yusuke1997/dblp-id-title huggingface dataset:
Monitoring Potential Drug Interactions and Reactions via Network Analysis of Instagram User Timelines
Integrating Natural Language Processing with Flybase Curation
A Probabilistic Model for Small RNA Flowgram Matching
Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks
An Updated Debarcoding Tool for Mass Cytometry with Cell Type-Specific and Cell Sample-Specific Stringency Adjustment
A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker
Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction
Measures of Exposure Impact Genetic Association Studies: An Example in Vitamin K Levels and VKORC1
Cell Index Database (CELLX): A Web Tool for Cancer Precision Medicine
T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes
Variant Priorization and Analysis Incorporating Problematic Regions of the Genome
Utilization of an EMR-Biorepository to Identify the Genetic Predictors of Calcineurin-Inhibitor Toxicity in Heart Transplant Recipients
Leveraging summary statistics to make inferences about complex phenotypes in large biobanks
Automatically Generating Gene Summaries from Biomedical Literature
iPINBPA: An Integrative Network-Based Functional Module Discovery Tool for Genome-Wide Association Studies
A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets
Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition
Comparisons of Protein Family Dynamics
Human Evolutionary Genomics and the Search for the Genes that Made Us Human
Mining Patents Using Molecular Similarity Search
Reading between the genes: interpreting non-coding DNA in high-throughput
Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins
Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data
Gene Expression and Genetic Networks - Session Introduction
Machine Learning from Concept to Clinic: Reliable Detection of BRAF V600E DNA Mutations in Thyroid Nodules Using High-Dimensional RNA Expression Data
Ligand-Receptor 3-D Similarity Studies Using Multiple 4-Point Pharmacophores
Session Introduction: Biomedical Ontologies
GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data
Assessment of Coverage for Endogenous Metabolites and Exogenous Chemical Compounds Using anUntargeted Metabolomics Platform
Intrinsic Protein Disorder and Protein-Protein Interactions
Sub-Micrometer Anatomical Models of the Sarcolemma of Cardiac Myocytes Based on Confocal Imaging
Retrovirus HTLV-1 Gene Circuit: A Potential Oscillator for Eukaryotes
MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short Sequences
ProtAlign: A 3-Dimensional Protein Alignment Assessment Tool
Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs
ChainTweak: Sampling from the Neighbourhood of a Protein Conformation
Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity Method
A repository of microbial marker genes related to human health and diseases for host phenotype prediction using microbiome data
Simulation of Genetic Interaction for Drosophila Leg Formation
Incorporation of DNA methylation into eQTL mapping in African Americans
An Evaluation of Power to Detect Low-Frequency Variant Associations Using Allele-Matching Tests that Account for Uncertainty
Finding Most Likely Haplotypes in General Pedigrees Through Parallel Search with Dynamic Load Balancing
An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem
Experience in Reasoning with the Foundational Model of Anatomy in OWL DL
A Kinase Inhibition Map Approach for Tumor Sensitivity Prediction and Combination Therapy Design for Targeted Drugs
MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays
An Analysis of Information Content Present in Protein-DNA Interactions
Prediction of Glycosylation Across the Human Proteome and the Correlation to Protein Function
TrueImage: A Machine Learning Algorithm to Improve the Quality of Telehealth Photos
Scalable Visualization for High-dimensional Single-cell Data
Genomic Standards Consortium Workshop: Metagenomics, Metadata and Metaanalysis (M3)
A Literature-Based Knowledge Graph Embedding Method for Identifying Drug RepurposingOpportunities in Rare Diseases
Finding Unique Filter Sets in PLATO: A Precursor to Efficient Interaction Analysis in GWAS Data
Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies
Matrix Factorization-Based Data Fusion for Gene Function Prediction in Baker's Yeast and Slime Mold
Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling
De novo Ensemble Modeling Suggests that AP2-Binding to Disordered Regions Can Increase StericVolume of Epsin but Not Eps15
A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity
Semi-Automated XML Markup of Biosystematic Legacy Literature with the Goldengate Editor
Structural insights into Pre-Translocation Ribosome Motions
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations
Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure
Outgroup Machine Learning Approach Identifies Single Nucleotide Variants in Noncoding DNA Associated with Autism Spectrum Disorder
Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit
Sequence Analysis With the Kestrel SIMD Parallel Processor
Spectral Clustering Strategies for Heterogeneous Disease Data
Assisted Curation: Does Text Mining Really Help?
A Bayesian Framework for SNP Identification
Understanding the Global Properties of Functionally-Related Gene Networks Using the Gene Ontology
Towards Pathway Curation Through Literature Mining - A Case Study Using PharmGKB
Monitoring ICU Mortality Risk with a Long Short-Term Memory Recurrent Neural Network
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders
Influence of Network Topology and Data Collection on Network Inference
How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic Data
Modeling Ventricular Interaction: A Multiscale Approach from Sarcomere Mechanics to Cardiovascular Systems Hemodynamics
Repurposing Germline Exomes of the Cancer Genome Atlas Demands a Cautious Approach and Sample-Specific Variant Filtering
Normalization Regarding Non-Random Missing Values in High-Throughput Mass Spectrometry Data
A Framework for Attribute-Based Community Detection with Applications to Integrated Functional Genomics
Identification of Functional Modules in Protein Complexes via Hyperclique Pattern Discovery
An Integrated Approach To Blood-Based Cancer Diagnosis And Biomarker Discovery
Building Mouse Phenotype Ontologies
When should we NOT transfer functional annotation between sequence paralogs?
Generif Quality Assurance as Summary Revision
Unison: An Integrated Platform for Computational Biology Discovery
Symbolic Inference of Xenobiotic Metabolism
Using Information Theory to Discover Side Chain Rotamer Classes: Analysis of the Effects of Local Backbone Structure
Integrating community-level data resources for precision medicine research
Gaussian Mixture Modeling of Helix Subclasses: Structure and Sequence Variations
Enabling Personal Genomics with an Explicit Test of Epistasis
aTEMPO: Pathway-Specific Temporal Anomalies for Precision Therapeutics
Evaluation of PrediXcan for prioritizing GWAS associations and predicting gene expression
Constraint-Based Hydrophobic Core Construction for Protein Structure Prediction in the Face-Centered-Cubic Lattice
GO Molecular Function Terms Are Predictive of Subcellular Localization
Scaling of Accuracy in Extremely Large Phylogenetic Trees
Using BioBin to Explore Rare Variant Population Stratification
Analysis of Large-Scale Sequencing of Small RNAs
A Biological Named Entity Recognizer
Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values
Protein Structure and Fold Prediction Using Tree-Augmented Bayesian Classifier
Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks
Investigating Implicit Knowledge in Ontologies with Application to the Anatomical Domain
Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models
Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic Approach
MRI to MGMT: Predicting methylation status in glioblastoma patients using convolutional recurrent neural networks
Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology
Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA, January 3-7, 2020
A Comparative Analysis of Computational Motif-Detection Methods
A New Implmentation and Detailed Study of Breakpoint Analysis
Learning a Latent Space of Highly Multidimensional Cancer Data
Efficient Two-Stage Genome-Wide Association Designs Based on False Positive Report Probabilities
Efficiencies of Genes and Accuracy of Tree-Building Methods in Recovering a Known Drosophila Genealogy
Temporal Order of Disease Pairs Affects Subsequent Disease Trajectories: The Case of Diabetes and Sleep Apnea
Knowledge-Assisted Approach to Identify Pathways with Differential Dependencies
Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis
Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets
Improving the Efficiency of Biomarker Identification Using Biological Knowledge
New Conformational Search Method Using Genetic Algorithm and Knot Theory for Proteins
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition
A Bayesian Nonparametric Model for Reconstructing Tumor Subclones Based on Mutation Pairs
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016
Bayesian Biclustering for Patient Stratification
A Novel Multi-Modal Drug Repurposing Approach for Identification of Potent ACK1 Inhibitors
The Compositional Structure of Gene Ontology Terms
Discovery of Mutated Subnetworks Associated with Clinical Data in Cancer
A Novel Profile Biomarker Diagnosis for Mass Spectral Proteomics
MDL and the Statistical Mechanics of Protein Potentials
Local ancestry transitions modify snp-trait associations
Towards a Broad-Coverage Biomedical Ontology Based on Description Logics
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer
Evidence for Sequence-Independent Evolutionary Traces in Genomics Data
Risk Factor Interactions and Genetic Effects Associated with Post-Operative Atrial Fibrillation
Towards Integrative Gene Prioritization in Alzheimer's Disease
Bioethics, Fiction Science, and the Future of Mankind - Session Introduction
Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders
Transferability of Tag SNPs to Capture Common Genetic Variation in DNA Repair Genes Across Multiple Populations
Reverse Engineering of Metabolic Pathways from Observed Data Using Genetic Programming
A Methodology to Migrate the Gene Ontology to a Description Logic Environment Using DAML+OIL
Multi-Scale Modeling of the Human Vertebral Body: Comparison of Micro-CT Based High-Resolution and Continuum-Level Models
The Virtual Cell
Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies
Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018
RDF Sketch Maps - Knowledge Complexity Reduction for Precision Medicine Analytics
Representation and Simulation of Biochemical Processes Using the pi-Calculus Process Algebra
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model
Achieving Trustworthy Biomedical Data Solutions
Vector Quantization Kernels for the Classification of Protein Sequences and Structures
Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive
Predicting Individual Well-Being Through the Language of Social Media
Local Optimization for Global Alignment of Protein Interaction Networks
Modulating Protein-DNA Interactions by Post-Translational Modifications at Disordered Regions
Finite Element Analysis of Drug Electrostatic Diffusion: Inhibition Rate Studies in N1 Neuraminidase
Reputation-Based Collaborative Network Biology
Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex
Enhancing Data Sharing in Collaborative Research Projects with DASH
Influence of tissue context on gene prioritization for predicted transcriptome-wide association studies
phyloseq: A Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence Data
Modeling Gene Expression with Differential Equations
Optimization of Genomic Classifiers for Clinical Deployment: Evaluation of Bayesian Optimization to Select Predictive Models of Acute Infection and In-Hospital Mortality
Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing
Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population
The Accuracy of Fast Phylogenetic Methods for Large Datasets
Stepwise Group Sparse Regression (SGSR): Gene-Set-Based Pharmacogenomic Predictive Models with Stepwise Selection of Functional Priors
Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development
Predicting the Sub-Cellular Location of Proteins from Text Using Support Vector Machines
Informatics Approaches in Structural Genomics - Session Introduction
Detection of Bacterial Small Transcripts from RNA-Seq Data: A Comparative Assessment
Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals
Shallow Genomics, Phylogenetics, and Evolution in the Family Drosophilidae
Robustly Extracting Medical Knowledge from EHRs: A Case Study of Learning a Health KnowledgeGraph
Exploring Brain Transcriptomic Patterns: A Topological Analysis Using Spatial Expression Networks
Joint Bayesian Estimation of Mutation Location and Age Using Linkage Disequilibrium
Study of Effect of Drug Lexicons on Medication Extraction from Electronic Medical Records
An Evidence Ontology for Use in Pathway/Genome Databases
Feature Selection and Dimension Reduction of Social Autism Data
Class Prediction from Time Series Gene Expression Profiles Using Dynamical Systems Kernels
ProSNet: integrating homology with molecular networks for protein function prediction
Incorporating Biological Knowledge into Evaluation of Causal Regulatory Hypotheses
Linking Biomedical Language, Information and Knowledge - Session Introduction
Improving precision in concept normalization
KLEAT: Cleavage Site Analysis of Transcriptomes
Impact of Mutational Signatures on microRNA and Their Response Elements
Missing Data Imputation in the Electronic Health Record Using Deeply Learned Autoencoders
Cross-Graining: Efficient Multi-Scale Simulation via Markov State Models
Efficient and Robust Prediction Algorithms for Protein Complexes Using Gomory-Hu Trees
Nutrition-Related Analysis of Pathway/Genome Databases
A New Relevance Estimator for the Compilation and Visualization of Disease Patterns and Potential Drug Targets
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011
An Application and Empirical Comparison of Statistical Analysis Methods for Associating Rare Variants to a Complex Phenotype
A Comparison of Genetic Network Models
Evaluation of the Vector Space Representation in Text-Based Gene Clustering
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005
A Comparison of Different Strategies for Computing Confidence Intervals of the Linkage Disequilibrium Measure
Drug Target Predictions Based on Heterogeneous Graph Inference
Identify Cancer Driver Genes Through Shared Mendelian Disease Pathogenic Variants and Cancer Somatic Mutations
Applications of Bioinformatics to Non-Coding RNAs in the Era of Next-Generation Sequencing
A Motif-Based Method for Predicting Interfacial Residues in Both the RNA and Protein Components of Protein-RNA Complexes
Exploring Biological Network Dynamics with Ensembles of Graph Partitions
Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species
Computational Approaches to Study Microbes and Microbiomes
A Bayesian Framework for Data and Hypotheses Driven Fusion of High Throughput Data: Application to Mouse Organogenesis
Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants
Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies
Annotating gene sets by mining large literature collections with protein networks
Predicting RNA Structure by Multiple Template Homology Modeling
Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing
BayClone: Bayesian Nonparametric Inference of Tumor Subclones Using NGS Data
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques
Bags of Words Models of Epitope Sets: HIV Viral Load Regression with Counting Grids
Semi-automated NMR Pipeline for Environmental Exposures: New Insights on the Metabolomics of Smokers versus Non-smokers
On the power and limits of sequence similarity based clustering of proteins into families
Two-Dimensional Reaction of Biological Molecules Studied by Weighted-Ensemble Brownian Dynamics
Identifying Protein Complexes in High-Throughput Protein Interaction Screens Using an Infinite Latent Feature Model
Combining Heterogenous Data for Prediction of Disease Related and Pharmacogenes
Multiplexing Schemes for Generic SNP Genotyping Assays
Determining Significant Fold Differences in Gene Expression Analysis
Identifying Cancer Specific Metabolic Signatures Using Constraint-Based Models
Predicting Significance of Unknown Variants in Glial Tumors Through Sub-Class Enrichment
Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology
SAMIE: Statistical Algorithm for Modeling Interaction Energies
VisAGE: Integrating external knowledge into electronic medical record visualization
An Iterative Algorithm for Metabolic Network-Based Drug Target Identification
Support Vector Machine Prediction of Signal Peptide Cleavage Site Using a New Class of Kernels for Strings
Mapping patient trajectories using longitudinal extraction and deep learning in the MIMIC-III Critical Care Database
Emulsion Based Selection of T7 Promoters of Varying Activity
The Structure and Function of Chromatin and Chromosomes
Improved Gene Selection for Classification of Microarrays
Structural Models for Host-Pathogen Protein-Protein Interactions: Assessing Coverage and Bias
Master Regulators Used As Breast Cancer Metastasis Classifier
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019
MetaSeq: Privacy Preserving Meta-Analysis of Sequencing-Based Association Studies
Linking Ontological Resources Using Aggregatable Substance Identifiers to Organize Extracted Relations
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014
Estimating the Number of Species with Catchall
The Steady States and Dynamics of Urokinase-mediated Plasmin Activation
Mining Functionally Relevant Gene Sets for Analyzing Physiologically Novel Clinical Expression Data
A Probabilistic Approach to a Consensus Multiple Alignment
Mining Terminological Knowledge in Large Biomedical Corpora
Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction
Role of Synthetic Genetic Interactions in Understanding Functional Interactions Among Pathways
Causal Inference in Biology Networks with Integrated Belief Propagation
Efficient Construction of Disordered Protein Ensembles in a Bayesian Framework with Optimal Selection of Conformations
Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization
A heuristic method for simulating open-data of arbitrary complexity that can be used to compare and evaluate machine learning methods
Modulation of p53 Transactivation Domain Conformations by Ligand Binding and Cancer-AssociatedMutations
Analyzing Sensory Systems with the Information Distortion Function
Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes
Vertebrate Phylogenomics: Reconciled Trees and Gene Duplications
An NMR-Based Quenched Hydrogen Exchange Investigation of Model Amyloid Fibrils Formed by Cold Shock Protein A
Harnessing Big Data for Precision Medicine: Infrastructures and Applications
Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor
Coarse and Reliable Geometric Alignment for Protein Docking
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome
Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network
Improved Performance of Gene Set Analysis on Genome-Wide Transcriptomics Data when Using Gene Activity State Estimates
Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data
Using DNA Duplex Stability Information for Transcription Factor Binding Site Discovery
Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters
SNPs2ChIP: Latent Factors of ChIP-seq to infer functions of non-coding SNPs
On the Power to Detect SNP/Phenotype Association in Candidate Quantitative Trait Loci Genomic Regions: A Simulation Study
Semantic Changepoint Detection for Finding Potentially Novel Research Publications
Computer Modeling in Physiology: From Cell to Tissue - Session Introduction
Structure-Based Comparison of Four Eukaryotic Genomes
Variable Selection Method for the Identification of Epistatic Models
Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007
Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles
Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Hawaii, USA, January 3-7, 2001
Inviting the Public: The Impact on Informatics Arising from Emerging Global Health Research Paradigms
SEPP: SATe -Enabled Phylogenetic Placement
Discovery Informatics in Biological and Biomedical Sciences: Research Challenges and Opportunities
Reproducible and Shareable Quantifications of Pathogenicity
LSHPlace: Fast Phylogenetic Placement Using Locality-Sensitive Hashing
Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization
Annotating Genes Using Textual Patterns
Singular Value Decomposition Regression Models for Classification of Tumors from Microarray Experiments
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis