yusuke1997/dblp-id-title huggingface dataset:
Spatio-temporal estimation of mobile-phone call demand in the Kumamoto earthquakes
Spatial Data Warehouse Multidimensional Design Approach and Geo-Decisional Tool for Road Accidents Analysis
Improved Binarized Statistical Image Features for MRI Brain Tumor Identification and Classification
Traveller Alert System
Big Data assisted Strategy for Resuming of Work and Production during COVID-19
Post-disaster relief by vehicle route planning and service time estimation in case of Chennai floods
A group-based scheduling method for landslide detection system with dense wireless sensor network
B-DTN7: Browser-based Disruption-tolerant Networking via Bundle Protocol 7
Statistical analysis of fractionation resistance by functional category and expression level
Comparing analysis engines for generated micro-patterned, actin images
Invited: A protein domain-centric approach to translational bioinformatics
A robust, library-based, optimization-driven method for automatic gene circuit design
Automatic B cell lymphoma detection using flow cytometry data
Invited: Algorithmic challenges in DNA sequencing and disease association
Functional Connectivity Disruptions in Alzheimer's Disease: A Maximum Flow Perspective
Parametric modeling of cellular state transitions as measured with flow cytometry
Single-Cell Gene Regulatory Network Analysis Reveals Potential Mechanisms of Action of Antimalarials Against SARS-CoV-2
Computational Study of Hodgkin-Huxley Type Calcium-Dependent Potassium Current in Urinary Bladder Over Activity
Fast and Succinct Compression of k-mer Sets with Plain Text Representation of Colored de Bruijn Graphs
How genome complexity can explain the hardness of aligning reads to genomes
Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets
So you think you can PLS-DA?
"Use of computational biology in assessing treatment response and disease progression"
Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing
Multi-scale modeling of microvascular reactivity
Parallel analysis of large graph-structured data in genomics and proteomics
Efficient filtering algorithm for detection of genetic similarity between large genomic datasets
Extended correction model for retinal optical imaging
Deep Learning of CTCF-Mediated Chromatin Loops in 3D Genome Organization
Prediction of missing common genes for disease pairs using network based module separation
Improved Graph-Based Antibody-Aware Epitope Prediction with Protein Language Model-Based Embeddings
A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information
Computational prediction of ATC codes of drug-like compounds using tiered learning
Reference-free inference of tumor phylogenies from single-cell sequencing data
Ensemble learning algorithm for drug-target interaction prediction
Improving Inter-helical Residue Contact Prediction in α-Helical Transmembrane Proteins Using Structural Neighborhood Crowdedness Information
A randomized algorithm for aligning DNA sequences to reference genomes
Energy-based classification and structure prediction of transmembrane beta-barrel proteins
Poster evaluation of the level set method by using similarity criterion (KCC) for clustering and analysis of functional MRI data
Estimation of the true evolutionary distance under the fragile breakage model
Computational analysis and modelling of intra-host adaptation of hepatitis C virus: The role of immune cross-reactivity of HCV quasispecies
Poster: Distinguishing scientific abbreviations and genes in bio-medical literature mining
Global maximum-parsimony based ancestral reconstruction with non-universal genes
An integrated model of human Biomedical and Clinical Data structures
Workshop: Efficient sequential and parallel algorithms for sequence assembly
Comparative genetic pathway analysis using structural equation Modeling
Poster: Sequence classification of homopolymer emissions (SCOPE)
Keynote: DNA-based molecular devices
FastFeatGen: Faster Parallel Feature Extraction from Genome Sequences and Efficient Prediction of DNA N 6 -Methyladenine Sites
Performance evaluation of different encoding strategies for quantitative genetic trait prediction
Oak Ridge Biosurveillance Toolkit: Scalable machine learning for public health surveillance
A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms
Workshop: Transcriptome assembly from RNA-Seq data: Objectives, algorithms and challenges
A weighted classification model for peptide identification
BAMSE: Bayesian model selection for tumor phylogeny inference among multiple tumor samples
Improved Decoy Selection via Machine Learning and Ranking
Mining transcript features related to translation in Arabidopsis using LASSO and random forest
Robust haplotype reconstruction of eukaryotic read data with Hapler
Poster: In silico hypotheses of the Ass42 peptide aggregation process in Alzheimer's disease
Weighted gene coexpression network analysis of prostate cancer
Efficient algorithms for error correction and compression of NGS data
Convolutional Neural Network for Automated Mass Segmentation in Mammography
Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers
Poster: MRMPath: A web-based tool that identifies peptide transitions for LCMRM- MS analysis and its application to biological pathways
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire
ATria: A novel centrality algorithm applied to biological networks
Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies
Modular approach to modeling homotypic and heterotypic gap junctions
Cache and energy efficient alignment of very long sequences
RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences
SC1: A web-based single cell RNA-seq analysis pipeline
Poster: Classifying primary outcomes in rheumatoid arthritis: Knowledge discovery from clinical trial metadata
Poster: Randomized algorithms for planted Motif Search
GaussianCpG: A Gaussian model for detection of human CpG island
"Imaging and image guidance in lung cancer therapeutics"
GAPPadder: A sensitive approach for closing gaps on draft genomes with short sequence reads
Clustering Based Identification of SARS-CoV-2 Subtypes
Workshop: Error correction, noise filtering, and phylogenetic analysis of HIV sequences using the 454 platform
Local and Global Stratification Analysis in Whole Genome Sequencing (WGS) Studies Using LocStra
An accurate and customizable text classification algorithm: Two applications in healthcare
Workshop: Comparative assembly of metagenomic sequences
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning
Identifying the Signatures of Missing Transcripts
EpiSpec: A formal specification language for parameterized agent-based models against epidemiological ground truth
Effects of rooting via outgroups on ingroup topology in phylogeny
RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data
Signal extraction from movies of honeybee brain activity by convex analysis
Poster: Linear B-cell epitope prediction based on Support Vector Machine and propensity scales
PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic Networks
Invited: From protein networks to disease mechanisms
HRVCam: A software for real-time feedback of heart rate and HRV
Efficient pebble game algorithms engineered for protein rigidity applications
Invited: Using novel small RNAs to understand genome structure and function
Parameter Estimation of Stochastic Biochemical Models using Multiple Hypothesis Testing
SMART2: Multi-library Statistical Mitogenome Assembly with Repeats
SILP3: Maximum likelihood approach to scaffolding
Role of ADAR in determining the substitution pattern in sigma virus (Rhabdoviridae) in Drosophila melanogaster
Explaining Protein Folding Networks Using Integrated Gradients and Attention Mechanisms
Curvelet-based texture classification of critical Gleason patterns of prostate histological images
Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants
Automatic analysis of neonatal video data to evaluate resuscitation performance
Identifying interacting SNPs with parallel fish-agent based logic regression
Excerno: Filtering Mutations Caused by the Clinical Archival Process in Sequencing Data
New computational methods for assessing the genetic relatedness of close viral variants
Poster: Biochemical signaling: A discrete simulation with memory enhancement
SAIS-OPT: On the characterization and optimization of the SA-IS algorithm for suffix array construction
Poster: Public health applications of metagenomic data using publicly available computing framework
Algorithms for prediction of viral transmission using analysis of intra-host viral populations
A Novel Pathway Network Analytics Method Based on Graph Theory
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
Workshop: Characterization of structural variants with next generation DNA sequencing
Poster: Development of dynamic leg joint model for paraplegic with Functional Electrical Stimulation
Workshop: Gene fusion detection with short and medium length next generation sequencing
A pharmacophore hypothesis and computationally optimized lead compounds for VKORC1
Invited: Challenges in metagenomic assembly
Invited: Computational behavioral ecology
Construction, enumeration, and optimization of perfect phylogenies on multi-state data
Workshop: Can you assemble whole genomes from next generation sequencing data?
MELEPS: Multiple Expert Linear Epitope Prediction System
CloG: A pipeline for closing gaps in a draft assembly using short reads
Single Model Quality Estimation of Protein Structures via Non-negative Tensor Factorization
Filtering of MS/MS data for peptide identification
Space-efficient read indexing and retrieval based on compressed de Bruijn graphs
EfficientNet in Digital Twin-Based Cardiac Arrest Prediction and Analysis
Computationally Reconstructing the Evolution of Cancer Progression Risk
BigLS - The 1 st International Workshop on Big Data in Life Sciences
Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites
Identifying representative drug resistant mutants of HIV reverse transcriptase
Mammo-Bench: A Large-Scale Benchmark Dataset of Mammography Images
Practical software for big genomics data
Metagenomic read clustering based on overlap graphs
A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma
A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data
Draft genome sequence of a natural isolated Saccharomyces cerevisiae from Colombia
Invited: Comparative microbial genomics
The ruzzo-tompa algorithm can find the maximal paths in weighted, directed graphs on a one-dimensional lattice
IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013, New Orleans, LA, USA, June 12-14, 2013
Efficient Sequential and Parallel Algorithms for Incremental Record Linkage
Towards whole transcriptome deconvolution using single-cell data
A constrained linear approach to identify a multi-timescale adaptive threshold neuronal model
ModEDI: An extendable software architecture for examining the effects of developmental interactions on evolutionary trajectories
PMS6MC: A multicore algorithm for motif discovery
Invited: Reverse engineering whole-genome networks
Workshop: Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
High-performance biocomputing for simulating the spread of contagion over large contact networks
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming
Symmetry-based presentation for stem-cell image segmentation
Estimation of viral population structure from amplicon-based reads
Workshop: Flexible read decomposition for improved short read error correction
Cancer Diseases Classification with Sparse Neural Networks: An Information-Theoretic Approach
Statistical Mitogenome Assembly with Repeats
Identification of Disease States for Trauma Patients using Commonly Available Hospital Data
Workshop: Targeting mechanism of epigenetic factors
Decoding Heterogeneity in Quadruple-Negative Breast Cancer: A Data-driven Clustering Approach
Systematic analysis of global features and model building for recognition of antimicrobial peptides
A correlation based matrix completion approach to gene expression prediction
A Benchmarking Study of Random Projections and Principal Components for Dimensionality Reduction Strategies in Single Cell Analysis
Workflow-driven programming paradigms for distributed analysis of biological big data
Poster: Chronic disease prevention: A Translational Bioinformatics approach
Workshop: An efficient data structure for exact-match overlap graphs and next generation sequence assembly
Computational Advances in Bio and Medical Sciences - 13th International Conference, ICCABS 2025, Atlanta, GA, USA, January 12-14, 2025, Revised Selected Papers
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract)
Plastic: An Easy to Use and Modular Tool for Benchmarking Tumor Phylogeny Reconstruction Pipelines
Whole slide images stitching for osteosarcoma detection
Assessing how multiple mutations affect protein stability using rigid cluster size distributions
Modeling genetic heterogeneity in Hepatitis C Virus hyper-variable region 1 infers demographic characteristics of infected hosts
An SVM Based Approach to Study the Racial Disparity in Triple-Negative Breast Cancer
Workshop: Transcript assembly through a d 2 -based MST approach
Fast algorithms for computing phylogenetic divergence time
A systems biology analysis for the whole genome sequencing data
Genome-wide identification and evolutionary analysis of long non-coding RNAs in cereals
The analysis of ordered changes of gene expression and gene-gene co-expression patterns
Hepatitis C virus genetic association to rate of liver fibrosis progression
Treatment Practice Analysis of Intermediate or High Risk Localized Prostate Cancer: A Multi-center Study with Veterans Health Administration Data
Model Selection for Sparse Microbial Network Inference Using Variational Approximation
Computational Advances in Bio and Medical Sciences - 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11-13, 2023, Revised Selected Papers
Lightweight and Generalizable Model for COVID-19 Detection Using Chest Xray Images
Computational Study of Action Potential Generation in Urethral Smooth Muscle Cell
HIV drug resistance prediction using multiple regression
Graph Representation Learning for Protein Conformation Sampling
VGA: A method for viral quasispecies assembly from ultra-deep sequencing data
Link Prediction in Disease-Disease Interactions Network Using a Hybrid Deep Learning Model
Forecasting Model for the Annual Growth of Cryogenic Electron Microscopy Data
Workshop: Algorithms for discovery of mutated pathways in cancer
A New Graph Database System for Multi-omics Data Integration and Mining Complex Biological Information
Poster: Synthesis of biochemical models
Phylogenetic uncertainty and transmission network inference: Lessons from phylogenetic reconciliation
A 3D Deep Learning Architecture for Denoising Low-Dose CT Scans
Higher-order representations of protein structure space
SANJAY: Automatically synthesizing visualizations of flow cytometry data using decision procedures
Characterization of probabilistic signaling networks through signal propagation
Poster: A comparison of local shape descriptors for biological applications
FAC-PIN: Fast agglomerative clustering method for functional modules and protein complex identification in PINs
Enhancing Privacy Preservation and Reducing Analysis Time with Federated Transfer Learning in Digital Twins-Based Computed Tomography Scan Analysis
Poster: A Hidden Markov Model for Copy Number Variant prediction from Whole genome resequencing data
Invited: "Going viral" with biological sequence analysis
Efficient hyperparameter optimization by using Bayesian optimization for drug-target interaction prediction
pDindel: Accelerating indel detection on a multicore CPU architecture with SIMD
Invited: Identifying mutations from TILLING experiments
Keynote: De novo sequencing of novel peptide antibiotics by tandem mass spectrometry
Identification of protein interaction methods from biomedical literature
Workshop: Inferring viral population from ultra-deep sequencing data
Semi-automatic mining of correlated data from a complex database: Correlation network visualization
MetaProb 2: Improving Unsupervised Metagenomic Binning with Efficient Reads Assembly Using Minimizers
Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data
Relabeling Metabolic Pathway Data with Groups to Improve Prediction Outcomes
Workshop: Opportunities and challenges of non-model ecoinformatics
Drug-Centric Prior Improves Drug Response Modeling in Partially Overlapping Pharmacogenomic Screens
Repeated Measures Latent Dirichlet Allocation for Longitudinal Microbiome Analysis
Exploring behaviors of SDE models of biological systems using change of measures
Reconstruction of influenza a virus variants from PacBio reads
Using deliberate-delay decentralized controllers to stop spread dynamics in canonical network models
Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data
Workshop: Error correction methods in next generation sequencing
Invited: Reconciled gene trees and their applications
PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text
Linear Space String Correction Algorithm Using The Damerau-Levenshtein Distance
Poster: Robust estimation of DNA methylation with local regression
Poster: High-performance computing for mapping disease-related genes
A grammar-based approach to RNA pseudoknotted structure prediction for aligned sequences
Analysis of whole genome sequence and genome-wide SNPs in highly inbred pigs
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data
FedDP: Secure Federated Learning with Differential Privacy for Disease Prediction
Detecting patterns of co-variation in deep-sequenced virus populations
Efficient computation of the Damerau-Levenshtein distance between biological sequences
A computational method to aid in the design and analysis of single cell RNA-seq experiments
Concurrent MMBIRFinder
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data
Poster: H3N2 influenza vaccine: A historical perspective
Putting humpty-dumpty together: Mining causal mechanistic biochemical models from big data
A computational method for drug repositioning using publicly available gene expression data
Computational prediction of hinge axes in proteins
A Unified Machine Learning Framework for Multi-subtype Tumour Classification Across Diverse Datasets
Cache and energy efficient algorithms for Nussinov RNA folding
"A global view of how technology is guiding radiation therapeutics for cancers"
Genetic modulation during thymocyte development an integrative approach based on microarray meta-analysis
GRASP2: Fast and memory-efficient gene-centric assembly and homolog search
Efficient techniques for k-mer counting
Haplotype-Based Parallel PBWT for Biobank Scale Data
Template-based prediction of protein 8-state secondary structures
A deterministic-stochastic crossover algorithm for simulation of complex biochemical systems
What can physicians learn from social forums: Insights from an on-line self help and support group
Ensemble Deep TimeNet: An Ensemble Learning Approach with Deep Neural Networks for Time Series
Computational Advances in Bio and Medical Sciences - 10th International Conference, ICCABS 2020, Virtual Event, December 10-12, 2020, Revised Selected Papers
Bcl: : Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System
Extraction of gene regulatory networks from biological literature
EMS3: An Improved Algorithm for Finding Edit-distance Based Motifs
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications
"Poster" a prediction model of traumatic patients outcome by data mining technique
Poster: Applying data mining algorithms to early detection of liver cancer
A deep learning-based segmentation method for brain tumor in MR images
6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2016, Atlanta, GA, USA, October 13-15, 2016
Invited: Metabolic network alignments
Stable stem enabled shannon entropies distinguish non-coding RNAs from random backgrounds
Poster: Modelling the tumor shrinkage pharmacodynamics with BlenX
"Informatics integrated into front end management of radiation oncology patients"
Poster: Designing reusable user-interfaces for browsing a collection of neuroscience ontologies
Parallelizing Peptide-Spectrum scoring using modern graphics processing units
Identification of Chimeric RNAs: A Novel Machine Learning Perspective
Workshop: Taxonomic clustering of large-scale metagnomic data
Studying disorder-to-order transitions from structural analysis
Poster: Parameter estimation for a reduced order spiking neuron model with relevance to in vitro embryonic rat motoneuronal data
8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2018, Las Vegas, NV, USA, October 18-20, 2018
Workshop: Graph compression approaches in assembly
Higher recall in metagenomic sequence classification exploiting Overlapping Reads
Poster: GPU-accelerated artificial neural network for QSAR modeling
Poster: Context-sensitive use of bioinformatics tools with complementary functionalities for hypothesis generation
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
Detecting De Novo Plasmodesmata Targeting Signals and Identifying PD Targeting Proteins
An integrative approach to transcriptional co-regulatory network construction and characterization in Arabidopsis
Predicting bacterial functional traits from whole genome sequences using random forest
In search of perfect reads
Applying Genetic Algorithm with Saltations to MAX-3SAT
Analysis of SARS-CoV-2 Temporal Molecular Networks Using Global and Local Topological Characteristics
An algorithm for mining frequent patterns in biological sequence
Computational cell cycle analysis of single cell RNA-seq data
endo-siRBase: A multi-species developmental endo-siRNA repository and searchable database
Triangulation heuristics for maximum character compatibility
A machine learning framework for trait based genomics
Survey on deep convolutional neural networks in mammography
IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011, Orlando, FL, USA, February 3-5, 2011
Efficient algorithms for sequence assembly
Determining Temporal Linkages in Dynamic Epidemiological Networks Using the Earth Mover's Distance
New automatic and effective tools for genome annotation
An unsupervised learning approach to assembly validation
Discovering non-coding RNA elements in drosophila 3′ untranslated regions
Poster: PRDDs: A Protein Residue Distance & Angle Distribution Database for Secondary Structures
Workshop: The utility of next generation sequencing for genome scale studies