yusuke1997/dblp-id-title huggingface dataset:
A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors
A Clustering Approach to Identify Candidates to Housekeeping Genes Based on RNA-seq Data
Comparative Transcriptome Profiling of Maytenus ilicifolia Root and Leaf
The Trouble with Long-Range Base Pairs in RNA Folding
BDDBlast - A Memory Efficient Architecture for Pairwise Alignments
Prediction of Protein-Protein Binding Hot Spots: A Combination of Classifiers Approach
A Software Tool to Aid in the Search for Intron Markers derived from EST data
Graph Attention Neural Networks Improving Molecular Docking Rank with Protein-Ligand Contact Maps
A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly
Comparing Several Approaches for Hierarchical Classification of Proteins with Decision Trees
A Framework for Inference and Selection of Cell Signaling Pathway Dynamic Models
Sequence Motif Identification and Protein Family Classification Using Probabilistic Trees
Gene Set Enrichment Analysis Using Non-parametric Scores
Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project
Advances in Bioinformatics and Computational Biology - 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23-27, 2020, Proceedings
A comparision between Symbolic and non-symbolic machine learning techniques in automated annotation of the "Keywords" field of SWISS-PROT
Protein Structure Prediction using an enhanced Genetic Algorithm for the 2D HP model
Comparison of Genomic DNA to cDNA Alignment Methods
Modeling cell signaling pathways through universal differential equations and joint inference of first-principle parameters and neural network weights
Exploring Identifiability in Hybrid Models of Cell Signaling Pathways
Metagenomic Insights of the Microbial Community from a Polluted River in Brazil 2020
Intentional Semantics for Molecular Biology
Improving the algorithm of Bafna and Pevzner for the problem of sorting by transpositions
Perturbing Thermodynamically Unfeasible Metabolic Networks
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
Sorting by Weighted Reversals and Transpositions
Multilayer Cluster Heat Map Visualizing Biological Tensor Data
Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow
Advances in Bioinformatics and Computational Biology - 11th Brazilian Symposium on Bioinformatics, BSB 2018, Niterói, Brazil, October 30 - November 1, 2018, Proceedings
Influence of Sequence Length in Promoter Prediction Performance
ContFree-NGS: Removing Reads from Contaminating Organisms in Next Generation Sequencing Data
Transposition Distance Based on the Algebraic Formalism
Make No Mistake! Why Do Tools Make Incorrect Long Non-coding RNA Classification?
Uma implementação Java dos algoritmos mais utilizados na análise de dados de microarray
Water Pollution Shifts the Soil and Fish Gut Microbiomes Increasing the Circulation of Antibiotic Resistance Genes in the Environment
An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability
SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes
transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites
A Hybrid Method for the Protein Structure Prediction Problem
Mesoscopic Evaluation of DNA Mismatches in PCR Primer-Target Hybridisation to Detect SARS-CoV-2 Variants of Concern
A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells
Influence of Antigenic Mutations in Time Evolution of the Immune Memory - A Dynamic Modeling
S^2FS : Single Score Feature Selection Applied to the Problem of Distinguishing Long Non-coding RNAs from Protein Coding Transcripts
Advances in Bioinformatics and Computational Biology - 6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasilia, Brazil, August 10-12, 2011. Proceedings
Fact and Task Oriented System for Genome Assembly and Annotation
Amino Acid Coding with Sliding Window Technique
Structural Comparative Analysis of Secreted NTPDase Models of Schistosoma mansoni and Homo sapiens
Advances in Bioinformatics and Computational Biology, Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings
Mapping HIV-1 Subtype C gp120Epitopes Using a Bioinformatic Approach
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
Detection of Protein Domains in Eukaryotic Genome Sequences
Evolution of Genes Neighborhood within Reconciled Phylogenies: An Ensemble Approach
Deep Learning-Based COVID-19 Diagnostics of Low-Quality CT Images
Associating Genotype Sequence Properties to Haplotype Inference Errors
Evaluating the Generalization of Neural Network-Based Pan-Cancer Classification Models for Cohort-Specific Predictions
Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae
Data Management via Web Services in Bioinformatics Workflows
Advances in Bioinformatics and Computational Biology - 12th Brazilian Symposium on Bioinformatics, BSB 2019, Fortaleza, Brazil, October 7-10, 2019, Revised Selected Papers
Advances in Bioinformatics and Computational Biology - 9th Brazilian Symposium on Bioinformatics, BSB 2014, Belo Horizonte, Brazil, October 28-30, 2014, Proceedings
False Discovery Rate for Homology Searches
On the Pursuit of Optimal Sequence Trimming Parameters for EST Projects
Application of Genetic Algorithms to the Genetic Regulation Problem
On Clustering Validation in Metagenomics Sequence Binning
Representations for Evolutionary Algorithms Applied to Protein Structure Prediction Problem Using HP Model
Bounds on the Transposition Distance for Lonely Permutations
An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters
Real Time Immersive Visualization and Manipulation of the Visible Human Data Set
Sorting λ-Permutations by λ-Operations
Advances in Bioinformatics and Computational Biology, Second Brazilian Symposium on Bioinformatics, BSB 2007, Angra dos Reis, Brazil, August 29-31, 2007, Proceedings
Bioinformatics Tools for HIV-1 Identification in Southern Brazilian States
Study on the Complexity of Omics Data: An Analysis for Cancer Survival Prediction
MathPIP: Classification of Proinflammatory Peptides Using Mathematical Descriptors
Transductive Support Vector Machines for Cancer Diagnosis and Classification of Microarray Gene Expression Data
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome
Assessing the Sex-Related Genomic Composition Difference Using a k-mer-Based Approach: A Case of Study in Arapaima gigas (Pirarucu)
In silico Pathogenomic Analysis of Corynebacterium Pseudotuberculosis Biovar Ovis
Phylogeny from Whole Genome Comparison
Assessing the Accuracy of the SIRAH Force Field to Model DNA at Coarse Grain Level
Influence of Scaffold Stability and Electrostatics on Top7-Based Engineered Helical HIV-1 Epitopes
An approximation algorithm for the problem of sorting by transversals
Phylogeny Trees as a Tool to Compare Inference Algorithms of Orthologs
Importance of Meta-analysis in Studies Involving Plant Responses to Climate Change in Brazil
Semi-supervised Approach for Finding Cancer Sub-classes on Gene Expression Data
AGN Simulation and Validation Model
The Syntenic Distance Problem Using Only Fusions and Fussions
RNA Folding Algorithms with G-Quadruplexes
Identifying Large Scale Conformational Changes in Proteins Through Distance Maps and Convolutional Networks
Reverse Engineering of Genetic Networks Using Variable Length Genetic Algorithms with a Boolean Network Model
Efficiently Querying Protein Sequences with the Proteinus Index
Searching for Non-coding RNA
Random Forest and Gene Networks for Association of SNPs to Alzheimer's Disease
Development of a Computational Environment for Protein Structure Prediction and Functional Analysis
A Clustering Strategy to Find Similarities in Mycoplasma Promoters
RAIDER: Rapid Ab Initio Detection of Elementary Repeats
MSA-GPU: Exact Multiple Sequence Alignment Using GPU
Nonlinear Methods in ElectroEncephalographic Analysis: Artificial Neural Networks and wavelets for Classification of EEG Signals in Individuals at Risk for alcoholism
Aprendizado de Máquina Aplicado ao Estudo de Marcadores Moleculares para Produção de Carne Bovina
An Improvement Over the CODA Filterfor LC-MS Analysis
DNA-Based Modelling of Parallel Algorithms
Comparing Methods for Multilabel Classification of Proteins Using Machine Learning Techniques
Determinação de regiões ortólogas múltiplas
Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees
ViMT - Development of a Web-Based Vivarium Management Tool
SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers
In Silico Analysis of the Genomic Potential for the Production of Specialized Metabolites of Ten Strains of the Bacillales Order Isolated from the Soil of the Federal District, Brazil
Advances in Bioinformatics and Computational Biology, 4th Brazilian Symposium on Bioinformatics, BSB 2009, Porto Alegre, Brazil, July 29-31, 2009. Proceedings
Searching in Silico Novel Targets for Specific Coffee Rust Disease Control
Mutual Information Content of Homologous DNA Sequences
A Systems Biology Driven Approach to Map the EP300 Interactors Using Comprehensive Protein Interaction Network
A Grid Alternative Solution for Protein Folding Studies Applications
Computação Inteligente no Estudo de Variantes de Hemoglobina
Selection of Data Sets of Motifs as Attributes in the Process of Automating the Annotation of Proteins' Keywords
Cyberinfrastructure for PathoSystems Biology
Uma abordagem estatística para identificação de exons
AutoBioLearn: An Automated Data Science Framework for eXplainable Analyses (XAI) of Clinical Datasets
Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms
On the Toric Graph as a Tool to Handle the Problem of Sorting by Transpositions
Efficient Out-of-Core Contig Generation
Publishing and Querying Blast Results Using Grid Services
Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataflows
Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach
Towards a Simpler Semantics for Systems Biology
Super Short Reversals on Both Gene Order and Intergenic Sizes
A CGM/BSP Parallel Similarity Algorithm
circTIS: A Weighted Degree String Kernel with Support Vector Machine Tool for Translation Initiation Sites Prediction in circRNA
Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction
Genotype Tagging with Limited Overfitting
A Conceptual Model for Molecular Biology Information
Skew Handling for Parallel BLAST Processing
An External Memory Approach for Large Genome De Novo Assembly
Advances in Bioinformatics and Computational Biology, Third Brazilian Symposium on Bioinformatics, BSB 2008, Santo André, Brazil, August 28-30, 2008. Proceedings
A Probabilistic Model Checking Approach to Investigate the Palytoxin Effects on the Na + /K + -ATPase
Evaluating Correlation Coefficients for Clustering Gene Expression Profiles of Cancer
A Wide Antimicrobial Peptides Search Method Using Fuzzy Modeling
Stability Evaluation of Clustering Algorithms for Time Series Gene Expression Data
A Multi-Objective Evolutionary Algorithm for Improving Multiple Sequence Alignments
A Scientometric Overview of Bioinformatics Tools in the Pseudomonas Putida Genome Study
A Method for Comparing Three Genomes
Using Natural Language Processing for Context Identification in COVID-19 Literature
Roles of RORα on Transcriptional Expressions in the Mammalian Circadian Regulatory System
Parallel Solution Based on Collective Communication Operations for Phylogenetic Bootstrapping in PhyML 3.0
Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows
A strategy for refining the calculation of contacts in protein-RNA complexes
Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes
The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment
An attempt to lower the upper bound on the transposition diameter
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Evaluating the Molecular - Electronic Structure and the Antiviral Effect of Functionalized Heparin on Graphene Oxide Through Ab Initio Computer Simulations and Molecular Docking
A relational database for COG data
Towards an Ensemble Learning Strategy for Metagenomic Gene Prediction
On the Approximation Ratio of Algorithms for Sorting by Transpositions without Using Cycle Graphs
Comparing RNA Structures: Towards an Intermediate Model Between the Editand the LapcsProblems
Optimized Neural Networks for Breast Cancer Classification Using Gene Expression Data
Heuristics based on Adjacency Graph Packing for DCJ Distance Considering Intergenic Regions
Discretization of Flexible-Receptor Docking Data
Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation
Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes
PIMBA: A PIpeline for MetaBarcoding Analysis
Block-Interchange Distance Considering Intergenic Regions
In silico study of the impact of the PRKAG2-H401Q mutation on AMPK affinity for AMP and ATP
MHC: Peptide Analysis: Implications on the Immunogenicity of Hantaviruses' N protein
Using graph-based structural signatures and machine learning algorithms for molecular docking assessment of histone deacetylases and small ligands
A Multi-Neighbor-Joining Approach for Phylogenetic Tree Reconstruction and Visualization
An SVM Model Based on Physicochemical Properties to Predict Antimicrobial Activity from Protein Sequences with Cysteine Knot Motifs
BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases
Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions
Phylogenetic Distance Computation Using CUDA
A Domain Framework Approach for Quality Feature Analysis of Genome Assemblies
BAT: A New Biclustering Analysis Toolbox
Scientific Workflow Interactions: An Application to Cancer Gene Identification
II Brazilian Workshop on Bioinformatics, December 3-5, 2003, Macaé, RJ, Brazil
Segmentação de Cromossomos de Peixe Usando Conjuntos Difusos
Restricted DCJ-Indel Model Revisited
HIV-I Protease Mutants Molecular Dynamics Research on Grid Computing Environment
Comparison of Machine Learning Pipelines for Gene Expression Matrices
Unraveling Evolutionary Paths: Genomic Divergence and Geographic Secrets of Cylindrospermopsis and Sphaerospermopsis
Venom Gland Peptides of Arthropods from the Brazilian Cerrado Biome Unveiled by Transcriptome Analysis
Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases
Evaluating Machine Learning Models for Essential Protein Identification
An Extensible Framework for Genomic and Metagenomic Analysis
A New Algorithm for Sparse Suffix Trees
A Probabilistic Model Checking Analysis of the Potassium Reactions with the Palytoxin and Na + /K + -ATPase Complex
Using the A3C System for Annotation of Keywords - A Case Study
Cellular Fingerprints: A Novel Concept for the Integration of Experimental Data and Compound-Target-Pathway Relations (Extended Abstract)
Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms
Outlining a Strategy for Screening Non-coding RNAs on a Transcriptome Through Support Vector Machines
A genetic algorithm for the phylogeny problem using an optimized crossover strategy based on path-relinking
Differential Gene Expression in the Auditory System
Phylogenetic Reconstruction from Evolutionary Algorithm using Edge-Set Representation
Enabling Annotation Provenance in Bioinformatics Workflow Applications
Gene Prediction by Syntenic Alignment
A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model
AnaGel: A Distributed System for Storage and Analysis of Electrophoretical Records
A semi-automatic Methodology for localization of Short Mitochondrial Genes in Long Sequences
Analysis of Structure Prediction Tools in Mutated MeCP-2
A Conceptual Model for Transcriptome High-Throughput Sequencing Pipeline
A Genetic Algorithm applied to the Three-Dimensional HP Protein Folding Model
Mapping Contigs onto Reference Genomes
VIZ - A Graphical Open-Source Architecture for Use in Structural Bioinformatics
Splice Junction Recognition using Machine Learning Techniques
A framewok based in Web services orchestration for bioinformatics workflow management
Center Genome with Respect to the Rank Distance
Search for Zinc Complexes with High Affinity in Pyrazinamidase from Mycobacterium Tuberculosis Resistant to Pyrazinamide
Comparison of computational fusion detection methods for short-read RNA-seq data
Machine Learning Techniques for Predicting Bacillus subtilis Promoters
Advances in Bioinformatics and Computational Biology - 7th Brazilian Symposium on Bioinformatics, BSB 2012, Campo Grande, Brazil, August 15-17, 2012. Proceedings
kGC: Finding Groups of Homologous Genes across Multiple Genomes
A Bioconductor Based Workflow for Z-DNA Region Detection and Biological Inference
Accelerating volume rendering with texture hulls
Haptics-based volumetric modeling using dynamic spline-based implicit functions
A two-step approach for interactive pre-integrated volume rendering of unstructured grids
IEEE/SIGGRAPH Symposium on Volume Visualization and Graphics, VolVis 2002, Boston, MA, USA, October 28-29, 2002
Efficient estimation of 3D Euclidean distance fields from 2D range images
OpenGL volumizer: a toolkit for high quality volume rendering of large data sets
Shading for Fourier Volume Rendering
A hardware-assisted hybrid rendering technique for interactive volume visualization
Time-critical multiresolution volume rendering using 3D texture mapping hardware
Feature based volumetric video compression for interactive playback
Interactive visualization of unstructured grids using hierarchical 3D textures
Feature estimation for efficient streaming
Tetrahedral projection using vertex shaders
Space-time points: 4d splatting on efficient grids
Hardware-based view-independent cell projection
Shape retaining chain linked model for real-time volume haptic rendering
Dynamic triangulation of variational implicit surfaces using incremental Delaunay tetrahedralization
Challenges in machine learning application development: an industrial experience report
Operationalizing machine learning models: a systematic literature review
Proceedings of the 1st Workshop on Software Engineering for Responsible AI, SE4RAI 2022, Pittsburgh, Pennsylvania, 19 May 2022
Towards trusting the ethical evolution of autonomous dynamic ecosystems
MLOps: a guide to its adoption in the context of responsible AI
Augur: a step towards realistic drift detection in production ML systems
The concept of ethical digital identities
Robustness testing of a machine learning-based road object detection system: an industrial case
Non-functional requirements for machine learning: an exploration of system scope and interest
Formation Graphs and Decentralized Formation Control of Multi Vehicles with Kinematics Constraints
Global Urban Localization of an Outdoor Mobile Robot with Genetic Algorithms
Incremental Learning of Task Sequences with Information-Theoretic Metrics
Propose of a Benchmark for Pole Climbing Robots
An Ontology of Robotics Science
Stability of On-Line and On-Board Evolving of Adaptive Collective Behavior
Grip Force Control Using Vision-Based Tactile Sensor for Dexterous Handling
Robot Force/Position Tracking on a Surface of Unknown Orientation
Architecture for Neuronal Cell Control of a Mobile Robot
Semi-autonomous Learning of an RFID Sensor Model for Mobile Robot Self-localization
Metric Localization with Scale-Invariant Visual Features Using a Single Perspective Camera
Performance Evaluation of Ultrasonic Arc Map Processing Techniques by Active Snake Contours
A COTS-Based Mini Unmanned Aerial Vehicle (SR-H3) for Security, Environmental Monitoring and Surveillance Operations: Design and Test
Bilateral Control of Different Order Teleoperators
In Situ Autonomous Biomechanical Characterization
Eyes-Neck Coordination Using Chaos
Multi-knowledge Approach for Mobile Robot Identification of a Changing Environment
Optimization and Fail-Safety Analysis of Antagonistic Actuation for pHRI
Rat's Life: A Cognitive Robotics Benchmark
Reduction of Learning Time for Robots Using Automatic State Abstraction
Adaptive Snake Robot Locomotion: A Benchmarking Facility for Experiments
3D Mapping and Localization Using Leveled Map Accelerated ICP
Multilayer Perceptron Adaptive Dynamic Control of Mobile Robots: Experimental Validation
Scalable Operators for Feature Extraction on 3-D Data
Postural Control on a Quadruped Robot Using Lateral Tilt: A Dynamical System Approach
Navigation and Planning in an Unknown Environment Using Vision and a Cognitive Map
Constraint Based Object State Modeling
Measuring Motion Expressiveness in Wheeled Mobile Robots
Efficient Failure Detection for Mobile Robots Using Mixed-Abstraction Particle Filters
Exploiting Distinguishable Image Features in Robotic Mapping and Localization
Image-Based Visual Servoing for Mobile Robots with Catadioptric Camera
Robust Monte-Carlo Localization Using Adaptive Likelihood Models
Information Relative Map Going Toward Constant Time SLAM
Balancing the Information Gain Against the Movement Cost for Multi-robot Frontier Exploration
HNG: A Robust Architecture for Mobile Robots Systems
Path Planning and Tracking Control for an Automatic Parking Assist System
Visual Topological Mapping
First European Robotics Symposium 2006, EUROS 2006, Palermo, Italy
Representation, Recognition and Generation of Actions in the Context of Imitation Learning
Second European Robotics Symposium 2008, EUROS 2008, Prague, Czech Republic
Recovery in Autonomous Robot Swarms
Compiling POMDP Models for a Multimodal Service Robot from Background Knowledge
Adaptive Multiple Resources Consumption Control for an Autonomous Rover
A Multi-agent System Architecture for Modular Robotic Mobility Aids
Visual Top-Down Attention Framework for Robots in Dynamic Environments
Visual Approaches for Handle Recognition
How to Construct Dense Objects with Self-Recondfigurable Robots
The Ares Robot: Case Study of an Affordable Service Robot
A Simple Visual Navigation System with Convergence Property
A Unified Framework for Whole-Body Humanoid Robot Control with Multiple Constraints and Contacts
Modeling, Simulation and Control of Pneumatic Jumping Robot
Reactive Trajectory Deformation to Navigate Dynamic Environments
Planning Robust Landmarks for Sensor Based Motion
Task Decomposition and RAG as Design Patterns for LLM-Based Systems
A Domain Specific Language for Specification of Risk-oriented Object Detection Requirements
Automating Patch Set Generation from Code Reviews Using Large Language Models
Seven Failure Points When Engineering a Retrieval Augmented Generation System
Identification of out-of-distribution cases of CNN using class-based surprise adequacy
Optimizing Data Analytics Workflows through User-driven Experimentation
Pynblint: a static analyzer for Python Jupyter notebooks
Evaluation of The Generality of Multi-view Modeling Framework for ML Systems
Optimizing Data Analytics Workflows Through User-Driven Experimentation: Progress and Updates
Method cards for prescriptive machine-learning transparency
Navigating the Shift: Architectural Transformations and Emerging Verification Demands in AI-Enabled Cyber-Physical Systems
Generating and Verifying Synthetic Datasets with Requirements Engineering
Data smells: categories, causes and consequences, and detection of suspicious data in AI-based systems
Debugging and Runtime Analysis of Neural Networks with VLMs (A Case Study)
Safeguarding LLM-Applications: Specify or Train?