ymoslem/acl-abstracts huggingface dataset:
Editing OntoLex-Lemon in VocBench 3 (2020)

OntoLex-Lemon is a collection of RDF vocabularies for specifying the verbalization of ontologies in natural language. Beyond its original scope, OntoLex-Lemon, as well as its predecessor Monnet lemon, found application in the Linguistic Linked Open Data cloud to represent and interlink language resources on the Semantic Web. Unfortunately, generic ontology and RDF editors were considered inconvenient to use with OntoLex-Lemon because of its complex design patterns and other peculiarities, including indirection, reification and subtle integrity constraints. This perception led to the development of dedicated editors, trading the flexibility of RDF in combining different models (and the features already available in existing RDF editors) for a more direct and streamlined editing of OntoLex-Lemon patterns. In this paper, we investigate on the benefits gained by extending an already existing RDF editor, VocBench 3, with capabilities closely tailored to OntoLex-Lemon and on the challenges that such extension implies. The outcome of such investigation is twofold: a vertical assessment of a new editor for OntoLex-Lemon and, in the broader scope of RDF editor design, a new perspective on which flexibility and extensibility characteristics an editor should meet in order to cover new core modeling vocabularies, for which OntoLex-Lemon represents a use case.
MALT-IT2: A New Resource to Measure Text Difficulty in Light of CEFR Levels for Italian L2 Learning (2020)

This paper presents a new resource for automatically assessing text difficulty in the context of Italian as a second or foreign language learning and teaching. It is called MALT-IT2, and it automatically classifies inputted texts according to the CEFR level they are more likely to belong to. After an introduction to the field of automatic text difficulty assessment, and an overview of previous related work, we describe the rationale of the project, the corpus and computational system it is based on. Experiments were conducted in order to investigate the reliability of the system. The results show that the system is able to obtain a good prediction accuracy, while a further analysis was conducted in order to identify the categories of features which mostly influenced the predictions.
Fintan - Flexible, Integrated Transformation and Annotation eNgineering (2020)

We introduce the Flexible and Integrated Transformation and Annotation eNgeneering (Fintan) platform for converting heterogeneous linguistic resources to RDF. With its modular architecture, workflow management and visualization features, Fintan facilitates the development of complex transformation pipelines by integrating generic RDF converters and augmenting them with extended graph processing capabilities: Existing converters can be easily deployed to the system by means of an ontological data structure which renders their properties and the dependencies between transformation steps. Development of subsequent graph transformation steps for resource transformation, annotation engineering or entity linking is further facilitated by a novel visual rendering of SPARQL queries. A graphical workflow manager allows to easily manage the converter modules and combine them to new transformation pipelines. Employing the stream-based graph processing approach first implemented with CoNLL-RDF, we address common challenges and scalability issues when transforming resources and showcase the performance of Fintan by means of a purely graph-based transformation of the Universal Morphology data to RDF.
Contemplata, a Free Platform for Constituency Treebank Annotation (2020)

This paper describes Contemplata, an annotation platform that offers a generic solution for treebank building as well as treebank enrichment with relations between syntactic nodes. Contemplata is dedicated to the annotation of constituency trees. The framework includes support for syntactic parsers, which provide automatic annotations to be manually revised. The balanced strategy of annotation between automatic parsing and manual revision allows to reduce the annotator workload, which favours data reliability. The paper presents the software architecture of Contemplata, describes its practical use and eventually gives two examples of annotation projects that were conducted on the platform.
Interchange Formats for Visualization: LIF and MMIF (2020)

Promoting interoperrable computational linguistics (CL) and natural language processing (NLP) application platforms and interchange-able data formats have contributed improving discoverabilty and accessbility of the openly available NLP software. In this paper, wediscuss the enhanced data visualization capabilities that are also enabled by inter-operating NLP pipelines and interchange formats. For adding openly available visualization tools and graphical annotation tools to the Language Applications Grid (LAPPS Grid) andComputational Linguistics Applications for Multimedia Services (CLAMS) toolboxes, we have developed interchange formats that cancarry annotations and metadata for text and audiovisual source data. We descibe those data formats and present case studies where wesuccessfully adopt open-source visualization tools and combine them with CL tools.
Developing NLP Tools with a New Corpus of Learner Spanish (2020)

The development of effective NLP tools for the L2 classroom depends largely on the availability of large annotated corpora of language learner text. While annotated learner corpora of English are widely available, large learner corpora of Spanish are less common. Those Spanish corpora that are available do not contain the annotations needed to facilitate the development of tools beneficial to language learners, such as grammatical error correction. As a result, the field has seen little research in NLP tools designed to benefit Spanish language learners and teachers. We introduce COWS-L2H, a freely available corpus of Spanish learner data which includes error annotations and parallel corrected text to help researchers better understand L2 development, to examine teaching practices empirically, and to develop NLP tools to better serve the Spanish teaching community. We demonstrate the utility of this corpus by developing a neural-network based grammatical error correction system for Spanish learner writing.
DeepNLPF: A Framework for Integrating Third Party NLP Tools (2020)

Natural Language Processing (NLP) of textual data is usually broken down into a sequence of several subtasks, where the output of one the subtasks becomes the input to the following one, which constitutes an NLP pipeline. Many third-party NLP tools are currently available, each performing distinct NLP subtasks. However, it is difficult to integrate several NLP toolkits into a pipeline due to many problems, including different input/output representations or formats, distinct programming languages, and tokenization issues. This paper presents DeepNLPF, a framework that enables easy integration of third-party NLP tools, allowing the user to preprocess natural language texts at lexical, syntactic, and semantic levels. The proposed framework also provides an API for complete pipeline customization including the definition of input/output formats, integration plugin management, transparent ultiprocessing execution strategies, corpus-level statistics, and database persistence. Furthermore, the DeepNLPF user-friendly GUI allows its use even by a non-expert NLP user. We conducted runtime performance analysis showing that DeepNLPF not only easily integrates existent NLP toolkits but also reduces significant runtime processing compared to executing the same NLP pipeline in a sequential manner.
Store Scientific Workflows Data in SSHOC Repository (2020)

Today scientific workflows are used by scientists as a way to define automated, scalable, and portable in-silico experiments. Having a formal description of an experiment can improve replicability and reproducibility of the experiment. However, simply storing and publishing the workflow may be not enough, an accurate management of provenance data generated during workflow life cycle is crucial to achieve reproducibility. This document presents the activity being carried out by CNR-ISTI in task 5.2 of the SSHOC project to add to the repository service developed in the task, functionalities to store, access and manage {\textquoteleft}workflow data' in order to improve replicability and reproducibility of e-science experiments.
Social Sciences and Humanities Pathway Towards the European Open Science Cloud (2020)

The paper presents a journey, which starts from various social sciences and humanities (SSH) Research Infrastructures in Europe and arrives at the comprehensive {\textquotedblleft}ecosystem of infrastructures{\textquotedblright}, namely the European Open Science Cloud (EOSC). We will highlight how the SSH Open Science infrastructures contribute to the goal of establishing the EOSC. First, through the example of OPERAS, the European Research Infrastructure for Open Scholarly Communication in the SSH, to see how its services are conceived to be part of the EOSC and to address the communities' needs. The next two sections highlight collaboration practices between partners in Europe to build the SSH component of the EOSC and a SSH discovery platform, as a service of OPERAS and the EOSC. The last two sections will focus on an implementation network dedicated to SSH data fairification.
From the attic to the cloud: mobilization of endangered language resources with linked data (2020)

This paper describes a collection of 20k ELAN annotation files harvested from five different endangered language archives. The ELAN files form a very heterogeneous set, but the hierarchical configuration of their tiers allow, in conjunction with the tier content, to identify transcriptions, translations, and glosses. These transcriptions, translations, and glosses are queryable across archives. Small analyses of graphemes (transcription tier), grammatical and lexical glosses (gloss tier), and semantic concepts (translation tier) show the viability of the approach. The use of identifiers from OLAC, Wikidata and Glottolog allows for a better integration of the data from these archives into the Linguistic Linked Open Data Cloud.
Verbal Aggression as an Indicator of Xenophobic Attitudes in Greek Twitter during and after the Financial Crisis (2020)

We present a replication of a data-driven and linguistically inspired Verbal Aggression analysis framework that was designed to examine Twitter verbal attacks against predefined target groups of interest as an indicator of xenophobic attitudes during the financial crisis in Greece, in particular during the period 2013-2016. The research goal in this paper is to re-examine Verbal Aggression as an indicator of xenophobic attitudes in Greek Twitter three years later, in order to trace possible changes regarding the main targets, the types and the content of the verbal attacks against the same targets in the post crisis era, given also the ongoing refugee crisis and the political landscape in Greece as it was shaped after the elections in 2019. The results indicate an interesting rearrangement of the main targets of the verbal attacks, while the content and the types of the attacks provide valuable insights about the way these targets are being framed as compared to the respective dominant perceptions and stereotypes about them during the period 2013-2016.
Mining Wages in Nineteenth-Century Job Advertisements. The Application of Language Resources and Language Technology to study Economic and Social Inequality (2020)

For the analysis of historical wage development, no structured data is available. Job advertisements, as found in newspapers can provide insights into what different types of jobs paid, but require language technology to structure in a format conducive to quantitative analysis. In this paper, we report on our experiments to mine wages from 19th century newspaper advertisements and detail the challenges that need to be overcome to perform a socio-economic analysis of textual data sources.
LR4SSHOC: The Future of Language Resources in the Context of the Social Sciences and Humanities Open Cloud (2020)

This paper outlines the future of language resources and identifies their potential contribution for creating and sustaining the social sciences and humanities (SSH) component of the European Open Science Cloud (EOSC).
EOSC as a game-changer in the Social Sciences and Humanities research activities (2020)

This paper aims to give some insights on how the European Open Science Cloud (EOSC) will be able to influence the Social Sciences and Humanities (SSH) sector, thus paving the way towards innovation. Points of discussion on how the LRs and RIs community can contribute to the revolution in the practice of research areas are provided.
Stretching Disciplinary Boundaries in Language Resource Development and Use: a Linguistic Data Consortium Position Paper (2020)

Given the persistent gap between demand and supply, the impetus to reuse language resources is great. Researchers benefit from building upon the work of others including reusing data, tools and methodology. Such reuse should always consider the original intent of the language resource and how that impacts potential reanalysis. When the reuse crosses disciplinary boundaries, the re-user also needs to consider how research standards that differ between social science and humanities on the one hand and human language technologies on the other might lead to differences in unspoken assumptions. Data centers that aim to support multiple research communities have a responsibility to build bridges across disciplinary divides by sharing data in all directions, encouraging re-use and re-sharing and engaging directly in research that improves methodologies.
Crossing the SSH Bridge with Interview Data (2020)

Spoken audio data, such as interview data, is a scientific instrument used by researchers in various disciplines crossing the boundaries of social sciences and humanities. In this paper, we will have a closer look at a portal designed to perform speech-to-text conversion on audio recordings through Automatic Speech Recognition (ASR) in the CLARIN infrastructure. Within the cluster cross-domain EU project SSHOC the potential value of such a linguistic tool kit for processing spoken language recording has found uptake in a webinar about the topic, and in a task addressing audio analysis of panel survey data. The objective of this contribution is to show that the processing of interviews as a research instrument has opened up a fascinating and fruitful area of collaboration between Social Sciences and Humanities (SSH).
The Impact of De-identification on Downstream Named Entity Recognition in Clinical Text (2020)

The impact of de-identification on data quality and, in particular, utility for developing models for downstream tasks has been more thoroughly studied for structured data than for unstructured text. While previous studies indicate that text de-identification has a limited impact on models for downstream tasks, it remains unclear what the impact is with various levels and forms of de-identification, in particular concerning the trade-off between precision and recall. In this paper, the impact of de-identification is studied on downstream named entity recognition in Swedish clinical text. The results indicate that de-identification models with moderate to high precision lead to similar downstream performance, while low precision has a substantial negative impact. Furthermore, different strategies for concealing sensitive information affect performance to different degrees, ranging from pseudonymisation having a low impact to the removal of entire sentences with sensitive information having a high impact. This study indicates that it is possible to increase the recall of models for identifying sensitive information without negatively affecting the use of de-identified text data for training models for clinical named entity recognition; however, there is ultimately a trade-off between the level of de-identification and the subsequent utility of the data.
Simple Hierarchical Multi-Task Neural End-To-End Entity Linking for Biomedical Text (2020)

Recognising and linking entities is a crucial first step to many tasks in biomedical text analysis, such as relation extraction and target identification. Traditionally, biomedical entity linking methods rely heavily on heuristic rules and predefined, often domain-specific features. The features try to capture the properties of entities and complex multi-step architectures to detect, and subsequently link entity mentions. We propose a significant simplification to the biomedical entity linking setup that does not rely on any heuristic methods. The system performs all the steps of the entity linking task jointly in either single or two stages. We explore the use of hierarchical multi-task learning, using mention recognition and entity typing tasks as auxiliary tasks. We show that hierarchical multi-task models consistently outperform single-task models when trained tasks are homogeneous. We evaluate the performance of our models on the biomedical entity linking benchmarks using MedMentions and BC5CDR datasets. We achieve state-of-theart results on the challenging MedMentions dataset, and comparable results on BC5CDR.
Medical Concept Normalization in User-Generated Texts by Learning Target Concept Embeddings (2020)

Medical concept normalization helps in discovering standard concepts in free-form text i.e., maps health-related mentions to standard concepts in a clinical knowledge base. It is much beyond simple string matching and requires a deep semantic understanding of concept mentions. Recent research approach concept normalization as either text classification or text similarity. The main drawback in existing a) text classification approach is ignoring valuable target concepts information in learning input concept mention representation b) text similarity approach is the need to separately generate target concept embeddings which is time and resource consuming. Our proposed model overcomes these drawbacks by jointly learning the representations of input concept mention and target concepts. First, we learn input concept mention representation using RoBERTa. Second, we find cosine similarity between embeddings of input concept mention and all the target concepts. Here, embeddings of target concepts are randomly initialized and then updated during training. Finally, the target concept with maximum cosine similarity is assigned to the input concept mention. Our model surpasses all the existing methods across three standard datasets by improving accuracy up to 2.31{\%}.
Not a cute stroke: Analysis of Rule- and Neural Network-based Information Extraction Systems for Brain Radiology Reports (2020)

We present an in-depth comparison of three clinical information extraction (IE) systems designed to perform entity recognition and negation detection on brain imaging reports: EdIE-R, a bespoke rule-based system, and two neural network models, EdIE-BiLSTM and EdIE-BERT, both multi-task learning models with a BiLSTM and BERT encoder respectively. We compare our models both on an in-sample and an out-of-sample dataset containing mentions of stroke findings and draw on our error analysis to suggest improvements for effective annotation when building clinical NLP models for a new domain. Our analysis finds that our rule-based system outperforms the neural models on both datasets and seems to generalise to the out-of-sample dataset. On the other hand, the neural models do not generalise negation to the out-of-sample dataset, despite metrics on the in-sample dataset suggesting otherwise.
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines (2020)

The lack of publicly accessible text corpora is a major obstacle for progress in natural language processing. For medical applications, unfortunately, all language communities other than English are low-resourced. In this work, we present GGPONC (German Guideline Program in Oncology NLP Corpus), a freely dis tributable German language corpus based on clinical practice guidelines for oncology. This corpus is one of the largest ever built from German medical documents. Unlike clinical documents, clinical guidelines do not contain any patient-related information and can therefore be used without data protection restrictions. Moreover, GGPONC is the first corpus for the German language covering diverse conditions in a large medical subfield and provides a variety of metadata, such as literature references and evidence levels. By applying and evaluating existing medical information extraction pipelines for German text, we are able to draw comparisons for the use of medical language to other corpora, medical and non-medical ones.
Normalization of Long-tail Adverse Drug Reactions in Social Media (2020)

The automatic mapping of Adverse Drug Reaction (ADR) reports from user-generated content to concepts in a controlled medical vocabulary provides valuable insights for monitoring public health. While state-of-the-art deep learning-based sequence classification techniques achieve impressive performance for medical concepts with large amounts of training data, they show their limit with long-tail concepts that have a low number of training samples. The above hinders their adaptability to the changes of layman`s terminology and the constant emergence of new informal medical terms. Our objective in this paper is to tackle the problem of normalizing long-tail ADR mentions in user-generated content. In this paper, we exploit the implicit semantics of rare ADRs for which we have few training samples, in order to detect the most similar class for the given ADR. The evaluation results demonstrate that our proposed approach addresses the limitations of the existing techniques when the amount of training data is limited.
Evaluation of Machine Translation Methods applied to Medical Terminologies (2020)

Medical terminologies resources and standards play vital roles in clinical data exchanges, enabling significantly the services' interoperability within healthcare national information networks. Health and medical science are constantly evolving causing requirements to advance the terminologies editions. In this paper, we present our evaluation work of the latest machine translation techniques addressing medical terminologies. Experiments have been conducted leveraging selected statistical and neural machine translation methods. The devised procedure is tested on a validated sample of ICD-11 and ICF terminologies from English to French with promising results.
Information retrieval for animal disease surveillance: a pattern-based approach. (2020)

Animal diseases-related news articles are richin information useful for risk assessment. In this paper, we explore a method to automatically retrieve sentence-level epidemiological information. Our method is an incremental approach to create and expand patterns at both lexical and syntactic levels. Expert knowledge input are used at different steps of the approach. Distributed vector representations (word embedding) were used to expand the patterns at the lexical level, thus alleviating manual curation. We showed that expert validation was crucial to improve the precision of automatically generated patterns.