yusuke1997/dblp-id-title huggingface dataset:
The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors
Revealing Comprehensive Genotype-Phenotype Associations through Logic Relationships
Robustness of Geometrical Shape Descriptors for Molecular Surfaces
Protein motif recognition in DNA sequences containing indel errors
ConReg: Analysis and Visualization of Conserved Regulatory Networks in Eukaryotes
Ontology and functional genomics
Design of the Integrated Atlas of Segmentation Gene Expression in Situ
C-H...pi Interactions in Proteins: A Structural Bioinformatics Study
Registration to a Neuroanatomical Reference Atlas - Identifying Glomeruli in Optical Recordings of the Honeybee Brain
Invited Talk: Linkage Disequilibrium Sharing and TagSNP Portability Between Populations
A method for detecting periodic patterns in sequences
ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters
High Throughput Sequence Annotation Server
Identification and Measurement of Neigbor Dependent Nucleotide Substitution Processes
Identification of the significant conformational features of functional sites in B-DNA
SWEET - A quick Way to generate reliable 3D Structures of Carbohydrates from Sequence Information alone
MPI-ClustDB: A fast String Matching Strategy Utilizing Parallel Computing
Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold Recognition
Invited Talk: SARS molecular epidemiology and SARS-CoV evolution: Combating an emerging infectious disease with the regimen of genomics and bioinformatics
Dynamics in a time averaged stochastic dynamic simulation compared to essential dynamic methods applied to ribonuclease T1
Estimating Large Scale Scale Signaling Networks through Nested Effects Models from Intervention Effects in Microarray Data
Onthological design patternsfor the integration of molecular biological information
A Model of Specificity and Selectivity of Mammalian Cytochrome P450 Monooxy-genases
Expansion of the 16S and 23S Ribosomal RNA Mutation Databases
Quantum chemical ab initio study on an unusual water-mediated uracil-cytosine base pair
Prediction of conformational switching in RNA
Structural Local Multiple Alignment of RNA
SequenceJuxtaposer: Fluid Navigation For Large-Scale Sequence Comparison in Context
An Approach to Finding Short Tandem Repeats in Complete Genomes
Towards Evaluation of Docking Hypotheses using elastic Matching
MATCH TM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes
Unbiased Protein Interface Prediction Based on Ligand Diversity Quantification
Pathway alignment: Application in the comparative analysis of glycolysis
GoPubMed: ontology-based literature search applied to Gene Ontology and PubMed
The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany
Two Graph-based Approaches for Finding Cross-species Conserved Gene Orders
Asia Pacific Bioinformatics Network
Electronical and Data-Processing Components of a Modular Flow-Cytometer for Use in Microbiological Research
MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks
A Relational Macromolecular Structure Database
A New Method for the Design of Degenerate Primers and its Use to Identify Homologues of Apomixis-associated Genes in Brachiaria
Utilization of ordinal response structures in classification with high-dimensional expression data
Functional Genomics - an integrated approach to the biosiences
A genetic algorithm for designing gene family specific oligonucleotide sets used for hybridization. The G Protein-coupled receptor Protein superfamily.
Search for Native Conformation of Organic Molecules by Genetic Algorithms
Immune Response toward Auto-Ag and Growing-Ag as a Funetion of Network Connectivity
Lipase Engineering Database
A CORBA server for the EMBL Nucleotide Sequence Database: presentation of a first full implementation (EMCORBA v2)
Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs
Self Organization of Individual Intelligence and Emergence of Communication in an Artificial Organism Population
Clustering of non-polar contacts in proteins
Automatic annotation of genomic date in a high throughput sequencing environment: II. Setup of distributed processing in a UNIX Cluster
A Study on the Empirical Support for Prior Distributions on Phylogenetic Tree Topologies
Pre- and Postfiltering in Protein Docking
A new Method for Unification of Existing Protein Structure- and Sequence-Families
Singular value decomposition for feature selection in gene chips
New methods for joint analysis of biological networks and expression data
Clustering Protein Sequences ? Structure Prediction by Transitive Homology
An Information Theoretic Analysis Of Correlation Among Amino Acid Sites In bHLH Protein Domains
Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae
MethDB - a relational DNA-Methylation-Database
BRENDA the Information System for Enzymes and metabolic Information
Application of Analysis of Variance Schemes to Expression Data
German Conference on Bioinformatics GCB 2006, 19.09. 2006 - 22.09. 2006 in Tübingen, Germany
The EMBL Nucleotide Sequence Database at the European Bioinformatics Institute (EBI): Data Acquisition
Genome Sequence Assembly Using Trace Signals and Additional Sequence Information
Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT
Self-Organization of Trail Networks using Active Brownian Particles
Designing Binding Pockets on Protein Surfaces using the A* Algorithm
Qualitative reasoning on gene control and reproduction demonstrated on lambda phage growth
PanCake: A Data Structure for Pangenomes
Proceedings of the German Conference on Bioinformatics, GCB 2008, September 9-12, 2008, Dresden, Germany
Reconstructing Metabolic Pathways with New Enzyme Classification
High-throughput molecular dynamics simulations: Long and short range effects of mutations on substrate specificity
Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules
MISUR: Motif Identification and Structure Refinement Tool
Migrating to an Object-Oriented Protein Sequence Database
Proceedings of the German Conference on Bioinformatics, GCB 1997, Kloster Irsee, Bavaria, Germany, September 1997
Atomic patch similarity as a criterion of evolutionary relationship between proteins
A novel method for automatic and reliable functional annotation of proteins
Memory Efficient Folding Algorithms for Circular RNA Secondary Structures
Understanding of SMFS Barriers by Means of Energy Profiles
Biochemical Pathways As a Reaction Database
Carbohydrates: Second-Class Citizens in Biomedicine and Bioinformatics?
Online Transitivity Clustering of Biological Data with Missing Values
Attacking Generalized tree Alignment by a Deferred Path Heuristic
A generic system for the management of sequence annotations
TRANSFAC®_YEAST
The Biocomputing Service Group at the DKFZ
HGBase, a database of intra-genic DNA sequence polymorphisms
A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data
Regexpcount, a Symbolic Package for Counting Problems on Regular Expressions and Words
Correlation of Gene Expression as Measured by Different Assays
Quantitative approach to the analysis of complex hormonal signalling
Invited Talk: Fast Track to Disease-Specific Drugs? The Impact of In-Situ Proteomics Imaging (Toponomics)
Comparison of Human Protein-Protein Interaction Maps
TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences
Statistical Segmentation of Molecular Surfaces
Integrative machine learning approach for multi-class SCOP protein fold classification
Analyzing Large enzymatic reaction networks
Shape Distributions and Protein Similarity
Pathway analysis in metabolic databases via differetial metabolic display (DMD)
European Mfold Server
Developing a groupware system for annotating Protein Sequences Using Object Oriented Technology
Automatic annotation of genomic date in a high throughput sequencing environment: I. Comparison of analysis programs
Languages, Automata, and Macromolecules
Fast Protein Fold Recognition and Accurate Sequence to Structure Alignment
Distributed Computing in Genomic Mapping: Building Contigs on the Web
Effective Pre- and Post-Processing for the Determination of Highly Sensitive Oligonucleotidesto be Used on DNA Microarrays
Regional and Time-resolved Mutation Patterns of the Human Genome
Building a new Rotamer Library for Protein-Protein Docking using energy calculations and statistical approaches
Frontmatter, Table of Contents, Preface, Programm Committee, Supportes and Sponsors, Index of Authors
Neural Network Analysis of SBH Signatures
From alignment to RNA strucfure drawing
TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes
C-H..0 interactions in proteins and protein complexes
Comparing Fragmentation Trees from Electron Impact Mass Spectra with Annotated Fragmentation Pathways
Construction of stochastic context trees for genetical texts
Prediction and uncertainty in the analysis of gene expression profiles
2D Projections of RNA Folding Landscapes
Stochastic Language Models for Content Based DNA Sequence Classification
Three Models of Gene Regulation in E. coli
Models of Collective Motion in Systems with Self-propelled Objects
Fast Protein Fold Recognition and Accurate Sequence-Structure Alignment
Characterizing metagenomic novelty with unexplained protein domain hits
A Simple Folding Model for HP-type Lattice Proteins
RNA-seq driven gene identification
Syntenic Layout of Two Assemblies of Related Genomes
Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations
Genetic variation as a means to reconstruct human history
Identifying drug resistance-associated patterns in HIV genotypes
Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes
A Biological Taxonomy Database System an World-Wide Web
EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base
Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data
Exploiting Biology's Rosetta Stone(s)
Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance
AGeWa (Automatic Gene Walk): an automatic tool for ASO design
[Invited Lecture] Automated genome analysis using MAGPIE
Crossing-over on Languages. A Formal Representation of the Chromosome Recombination
Protein Structure Alignment through a Contact Topology Profile using SABERTOOTH
Consecutive KEGG Pathway Models for the Interpretation of High-throughput Genomics Data
Genlight: An Interactive System for High-throughput Sequence Analysis and Comparative Genomics
Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways
Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences
Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds
Predicting the Subcellular Location of a Protein
Metabolic Pathways and the Detection of Inborn Errors
S/MARt DB: A database on chromatin organizing S/MAR regions
Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl
Invited Talk: Chemistry meets Biology: Chemogenomics in Drug Discovery
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
New scoring Schemes for Protein fold recognition based on Voronoi contacts
Proceedings of the German Conference on Bioinformatics, GCB 2003, October 12-14, 2003, Neuherberg/Garching near Munich, Germany
Information theoretical design of sets of DNA oligomers for hybridization fingerprinting experiments
An application of genetic algorithm and parallel computing method to the protein structure comparison problem
Assembly of Genomic Sequences Assisted by Automatic Finishing
[Invited Lecture] The other folding problem: Algorithms and thermodynamics for nucleic acid secondary structure
[Invited Lecture] A Structural Census of Genomes: Comparing Bacterial, Eukaryotic, and Archaea Genomes in Terms of Protein Structure
Finding and decrypting of promoters contributes to the elucidation of gene function
Program "Gene Discovery" for Pattern Matching in Promoter Sequences
On Weighting Schemes for Gene Order Analysis
Feature Based Representation and Detection of Transcription Factor Binding Sites
Functional Evaluation of Domain-Domain Interactions and Human Protein Interaction Networks
Modeling Molecular Evolution - A Challenge for Bioinformatics
An Entity-association Model for Comparative Maping
Modular modeling correlates with functional promoter diversification of human MHC class I promoters although nucleotide sequence conservation is not correlated
A Million Annotations for the Molecular Biologist
Thermodynamics of RNA-RNA Binding
Theoretical Studies on the Binding of SN6999 to the Minor Groove of DNA
Learning Hidden Markov Model Topology
Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets
High-Precision Function Prediction using Conserved Interactions
A Method for Fast Approximate Searching of Polypeptide Structures in the PDB
Automatic annotation of genomic date in a high throughput sequencing environment: V. Exon Predictions with EST's and CDS's on Genomic Sequences
PGAAS: A prokaryotic genome assembly assistant system
Topology in Phenotype Space
The Computer Program IN_PROT.3D Alignment and Visualization of Protein Molecules an IBM Compatible (Notebook) Computers
Structure prediction in an HP-type lattice with an extended alphabet
Topological Analysis and Visualisation of large Signalling Networks: The TGF-beta Signal Transductionin Eukaryotic Systems
Automated Bond Order Assignment as an Optimization Problem
Detecting direct correlations between positions in multiple alignments of amino acid sequences
Compression of proteome gel images using complex wavelet transform
Structural annotation of the human genome
Planning isotopomer measurements for estimation of metabolic fluxes
A Computational Support for the Access to Integrated Molecular Biology Data
Making predictions about robustness and flexibility from metabolic network structure
Multiple sequence alignment with user-defined constraints
A Comparative Study of Robust Feature Detectors for 2D Electrophoresis Gel Image Registration
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes
Computation and Visualization of Protein Topology Graphs Including Ligand Information
Protein Structure Comparison Based on Fold Evolution
Conservation of protein-protein interactions among Ascomycota species
Sequence Analysis with Distributed Resources: A WWW-Based Course
Informatics, genomics, proteomics and phylogenetics by the yeast Eurofanatics
How optimal is the genetic code?
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats
Invited Talk: Proteins of SARS coronavirus - experimental and theoretical studies
A Systemsatic Approach to Finding New Lead Structures Having Biological Activity
Metabolic Pathways in the Context of Genomics
German Conference on Bioinformatics 2012, GCB 2012, Jena, Germany, September 20-22, 2012
GeneView: A GenBank-Entry Visualisation Tool
Automatic annotation of genomic date in a high throughput sequencing environment: III. Genetic Data Management Tool (GDMT)
On the Effects of Transcription Factor Properties on the Information Content of Binding Sites
Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series
Efficient Computer algebraic Methods to analyze carbon labeling experiments
A new method for modeling protein evolution
DOPE A web-based program system for the design of oligonucleotide primers
Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks
Geometric Docking of Transmembrane Structures
The transformation distance: A dissimilarity measure based an movements of segments
History Binding Signature - (Extended Abstract)
Fast and Error-Free Negacyclic Integer Convolution Using Extended Fourier Transform
Effective Enumeration of Infinitely Many Programs that Evade Formal Malware Analysis
Polynomial Time k-Shortest Multi-criteria Prioritized and All-Criteria-Disjoint Paths - (Extended Abstract)
Deep Neural Networks for Encrypted Inference with TFHE
A Planning Approach to Monitoring Computer Programs' Behavior
Polynomial Adaptation of Large-Scale CNNs for Homomorphic Encryption-Based Secure Inference
Temporal Pattern-Based Malicious Activity Detection in SCADA Systems (Brief Announcement)
LLMSecCode: Evaluating Large Language Models for Secure Coding
PPAuth: A Privacy-Preserving Framework for Authentication of Digital Image
Hierarchical Ring Signatures Immune to Randomness Injection Attacks
Botnet Attack Identification Based on SDN
Brief Announcement: Anonymous Credentials Secure to Ephemeral Leakage
Faster Post-Quantum TLS Handshakes Without Intermediate CA Certificates
Robust Secure Aggregation for Co-located IoT Devices with Corruption Localization
Mutual Accountability Layer: Accountable Anonymity Within Accountable Trust
Hollow-Pass: A Dual-View Pattern Password Against Shoulder-Surfing Attacks
SSPT: Shallowest Shortest Path Tree - (Short Paper)
Sure! Here's a Short and Concise Title for Your Paper: "Contamination in Generated Text Detection Benchmarks"
HBSS: (Simple) Hash-Based Stateless Signatures - Hash All the Way to the Rescue! - (Preliminary Version)
CANdito: Improving Payload-Based Detection of Attacks on Controller Area Networks
Toward Self-stabilizing Blockchain, Reconstructing Totally Erased Blockchain (Preliminary Version)
Using Noisy Binary Search for Differentially Private Anomaly Detection
A Generalized Wiener-Type Attack Against an RSA-Like Cryptosystem
Tortoise and Hares Consensus: The Meshcash Framework for Incentive-Compatible, Scalable Cryptocurrencies
Cyber Security, Cryptology, and Machine Learning - 8th International Symposium, CSCML 2024, Be'er Sheva, Israel, December 19-20, 2024, Proceedings
Avatar PLC/SCADA: Cloud Half-Twin for Industrial Control Systems - (Short Paper)
Insights into Learning Broadcast Protocols - (Short Paper)
Stylometric Authorship Attribution of Collaborative Documents
Programmable Bootstrapping Enables Efficient Homomorphic Inference of Deep Neural Networks
Cyber Security, Cryptology, and Machine Learning - 6th International Symposium, CSCML 2022, Be'er Sheva, Israel, June 30 - July 1, 2022, Proceedings
Reminisce for Securing Private-Keys in Public
Privacy Preserving DCOP Solving by Mediation
DepthStAr: Deep Strange Arguments Detection
Cyber Security Cryptography and Machine Learning - 5th International Symposium, CSCML 2021, Be'er Sheva, Israel, July 8-9, 2021, Proceedings
Improving Physical Layer Security of Ground Stations Against GEO Satellite Spoofing Attacks
Reinforcement Based User Scheduling for Cellular Communications
Generating One-Hot Maps Under Encryption
Non-stopping Junctions via Traffic Scheduling
Efficient, Reusable Fuzzy Extractors from LWE
Zero-Knowledge to the Rescue: Consistent Redundant Backup of Keys Generated for Critical Financial Services
Beneath the Cream: Unveiling Relevant Information Points from CrimeBB with Its Ground Truth Labels
Automatic Detection of Water Stress in Corn Using Image Processing and Deep Learning
DNS-Morph: UDP-Based Bootstrapping Protocol for Tor
Transfer Learning for Time Series Classification Using Synthetic Data Generation
Predictive Enhancement of RBAC Policies Using Access Log Analytics - (Short Paper)
The Use of Performance-Countersto Perform Side-Channel Attacks
Path Optimization Using DQN in the SCION Internet Architecture
Smart Cybercrime Classification for Digital Forensics with Small Datasets
Brief Announcement: A Technique for Software Robustness Analysis in Systems Exposed to Transient Faults and Attacks
Post Quantum Lightweight OWF Candidates - Based on Theoretically Secure Primitives: Xors, Error Detection Codes, Permutations, Polynomials, Interaction, and Nesting (Short Version)
Use of Blockchain for Ensuring Data Integrity in Cloud Databases
KNN+X
Brief Announcement: Gradual Learning of Deep Recurrent Neural Network
Monitoring Time Series with Missing Values: A Deep Probabilistic Approach
Comparison of DNS Based Methods for Detecting Malicious Domains
Minimally Intrusive Access Management to Content Delivery Networks Based on Performance Models and Access Patterns
Location Problems with Privacy
Distributed Verifiable Random Function with Compact Proof
Beyond Replications in Blockchain - On/Off-Blockchain IDA for Storage Efficiency and Confidentiality (Brief Announcement)
Amended Cross-Entropy Cost: An Approach for Encouraging Diversity in Classification Ensemble (Brief Announcement)
On the Overflow and p-adic Theory Applied to Homomorphic Encryption
Predicting the Direction of Changes in the Values of Time Series for Relatively Small Training Samples
Security Ranking of IoT Devices Using an AHP Model
Physical Layer Security over Wiretap Channels with Random Parameters
Reconstructing C2 Servers for Remote Access Trojans with Symbolic Execution
Correlations Between (Nonlinear) Combiners of Input and Output of Random Functions and Permutations
Enhancing Image Steganalysis with Adversarially Generated Examples
Similarity-Based Retrieval over Homomorphic Encryption
Challenges in Timed-Cryptography: A Position Paper (Short Paper)
Setting Up an Anonymous Gesture Database as Well as Enhancing It with a Verbal Script Simulator for Rehabilitation Applications
Fast Polynomial Inversion for Post Quantum QC-MDPC Cryptography
Rethinking Identification Protocols from the Point of View of the GDPR
Practical Improvements on BKZ Algorithm
Spoofing-Robust Speaker Verification Based on Time-Domain Embedding
Linear Cryptanalysis Reduced Round of Piccolo-80
Intercepting a Stealthy Network
Everything Is in the Name - A URL Based Approach for Phishing Detection
Entanglement-Based Mutual Quantum Distance Bounding
Cyber Security, Cryptology, and Machine Learning - 9th International Symposium, CSCML 2025, Be'er Sheva, Israel, December 4-5, 2025, Proceedings
Bitcoin+: Cheap Support for Complex Spending Conditions in a UTXO Ledger
A New Interpretation for the GHASH Authenticator of AES-GCM
Scalable Attack Path Finding for Increased Security
A Probabilistic Model for Rounding Errors: A New Look at the Table-Maker's Dilemma
From Adversity to Advantage: Diffusion Models for Improved Detection Under Attack
Machine Learning-Based Malware Detection on macOS - (Short Paper)
An Access Control Model for Data Security in Online Social Networks Based on Role and User Credibility
A Desynchronization-Based Countermeasure Against Side-Channel Analysis of Neural Networks
Cyber Security, Cryptology, and Machine Learning - 7th International Symposium, CSCML 2023, Be'er Sheva, Israel, June 29-30, 2023, Proceedings
Adversaries Strike Hard: Adversarial Attacks Against Malware Classifiers Using Dynamic API Calls as Features
BFLUT Bloom Filter for Private Look Up Tables
Super-Teaching in Machine Learning
Secure Non-interactive User Re-enrollment in Biometrics-Based Identification and Authentication Systems
Building Regular Registers with Rational Malicious Servers and Anonymous Clients
Pseudo-random Walk on Ideals: Practical Speed-Up in Relation Collection for Class Group Computation
Governance and Regulations Implications on Machine Learning (Brief Announcement)
Improved Range Searching and Range Emptiness Under FHE Using Copy-and-Recurse
Enhancing Ransomware Classification with Multi-stage Feature Selection and Data Imbalance Correction
Provable Imbalanced Point Clustering
An Information-Flow Control Model for Online Social Networks Based on User-Attribute Credibility and Connection-Strength Factors
New Goal Recognition Algorithms Using Attack Graphs
A Survey of Security Challenges in Automatic Identification System (AIS) Protocol
Time, Memory and Accuracy Tradeoffs in Side-Channel Trace Profiling
Efficient Construction of the Kite Generator Revisited