yusuke1997/dblp-id-title huggingface dataset:
XGBoost-Based Instantaneous Drowsiness Detection Framework Using Multitaper Spectral Information of Electroencephalography
New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients
A powerful and robust co-expression network analysis algorithm
ArtSurf: a method for deformable partial matching of protein small-molecule binding sites
Methylome meets maternity ward: predicting pre-eclampsia in early pregnancy
Ontology-based deep learning for human behavior prediction in health social networks
Missense Mutation Effect Prediction using Categorical Boosting Optimized with Sparrow Search Algorithm
Determining population structure from k-mer frequencies
BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7 - 10, 2022
Trajectory-based and sound-based medical data clustering
Simultaneous determination of subunit and complex structures of symmetric homo-oligomers from ambiguous NMR data
An improved 1.375-approximation algorithm for the transposition distance problem
Comprehensive Updates in Network Synthesis Models to Create An Improved Benchmark for Network Alignment Algorithms
Exploring the Structure Space of Wildtype Ras Guided by Experimental Data
BCB '21: 12th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Gainesville, Florida, USA, August 1-4, 2021
Application of machine learning for patient response prediction to cardiac resynchronization therapy
Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data
Using compact encodings for path-based computations on pedigree graphs
Comparison of cohort-based identical-by-descent (IBD) segment finding methods for endogamous populations
RNA-DV: an interactive tool for editing and visualizing RNA secondary structures
Cell Neighbor Determination in the Metazoan Embryo System
Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data
Analogy-based entropic similarity between observations and/or predictions (AESOP): an entropically weighted information-theoretic measure for benchmarking computational accuracy
Attention-based aspect reasoning for knowledge base question answering on clinical notes
CytoEMD: detecting and visualizing between-sample variation in relation to phenotype with earth mover's distance
The interplay of sequence conservation and T cell immune recognition
Macromolecular modeling of protein structure - SCI1 of Nicotiana tabacum L
Feature selection for semi-supervised multi-label learning with application to gene function analysis
Classification and Prediction of Antimicrobial Peptides Using N-gram Representation and Machine Learning
Identification of covid-19 severity and associated genetic biomarkers based on scrna-SEQ data
Integration of genomic and epigenomic features to predict meiotic recombination hotspots in human and mouse
Low Rank Smoothed Sampling Methods for Identifying Impactful Pairwise Mutations
Leveraging Large Language Models for Predicting Microbial Virulence from Protein Structure and Sequence
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach
Dynamic Knowledge-Prior for Few-Shot Drug-Drug Interaction Events Prediction
Multidimensional Stochastic Process Model and its Applications to Analysis of Longitudinal Data with Genetic Information
Docking arachidonic acid to 8R-lipoxygenase using internal coordinate mechanics
Protein function prediction using weak-label learning
PubTrends: a scientific literature explorer
High-speed westfall-young permutation procedure for genome-wide association studies
GraphSpace: sharing and collaborating through networks on the web
Knowledge Extraction of Long-Term Complications from Clinical Narratives of Blood Cancer Patients with HCT Treatments
Sensitivity Analysis of Discrete Models and Application in Biological Networks
Differentiating party and date hubs in protein interaction networks using semantic similarity measures
Unsupervised identification of redundant domain entries in InterPro database using clustering techniques
Sequence model evaluation framework for STARR-seq peak calling
What Happens When?: Interpreting Schedule of Activity Tables in Clinical Trial Documents
FinFax: Fast Interpretation of Fax with NLP
HetNetAligner: A Novel Algorithm for Local Alignment of Heterogeneous Biological Networks
A Consensus Approach to Infer Tumor Evolutionary Histories
Machine learning techniques predict and characterize toxicity between different multi-walled carbon nanotubes
Robinson-Foulds Median Trees: A Clique-based Heuristic
Sparse Feature Selection for Classification and Prediction of Metastasis in Endometrial Cancer: Extended Abstract
Timestamp analysis of mental health tweets of Twitter users along with COVID-19 confirmed cases
Gene Set Databases: A Fountain of Knowledge or a Siren Call?
Representing Cellular Lines with SVM and Text Processing
A Framework for Identifying Affinity Classes of Inorganic Materials Binding Peptide Sequences
Quantifying Recombination Bias in Viral Evolution Using Persistent Homology
Discovering dysregulated phenotype-related gene patterns
Drug-gene Associations with Graph Learning
Computational Methods to Determine Genetic Factors in Nicotine Dependency
Validation and implementation of whole-exome sequencing bioinformatics processes for clinical applications
Characterization of S. cerevisiae Protein Complexes by Representative DDI Graph Planarity
Sample-based Models of Protein Structural Transitions
Visual Analytics to Optimize Patient-Population Evidence Delivery for Personalized Care
A multi-context feature learning approach to identify disease-specific gene neighborhoods
Beyond Motor Symptoms: Toward a Comprehensive Grading of Parkinson's Disease Severity
Combination therapy design for maximizing sensitivity and minimizing toxicity
Joint Grid Discretization for Biological Pattern Discovery
AlphaFold2 Model Refinement Using Structure Decoys
MarkovBin: An Algorithm to Cluster Metagenomic Reads Using a Mixture Modeling of Hierarchical Distributions
A general kernel boosting framework integrating pathways for predictive modeling based on genomic data
Intrinsically Bayesian Robust Classifier for Single-Cell Gene Expression Time Series in Gene Regulatory Networks
Predicting folding pathways between RNA conformational structures guided by RNA stacks
Building Applications for Interactive Data Exploration in Systems Biology
Fast-scBatch: Batch Effect Correction Using Neural Network-Driven Distance Matrix Adjustment
RNA-Seq Dose Response Experiments for Quantification of Off-Target Effects with RNAi Therapeutics
A Linear Delay Linear Space Algorithm for Enumeration of All Connected Induced Subgraphs
Sequence-based prediction of HIV-1 coreceptor usage: utility of n-grams for representing gp120 V3 loops
A Physiological Thermal Regulation Model with Application to the Diagnosis of Diabetic Peripheral Neuropathy
Connectome transformer with anatomically inspired attention for Parkinson's diagnosis
Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case Study
PReach: Reachability in Probabilistic Signaling Networks
Fast and Accurate Structure-Based Prediction of Resistance to the HIV-1 Integrase Inhibitor Raltegravir
Proteus: Towards a Manageability-focused Home-based Health Monitoring Infrastructure
Comparative Analysis of Prominent AI Models for Enhanced Diabetes Diagnosis & Prediction
Geometry Analysis for Protein Secondary Structures Matching Problem
An Ensemble Model for Mobile Device based Arrhythmia Detection
Constructing burrows-wheeler transforms of large string collections via merging
SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens
TimelyGPT: Extrapolatable Transformer Pre-training for Long-term Time-Series Forecasting in Healthcare
Processing Millions of Single Cells by SHARP
Deciphering Bladder Cancer-Related circRNA Biomarkers: An Ensemble Model Integrating Deep Learning and Statistics for circRNA Analysis
SL-GLAlign: Improving the Local Alignment of Biological Networks through Simulated Annealing
Health Care Needs of Underserved Populations in the City of Indianapolis
Improving the Prediction of Kinase Binding Affinity Using Homology Models
Human gene/protein synonym dictionary from WikiLinks
Network Analysis of Correlated Mutations in Influenza
A Cooperative Vehicle Routing Platform for Logistic Management in Healthcare
Melanoma Risk Prediction with Structured Electronic Health Records
Recursive Model for Dose-time Responses in Pharmacological Studies
MLPA: A Multi-scale Digital Twin Framework for Personalized Cancer Simulation and Treatment Optimization
FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data
Detecting Anomalies in Alert Firing within Clinical Decision Support Systems using Anomaly/Outlier Detection Techniques
Unified tests for fine scale mapping and identifying sparse high-dimensional sequence associations
Profiling Diverse Chemical Space to Map the Druggable Proteome
Decomposing Biochemical Networks Into Elementary Flux Modes Using Graph Traversal
Boolean network modeling for systematic identification of anticancer drug resistance in colorectal cancer
Graph-based approach for gene markers and applications in next-generation sequencing data analysis
Drug Response Prediction as a Link Prediction Problem
MVFormer: Predicting the pathogenicity of missense variants using gated transformers
Machine Learning Classification of Antimicrobial Peptides Using Reduced Alphabets
Effective neutralization and neutralization epitope masking signatures for four anti-V3 mAbs
A Supervised Machine Learning Approach for Distinguishing Between Additive and Replacing Horizontal Gene Transfers
Graph methods for protein-nucleotide interactions
Practical Feature Selection for Lung Cancer Gene Detection
Multiple reference networks improve accuracy of signaling network construction
Applying graph theoretic approaches to microbial metagenomes: ecological perspectives on function
ReFHap: a reliable and fast algorithm for single individual haplotyping
Explanation of Machine Learning Models Using Improved Shapley Additive Explanation
Augmenting Signaling Pathway Reconstructions
Analyzing Genomic Data Using Tensor-based Orthogonal Polynomials
Large Language Models for Cuffless Blood Pressure Measurement From Wearable Biosignals
Inferring Microbial Interactions from Metagenomic Time-series Using Prior Biological Knowledge
Modeling of multi domain contribution to protein interaction
Improved genetic algorithm for readmission risk index optimization
icuARM-II: improving the reliability of personalized risk prediction in pediatric intensive care units
Robust self-training strategy for various molecular biology prediction tasks
Using Sequence-Predicted Contacts to Guide Template-free Protein Structure Prediction
Spatiotemporal visualization of cell membrane dynamics and protein colocalization reveals correlation between membrane dynamics and metastatic invasion
A Machine Learning Model for Discovery of Protein Isoforms as Biomarkers
Gaussian Mixture Models with Constrained Flexibility for Fitting Tomographic Tilt Series
ACM-BCB 2018 ParBio Chairs' Welcome & Organization
You Wrote It, Now Get It Used: Publishing Your Software with Galaxy and Bioconda
Study on regulatory motifs in Arabidopsis thaliana
GPU-Accelerated Drug Discovery with Docking on the Summit Supercomputer: Porting, Optimization, and Application to COVID-19 Research
How do Twitter, Wikipedia, and Harrison's principles of medicine describe heart attacks?
Sequential parallel LASSO models for eQTL analysis
MoBaS on Phosphorylation Data
Concise Ranked Functional Enrichment Analysis
Geographic ensembles of observations using randomised ensembles of autoregression chains: ensemble methods for spatio-temporal time series forecasting of influenza-like illness
Shortest path edit distance for detecting duplicate biological entities
iAtheroSim: atherosclerosis process simulator on smart devices
An R-based tool for miRNA data analysis and correlation with clinical ontologies
Rapid efficient macromolecular substructure searching in a cloud
Alignment of real-time live-cell growth data for quantitative analysis of growth at the shoot apex of Arabidopsis thaliana : deducing the relationship between primordia growth, gene expression and cell behaviors
A High Performance Parametric Model for 3D Gingiva-Tooth Boundary via Generalized Cylinders
HPVdb: a Data Mining System for Knowledge Discovery in Human Papillomavirus with Applications in T cell Immunology and Vaccinology
Couplet supertree by equivalence partitioning of taxa set and DAG formation
Beta-sheet Detection and Representation from Medium Resolution Cryo-EM Density Maps
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Discrimination of recurrent CNVs from individual ones from multisample aCGH by jointly constrained minimization
Supervised Machine Learning Approaches Predict and Characterize Nanomaterial Exposures: MWCNT Markers in Lung Lavage Fluid
Applying Stochastic Process Model to Imputation of Censored Longitudinal Data
An integrated pharmacogenomic analysis of doxorubicin response using genotype information on DMET genes
MPDF-UNET: Modality Priors and Dynamic Features Fusion U-Net for Incomplete Multimodal Brain Tumor Segmentation
A Co-contrastive Learning Method to Fuse Multi-modal Phenotypes and Identify Genetic Risk Variations
A Confidence Measure for Model Fitting with X-Ray Crystallography Data
A robotics approach to analysis of non-isotropic random walks
Pangenome-Wide Association Studies with Frequented Regions
Data everywhere: an integrated longitudinal data visualization platform for health and demographic surveillance sites
A Distributed Alignment-free Pipeline for Human SNPs Genotyping
Analysis of 16S Genomic Data using Graphical Databases
A generalized sparse regression model with adjustment of pedigree structure for variant detection from next generation sequencing data
A multi-directional rapidly exploring random graph (mRRG) for protein folding
A Fast Sketch-based Assembler for Genomes
Leveraging the Cloud for Intelligent Clinical Data Registries
Immunoinformatic approach to a multi-pathogen genome-derived epitope-driven vaccine
PlasMatch: a tool for choosing usable restriction enzymes and plasmid backbones
A Histogram-based Outlier Profile for Atomic Structures Derived from Cryo-Electron Microscopy
Deep Learning for Autism Spectrum Disorder Identification Based on Children's Facial Images: A Multi-Feature Fusion Perspective
Optimization of I/O Intensive Genome Assemblies on the Cori Supercomputer with Burst Buffer
Application of the spreading activation technique for recommending concepts of well-known ontologies in medical systems
A Comparison of Representation Learning Methods for Medical Concepts in EHR Databases
Semi-supervised classification of disease prognosis using CR images with clinical data structured graph
Computational modeling of SARS-CoV-2 Nsp1 binding to human ribosomal 40S complex
Persistent phylogeny: a galled-tree and integer linear programming approach
A Stochastic Model of Size Control in the Budding Yeast Cell Cycle
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction
Mining massive SNP data for identifying associated SNPs and uncovering gene relationships
A spatiotemporal model of polarity and spatial gradient establishment in caulobacter crescentus
Rapid, separable compression enables fast analyses of sequence alignments
Phenotyping Immune Cells in Tumor and Healthy Tissue Using Flow Cytometry Data
Deep Residual Nets for Improved Alzheimer's Diagnosis
Automated Off-label Drug Use Detection from User Generated Content
NGSPipes: Fostering Reproducibility and Scalability in Biosciences
Self-Supervised Learning with Touchscreen Typing. A Generalizable Strategy for Parkinson's Disease Detection Across Datasets
ppIacerDC: a new scalable phylogenetic placement method
An ensemble SVM model for the accurate prediction of non-canonical MicroRNA targets
Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets
Multimodal Learning for Cardiovascular Risk Prediction using EHR Data
Utilizing twilight zone sequence similarities to increase the accuracy of protein 3D structure comparison
Peptide Sequencing Via Protein Language Models
Learning causal structures with background knowledge in health data
Performance Evaluation of Semantic Segmentation Models with and without Attention for White Blood Cells Segmentation
Big data and predictive modeling topics in healthcare
Computer Assisted Surgery-Planning for Microwave Ablation
Studies of biological networks with statistical model checking: application to immune system cells
DVL-CC: A Novel Dual-View Learning Framework for Compound Cocrystal Prediction Boosted by View Consistency and Complementarity
Predicting Drug-drug Interactions Using Heterogeneous Graph Attention Networks
NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers
Extraction of Tumor Site from Cancer Pathology Reports using Deep Filters
Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer Patients
Computational support system for personalized medicine
Neural system modeling and simulation using hybrid functional Petri net
Efficient Federated Learning with Multi-Teacher Knowledge Distillation for COVID-19 Detection
Computational analysis of the stability of SCF ligases employing domain information
An Advanced Workflow for Metabolite Annotation
Adaptive Local Realignment via Parameter Advising
CNN Based Segmentation of Infarcted Regions in Acute Cerebral Stroke Patients From Computed Tomography Perfusion Imaging
ELMV: an Ensemble-Learning Approach for Analyzing Electrical Health Records with Significant Missing Values
Tetrahedral image-to-mesh conversion for biomedical applications
Use of Structural Properties of Underlying Graphs in Pathway Enrichment Analysis of Genomic Data
A Volumetric Survey of Cavities and Electrostatic Patterns in Protein-RNA Binding Sites
Using a Semi-Automated Modeling Environment to Construct a Bayesian, Sepsis Diagnostic System
Alignment seeding strategies using contiguous pyrimidine purine matches
Characterizing the Role of Environment on Phenotypic Traits using Topological Data Analysis
Comparison of virus interactions with human signal transduction pathways
Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling
A flexible volumetric comparison of protein cavities can reveal patterns in ligand binding specificity
Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks
Conditional random fields for morphological analysis of wireless ECG signals
TFmeta: A Machine Learning Approach to Uncover Transcription Factors Governing Metabolic Reprogramming
Stable Feature Selection with Minimal Independent Dominating Sets
Understanding Sequence Conservation With Deep Learning
Memory-based local search for simplified protein structure prediction
Feature selection method using WF-LASSO for gene expression data analysis
Heuristic Algorithms for Feature Selection under Bayesian Models with Block-diagonal Covariance Structure
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions
Search feasibility in distributed MS-proteomics big data
RAmbler: de novo genome assembly of complex repetitive regions
Analysis of Neurooncological Data to Predict Success of Operation Through Classification
HmmUFOtu: An HMM and Phylogenetic Placement based Ultra-fast Taxonomic Assignment and OTU Picking Tool for Microbiome Amplicon Sequencing Studies
Quality of Care and Electronic Health Record Systems
Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILP
A Novel Approach for Increasing Taxonomic Resolution in Protein-Based Alignments
ADANET: inferring gene regulatory networks using ensemble classifiers
Bacterial pan-genomes: data representation and analysis
Network Analysis and Recommendation for Infectious Disease Clinical Trial Research
Operonome: the concept and application in bacterial systems biology
PathCase-MAW: An Online Metabolic Network Analysis Workbench
Extracapsular extension identification for head and neck cancer using multi-scale 3D deep neural network
Reachability analysis in large probabilistic biological networks
Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny
A novel classification method for predicting acute hypotensive episodes in critical care
Mining k-median chromosome association graphs from a population of heterogeneous cells
Knowledge-based search and multi-objective filters: proposed structural models of GPCR dimerization
Contextual embedding and model weighting by fusing domain knowledge on biomedical question answering
DTC genetic testing and consumer comprehension
Systematically Prioritizing Targets in Genome-Based Drug Repurposing
Bone disease prediction and phenotype discovery using feature representation over electronic health records
MAPS: Analyzing Peptide Binding Subsites in Major Histocompatibility Complexes
MoTeX: A word-based HPC tool for MoTif eXtraction
A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository
DeepVS: a deep learning approach for RF-based vital signs sensing
Integrated querying of disparate association and interaction data in biomedical applications
A new algorithm for finding enriched regions in ChIP-Seq data
Automatic Detection of Beta-barrel from Medium Resolution Cryo-EM Density Maps
Expert and Student User Evaluation of Semantic Protocol Search
SideEffectPTM: an unsupervised topic model to mine adverse drug reactions from health forums
Learning Reduced Latent Representations of Protein Structure Data
Integrative Sufficient Dimension Reduction Methods for Multi-Omics Data Analysis
Enhancing Privacy Protection for Human Genome Synthesis Using Gradient Clipping
Extracting Structure from Contaminated Symbolic Data
POMP: a powerful splice mapper for RNA-seq reads
iSOM-GSN: An Integrative Approach for Transforming Multi-omic Data into Gene Similarity Networks via Self-organizing Maps
Automated Next Generation Sequencing Bioinformatics Pipelines for Pathogen Discovery and Surveillance
Investigating Multiview and Multitask Learning Frameworks for Predicting Drug-Disease Associations
Improvement of Protein-Protein Interaction Prediction by Integrating Template-Based and Template-Free Protein Docking
Transfer learning for predicting virus-host protein interactions for novel virus sequences
AlignMR: mass spectrometry peak alignment using Hadoop MapReduce
ERNE-BS5: aligning BS-treated sequences by multiple hits on a 5-letters alphabet
Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors
Bayesian Graphical Models for Computational Network Biology
Physics-Guided Deep Generative Model For New Ligand Discovery
Deep Learning Based Medical Diagnosis System Using Multiple Data Sources
ProSetComp: A Platform for Protein Set Comparisons
On the Maximal Independent Sets of k -mers with the Edit Distance
Dynamic networks reveal key players in aging
SPEAR: self-supervised post-training enhancer for molecule optimization
Identification of gene clusters with phenotype-dependent expression with application to normal and premature ageing
Fast, Clash-Free RNA Conformational Morphing using Molecular Junctions
Efficient learning of association rules from human phenotype ontology
Towards Local Alignment of Multiple Networks: Multi-GLAlign
Determination of Immunophenotypic Changes by CyTOF, Epigenetics and Component Resolved Diagnostics During Successful Desensitization in Multi-food Oral Immunotherapy
HMSC: a Hybrid Metagenomic Sequence Classification Algorithm
Relationship preserving feature selection for unlabelled clinical trials time-series