIWG 2010, Maastricht, The Netherlands, September 20-23, 2010. Proceedings
Trusty: A Tool to Improve Communication and Collaboration in DSD
Engineering Web Applications Using Real-Time Collaborative Modeling
Collaborative Authoring, Use, and Reuse of Learning Material in a Computer-Integrated Classroom
A Model Based Approach for GUI Development in Groupware Systems
A Visual Interface for Versionable Objects in a Cooperative Environment
SISCO: A tool to improve Meeting Productivity
Ontology-Based Resource Discovery in Pervasive Collaborative Environments
Groupware: Design, Implementation and Use: 10th International Workshop, CRIWG 2004, San Carlos, Costa Rica, September 5-9, 2004. Proceedings
Two-Level Tailoring Support for CSCL
Case Studies of Industry-Academia Research Collaborations for Software Development with Agile
Supporting the Social Practices of Distributed Pair Programming
Bridging the Gap Between Decisions and Their Implementations
Vision-Based Indoor Positioning (VBIP) - An Indoor AR Navigation System with a Virtual Tour Guide
Using Email-Based Network Analysis to Determine Awareness Foci
Improving the Use of Strategies in Computer-Supported Collaborative Processes
Contrasting People's Attitudes Towards Self-disclosure in Online Social Networks and Face-to-Face Settings
Group Matching for Peer Mentorship in Small Groups
Impact Evaluation of Organisational Changes Enabled by Workflow Systems
A Proposal of Integration of the GUI Development of Groupware Applications into the Software Development Process
Context Awareness and Uncertainty in Collocated Collaborative Systems
The Semantic Architecture Tool (SemAT) for Collaborative Enterprise Architecture Development
Boosting Participation in Virtual Communities
Automated Support for Software Process Reuse: Requirements and Early Experiences with the APSEE Model
A Tailorable Collaborative Learning System That Combines OGSA Grid Services and IMS-LD Scripting
On the Convergence of Knowledge Management and Groupware
Social Theatres: A Web-Based Regulated Social Interaction Environment
CooMan - a Global Collaborative Project Management System
An Effort of Communication Measure for Synchronous Collaborative Search Systems
Technical and Environmental Challenges of Collaboration Engineering in Distributed Environments
Designing the Software Support for Partially Virtual Communities
Issues in the Design of Large-scale Shared Networked Worlds
Comparing Usage Performance on Mobile Applications
Enabling the Collaborative Construction and Reuse of Knowledge through a Virtual Reference Environment
SoCCR - Optimistic Concurrency Control for the Web-Based Collaborative Framework Metafora
Awareness Checklist: Reviewing the Quality of Awareness Support in Collaborative Applications
ABACO - A Framework for Artifact-Based Collaboration
Integrating Synchronous and Asynchronous Interactions in Groupware Applications
A Framework for the Classification of Computer Supported Collaborative Design Approaches
Tailoring Collaboration According Privacy Needs in Real-Identity Collaborative Systems
Attention-Based Management of Information Flows in Synchronous Electronic Brainstorming
Building Real-World Ad-Hoc Networks to Support Mobile Collaborative Applications: Lessons Learned
Adapting SACE-CSCW for Concurrent Engineering in the Internet
Characterization of Public Opinion on Political Events in Brazil Based on Twitter Data
Extending the Dependency Taxonomy of Agile Software Development
PaperFlow: A Platform for Cooperative Editing of Scientific Publications
An Analysis of Sign Language Group Communication and Support of Such Communication by Projecting the Upper Body of the Signer
Evaluating Anchored Discussion to Foster Creativity in Online Collaboration
Understanding and Supporting Knowledge Flows in a Community of Software Developers
A Method for Automated Detection of Cultural Difference Based on Image Similarity
Sketchpad: A Learning Tool Supporting Creativity in Collaborative Learning Activities
Transforming Formal and Informal Work Processes
Designing Mobile Shared Workspaces for Loosely Coupled Workgroups
InClass-RTD: Providing Support for Real-Time Threaded Discussions in the Classroom
A Cooperative Visual Hypermedia Approach to Planning and Conducting Virtual Meetings
Sharing Information Resources in Mobile Ad-hoc Networks
An Ontology Engineering Approach to Gamify Collaborative Learning Scenarios
Supporting the Decision Implementation Process
Computer Aided Pattern-Based Collaboration Process Design: A Computer Aided Collaboration Engineering Tool
An Approach for Developing Groupware Product Lines Based on the 3C Collaboration Model
A Comic-Style Chat System with Japanese Expression Techniques for More Expressive Communication
Factors Influencing the Decision to Crowdsource
How to Choose Groupware Tools Considering Stakeholders' Preferences During Requirements Elicitation?
A Decentralized and Flexible Tool Supporting Extreme Programming Software Development
A Framework Designed for Synchronous Groupware Applications in Heterogeneous Environments
Coordination Patterns to Support Mobile Collaboration
A New Platform for Question-Based Sharing of Supervision Competencies in Problem-Based Learning
An Evolutionary Platform for the Collaborative Contextual Composition of Services
Workflow Recovery Framework for Exception Handling: Involving the User
Toward a Taxonomy of Groupware Technologies
Choosing an Appropriate Task to Start with in Open Source Software Communities: A Hard Task
Remote Video Figure Achieves Smooth Cooperative Movement in a Bidirectional Telepresence Robot Environment
N-Sisco: A Notes implementation of SISCO
FootstepsMixer: A Tool to Express Multiple People's Footsteps in a Footstep Transmission System for Awareness Support
A Model for a Collaborative Recommender System for Multimedia Learning Material
Unraveling Challenges in Collaborative Design: A Literature Study
Addressing Co-text Loss with Multiple Visualizations for Chat Messages