yusuke1997/dblp-id-title huggingface dataset:
Quantum Sequence Analysis: A New Alignment-free Technique For Analyzing Sequences in Feature Space
Analysis of Single Cells on a Pseudotime Scale along Postnatal Pancreatic Beta Cell Development
Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin
Shortest paths ranking methodology to identify alterations in PPI networks of complex diseases
Determining influential miRNA targets in diseases using influence diffusion model
Prediction of Large for Gestational Age Infants in Overweight and Obese Women at Approximately 20 Gestational Weeks
BactAG: a novel method resolving bacterial ancient genomes precisely and automatically
MirLibSpark: A Scalable NGS Plant MicroRNA Prediction Pipeline for Multi-Library Functional Annotation
Analysis of impact of diabetes mellitus in Arkansas and U.S
A multi-instance support vector machine with incomplete data for clinical outcome prediction of COVID-19
Improving the efficiency of de Bruijn graph construction using compact universal hitting sets
ProMVR-Interactive Protein Educational Tool
Protein-protein Docking Using Information from Native Interaction Interfaces
RA2Vec: Distributed Representation of Protein Sequences with Reduced Alphabet Embeddings: RA2Vec: Distributed Representation
Implementing algorithms for sorting by strip swaps
Interpretable Machine Learning Approach Reveals Developmental Gene Expression Biomarkers for Cancer Patient Outcomes at Early Stages
Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes
Distilling Multi-Modal Genomic Knowledge for Drug Response Prediction
Towards sequence-based DNA flexibility analysis
A Distributed Semi-Supervised Platform for DNase-Seq Data Analytics using Deep Generative Convolutional Networks
Leveraging Serverless Computing to Improve Performance for Sequence Comparison
A tripartite clustering analysis on microRNA, gene and disease model
Masher: Mapping Long(er) Reads with Hash-based Genome Indexing on GPUs
Constraint graphs as security filters for privacy assurance in medical transactions
Identifying Harm Events in Clinical Care through Medical Narratives
Real-time peptide identification from high-throughput mass-spectrometry data
decisivatoR: an R infrastructure package that addresses the problem of phylogenetic decisiveness
InterVisAR: An Interactive Visualization for Association Rule Search
Heuristic parallelizable algorithm for similarity based biosystems comparison
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data
A Novel Algorithm for Feature Detection and Hiding from Ultrasound Images
Gazelle: transcript abundance query against large-scale RNA-seq experiments
Bayesian Biomarker Discovery for RNAseq Data
Inferring interaction networks from microbial time series data: it's not just finding a statistic
Analysis and Remedy of Negativity Problem in Hybrid Stochastic Simulation Algorithm and its Application: Extended Abstract
Using Global Network Alignment In The Context Of Aging
Semi-supervised 3D neural networks to track iPS cell division in label-free phase contrast time series images
Using support vector machine for improving protein-protein interaction prediction utilizing domain interactions
In silico designing and experimental validation of a potential small molecule inhibitor against vibrio cholerae AphB: a LysR-type transcriptional regulator
Pisces: An Accurate and Versatile Single Sample Somatic and Germline Variant Caller
Dynamic coordinate registration method for image-guided surgery
An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution
A Neural-network Algorithm for All k Shortest Paths Problem
Deep Convolutional Neural Network for Automated Detection of Mind Wandering using EEG Signals
Evaluating Drug Effectiveness for Antihypertensives in Heart Failure Prognosis: Leveraging Composite Clinical Endpoints and Biomarkers from Electronic Health Records
Portable neurological disease assessment using temporal analysis of speech
3D bone microarchitecture modeling and fracture risk prediction
Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics
Sub-network Based Kernels for Brain Network Classification
Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2019, Niagara Falls, NY, USA, September 7-10, 2019
FiT: fiber-based tensor completion for drug repurposing
Predicting diabetes in imbalanced datasets using neural networks
From gigabyte to kilobyte: a bioinformatics protocol for mining large RNA-Seq transcriptomics data
Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB '14, Newport Beach, California, USA, September 20-23, 2014
Long Non-coding RNA Based Cancer Classification using Deep Neural Networks
Using Machine Learning to Predict the Health of HIV-Infected Patients
SMART: SuperMaximal approximate repeats tool
SurvTRACE: transformers for survival analysis with competing events
A system for acquiring and management of ECG signals by using mobile devices: a support for first intervention in heart attacks
One-shot Biomedical Named Entity Recognition via Knowledge-Inspired Large Language Model
Objective risk stratification of prostate cancer using machine learning and radiomics applied to multiparametric magnetic resonance images
Fair evaluation of global network aligners
Variational Bayesian clustering on protein cavity conformations for detecting influential amino acids
SEQUOIA: Significance enhanced network querying through context-sensitive random walk and minimization of network conductance
Stability Analysis of Population Dynamics Model in Microbial Biofilms with Non-participating Strains
Optimizing K-Mer Fingerprint Generation for Machine Learning
Genome-scale Estimation of the Tree of Life
Intelligent pattern recognition and applications
Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets
De novo assembly of ultra-deep sequencing data
Gene-disease-drug link prediction using tripartite graphs
PhenoGeneRanker: A Tool for Gene Prioritization Using Complete Multiplex Heterogeneous Networks
Semantic classification and dependency parsing enabled automated bio-molecular event extraction from text
Applying graph convolution neural network in digital breast tomosynthesis for cancer classification
Finding Conserved Patterns in Multilayer Networks
A Voice-Aware System for Vocal Wellness
Interpretive Time-Frequency Analysis of Genomic Sequences
Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids
B-cell epitope prediction for peptide-based vaccine design: towards a paradigm of biological outcomes
Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions
Geometric visualization of TF binding sites in context
ParBio'17: 6th Workshop on Parallel and Cloud-based Bioinformatics and Biomedicine
ENCORE: A Visualization Tool for Insight into Circadian Omics
Hybrid pattern matching for complex ontology term recognition
Mapping short sequencing reads to distant relatives
Feature selection for characterizing HLA class I peptide motif anchors
Approximate string-matching with a single gap for sequence alignment
Applying Bayesian Changepoint Model and Hierarchical Divisive Model for Detecting Anomalies in Clinical Decision Support Alert Firing
A multi-tier data mining workflow to analyze the age related shift from diglycosylated- to tetra-glycosylated-FSH secretion by the anterior pituitary
Determining Optimal Features for Predicting Type IV Secretion System Effector Proteins for Coxiella burnetii
A workflow for the computational identification of candidate regulatory elements in noncoding DNA
Chromatin and genomic determinants of alternative splicing
Exact ILP solutions for phylogenetic minimum flip problems
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology
Classifying Proteins by Amino Acid Variations of Sequence Patterns
Automated Threshold Selection for Cryo-EM Density Maps
L2 Normalization and Geodesic Distance for Enhanced Information Preservation in Visualizing High-dimensional Single-cell Sequencing Data
Analysis of Controls in ChIP-seq
Feature subset selection for inferring relative importance of taxonomy
Exploratory Studies Detecting Secondary Structures in Medium Resolution 3D Cryo-EM Images Using Deep Convolutional Neural Networks
Counting cells in 3D confocal images based on discriminative models
PMSA-Net: A parallel multi-scale attention network for MI-BCI classification
Predicting acute events using the movement patterns of older adults: an unsupervised clustering method
New Machine Learning Algorithms for Genome Annotation
Systems biology approach to identify markers of differentiation in bladder cancer
Choosing Non-redundant Representative Subsets Of Protein Sequence Data Sets Using Submodular Optimization
Robust Kernel Canonical Correlation Analysis to Detect Gene-Gene Interaction for Imaging Genetics Data
Model-based study of the Effectiveness of Reporting Lists of Small Feature Sets using RNA-Seq Data
TrialDura: Hierarchical Attention Transformer for Interpretable Clinical Trial Duration Prediction
Finding informative genes for prostate cancer: a general framework of integrating heterogeneous sources
A molecular systems analysis of HOX PPI networks in hematopoiesis and leukemogenesis
PEARL: Prototype Learning via Rule Learning
Minimizing Reference Bias: The Impute-First Approach for Personalized Genome Analysis
A Novel Pupillometric-Based Application for the Automated Detection of ADHD Using Machine Learning
Promises and challenges in analysis of biological big data
Temporal analysis of social determinants associated with COVID-19 mortality
Performance Evaluation of Viral Infection Diagnosis using T-Cell Receptor Sequence and Artificial Intelligence
Improved machine learning models for predicting selective compounds
Gene Set Cultural Algorithm: A Cultural Algorithm Approach to Reconstruct Networks from Gene Sets
Machine Learning for Biomarker Discovery in Cancer Pharmacogenomics Data
The systems toxicology challenge: how to leverage omics data to predict mechanisms of toxicity?
FHIRViz: Multi-Agent Platform for FHIR Visualization to Advance Healthcare Analytics
ℓ0DL: Joint Image Gradient ℓ0-norm With Dictionary Learning for Limited-angle CT
Identifying Impactful Pairs of Insertion Mutations in Proteins
gPSRM: A generative propensity score-based replay memory for deep reinforcement learnings
Reverse engineering molecular hypergraphs
STEROID: in silico heuristic target combination identification for disease-related signaling networks
An effective approach for mining frequent patterns in multiple biological sequences
ChatASD: A Dialogue Framework for LLMs Enhanced by Autism Knowledge Graph Retrieval
Evolving Conformation Paths to Model Protein Structural Transitions
Canonical Representation of Biological Networks Using Graph Convolution
A combinatorics based solution for input generation in the context of classification frameworks aimed to learning interacting protein class
Computational methods for alternative splicing detection using RNA-seq
Parallel computation and interactive visualization of time-varying solvent excluded surfaces
Identification of co-existing embeddings of a motif in multilayer networks
A less biased analysis of metalloproteins' coordination geometries
A collective NMF method for detecting protein functional module from multiple data sources
SeqBench: A Benchmark Suite for Lossless and Lossy Compression of Sequence Data
An Integrative Approach to Building Regulatory Potential-Weighted Gene Regulatory Networks: A Leiomyoma Case Study
Efficient SDH computation in molecular simulations data
Characterizing Building Blocks of Resource Constrained Biological Networks
Color distribution can accelerate network alignment
Automatically measuring dyspigmentation severity of the skin using a convolutional neural network
Explorations in Very Early Prognosis of the Human Immune Response to Influenza
A schema-matching tool for Alzheimer's disease data integration
DeepNote-GNN: predicting hospital readmission using clinical notes and patient network
Ensemble Convolution Neural Network with a Simple Voting Method for Lung Tumor Detection
Using a Network Approach to Identify Genes Important during Anther Development
Segmenting thoracic cavities with neoplastic lesions: a head-to-head benchmark with fully convolutional neural networks
Exploring objective functions and cross-terms in the optimization of an energy function for protein design
Incorporating Gene Annotations as Node Metadata to Improve Network Centrality Measures for Better Node Ranking
Scheduling of virtual screening application on multi-user pilot-agent platform on grid/cloud to optimize the stretch
TrialEnroll: Predicting Clinical Trial Enrollment Success with Deep & Cross Network and Large Language Models
Modeling long-term dependencies and short-term correlations in patient journey data with temporal attention networks for health prediction
The National Sleep Research Resource: Towards a Sleep Data Commons
Predicting aneurysmal degeneration of type B aortic dissection with computational fluid dynamics
Multi-channel synapse validation on confocal images of mammalian neurons
A Network-based Machine Learning Approach for Identifying Biomarkers of Breast Cancer Survivability
Modularity Analysis of Bipartite Networks and Multivariate ANOVA for Identification of Differentially Expressed Proteins in a Mouse Model of Down Syndrome
Rich Chromatin Structure Prediction from Hi-C Data
Promoter prediction based on a multiple instance learning scheme
Using electronic health records to accurately predict COVID-19 health outcomes through a novel machine learning pipeline
COP-E-CAT: cleaning and organization pipeline for EHR computational and analytic tasks
A graph-based approach for computational model of bone microstructure
A Correlation Network Model Utilizing Gait Parameters for Evaluating Health Levels
An ACO based functional module detection algorithm for protein interaction networks
Feedback Regulation of Immune Response to Maximum Exercise in Gulf War Illness
Introduction to 2019 ACM-BCB Highlights Session
Spectral feature selection and its application in high dimensional gene expression studies
Discovering overlapping modules and bridge proteins in proteomic networks
Clustering for bioinformatics via matrix optimization
OCoM-SOCoM: Combinatorial Mutagenesis Library Design Optimally Combining Sequence and Structure Information
Evidence of post translational modification bias extracted from the tRNA and corresponding amino acid interplay across a set of diverse organisms
A Last Genetic Contact Tree Generation Algorithm for a Set of Human Populations
An evolutionary approach to data valuation
Large-Scale Machine Learning Algorithms for Biomedical Data Science
ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues
FiSSC: Finding smallest sequence covers to sets of degenerate reads with applications to RNA editing
Use of ternary similarities in graph based clustering for protein structural family classification
An author topic analysis on NCI DCP/DCCPS PIs
Notch Signaling Plays an Important Role in mTEC Specification during Fetal Thymus Development
Comparative analysis of biclustering algorithms
Using inversion signatures to generate draft genome sequence scaffolds
Community Detection for Decoy Selection in Template-free Protein Structure Prediction
Pheno-mapper: an interactive toolbox for the visual exploration of phenomics data
MetaNN: Accurate Classification of Host Phenotypes From Metagenomic Data Using Neural Networks
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks
The solution space of genome sequence alignment and LIS graph decomposition
Development of a Polymer-Theoretic Approach to Describing Constraints on Reactions Between Antipeptide Antibodies and Intrinsically Disordered Peptide Antigens: Implications for B-Cell Epitope Prediction
Experimental evaluation of OntoPIN: an ontology-annotated PPI database
Faster Computation of Genome Mappability
AcrTransAct: Pre-trained Protein Transformer Models for the Detection of Type I Anti-CRISPR Activities
Spatiotemporal attention boosts calling of complicated variations from long reads' alignment data
Modeling Incidental Findings in Radiology Records
Comparing Type 2 Diabetes Self-Management Apps Against the Needs of Low-Income Minority Patients: Is There An Implicit Functionality Bias?
Orientations of beta-strand traces and near maximum twist
Auto-ASD-Network: A Technique Based on Deep Learning and Support Vector Machines for Diagnosing Autism Spectrum Disorder using fMRI Data
Deep autoencoder neural networks for gene ontology annotation predictions
High Dimensional Ensemble Neuronal Activity Pattern Analysis: Visualization and Wave Detection Focused
On clinical decision support
Development of a Scalable Method for Creating Food Groups Using the NHANES Dataset and MapReduce
Exponentially Few RNA Structures are Designable
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game
A value-based approach for training of classifiers with high-throughput small molecule screening data
AttCON-Homo: Attention and PLMs-enhanced Neural Networks for Predicting Inter-chain Contacts and Distances in Homo-oligomeric Protein Complexes
Parallel simulation of multiple proteins through a bioreactor coupled with biochemical reactions
Toward an analytical framework for proteomics software
Cohesion-driven Online Actor-Critic Reinforcement Learning for mHealth Intervention
Use of the Informatics for Integrating Biology and the Bedside (i2b2) Population to Test Serum Bilirubin Levels and Risk for Inflammatory Bowl Diseases and the Involvement of Uridine Glucuronosyltransferase Genes
Ensemble Voting Schemes that Improve Machine Learning Models for Predicting the Effects of Protein Mutations
Focus: a new multilayer graph model for short read analysis and extraction of biologically relevant features
A fast and lightweight filter-based algorithm for circular pattern matching
On de novo Bridging Paired-end RNA-seq Data
Assessing the collective disease association of multiple genomic loci
Effective Utilization of Paired Reads to Improve Length and Accuracy of Contigs in Genome Assembly
Analysis of molecular networks
Team building without boundaries
Relation Extraction for Protein-protein Interactions Affected by Mutations
AccuRMSD: a machine learning approach to predicting structure similarity of docked protein complexes
DeePSP-GIN: identification and classification of phage structural proteins using predicted protein structure, pretrained protein language model, and graph isomorphism network
A novel representation of HLA allele specificity and prediction algorithm for HLA class I binding
Global network alignment in the context of aging
Scalable deep learning for healthcare: methods and applications
Biological interpretation of morphological patterns in histopathological whole-slide images
Clustering Coefficients in Protein Interaction Hypernetworks
Designing an ontology to support the creation of diagnostic decision support system
Agile Clinical Decision Support Development and Implementation
Identifying Evolutionary Origins of Repeat Domains in Protein Families
A Flexible and Robust Multi-Source Learning Algorithm for Drug Repositioning
Molecular tweeting: unveiling the social network behind heterogeneous bacteria populations
CERENKOV: Computational Elucidation of the Regulatory Noncoding Variome
MCWCM: Multi-Criteria Ranking and Weighted Control Model for Identifying Key Drivers in cancer
A multi-omics graph database for data integration and knowledge extraction
Biological assessment of grid and spot detection in cDNA microarray images
Text-to-ESQ: A Two-Stage Controllable Approach for Efficient Retrieval of Vaccine Adverse Events from NoSQL Database
Trimer Protein-Protein Complex Interface Interacting Residue Pairs Prediction Using Deep Learning Approach
An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up Proteomics
Deep Ranking in Template-free Protein Structure Prediction
Manhattan Path-Difference Median Trees
Deep Neural Network Modeling for Phenotypic Prediction of Metagenomic Samples
ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome
Multi-Group Tensor Canonical Correlation Analysis
Towards an OWL-based framework for extracting information from clinical texts
Detecting and Subtyping Anomalous Single Cells with M2ASDA
Deconvolution of cell-free DNA in cancer liquid biopsy using a deep AutoEncoder
Fast and memory-efficient scRNA-seq k -means clustering with various distances
FStitch: a fast and simple algorithm for detecting nascent RNA transcripts
A CNN-based cell tracking method for multi-slice intravital imaging data
Transformer-based unsupervised patient representation learning based on medical claims for risk stratification and analysis
Automated ranking of stem cell colonies by translating biological rules to computational models
Whole-genome immunoinformatic analysis of Mycobacterium tuberculosis towards large scale identification of immunodominant CD8 epitopes
Using BioDepot-workflow-Builder to Create and Execute Reproducible Bioinformatics Workflows
Population-scale Genomic Data Augmentation Based on Conditional Generative Adversarial Networks
An Island-Based Approach for Differential Expression Analysis
A noise-aware method for building radiation hybrid maps
Highly conserved and associated HIV-1 CTL and T-Helper epitopes in global HIV-1 population: potential candidates for multi-epitope HIV-1 vaccine
HECTOR: a novel paradigm for correcting short reads
A Method for Fully Automated Particle Picking in Cryo-Electron Microscopy Based on a CNN
Gaussian logic and its applications in bioinformatics
A computational exploration of gene regulation by nucleosome position
Flexible RNA design under structure and sequence constraints using formal languages
Diagnosing Schizophrenia: A Deep Learning Approach
Supervised logistic principal component analysis for pathway based genome-wide association studies
Are we there yet?: feasibility of continuous stress assessment via wireless physiological sensors
Affinity limits in B-cell epitope prediction for immunity mediated by antipeptide antibodies
Image processing segmentation algorithms evaluation through implementation choices
Faster coevolution detection of proteins using maximum similar cliques
Introducing a Text Annotation Tool (OntoMate), Assisting Curation at Rat Genome Database
Identifying pair-wise gene functional similarity by multiplex gene expression maps and supervised learning
Towards targeted combinatorial therapy design for the treatment of castration-resistant prostate cancer
Genome dynamics in coevolved genomes: database management system for tracing mutations
Building Personality-Adaptive Conversational AI for Mental Health Therapy
State Diagrams for Automating Disease "Risk Pyramid" Data Collection and Tailored Clinical Decision Support
Low resource recognition and linking of biomedical concepts from a large ontology
Structure- and Energy-based Analysis of Small Molecule Ligand Binding to Steroid Nuclear Receptors
Nuclear localization signal prediction based on sequential pattern mining
A machine-learning approach to retrieving diabetic retinopathy images
Services4SNPs: A RESTful Platform for Association Rule Mining and Survival Analysis of Genotyping Data
Robust differential co-expression discovery: an insight into pharmacodynamics of tyrosine kinase inhibitor
Drug Repositioning Predictions by Non-Negative Matrix Tri-Factorization of Integrated Association Data
Predicting protein secondary structure by an ensemble through feature-based accuracy estimation
Seq2seq Fingerprint: An Unsupervised Deep Molecular Embedding for Drug Discovery
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses
Prokaryotic Autolysin Database Construction
TRuML: A Translator for Rule-Based Modeling Languages