yusuke1997/dblp-id-title huggingface dataset:
Biospider: A Web Server for Automating Metabolome Annotations
Algorithms for Multiple Genome Rearrangement by Signed Reversals
Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study
PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics
Development of a System for the Inference of Large Scale Genetic Networks
Threshold Gradient Descent Method for Censored Data Regression with Applications in Pharmacogenomics
Discovering Sequence-Structure Motifs from Protein Segments and Two Applications
AI for infectious disease modelling and therapeutics
Genetic Network Analysis in Light of Massively Parallel Biological Data Acquisition
Selection of Minimum Subsets of Single Nucleotide Polymorphisms to Capture Haplotype Block Diversity
Innovative methodological approaches for data integration to derive patterns across diverse, large-scale biomedical datasets
PhySigs: Phylogenetic Inference of Mutational Signature Dynamics
EpiLoc: A (Working) Text-Based System for Predicting Protein Subcellular Location
Characterisation of Side-Chain Conformational Preferences in a Biologically Active But Unfolded Protein
Session introduction
Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data
Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources
RNA Structural Segmentation
Computational Generation inhibitor-Bound Conformers of P38 Map Kinase and Comparison with Experiments
Annotating Pathways of Interaction Networks
Open Data for Discovery Science
Predicting Gene Functions from Text Using a Cross-Species Approach
Session Introduction: Computational Approaches for Pharmacogenomics
Foundations of a Query and Simulation System for the Modeling of Biochemical and Biological Processes
Human Genome Variation: Linking Genotypes to Clinical Phenotypes - Session Introduction
Shallow Sparsely-Connected Autoencoders for Gene Set Projection
Methods for Clustering Time Series Data Acquired from Mobile Health Apps
Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers
Advanced Methods for Big Data Analytics in Women's Health
Proteinmorphosis: A Mechanical Model for Protein Conformational Changes
Geometric Evolutionary Dynamics of Protein Interaction Networks
Functional Discrimination of Gene Expression Patterns in Terms of the Gene Ontology
Evaluation of Analytical Methods for Connectivity Map Data
Gene Verification and Discovery by Walking Tree Method
Finding Diagnostic Biomarkers in Proteomic Spectra
Development of Exposome Correlations Globes to Map Out Environment-Wide Associations
A Multithreaded Parallel Implementation of a Dynamic Programming Algorithm for Sequence Comparison
Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning
AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets
Large-scale integration of heterogeneous pharmacogenomic data for identifying drug mechanism of action
Detecting Statistical Interaction Between Somatic Mutational Events and Germline Variation from Next-Generation Sequence Data
Towards Early Discovery of Salient Health Threats: A Social Media Emotion Classification Technique
AnomiGAN: Generative Adversarial Networks for Anonymizing Private Medical Data
Enhancing Model Interpretability and Accuracy for Disease Progression Prediction via Phenotype-BasedPatient Similarity Learning
Personalized Hypothesis Tests for Detecting Medication Response in Parkinson Disease Patients Using iPhone Sensor Data
Recommending Pathway Genes Using a Compendium of Clustering Solutions
What about the environment? Leveraging multi-omic datasets to characterize the environment's role in human health
On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping
Metabolic Flux Profiling of Reaction Modules in Liver Drug Transformation
Differential Pathway Dependency Discovery Associated with Drug Response across Cancer Cell Lines
Progress in Predicting Protein Function from Structure: Unique Features of O-Glycosidases
A Methylation-to-Expression Feature Model for Generating Accurate Prognostic Risk Scores and Identifying Disease Targets in Clear Cell Kidney Cancer
Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology
Disorder in Protein Structure and Function - Session Introduction
Detecting Gene Relations from MEDLINE Abstracts
Relaxing Haplotype Block Models for Association Testing
EULER-PCR: Finishing Experiments for Repeat Resolution
Classification of Non-Coding RNA Using Graph Representations of Secondary Structure
Using simulation and optimization approach to improve outcome through warfarin precision treatment
Coverage Profile Correction of Shallow-Depth Circulating Cell-Free DNA Sequencing via Multi-Distance Learning
Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications
Advances in Semantic Representation for Multiscale Biosimulation: A Case Study in Merging Models
Effect of the Peroxisome Proliferators-Activated Receptor (PPAR) Gamma 3 Gene on BMI in 1, 210 School Students from Morelos, Mexico
Assessing and Combining Reliability of Protein Interaction Sources
Rabix: An Open-Source Workflow Executor Supporting Recomputability and Interoperability of Workflow Descriptions
Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS
PVC Detection Using a Convolutional Autoencoder and Random Forest Classifier
SSLPred : Predicting Synthetic Sickness Lethality
Using Graphical Models and Genomic Expression Data to Statistically Validate Models of Genetic Regulatory Networks
Development of a Data-Mining Algorithm to Identify Ages at Reproductive Milestones in Electronic Medical Records
A Parametric Joint Model of DNA-Protein Binding, Gene Expression and DNA Sequence Data to Detect Target Genes of a Transcription Factor
Co-occurrence Patterns of Intimate Partner Violence
Untangling the Effects of Codon Mutation and Amino Acid Exchangeability
Mining MEDLINE: Abstracts, Sentences, or Phrases?
Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls
Towards Identifying Drug Side Effects from Social Media Using Active Learning andCrowd Sourcing
Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication
Protein-chemical Interaction Prediction via Kernelized Sparse Learning SVM
Glycosylation of Proteins: A Computer Based Method for the Rapid Exploration of Comformational Space of N-Glycans
Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses
Significantly Improved Prediction of Subcellular Localization by Integrating Text and Protein Sequence Data
Learning Cyclic Signaling Pathway Structures While Minimizing Data Requirements
One Sequence, Four Folds: Transitions Between an Ensemble of Metastable Folds for the N-Terminal Domain of CD2
Genome-Wide Interaction with Selected Type 2 Diabetes Loci Reveals Novel Loci for Type 2 Diabetes in African Americans
Building the Next Generation of Quantitative Biologists
An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry
Scaling Structural Learning with NO-BEARS to Infer Causal Transcriptome Networks
Extracting Semantic Predications from Medline Citations for Pharmacogenomics
Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment
Special Paper - Introduction
Packaging Biocomputing Software to Maximize Distribution and Reuse
ClinGen Cancer Somatic Working Group - Standardizing and democratizing access to cancer molecular diagnostic data to drive translational research
The Effects of Ordered-Series-of-Motifs Anchoring and Sub-Class Modeling on the Generation of HMMs Representing Highly Divergent Protein Sequences
Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks
Identifying Dynamic Network Modules with Temporal and Spatial Constraints
Exploring Protein Folding Trajectories Using Geometric Spanners
CheXclusion: Fairness gaps in deep chest X-ray classifiers
Genotype-Phenotype association study via new multi-task learning model
Separating the Causes and Consequences in Disease Transcriptome
Discovering Patient Phenotypes Using Generalized Low Rank Models
Genome-Wide Genetic Interaction Analysis of Glaucoma Using Expert Knowledge Derived from Human Phenotype Networks
Sharing Information to Reconstruct Patient-Specific Pathways in Heterogeneous Diseases
Learning the Structure of Protein-Protein Interaction Networks
Increasing Clinical Trial Accrual via Automated Matching of Biomarker Criteria
Deep Motif Dashboard: Visualizing and Understanding Genomic Sequences Using Deep Neural Networks
Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice
AMP: Assembly Matching Pursuit
Multi-Aspect Gene Relation Analysis
Integration of Microarray and Textual Data Improves the Prognosis Prediction of Breast, Lung, and Ovarian Cancer Patients
ceRNA Search Method Identified a MET-activated Subgroup Among EGFR DNA Amplified Lung Adenocarcinoma Patients
The Effectiveness of Multitask Learning for Phenotyping with Electronic Health Records Data
SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project
A Cognitive Evaluation of Four Online Search Engines for Answering Definitional Questions Posed by Physicians
A Simple Algorithm for Identifying Abbreviation Definitions in Biomedical Text
From ODES to Language-Based, Executable Models of Biological Systems
Protecting Genomic Data Privacy with Probabilistic Modeling
A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing
Addressing the Credit Assignment Problem in Treatment Outcome Prediction Using Temporal DifferenceLearning
Inferring Genome-Wide Mosaic Structure
Multiple Genome Rearrangement by Reversals
Improving the Efficiency of a User-Driven Learning System with Reconfigurable Hardware. Application to DNA Splicing
Reproducible Research Workflow in R for the Analysis of Personalized Human Microbiome Data
A Tool for Selecting SNPs for Association Studies Based on Observed Linkage Disequilibrium Patterns
Systems Pharmacogenomics-Bridging the Gap
Linear Modeling of mRNA Expression Levels During CNS Development and Injury
Machine learning and deep analytics for biocomputing: Call for better explainability
Integrative Analysis for Lung Adenocarcinoma Predicts Morphological Features Associated with Genetic Variations
Linking Molecular Imaging Terminology to the Gene Ontology (GO)
Detection of Protein Catalytic Sites in the Biomedical Literature
Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach
Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information
A Machine Learning Approach to Predicting Peptide Fragmentation Spectra
Exploring microRNA Regulation of Cancer with Context-Aware Deep Cancer Classifier
Disordered Function Conjunction: On the In-Silico Function Annotation of Intrinsically DisorderedRegions
Phylogenetics in the Post-Genomic Era - Session Introduction
Penalized Regression for Genome-Wide Association Screening of Sequence Data
Informative Structure Priors: Joint Learning of Dynamic Regulatory Networks from Multiple Types of Data
Pedigree Generation for Analysis of Genetic Linkage and Association
Uncovering the Etiology of Autism Spectrum Disorders: Genomics, Bioinformatics, Environment, Data Collection and Exploration, and Future Possibilities
Robust-ODAL: Learning from Heterogeneous Health Systems Without Sharing Patient-LevelData
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013
Considerations for automated machine learning in clinical metabolic profiling: Altered homocysteine plasma concentration associated with metformin exposure
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature
Res2s2aM: Deep residual network-based model for identifying functional noncoding SNPs in trait-associated regions
Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases
Integrating Genomic Knowledge Sources Through an Anatomy Ontology
Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions
Geometric Analysis of Cross-Linkability for Protein Fold Discrimination
Ontology Development for a Pharmacogenetics Knowledge Base
Tree-Weighting for Multi-Study Ensemble Learners
CERENKOV3: Clustering and Molecular Network-Derived Features Improve Computational Predictionof Functional Noncoding SNPs
MUSE: A Multi-locus Sampling-based Epistasis Algorithm for Quantitative Genetic Trait Prediction
Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records
Prospective Exploration of Biochemical Tissue Composition via Imaging Mass Spectrometry Guided by Principal Component Analysis
3D-Blast: 3D Protein Structure Alignment, Comparison, and Classification Using Spherical Polar Fourier Correlations
Event Ontology: A Pathway-Centric Ontology for Biological Processes
Graph Kernels For Disease Outcome Prediction From Protein-Protein Interaction Networks
Discovering Implicit Associations Between Genes and Hereditary Diseases
Discovery of Causal Relationships in a Gene-Regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data
Anti-Infectious Drug Repurposing Using an Integrated Chemical Genomics and Structural Systems Biology Approach
Microvascular Dynamics from 4D Microscopy Using Temporal Segmentation
PLATYPUS: A Multiple-View Learning Predictive Framework for Cancer Drug Sensitivity Prediction
Reproducible Drug Repurposing: When Similarity Does Not Suffice
An Integrated Network Approach to Identifying Biological Pathways and Environmental Exposure Interactions in Complex Diseases
BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity
Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading
Combining Text Mining and Sequence Analysis to Discover Protein Functional Regions
Co-Design in Synthetic Biology: A System-Level Analysis of the Development of an Environmental Sensing Device
Using Transcriptional Signatures to Find Cancer Drivers with LURE
Codon bias among synonymous rare variants is associated with Alzheimer's disease imaging biomarker
A Thematic Analysis of the AIDS Literature
Gene Regulation - Session Introduction
Estimation of Protein and Domain Interactions in the Switching Motility System of Myxococcus Xanthus
Mixture Model for Sub-Phenotyping in GWAS
Proteins: Structure, Function and Evolution - Session Introduction
Inference of Personalized Drug Targets via Network Propagation
Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media Data
Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks
Nucleotide Substitutions and the Evolution of Duplicate Genes
TagSNP Selection Based on Pairwise LD Criteria and Power Analysis in Association Studies
Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome
GeneDive: A gene interaction search and visualization tool to facilitate precision medicine
Information Needs and the Role of Text Mining in Drug Development
Functional Trends in Structural Classes of the DNA Binding Domains of Regulatory Transcription Factors
The Training of Next Generation Data Scientists in Biomedicine
Using DNase Digestion Data to Accurately Identify Transcription Factor Binding Sites
Constructing Multi-Resolution Markov State Models (MSMs) to Elucidate RNA Hairpin Folding Mechanisms
Field-Based Similarity Forcing in Energy Minimization and Molecular Matching
A Tree Obscured By Vines: Horizontal Gene Transfer and the Median Tree Method of Estimating Species Phylogeny
Modeling Cellular Processes with Variational Bayesian Cooperative Vector Quantizer
Integrating Microarray and Proteomics Data to Predict the Response of Cetuximab in Patients with Rectal Cancer
Raising the stakeholders: Improving patient outcomes through interprofessional collaborations in AI for healthcare
Scoring Pairwise Genomic Sequence Alignments
Bioinformatics Data Profiling Tools: A Prelude to Metabolic Profiling
Combining Mutual Information with Structural Analysis to Screen for Functionally Important Residues in Influenza Hemagglutinin
Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation
Tradeoff Between No-Call Reduction in Genotyping Error Rate and Loss of Sample Size for Genetic Case/Control Association Studies
Identifying Good Predictions of RNA Secondary Structure
Drug-induced mRNA Signatures Are Enriched for the Minority of Genes that Are Highly Heritable
Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes
DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures
Heritability estimates on resting state fMRI data using the ENIGMA analysis pipeline
ChIPModule: Systematic Discovery of Transcription Factors and Their Cofactors from ChIP-seq Data
Design of a High-Throughput Assay for Alternative Splicing Using Polymerase Colonies
DIGIT: A Novel Gene Finding Program by Combining Gene-Finders
LISA: Accurate reconstruction of cell trajectory and pseudo-time for massive single cell RNA-seq data
Towards Real-Time Control of Gene Expression: Controlling the Hog Signaling Cascade
DNA Steganalysis Using Deep Recurrent Neural Networks
GSE: A Comprehensive Database System for the Representation, Retrieval, and Analysis of Microarray Data
Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002
Simulating the Growth of Viruses
A Powerful Statistical Method for Identifying Differentially Methylated Markers in Complex Diseases
Making Compassionate Use More Useful: Using real-world data, real-world evidence and digital twins to supplement or supplant randomized controlled trials
Discovering Biomedical Relations Utilizing the World-Wide Web
Optimizing Smith-Waterman Alignments
Application of Parameter Optimization to Molecular Comparison Problems
Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions
Exploratory Visual Analysis of Pharmacogenomic Results
Intrinsic Disorder Within and Flanking the DNA-Binding Domains of Human Transcription Factors
Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data
Coevolved Residues and the Functional Association for Intrinsically Disordered Proteins
Analyzing Rate Heterogeneity During Protein Evolution
Multivariate Analysis of Regulatory Snps: Empowering Personal Genomics by Considering Cis-Epistasis and Heterogeneity
Genome-Scale Protein Function Prediction in Yeast Saccharomyces cerevisiae Through Integrating Multiple Sources of High-Throughput Data
An Integrated Framework for Reporting Clinically Relevant Biomarkers from Paired Tumor/Normal Genomic and Transcriptomic Sequencing Data In Support of Clinical Trials in Personalized Medicine
Genome, Pathway, and Interaction Bioinformatics - Session Introduction
Machine Learning Algorithms for Simultaneous Supervised Detection of Peaks in Multiple Samples andCell Types
Playing Biology's Name Game: Identifying Protein Names in Scientific Text
Identifying natural health product and dietary supplement information within adverse event reporting systems
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants
Biodash: A Semantic Web Dashboard for Drug Development
Improvement of Structure Conservation Index with Centroid Estimators
Event Extraction from Biomedical Papers Using a Full Parser
Democratizing data science through data science training
Towards Discovering Structural Signatures of Protein Folds Based on Logical Hidden Markov Models
A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and L
Biomedical Ontologies - Session Introduction
Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods
A Deep Learning Approach for Cancer Detection and Relevant Gene Identification
ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules
A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies
Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm
Training the Next Generation of Quantitative Biologists in the Era of Big Data
Predicting Longitudinal Outcomes of Alzheimer's Disease via a Tensor-Based Joint Classification andRegression Model
Knowledge Driven Binning and PheWAS Analysis in Marshfield Personalized Medicine Research Project Using BioBin
Imputation-based Assessment of Next Generation Rare Exome Variant Arrays
Semantic Similarity Measures as Tools for Exploring the Gene Ontology
Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator
A Fault Model for Ontology Mapping, Alignment, and Linking Systems
Computer-Aided Drug Design - Session Introduction
A New Algorithm for Analysis of Within-Host HIV-1 Evolution
Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF
Striking Similarities in Diverse Telomerase Proteins Revealed by Combining Structure Prediction and Machine Learning Approaches
Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches
Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML
Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association Studies
Adaptive testing of SNP-brain functional connectivity association via a modular network analysis
Towards the Prediction of Complete Protein-Protein Interaction Networks
Pairwise RNA Structure Comparison with Stochastic Context-Free Grammars
Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts
CrowdVariant: a crowdsourcing approach to classify copy number variants
Biofilter as a Functional Annotation Pipeline for Common and Rare Copy Number Burden
Empirical vs. "Rational" Methods of Discovering New Drugs
Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences
Similarity Between the Sequences of Taxol-Selected Peptides and the Disordered Loop of the Anti-Apoptotic Protein, BCL-2
Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device
Proceedings of the 4th Pacific Symposium on Biocomputing, PSB 1999, The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9, 1999
Structures, Phylogenies, and Genomes: The Integrated Study of Protein Evolution - Session Introduction
Sensitivity Analysis for Reversal Distance and Breakpoint Reuse in Genome Rearrangements
Inference of Functional Networks of Condition-Specific Response--A Case Study Of Quiescence In Yeast
Distant Supervision for Cancer Pathway Extraction from Text
Cseq-Simulator: A Data Simulator for CLIP-Seq Experiments
Transcriptional Interactions During Smallpox Infection and Identification of Early Infection Biomarkers
Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences
Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida Albicans
Prediction of the Structure of G-Protein Coupled Receptors and of Bound Ligands with Applications for Drug Design
Information Theoretic Approaches to Biology - Session Introduction
Clustering Context-Specific Gene Regulatory Networks