yusuke1997/dblp-id-title huggingface dataset:
An Ontological Approach to Developing a Unified and Interdisciplinary Framework for Aging
Multiple Ontologies in Healthcare Information Technology: Motivations and Recommendation for Ontology Mapping and Alignment
Composite Annotation for Heart Development
miRNAO: An Ontology for microRNAs
An Analysis of Differences in Biological Pathway Resources
Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology
Building a Radiation Therapy Ontology
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics
Developing Graphic Libraries to Accompany the Craniofacial Human Ontology
Concretizing Plan Specifications as Realizables Within the OBO Foundry
(Re-)bridging the Anatomy Ontologies with SSSOM
Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology
Rapid Development of an Ontology of Coriell Cell Lines
The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey
Towards the Development of an Opioid Misuse Ontology
Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic Similarity
A method for semi-automatic extension of a middle-layer ontology
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration
ICEO: a Biological Ontology for Representing and Analyzing the Bacterial Integrative and Conjugative Element
Test-Driven Ontology Development in Protégé
Towards a Body Fluids Ontology: A Unified Application Ontology for Basic and Translational Science
Building a Molecular Glyco-phenotype Ontology to Decipher Undiagnosed Diseases
Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard
What is a Risk? A Formal Representation of Risk of Stroke for People with Atrial Fibrillation
An Expertise Ontology for Cooperative Extension
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases
Classifying Processes and Basic Formal Ontology
Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB)
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28 - September 1, 2023
The Ontology of Physics for Biology - A Companion to Basic Formal Ontology
Tripartite Term Enrichment Analysis of Multiple Sclerosis Patient Reported Outcomes
Shaping the Semantics of Healthy and Sustainable Food Systems: a Participatory Metaframework-based Approach
Mapping a database schema to the structure of an existing ontology
Aligning Research Resource and Researcher Representation: The eagle-i and VIVO Use Case
Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis
The Ontology of Adverse Events in 2022
Leveraging Ontologies within the National Microbiome Data Collaborative
Using Biomedical Ontologies for Data Representation and Management in the Mouse Genome Informatics (MGI) System
Towards an Ontology-Driven Machine Learning Approach to the Diagnosis Classification Problem in Autism Spectrum Disorder
Environmental Semantics for Sustainable Development in an Interconnected Biosphere
Towards an Ontology of Schizophrenia
PopHR: An Integrated Semantic Framework for Population Health Surveillance
OntoOrpha: An Ontology to Support Edition and Audit of Knowledge of Rare Diseases in ORPHANET
Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants
Facets, Tiers and Gems: Ontology Patterns for the Hypernormalisation
Development of a BFO-Based Informed Consent Ontology (ICO)
Leveraging Biomedical Ontologies to Boost Performance of BERT-Based Models for Answering Medical MCQs
Can a Convolutional Neural Network Support Auditing of NCI Thesaurus Neoplasm Concepts?
Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology terms
Semantic Representation of Preclinical Data in Radiation Oncology
Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion
Computational Classification of Phenologs Across Biological Diversity
Reporting Adverse Events: Basis for a Common Representation
2015 Disease Ontology update: DO's expanded curation activities to connect disease-related data
A Classification of Instructions in Drug Prescriptions and Pharmacist Documents
The CHRONIOUS Ontology Suite: Methodology and Design Principles
Using a Reference Ontology with Semantic Similarity in Ontology Alignment
An ontological analysis of diagnostic assertions in electronic healthcare records
Measuring Cognitive Functions: Hurdles in the Development of the NeuroPsychological Testing Ontology
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing vaccine adverse events
Introduction to the Logic of Definitions
Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and Extensions
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal
Towards a Standard Ontology Metadata Model
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks
Development of an Image Data Set Class: Its Role in Biomedical Imaging and Neuroimaging Research
OGG: a Biological Ontology for Representing Genes and Genomes in Specific Organisms
Making Biomedical Data Usable: NIH Community-Based Data and Metadata Standards Efforts
OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems
Grounding Realizable Entities
Wikidata WikiProject COVID-19: Modelling the Pandemic in Real Time (short paper)
Mapping WordNet to the Basic Formal Ontology using the KYOTO ontology
Waves and fields in bio-ontologies
Ontology-based Modeling, Representation, and Analysis of Biomarkers in Healthy and Disease Kidney Tissue
Annotating Experimental Records Using Ontologies
Enhancing Semantic Analysis of Pathology Reports
Analysis of Vaccine-related Networks using Semantic MEDLINE and the Vaccine Ontology
eXtensible Ontology Development (XOD) using Web-based Ontoanimal Tools
Horned-OWL: Building Ontologies at Big Data Scale
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis
Ontology-based reinterpretation of the SNOMED CT context model
Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology
Towards an integrated knowledge system for capturing gene expression events
Quality of Care Domain Modeling in Cancer: A Semantic Approach
Foundations for an Ontology of Nudges
Natural Language Definitions for the Leukemia Knowledge Domain
Compare the OBO Foundry Principles with the FAIR and TRUST Principles
The Identity and Mereology of Pathological Dispositions
Towards Principles of Ontology-Based Annotation of Clinical Narratives
ChEBI for systems biology and metabolic modelling
Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports
Ontology-Enhanced Representations of Non-Image Data in The Cancer Image Archive
Enhancing Childhood Nutrition Data with Open Biomedical Ontologies
Representing Modification Sites in PRO
LUMC Clinical Ontology for Biomedical Research
Clinical Documents and Their Parts
OGG-Bac: Ontological Representation of Orthologous Bacterial Genes
An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing
Towards an Adverse Event Reporting Ontology
Maintaining the Drug Ontology: an Open-source, Structured Product Label API for the JVM
OWL-based form generation and structured data acquisition
OWLmaker: An Application for Generating OWL Files from Tabular Text
Ontology Representation for Cholangiocarcinoma
Efficient Construction of a New Ontology for Life Sciences by Sub-classifying Related Terms in the Japan Science, Technology Agency Thesaurus
uc_Milk: An Ontology for Scientifically-based Unambiguous Characterization of Mammalian Milk, their Composition and the Biological Processes Giving Rise to their Creation
Toward A Dairy Ontology to Support Precision Farming
HyQue: A Semantic Web tool for evaluating scientific hypotheses
Enabling semantic search in a bio-specimen repository
Introducing WebProtégé 2 as a Collaborative Platform for Editing Biomedical Ontologies
Drug Target Prediction for Colorectal Cancer by Combining Ontology and Network Approaches
Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies
Challenges in Realism-Based Ontology Design: A Case Study on Creating an Ontology for Motivational Learning Theories
BLUSNO: A System for Orientation, Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks
Logical Axiomatization of the Evidence & Conclusion Ontology (ECO) by Integrating External Ontology Classes
Highly literate ontologies
NIDM-Experiment: An Ontology for Annotating Neuroscientific Data
Causation and the River Flow Model of Diseases
OBO Academy: Training Materials for Bioontologists
Expanding the eNanoMapper Ontology (short paper)
Building a Shared Ontology Use Patterns Repository
Annotating biomedical ontology terms in electronic health records using crowd-sourcing
CIDS: An Ontology for Representing Social and Environmental Impact
Adding Evidence Type Representation to DIDEO
Efforts toward a More Consistent and Interoperable Sequence Ontology
Empowering Standardization of Cancer Vaccines Through Ontology: Enhanced Modeling and Data Analysis
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), Virtual conference hosted in Bolzano, Italy, September 17, 2020
Credentials in the Occupation Ontology
An Ontology for Mammography Screening Recommendation
MutD - A PubMed Scale Resource for Protein Mutation-Disease Relations through Bio-Medical Literature Mining
OntoFox and its Application in Development of Brucellosis Ontology
A Novel Representation of Terms Related to Infectious Disease Epidemiology for Epidemic Modeling: The Apollo Structured Vocabulary and Pre-existing Representations
Towards a Framework for Meaning Negotiation and Conflict Resolution in Ontology Authoring
Building An Ecological Mental Functioning Ontology: An Informatics Perspective
Exploitation of ontologies for the management of clinical archetypes in ArchMS
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016
The Potential of Ontologies for the Empirical Assessment of Machine Learning Techniques in Operational Oceanography
LABO: an Ontology for Laboratory Test Prescription and Reporting
Applying Rigidity to Standardizing OBO Foundry Candidate Ontologies
FoodOn: A Semantic Ontology Approach for Mapping Foodborne Disease Metadata
GOfox: Semantics-based simplified hierarchical classification and interactive visualization to support GO enrichment analysis
FAIRDOM approach for semantic interoperability of systems biology data and models
Towards a Consistent and Scientifically Accurate Drug Ontology
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018
Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies
The Cell Line Ontology Integration and Analysis of the Knowledge of LINCS Cell Lines
Classifying Adverse Events from Clinical Trials
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis
Bringing epidemiology into the Semantic Web
Identitas: A Better Way To Be Meaningless
OncoCL: A Cancer Cell Ontology
Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a Paper
An Ontological Representation of Adverse Drug Events
Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse
A Data Structure for the Implementation of Referent Tracking Systems
Ontology Integration for Discovering Bioresources Contributing to Medical Science Research
CancerMine: Knowledge Base Construction for Personalised Cancer Treatment
Semantic query expansion for fuzzy proximity information retrieval model
Panacea, a Semantic-enabled Drug Recommendations Discovery Framework
A Falsification Approach to Create and Check Ontology Definitions
Compound matching of biomedical ontologies
Supporting Database Annotations and Beyond with the Evidence & Conclusion Ontology (ECO)
DREAM 9: An Acute Myeloid Leukemia Prediction Big Data Challenge
Aligning Pharmacologic Classes Between MeSH and ATC
Pain Assessment Terminology in the NCBO BioPortal: Evaluation and Recommendations
Summarising scRNAseq Expression Data in FlyBase
What's in a Genotype?: An Ontological Characterization for Integration of Genetic Variation Data
Reasoning over Anatomical Homology in the Phenoscape KB
One Tagger, Many Uses: Illustrating the Power of Ontologies in Dictionary-based Named Entity Recognition
An ontologically well-founded framework for modelling Business Organizations, Processes and Services
Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis
Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011
AberOWL: an ontology portal with OWL EL reasoning
The Zebrafish Experimental Conditions Ontology Systemizing Experimental Descriptions in ZFIN
An Ontological Representation of Sex and Gender Information (short paper)
Semantic Digitization of Experimental Data in Biological Sciences
The Vertebrate Bridging Ontology (VBO)
Coverage of Rare Disease Names in Clinical Coding Systems and Ontologies and Implications for Electronic Health Records-Based Research
FIDEO: Food Interactions with Drugs Evidence Ontology
An Ontologic Approach to Leverage Surgical Training Data Development and Application of a CranioMaxilloFacial Ontology
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes
CARO 2.0
QUESTO - An Ontology for Questionnaires
Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO)
Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository
Post-Traumatic Stress Disorder (PTSD) Ontology and Use Case
Biomedical Ontology Matching Using the AgreementMaker System
Use of Text Mining for Experimental Factor Ontology Coverage Expansion in the Scope of Target Validation
An Ontology for Healthcare Systems
A Quality Assurance Methodology for ChEBI Ontology Focusing on Uncommonly Modeled Concepts
Representing Causation: A Dispositional Perspective
Scrutinizing the Relationships Between SNOMED CT Concepts and Semantic Tags
Catalog for Ontologies Towards Semantic Integration Across Environmental Health Science Research Data
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30 - August 2, 2019
BioCconvert: A Conversion Tool Between BioC and PubAnnotation
Translating Medical Vocabularies via the Unified Medical Language Systems
Pharmacological Class Data Representation in the Web Ontology Language (OWL)
Proceedings of the 5th International Conference on Biomedical Ontology, ICBO 2014, Houston, Texas, USA, October 8-9, 2014
Human Cell Atlas Ontology
HAO: Hearing Aid Ontology
An OGMS-based Model for Clinical Information (MCI)
Using Equivalence Axioms from the Mammalian Phenotype Ontology to Facilitate Phenotype and Expression Comparisons
Global Agricultural Concept Scheme: A Hub for Agricultural Vocabularies
Nutriknow: a comprehensive foods-for-health knowledge repository
Version Control for Interdependent Ontologies: Challenges and First Propositions
Representing biomedical knowledge: A view from the philosophy of science
Collaborative Development of a Process Chemistry Domain Ontology, PROCO
Exploring the Evolution of the Gene Ontology and its Impact on Enrichment Analysis
Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights
An Insight into Food Semantics: Review, Analysis, and Lessons Learnt over Food-Related Studies (short paper)
Analysis of SNOMED "Bleeding" Concepts & Terms
A Community Effort for COVID-19 Ontology Harmonization
Improvements to the Drosophila anatomy ontology
The NEMO Analysis Pipeline: EEG Pattern Extraction and Ontology-based Classification
NAPRALERT, from a Historical Information Silo to a Linked Resource Able to Address the New Challenges in Natural Products Chemistry and Pharmacognosy
Representation of Part-Whole Relationships in SNOMED CT
Ontologies in the Fish Tank: Using the Zebrafish Anatomy Ontology with Other OBO Ontologies to Annotate Expression and Phenotype
ON TO A Better Path to Choose Your Best Ontologies
Coordinated Evolution of Ontologies of Informed Consent
Aligning the Parasite Experiment Ontology and the Ontology for Biomedical Investigations Using AgreementMaker
The Pharmacology Workspace: A Platform for Drug Discovery
Universal-Particular Distinction in Biomedical Ontologies
Populous: A Tool for Populating an Ontology
The SWO Project: A Case Study for Applying Agile Ontology Engineering Methods for Community Driven Ontologies
OLOBO: A New Ontology for Linking and Integrating Open Biological and Biomedical Ontologies
Adapting Disease Vocabularies for Curation at the Rat Genome Database
Uc_Sense: An Ontology for Scientifically-based Unambiguous Characterization of Sensory Experiences
The Integrative use of Anatomy Ontology and Protein-protein Interaction Networks to Study Evolutionary Phenotypic Transitions
Ontological Modeling of Two-Component Regulatory Systems
Representing Local Identifiers in a Referent-Tracking System
Improving Biomedical Data by Improving the Information Artifact Ontology
Towards a Schistosomiasis Ontology (IDOSCHISTO) Extending the Infectious Disease Ontology
Standardization of the Histopathology Cancer Report: An Ontological Approach
Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach
OxO - A Gravy of Ontology Mapping Extracts
Disease Named Entity Recognition Using NCBI Corpus
Ontorat web server for automatic generation and annotations of new ontology terms
Foundations for a Realism-based Drug Repurposing Ontology
Brain, Biomedical Knowledge Manipulation
Towards the Integration of Abnormality in Diseases
Protégé 5.5 - Improvements for Editing Biomedical Ontologies
An Ontology of Software Evolution
Bridging Multiple Ontologies: Representation of the Liver Immune Response
Building a Drug Ontology based on RxNorm and Other Sources
Survey on Defining Practices in Ontologies: Report Summary
ClinicalKey: Terminology driven Semantic Search
River Flow Model of Diseases
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes
The Linked Data Modeling Language (LinkML): A General-Purpose Data Modeling Framework Grounded in Machine-Readable Semantics
Ontology customization for biomedical informatics
Ontology Development Strategies and the Infectious Disease Ontology Ecosystem
Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems
Collaborative Workspaces for Pathway Curation
The OntoWoH Ontology - a Women's Health Reference Ontology Detailing the Fragment of Climacteric and Menopause
Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO Project
Ontology-based Integration of Consumer Data and EHR Systems to Fill Gaps in Social Determinants of Health Data
Next generation ontology browser
A Nanopublication Framework for Biological Networks using Cytoscape.js
Humane OWL: RDF and OWL for Humans
Enhancing the Human Phenotype Ontology for Use by the Layperson
ROBOT: A command-line tool for ontology development
An Ontological Representation of Oral Dysbiosis
A Robust, Self-Training Classifier for Medication Strings, with Quantitative and Semantic Confidence Metrics
Bridging Vaccine Ontology and NCIt vaccine domain for cancer vaccine data integration and analysis
Towards an Ontology for Representing Malignant Neoplasms
NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement
Ontology-Based Classification of Radiological Procedures for Consistent Sharing in Clinical Data Warehouses
Cardiovascular Health and Physical Activity: A Model for Health Promotion and Decision Support Ontologies
Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches
Quality of Care Metric Reporting from Clinical Narratives: Assessing Ontology Components
Diagnostic criteria and clinical guidelines standardization to automate case classification
Easy Extraction of Terms and Definitions with OWL2TL
Large-scale Semantic Indexing with Biomedical Ontologies
Formal representation of disorder associations in SNOMED CT
Ontological Framework for Representation of Tractable Flavor: Food Phenotype, Sensation, Perception
KOSonto: an Ontology for Knowledge Organization Systems, Their Constituents, and Their Referents
One Empirical Study, Three Tests of Translation, Many Questions on Biomedical Ontologies: Limited Contribution of MeSH Terms to Effective Literature Searches on 'Health-Related Values'
Planteome Gene Annotation Enrichment Analysis
An Ontological Model for the (Digital) Patient (short paper)
Exploring the Use of Ontology Components for Distantly-Supervised Disease and Phenotype Named Entity Recognition
Representing Intracoronal Tooth Restorations in the Ontology for Oral Health and Disease
The UNEP Ontologies and the OBO Foundry
Tailoring the NCI Thesaurus for Use in The OBO Library
Modularization for the Cell Ontology
The Phenoscape Knowledgebase: Tools and APIs for Computing Across Phenotypes from Evolutionary Diversity and Model Organisms
owl_cpp , a C++ Library for Working with OWL Ontologies
A Quality-Assurance Study of ChEBI
Using Failure Modes, Mechanisms, and Effects Analysis in Medical Device Adverse Event Investigations
Epistemological Issues in Information Organization Instruments: Ontologies and Health Information Models
AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events
CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView
The NCBO Annotator: Ontology-Based Annotation as a Web Service
On the Statistical Sensitivity of Semantic Similarity Metrics
An Interactive Dashboard for Ontology Quality Monitoring
A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT
Does the Foundational Model of Anatomy Ontology Provide a Knowledgebase for Learning and Assessment in Anatomy Education?
Comparing the Representation of Medicinal Products in RxNorm and SNOMED CT - Consequences on interoperability
Connecting Ontologies for the Representation of Biological Pathways
A Case Study in Using ZFA and PATO for Describing Histological Phenotypes in the Larval Zebrafish
Ontology Based Annotation of Contextualized Vital Signs
Structured data acquisition with ontology-based web forms
Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies
Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem
Auditing Redundant Import in Reuse of a Top Level Ontology for the Drug Discovery Investigations Ontology
What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology
Mental Capabilities
Definition Coverage in the OBO Foundry Ontologies: The Big Picture
Ontological Representation and Analysis of the Molecular Interactions Related to COVID-19-associated Acute Kidney Injury
Higgs Bosons, Mars Missions, and Unicorn Delusions: How to Deal with Terms of Dubious Reference in Scientific Ontologies
Human Development Domain of the Ontology of Craniofacial Development and Malformation