Error upgrading to atlassian-confluence-6.10.0-x64 from 6.0.2
Asked by Paul Aviles:

I performed the upgrade which went without any issues and now confluence does not start.

Already tried removing the web.xml and confluence/WEB-INF/web.xml, but does not work.

Any help will be appreciated. Environment is CentOS Linux release 7.5.1804

Getting the following errors:

18-Jul-2018 00:49:37.936 SEVERE \[localhost-startStop-1\] org.apache.catalina.core.StandardContext.startInternal One or more Filters failed to start. Full details will be found in the appropriate container log file  
18-Jul-2018 00:49:37.936 SEVERE \[localhost-startStop-1\] org.apache.catalina.core.StandardContext.startInternal Context \[\] startup failed due to previous errors  
WARNING: Cannot update an inactive framework.  
18-Jul-2018 00:50:14.177 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[org.h2.Driver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[org.hsqldb.jdbc.JDBCDriver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[net.sourceforge.jtds.jdbc.Driver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[com.github.gquintana.metrics.sql.Driver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[com.microsoft.sqlserver.jdbc.SQLServerDriver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[org.postgresql.Driver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.178 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application \[ROOT\] registered the JDBC driver \[org.mariadb.jdbc.Driver\] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.  
18-Jul-2018 00:50:14.181 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-1\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.181 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-2\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.182 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-3\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.183 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-4\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.183 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-5\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.184 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-6\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.184 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-7\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.185 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-8\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.185 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-9\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.186 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[scheduler_Worker-10\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Object.wait(Native Method)  
org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:543)  
18-Jul-2018 00:50:14.187 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[diagnostics-http-thread\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
java.lang.Thread.sleep(Native Method)  
java.lang.Thread.sleep(Thread.java:340)  
java.util.concurrent.TimeUnit.sleep(TimeUnit.java:386)  
com.atlassian.confluence.internal.diagnostics.HttpRequestMonitor.lambda$startMonitorThread$0(HttpRequestMonitor.java:97)  
com.atlassian.confluence.internal.diagnostics.HttpRequestMonitor$$Lambda$350/1892110009.run(Unknown Source)  
java.lang.Thread.run(Thread.java:748)  
18-Jul-2018 00:50:14.187 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[AtlassianEvent::CustomizableThreadFactory-1\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
sun.misc.Unsafe.park(Native Method)  
java.util.concurrent.locks.LockSupport.park(LockSupport.java:175)  
java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2039)  
java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)  
java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1074)  
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1134)  
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)  
java.lang.Thread.run(Thread.java:748)  
18-Jul-2018 00:50:14.188 WARNING \[localhost-startStop-1\] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application \[ROOT\] appears to have started a thread named \[AtlassianEvent::CustomizableThreadFactory-2\] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:  
sun.misc.Unsafe.park(Native Method)  
java.util.concurrent.locks.LockSupport.park(LockSupport.java:175)  
java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2039)  
java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442)  
java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1074)  
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1134)  
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)  
java.lang.Thread.run(Thread.java:748)  
18-Jul-2018 00:50:14.208 INFO \[main\] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler \["http-nio-8090"\]  
18-Jul-2018 00:50:14.224 INFO \[main\] org.apache.catalina.startup.Catalina.start Server startup in 219060 ms


Answers:
author: Shannon S
body: Hi there,

Where is this log from, catalina.out?

Can you please also check your [Confluence log](https://confluence.atlassian.com/doc/working-with-confluence-logs-108364721.html) and see if there's an error there related to the issue? Please feel free to send any error messages you see that might cause Confluence not to start up.

Shannon

comments: author: Paul Aviles
body: Hi Shannon, it is catalina.out. I don't see any relevant errors. Reinstalling 6.0.2 works so not sure what the issue could be.


author: Shannon S
body: Hi Paul,

Just to confirm, I was suggesting to check the atlassian-confluence.log instead of catalina.out.

Can you confirm after looking at the atlassian-confluence.log what messages you see? You can attempt restarting Confluence and let us know what errors occur there when it fails.

Thank you!

Shannon