ymoslem/acl-abstracts huggingface dataset:
Proposed Method for Annotation of Scientific Arguments in Terms of Semantic Relations and Argument Schemes (2018)

This paper presents a proposed method for annotation of scientific arguments in biological/biomedical journal articles. Semantic entities and relations are used to represent the propositional content of arguments in instances of argument schemes. We describe an experiment in which we encoded the arguments in a journal article to identify issues in this approach. Our catalogue of argument schemes and a copy of the annotated article are now publically available.
Using context to identify the language of face-saving (2018)

We created a corpus of utterances that attempt to save face from parliamentary debates and use it to automatically analyze the language of reputation defence. Our proposed model that incorporates information regarding threats to reputation can predict reputation defence language with high confidence. Further experiments and evaluations on different datasets show that the model is able to generalize to new utterances and can predict the language of reputation defence in a new dataset.
Dave the debater: a retrieval-based and generative argumentative dialogue agent (2018)

In this paper, we explore the problem of developing an argumentative dialogue agent that can be able to discuss with human users on controversial topics. We describe two systems that use retrieval-based and generative models to make argumentative responses to the users. The experiments show promising results although they have been trained on a small dataset.
PD3: Better Low-Resource Cross-Lingual Transfer By Combining Direct Transfer and Annotation Projection (2018)

We consider unsupervised cross-lingual transfer on two tasks, viz., sentence-level argumentation mining and standard POS tagging. We combine direct transfer using bilingual embeddings with annotation projection, which projects labels across unlabeled parallel data. We do so by either merging respective source and target language datasets or alternatively by using multi-task learning. Our combination strategy considerably improves upon both direct transfer and projection with few available parallel sentences, the most realistic scenario for many low-resource target languages.
Cross-Lingual Argumentative Relation Identification: from English to Portuguese (2018)

Argument mining aims to detect and identify argument structures from textual resources. In this paper, we aim to address the task of argumentative relation identification, a subtask of argument mining, for which several approaches have been recently proposed in a monolingual setting. To overcome the lack of annotated resources in less-resourced languages, we present the first attempt to address this subtask in a cross-lingual setting. We compare two standard strategies for cross-language learning, namely: projection and direct-transfer. Experimental results show that by using unsupervised language adaptation the proposed approaches perform at a competitive level when compared with fully-supervised in-language learning settings.
More or less controlled elicitation of argumentative text: Enlarging a microtext corpus via crowdsourcing (2018)

We present an extension of an annotated corpus of short argumentative texts that had originally been built in a controlled text production experiment. Our extension more than doubles the size of the corpus by means of crowdsourcing. We report on the setup of this experiment and on the consequences that crowdsourcing had for assembling the data, and in particular for annotation. We labeled the argumentative structure by marking claims, premises, and relations between them, following the scheme used in the original corpus, but had to make a few modifications in response to interesting phenomena in the data. Finally, we report on an experiment with the automatic prediction of this argumentation structure: We first replicated the approach of an earlier study on the original corpus, and compare the performance to various settings involving the extension.
Results of the sixth edition of the BioASQ Challenge (2018)

This paper presents the results of the sixth edition of the BioASQ challenge. The BioASQ challenge aims at the promotion of systems and methodologies through the organization of a challenge on two tasks: semantic indexing and question answering. In total, 26 teams with more than 90 systems participated in this year`s challenge. As in previous years, the best systems were able to outperform the strong baselines. This suggests that state-of-the-art systems are continuously improving, pushing the frontier of research.
Semantic role labeling tools for biomedical question answering: a study of selected tools on the BioASQ datasets (2018)

Question answering (QA) systems usually rely on advanced natural language processing components to precisely understand the questions and extract the answers. Semantic role labeling (SRL) is known to boost performance for QA, but its use for biomedical texts has not yet been fully studied. We analyzed the performance of three SRL tools (BioKIT, BIOSMILE and PathLSTM) on 1776 questions from the BioASQ challenge. We compared the systems regarding the coverage of the questions and snippets, as well as based on pre-defined criteria, such as easiness of installation, supported formats and usability. Finally, we integrated two of the tools in a simple QA system to further evaluate their performance over the official BioASQ test sets.
Macquarie University at BioASQ 6b: Deep learning and deep reinforcement learning for query-based summarisation (2018)

This paper describes Macquarie University`s contribution to the BioASQ Challenge (BioASQ 6b, Phase B). We focused on the extraction of the ideal answers, and the task was approached as an instance of query-based multi-document summarisation. In particular, this paper focuses on the experiments related to the deep learning and reinforcement learning approaches used in the submitted runs. The best run used a deep learning model under a regression-based framework. The deep learning architecture used features derived from the output of LSTM chains on word embeddings, plus features based on similarity with the query, and sentence position. The reinforcement learning approach was a proof-of-concept prototype that trained a global policy using REINFORCE. The global policy was implemented as a neural network that used tf.idf features encoding the candidate sentence, question, and context.
AUEB at BioASQ 6: Document and Snippet Retrieval (2018)

We present AUEB`s submissions to the BioASQ 6 document and snippet retrieval tasks (parts of Task 6b, Phase A). Our models use novel extensions to deep learning architectures that operate solely over the text of the query and candidate document/snippets. Our systems scored at the top or near the top for all batches of the challenge, highlighting the effectiveness of deep learning for these tasks.
MindLab Neural Network Approach at BioASQ 6B (2018)

Biomedical Question Answering is concerned with the development of methods and systems that automatically find answers to natural language posed questions. In this work, we describe the system used in the BioASQ Challenge task 6b for document retrieval and snippet retrieval (with particular emphasis in this subtask). The proposed model makes use of semantic similarity patterns that are evaluated and measured by a convolutional neural network architecture. Subsequently, the snippet ranking performance is improved with a pseudo-relevance feedback approach in a later step. Based on the preliminary results, we reached the second position in snippet retrieval sub-task.
AttentionMeSH: Simple, Effective and Interpretable Automatic MeSH Indexer (2018)

There are millions of articles in PubMed database. To facilitate information retrieval, curators in the National Library of Medicine (NLM) assign a set of Medical Subject Headings (MeSH) to each article. MeSH is a hierarchically-organized vocabulary, containing about 28K different concepts, covering the fields from clinical medicine to information sciences. Several automatic MeSH indexing models have been developed to improve the time-consuming and financially expensive manual annotation, including the NLM official tool {--} Medical Text Indexer, and the winner of BioASQ Task5a challenge {--} DeepMeSH. However, these models are complex and not interpretable. We propose a novel end-to-end model, AttentionMeSH, which utilizes deep learning and attention mechanism to index MeSH terms to biomedical text. The attention mechanism enables the model to associate textual evidence with annotations, thus providing interpretability at the word level. The model also uses a novel masking mechanism to enhance accuracy and speed. In the final week of BioASQ Chanllenge Task6a, we ranked 2nd by average MiF using an on-construction model. After the contest, we achieve close to state-of-the-art MiF performance of {\ensuremath{\sim}} 0.684 using our final model. Human evaluations show AttentionMeSH also provides high level of interpretability, retrieving about 90{\%} of all expert-labeled relevant words given an MeSH-article pair at 20 output.
Extraction Meets Abstraction: Ideal Answer Generation for Biomedical Questions (2018)

The growing number of biomedical publications is a challenge for human researchers, who invest considerable effort to search for relevant documents and pinpointed answers. Biomedical Question Answering can automatically generate answers for a user`s topic or question, significantly reducing the effort required to locate the most relevant information in a large document corpus. Extractive summarization techniques, which concatenate the most relevant text units drawn from multiple documents, perform well on automatic evaluation metrics like ROUGE, but score poorly on human readability, due to the presence of redundant text and grammatical errors in the answer. This work moves toward abstractive summarization, which attempts to distill and present the meaning of the original text in a more coherent way. We incorporate a sentence fusion approach, based on Integer Linear Programming, along with three novel approaches for sentence ordering, in an attempt to improve the human readability of ideal answers. Using an open framework for configuration space exploration (BOOM), we tested over 2000 unique system configurations in order to identify the best-performing combinations for the sixth edition of Phase B of the BioASQ challenge.
UNCC QA: Biomedical Question Answering system (2018)

In this paper, we detail our submission to the BioASQ competition`s Biomedical Semantic Question and Answering task. Our system uses extractive summarization techniques to generate answers and has scored highest ROUGE-2 and Rogue-SU4 in all test batch sets. Our contributions are named-entity based method for answering factoid and list questions, and an extractive summarization techniques for building paragraph-sized summaries, based on lexical chains. Our system got highest ROUGE-2 and ROUGE-SU4 scores for ideal-type answers in all test batch sets. We also discuss the limitations of the described system, such lack of the evaluation on other criteria (e.g. manual). Also, for factoid- and list -type question our system got low accuracy (which suggests that our algorithm needs to improve in the ranking of entities).
An Adaption of BIOASQ Question Answering dataset for Machine Reading systems by Manual Annotations of Answer Spans. (2018)

BIOASQ Task B Phase B challenge focuses on extracting answers from snippets for a given question. The dataset provided by the organizers contains answers, but not all their variants. Henceforth a manual annotation was performed to extract all forms of correct answers. This article shows the impact of using all occurrences of correct answers for training on the evaluation scores which are improved significantly.
Ontology-Based Retrieval \& Neural Approaches for BioASQ Ideal Answer Generation (2018)

The ever-increasing magnitude of biomedical information sources makes it difficult and time-consuming for a human researcher to find the most relevant documents and pinpointed answers for a specific question or topic when using only a traditional search engine. Biomedical Question Answering systems automatically identify the most relevant documents and pinpointed answers, given an information need expressed as a natural language question. Generating a non-redundant, human-readable summary that satisfies the information need of a given biomedical question is the focus of the Ideal Answer Generation task, part of the BioASQ challenge. This paper presents a system for ideal answer generation (using ontology-based retrieval and a neural learning-to-rank approach, combined with extractive and abstractive summarization techniques) which achieved the highest ROUGE score of 0.659 on the BioASQ 5b batch 2 test.
When does deep multi-task learning work for loosely related document classification tasks? (2018)

This work aims to contribute to our understanding of \textit{when} multi-task learning through parameter sharing in deep neural networks leads to improvements over single-task learning. We focus on the setting of learning from \textit{loosely related} tasks, for which no theoretical guarantees exist. We therefore approach the question empirically, studying which properties of datasets and single-task learning characteristics correlate with improvements from multi-task learning. We are the first to study this in a text classification setting and across more than 500 different task pairs.
Analyzing Learned Representations of a Deep ASR Performance Prediction Model (2018)

This paper addresses a relatively new task: prediction of ASR performance on unseen broadcast programs. In a previous paper, we presented an ASR performance prediction system using CNNs that encode both text (ASR transcript) and speech, in order to predict word error rate. This work is dedicated to the analysis of speech signal embeddings and text embeddings learnt by the CNN while training our prediction model. We try to better understand which information is captured by the deep model and its relation with different conditioning factors. It is shown that hidden layers convey a clear signal about speech style, accent and broadcast type. We then try to leverage these 3 types of information at training time through multi-task learning. Our experiments show that this allows to train slightly more efficient ASR performance prediction systems that - in addition - simultaneously tag the analyzed utterances according to their speech style, accent and broadcast program origin.
Explaining non-linear Classifier Decisions within Kernel-based Deep Architectures (2018)

Nonlinear methods such as deep neural networks achieve state-of-the-art performances in several semantic NLP tasks. However epistemologically transparent decisions are not provided as for the limited interpretability of the underlying acquired neural models. In neural-based semantic inference tasks epistemological transparency corresponds to the ability of tracing back causal connections between the linguistic properties of a input instance and the produced classification output. In this paper, we propose the use of a methodology, called \textit{Layerwise Relevance Propagation}, over linguistically motivated neural architectures, namely \textit{Kernel-based Deep Architectures} (KDA), to guide argumentations and explanation inferences. In such a way, each decision provided by a KDA can be linked to real examples, linguistically related to the input instance: these can be used to motivate the network output. Quantitative analysis shows that richer explanations about the semantic and syntagmatic structures of the examples characterize more convincing arguments in two tasks, i.e. question classification and semantic role labeling.
Nightmare at test time: How punctuation prevents parsers from generalizing (2018)

Punctuation is a strong indicator of syntactic structure, and parsers trained on text with punctuation often rely heavily on this signal. Punctuation is a diversion, however, since human language processing does not rely on punctuation to the same extent, and in informal texts, we therefore often leave out punctuation. We also use punctuation ungrammatically for emphatic or creative purposes, or simply by mistake. We show that (a) dependency parsers are sensitive to \textit{both} absence of punctuation and to alternative uses; (b) neural parsers tend to be more sensitive than vintage parsers; (c) training neural parsers \textit{without} punctuation outperforms all out-of-the-box parsers across all scenarios where punctuation departs from standard punctuation. Our main experiments are on synthetically corrupted data to study the effect of punctuation in isolation and avoid potential confounds, but we also show effects on out-of-domain data.
Evaluating Textual Representations through Image Generation (2018)

We present a methodology for determining the quality of textual representations through the ability to generate images from them. Continuous representations of textual input are ubiquitous in modern Natural Language Processing techniques either at the core of machine learning algorithms or as the by-product at any given layer of a neural network. While current techniques to evaluate such representations focus on their performance on particular tasks, they don`t provide a clear understanding of the level of informational detail that is stored within them, especially their ability to represent spatial information. The central premise of this paper is that visual inspection or analysis is the most convenient method to quickly and accurately determine information content. Through the use of text-to-image neural networks, we propose a new technique to compare the quality of textual representations by visualizing their information content. The method is illustrated on a medical dataset where the correct representation of spatial information and shorthands are of particular importance. For four different well-known textual representations, we show with a quantitative analysis that some representations are consistently able to deliver higher quality visualizations of the information content. Additionally, we show that the quantitative analysis technique correlates with the judgment of a human expert evaluator in terms of alignment.
On the Role of Text Preprocessing in Neural Network Architectures: An Evaluation Study on Text Categorization and Sentiment Analysis (2018)

Text preprocessing is often the first step in the pipeline of a Natural Language Processing (NLP) system, with potential impact in its final performance. Despite its importance, text preprocessing has not received much attention in the deep learning literature. In this paper we investigate the impact of simple text preprocessing decisions (particularly tokenizing, lemmatizing, lowercasing and multiword grouping) on the performance of a standard neural text classifier. We perform an extensive evaluation on standard benchmarks from text categorization and sentiment analysis. While our experiments show that a simple tokenization of input text is generally adequate, they also highlight significant degrees of variability across preprocessing techniques. This reveals the importance of paying attention to this usually-overlooked step in the pipeline, particularly when comparing different models. Finally, our evaluation provides insights into the best preprocessing practices for training word embeddings.
Jump to better conclusions: SCAN both left and right (2018)

Lake and Baroni (2018) recently introduced the SCAN data set, which consists of simple commands paired with action sequences and is intended to test the strong generalization abilities of recurrent sequence-to-sequence models. Their initial experiments suggested that such models may fail because they lack the ability to extract systematic rules. Here, we take a closer look at SCAN and show that it does not always capture the kind of generalization that it was designed for. To mitigate this we propose a complementary dataset, which requires mapping actions back to the original commands, called NACS. We show that models that do well on SCAN do not necessarily do well on NACS, and that NACS exhibits properties more closely aligned with realistic use-cases for sequence-to-sequence models.
Understanding Convolutional Neural Networks for Text Classification (2018)

We present an analysis into the inner workings of Convolutional Neural Networks (CNNs) for processing text. CNNs used for computer vision can be interpreted by projecting filters into image space, but for discrete sequence inputs CNNs remain a mystery. We aim to understand the method by which the networks process and classify text. We examine common hypotheses to this problem: that filters, accompanied by global max-pooling, serve as ngram detectors. We show that filters may capture several different semantic classes of ngrams by using different activation patterns, and that global max-pooling induces behavior which separates important ngrams from the rest. Finally, we show practical use cases derived from our findings in the form of model interpretability (explaining a trained model by deriving a concrete identity for each filter, bridging the gap between visualization tools in vision tasks and NLP) and prediction interpretability (explaining predictions).
Linguistic representations in multi-task neural networks for ellipsis resolution (2018)

Sluicing resolution is the task of identifying the antecedent to a question ellipsis. Antecedents are often sentential constituents, and previous work has therefore relied on syntactic parsing, together with complex linguistic features. A recent model instead used partial parsing as an auxiliary task in sequential neural network architectures to inject syntactic information. We explore the linguistic information being brought to bear by such networks, both by defining subsets of the data exhibiting relevant linguistic characteristics, and by examining the internal representations of the network. Both perspectives provide evidence for substantial linguistic knowledge being deployed by the neural networks.
Unsupervised Token-wise Alignment to Improve Interpretation of Encoder-Decoder Models (2018)

Developing a method for understanding the inner workings of black-box neural methods is an important research endeavor. Conventionally, many studies have used an attention matrix to interpret how Encoder-Decoder-based models translate a given source sentence to the corresponding target sentence. However, recent studies have empirically revealed that an attention matrix is not optimal for token-wise translation analyses. We propose a method that explicitly models the token-wise alignment between the source and target sequences to provide a better analysis. Experiments show that our method can acquire token-wise alignments that are superior to those of an attention mechanism.
Rule induction for global explanation of trained models (2018)

Understanding the behavior of a trained network and finding explanations for its outputs is important for improving the network`s performance and generalization ability, and for ensuring trust in automated systems. Several approaches have previously been proposed to identify and visualize the most important features by analyzing a trained network. However, the relations between different features and classes are lost in most cases. We propose a technique to induce sets of if-then-else rules that capture these relations to globally explain the predictions of a network. We first calculate the importance of the features in the trained network. We then weigh the original inputs with these feature importance scores, simplify the transformed input space, and finally fit a rule induction model to explain the model predictions. We find that the output rule-sets can explain the predictions of a neural network trained for 4-class text classification from the 20 newsgroups dataset to a macro-averaged F-score of 0.80. We make the code available at \url{https://github.com/clips/interpret_with_rules}.