yusuke1997/dblp-id-title huggingface dataset:
Poster: Diagnosing and treating code-duplication problems in bioinformatics libraries
Poster: Quantification of correlations between sleep spindles in EEG for patients with sleep apnea
An SVM-based approach for discovering splicing junctions with RNA-Seq
Scalable heuristics for clustering biological graphs
A privacy-preserving framework for distributed clinical decision support
AFA: Abstract Functional Analysis Identifies New Microglial Subtypes at Single Cell Level in Alzheimer's Disease
On the Hardness of Wildcard Pattern Matching on de Bruijn Graphs
DuoHash: Fast Hashing of Spaced Seeds with Application to Spaced K-mers Counting
InfoTrim: A DNA read quality trimmer using entropy
JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples
Metabolic Pathway Prediction using Non-negative Matrix Factorization with Improved Precision
A combinatorial algorithm to identify independent and recurrent copy number aberrations across cancer types
Inferring Relationships in Microbiomes from Signed Bayesian Networks
Computational Advances in Bio and Medical Sciences - 9th International Conference, ICCABS 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers
Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences
Optimizing pooling strategies for the massive next-generation sequencing of viral samples
Efficient RNA folding using Zuker's method
IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014, Miami, FL, USA, June 2-4, 2014
Invited: Discovering combinatorial biomarkers
Redundant interactions in protein rigid cluster analysis
Poster: A lung cancer mortality risk calculator based on SEER data
Hierarchical factor modeling of proteomics data
Efficient pairwise statistical significance estimation for local sequence alignment using GPU
Poster: A neighbor-weighted K-nearest neighbor method for predicting protein subnuclear localizations
Cancer and Tissue Prediction Using Mutational Signatures in Highly Mutated Cancers
Poster: Clustering-based approach for constructing reliable radiation hybrid framework maps
A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples
Poster: Haplotype discovery from high-throughput sequencing data
Deterministic regression algorithm for transcriptome frequency estimation
Improving Disease Comorbidity Prediction with Biologically Supervised Graph Embedding
Workshop: Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association
Workshop: Inference of allele specific expression levels from RNA-Seq data
An SVM-based approach for genotyping deletions and insertions with population sequence reads
Poster: Auto-reduction of features for containing communication costs in a distributed privacy-preserving clinical decision support system
Exploring a Solution Curve in the Phase Plane for Extreme Firing Rates in the Izhikevich Model
Poster: De novo protein identification by dynamic programming
Workshop: Reconstructing the organization of cancer genomes
Topological implications of negative curvature for biological networks
Image Based Detection of Craniofacial Abnormalities using Feature Extraction by Classical Convolutional Neural Network
DNA Methylation Based Subtype Classification of Breast Cancer
InfoBarcoding: Selection of non-contiguous sites in molecular biomarker
Computational analysis of drug addiction epidemiology by integrating molecular mapping and social media signals
Addressing Classification on Highly Imbalanced Clinical Datasets
MetaEdit: Computational Identification of RNA Editing in Microbiomes
Latent Variable Modelling and Variational Inference for scRNA-seq Differential Expression Analysis
A deep learning method for lincRNA identification using auto-encoder algorithm
Invited: A novel perspective in algorithmic combinatorial methods for phasing populations in a coalescent model
Calibration of stochastic biochemical models against behavioral temporal logic specifications
MATria: A unified centrality algorithm
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution
An improved maximum likelihood formulation for accurate genome assembly
Demarcation of bacterial ecotypes from DNA sequence data: A comparative analysis of four algorithms
CAMSA: A tool for comparative analysis and merging of scaffold assemblies
Dynamic Bayesian brain network partition and connectivity change point detection
Challenges of using RNA-seq in the clinical setting
Identifying hotspots in five year survival electronic health records of older adults
Efficient exact algorithms for LDD motif search
Faster Computation of Genome Mappability with one Mismatch
Workshop: A maximum likelihood method for quasispecies spectrum assembly
2SNV: Quasispecies reconstruction from PacBio reads
Are circulating type 2 Vaccine-Derived Polioviruses (VDPVs) genetically distinguishable from immunodeficiency-associated VDPVs?
Highlights: Predicting the cross-immunoreactivity of hepatitis C virus hyper-variable region 1 peptides using polynomial neural networks
A new multi-level thresholding algorithm for finding peaks in ChIP-Seq data
Identifying differentially regulated genes
Multilayer Network Analysis of Brain Signals for Detecting Alzheimer's Disease
Single molecule sequencing-guided scaffolding and correction of draft assemblies
Workshop: Calling Structural Variation with low-coverage sequencing data by mapping to focal region
NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads
Poster: MIGL - a database for identifying the mechanisms of intron gain and loss
Probing of viral diversity by global haplotype prediction
Multi-allelic positional burrows-wheeler transform
Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences
Poster: Scaffolding draft genomes using paired sequencing data
Towards accurate modeling for protein rigidity analysis
Constructing regulatory gene set networks to reveal novel insights into biological systems
Cluster analysis of genome-wide expression differences in disease-unaffected ileal mucosa in inflammatory bowel diseases
Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition
Poster: De novo expression fragment assembly from Spanning Trees (EAST)
Autoencoder Based Methods for Diagnosis of Autism Spectrum Disorder
Poster: Towards finding unknown genes: The GenomePro framework
Detecting intermediate protein conformations using algebraic topology
Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
Unsupervised Learning for Tertiary Structure Prediction of Protein Molecules: Systematic Review
Identification of intrinsic disorder in complexes from Protein Data Bank
Identifying significant mutations in large cohorts of cancer genomes
On Multi-phase Metagenomics Reads Binning
Workshop: Robust algorithms for inferring haplotype phase and deletion polymorphism from high-throughput whole genome sequence data
Encoder-Decoder Architectures for Clinically Relevant Coronary Artery Segmentation
PartialFibers: An Efficient Method for Predicting Drug-Drug Interactions
Identifying cancer biomarkers by knowledge discovery from medical literature
Model based clustering approach for identifying structural variation using next generation sequencing data
Resistance Genes are Distinct in Protein-Protein Interaction Networks According to Drug Class and Gene Mobility
Effects of Various Alpha-1 Antitrypsin Supplement Dosages on the Lung Microbiome and Metabolome
A Simple and Interpretable Deep Learning Model for Diagnosing Pneumonia from Chest X-Ray Images
Poster: Assessing the content of active endogenous LINE1 retrotransposons in human colorectal cancer samples using high-throughput pyrosequencing
The Agility of a Neuron: Phase Shift Between Sinusoidal Current Input and Firing Rate Curve
Pairwise sequence alignment for very long sequences on GPUs
mcPBWT: Space-Efficient Multi-column PBWT Scanning Algorithm for Composite Haplotype Matching
Periodic rigidity of protein crystal structures
SIPPER: A flexible method to integrate heterogeneous data into a metabolic network
Poster: Image registration and visualization tool for in-situ gene expression images
Keynote: High-resolution sequence and chromatin signatures predict transcription factor binding in the human genome
RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networks
Finding consensus stable local optimal structures for aligned RNA sequences
Semantics-oriented data science and computational life sciences: Innovative application of semantic technologies in microRNA and lncRNA research
7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2017, Orlando, FL, USA, October 19-21, 2017
Poster: Risk prediction for post-operative adverse outcomes in colorectal cancer surgery
An improved statistics-based backbone torsion potential energy for protein loop structure modeling
Pairing T Cell Receptor α and β sequences using pooling and min-cost flows
Leveraging RNA LLMs for 3D Structure Prediction via Data Augmentation
Distinguishing long non-coding RNAs from mRNAs using a two-layer structured classifier
Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier
Computing Gram Matrix for SMILES Strings Using RDKFingerprint and Sinkhorn-Knopp Algorithm
Large-scale metagenomic clustering via quasi clique enumeration and read assignment ambiguity resolution
Enhancing Protein Side Chain Packing Using Rotamer Clustering and Machine Learning
Invited: Multiclass RNA function classification using next-generation sequencing
Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling
Viral quasispecies assembly from paired-end reads
POSTER: "Pseudomonas fluorescens Strain NCIMB 11764, a unique bacterium with cyanide adaptation features"
Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue
Poster: Comprehensive pharmacogenomic pathway screening by data assimilation
Evaluation of peak calling approaches for genome-wide MBD2-based Methyl-Seq profiling
Invited: Fast and theoretically strong algorithms for kinship discovery
Network model and efficient method for detecting relative duplications or horizontal gene transfers
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system
Efficient detection of viral transmission with threshold-based methods
Out of one, many: Exploiting intrinsic motions to explore protein structure spaces
Towards accelerating molecular modeling via multi-scale approximation on a GPU
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics
Workshop: Bioinformatics pipeline for fosmid based molecular haplotype sequencing
Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus
A simple and economical method for improving whole-genome alignment
From ESTs to ESRs: Comparative analysis of mutually exclusive exons in 15 species of insects
Poster: Quasi-Monte Carlo method in population genetics parameter estimation
Optimized Multiple Fluorescence Based Detection in Single Molecule Synthesis Process Under High Noise Level Environment
Improving bisulfite short-read mapping efficiency with hairpin-bisulfite data
Using triangulation to include target structure improves drug resistance prediction accuracy
Poster: Issues in functional characterization and clustering of genes by literature mining
Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm
Maximum expected accurate structural neighbors of an RNA secondary structure
Feature Selection for Identification of Risk Factors Associated with Infant Mortality
Reference assisted nucleic acid sequence reconstruction from mass spectrometry data
Keynote: Aspects of fractionation
Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems
Memory efficient assembly of human genome
5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015, Miami, FL, USA, October 15-17, 2015
Unified SAT-Solving for Hard Problems of Phylogenetic Network Construction
Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps
Advance on curvelet application to prostate cancer tissue image classification
Poster: Identification and classification of internal repeats in proteins
On problem of orienting ordered scaffolds
Poster: User-centered query expansion model for health disparities research
Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination
UPS-indel: A better approach for finding indel redundancy
PMS6: A fast algorithm for motif discovery
Parameter discovery for stochastic computational models in systems biology using Bayesian model checking
A new gene subset selection approach based on linearly separating gene pairs
A Multi-hypothesis Learning Algorithm for Human and Mouse miRNA Target Prediction
Phosphorylation sites prediction using Random Forest
Poster: ViSpA: Viral spectrum assembling method
Poster title (mass spectrometric protein profiling analyses of pathological and physiological hypertrophy cardiac muscle tissues)
Ancient angiosperm hexaploidy meets ancestral eudicot gene order
Breast cancer subtype identification using machine learning techniques
Rigidity and flexibility of protein-nucleic acid complexes
Maximum likelihood parameter estimation in a stochastic resonate-and-fire neuronal model
Computationally resolving heterogeneity in mixed genomic samples
Are physicians ready to utilize genomics to achieve personalized practice and what do they desire to have in a patient genomic information system?
Accurate prediction of human miRNA targets via graph modeling of miRNA-target duplex
Optimizing Deep Learning for Biomedical Imaging
DNA Read Feature Importance Using Machine Learning for Read Alignment Categories
Differential gene expression analysis using coexpression and RNA-Seq data
Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput Sequencing
The Human Microbiome: a New Frontier That Might Just Affect Everything
Computational Cell Cycle Analysis of Single Cell RNA-Seq Data
Optimization of IMRT treatment plan with Kinetic Data Structures
Deep Learning and Networks for Integrative Analysis of Multi-Omic Data
Can Language Models Reason About ICD Codes to Guide the Generation of Clinical Notes?
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data
Extracting association rules from liver cancer data using the FP-growth algorithm
Poster: Gene regulatory network inference using time lagged context likelihood of relatedness
Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs
Keynote: A systems biology approach to integrative cancer genomics
Computational Tumor Progression Analysis via Seriation Based Trajectory Inference
Poster: Efficient record linkage techniques
Accelerating gene regulatory networks inference through GPU/CUDA programming
Mutational robustness of hepatitis C virus intra-host variants
An Explainable Deep Learning Framework for Mandibular Canal Segmentation from Cone Beam Computed Tomography Volumes
AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome Samples
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012
Multicore and GPU algorithms for nussinov RNA folding
Prediction of back-splicing sites reveals sequence compositional features of human circular RNAs
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract)
Inferring serum proteolytic activity from LC-MS/MS data
Classification of HCV infections through sequence image normalization
Epistatic Density of Viral Variants in Acute and Chronic HCV Patients
riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data
Application of Hybrid Glass-Timber Elements in Architecture
Planar Panelization with Extreme Repetition
Advances in Architectural Geometry, AAG 2010, Vienna, Austria, September 18-21, 2010
Liquid rock - Agent based modeling for concrete printing
Case Studies in Cost-Optimized Paneling of Architectural Freeform Surfaces
From Nature to Fabrication: Biomimetic Design Principles for the Production of Complex Spatial Structures
Architectural Acoustics for Practitioners
Using non-linear logic for construction of self-stabilizing hammock structure
Advanced Topology Optimization Methods for Conceptual Architectural Design
The Master-Builder-Geometer
The Geometry of the Error
Biomimetic Lightweight Timber Plate Shells: Computational Integration of Robotic Fabrication, Architectural Geometry and Structural Design
Variational Tangent Plane Intersection for Planar Polygonal Meshing
The use of virtual work for the formfinding of fabric, shell and gridshell structures
Geometrical Solution Space for Grid Structures with Double-Walled Edges
Topology finding of structural patterns
Oasis of light - Manufacturing the cladding of the Louvre Abu Dhabi
Topologic: Tools to explore architectural topology
The Caterpillar Gallery: Quadratic Surface Theorems, Parametric Design and Digital Fabrication
Architectural Caustics - Controlling Light with Geometry
Simulation of Aggregate Structures in Architecture: Distinct-Element Modeling of Synthetic Non-convex Granulates
Constructing Complex Geometries: A Case Study on the Cité des Civilisations du Vin in Bordeaux, France
Environmental-performance morphology generation: Combining physical wind tunnel and dynamic building model
Self-Detailing and Self-Documenting Systems for Wood Fabrication: The Burj Khalifa
Thinking Topologically at Early Stage Parametric Design
Design and construction of curved support structures with repetitive parameters
Vision to Reality - the Materialization of the Emirates Air-Line (London Cable Car)
Freeform Rigid-Foldable Structure using Bidirectionally Flat-Foldable Planar Quadrilateral Mesh
Nuit Blanche Pavilion, Using the Elasticity of Polymers to Self-stabilize a Structure
Adapting architectural form to digital fabrication constraints
Post-tensioned Discrete Concrete Elements Developed for Free-form Construction
Spatial Information Modeling of Buildings Using Non-Manifold Topology with ASM and DesignScript
Form finding and design of a timber shell-nexorade hybrid
Ortho-Pictures: 3D Objects from Independent 2D Data Sets
Euclid: An Open, Cross-Platform, Cloud Geometry Optimizer and Library
Interlocking Folded Plate: Integrated Mechanical Attachment for Structural Wood Panels
New Opportunities to Optimize Structural Designs in Metal by Using Additive Manufacturing
Pre-defined Open Linear Folded Stripes
Interactive Modeling of Architectural Freeform Structures: Combining Geometry with Fabrication and Statics
Tiling Freeform Shapes With Straight Panels: Algorithmic Methods
Realisation of Complex Precast Concrete Structures Through the Integration of Algorithmic Design and Novel Fabrication Techniques
Beyond the basket case: A principled approach to the modelling of kagome weave patterns for the fabrication of interlaced lattice structures using straight strips
Assembly of shells with bi-stable mechanism
Bitmap-driven Parametric Wall for Robotic Fabrication
Computational design of deployable auxetic shells
Discrete CMC surfaces for doubly-curved building envelopes
Interlocking Manifold Kinematically Constrained Multi-material Systems
Computational design of robotically assembled spatial structures
Quasiisothermic Mesh Layout
Topology Optimisation of Regular and Irregular Elastic Gridshells by Means of a Non-linear Variational Method
Lamella Flock
A Graph-Based Approach for Discovery of Stable Deconstruction Sequences
AAG 2018, Advances in Architectural Geometry, Gothenburg, Sweden, September 22-25, 2018
The Sphere Project - Negotiate geometrical representations from design to production
LAR-ABC, a Representation of Architectural Geometry from Concept of Spaces, to Design of Building Fabric, to Construction Simulation
Aligning principal stress and curvature directions
Modular Fibrous Morphologies: Computational Design, Simulation and Fabrication of Differentiated Fibre Composite Building Components
Computational Design and Construction of Notch-Free Reciprocal Frame Structures
Surface Panelization Using Periodic Conformal Maps
Advances in Architectural Geometry, AAG 2014, London, UK, September 18-21, 2014
Towards Teaching Generative Design in Architecture
Interactive Freeform Design of Tensegrity
Statics-Sensitive Layout of Planar Quadrilateral Meshes
Louvre Abu Dhabi 1/33 - Fabrication of a large-scale physical light-test model
Cladding Freeform Surfaces with Curved Metal Panels - a Complete Digital Production Chain
Linkage Fabric Behavior Modeling: A Case Study of Chainmail
Designing Symmetric Derivatives of the Miura-ori
Intuitive Design Exploration of Constrained Meshes
Nuclear thresholds: Geometric strategies for flexible cord assemblies
Compression Support Structures for Slabs
Algorithmic Optimization of the Cross-Section Distribution Across a Steel Framework Structure
Volumetric modelling for 3D printed architecture
A Stretcher Bond with Defects Applied to a Hyperboloid
Offset Folding
Concurrent Geometric, Structural and Environmental Design: Louvre Abu Dhabi
The Ongreening Pavilion
Gaudi's Puffy Jacket: A Method for the Implementation of Fabric Slump Casting in the Construction of Thin-Wall Funicular Vault Structures
Geometry of Structural Form
Wiggled Brick Bond
Form Finding of Twisted Interlaced Structures: A Hybrid Approach
Interpreting Physical Sketches as Architectural Models
How Irregular Geometry and Industrial Process Come Together: A Case Study of the "Fondation Louis Vuitton Pour la Création", Paris
Ruled Free Forms
Multiple Nature - Taiwan Tower
Realizing Formal and Functional Complexity for Structurally Dynamic Systems in Rapid Computational Means: Computational Methodology based on Particle Systems for Complex Tension-Active Form Generation
Advances in Architectural Geometry, AAG 2012, Paris, France, September 27-28, 2012
Architectural Geometry from Research to Practice: The Eiffel Tower Pavilions
Geometric methods and computational mechanics for the design of stone domes based on Abeille's bond
Proceedings of the 3rd International Workshop on Explainability of Real-time Systems and their Analysis at the IEEE Real-Time Systems Symposium, York, UK, December 10, 2024
Towards Explainable Compositional Reasoning
Strengthening Real-Time Analysis by Evolving Counterexamples
Sound WCET Analysis, Explanation of the Method and of the Results
A formal model to handle the adaptability of multimodal user interfaces
Active manipulation of users in haptic-enabled virtual environments
Mobile Widget Technology as a Solution for Smart User Interaction
Future User Centric Media: Research Challenges and the Road Ahead
Assisting elders via dynamic multi-tasks planning: a Markov decision processes based approach
Energy aware and cluster-based routing protocols for large-scale ambient sensor networks
Game Design for Pre-screening Patients with Mental Health Complications Using ICT Tools
A Physical Basis for Ambient Intelligence - The Convergence of Biology, Polymers and Electronics Enabling New Design Approaches to Assistive Living
Devices and Wireless Interface Control in Vehicular Communications: An Autonomous Approach
Multimedia Chair Design for Improving the Experience of Hospital Stay for Children with Cancer: The Escape
Detecting abnormal activities in video sequences
A quality of experience model for haptic user interfaces
Implication of multimodality in ambient interfaces
Managing Children's Asthma with a Low Cost Web-Enabled Multifunctional Device