user: 请将以下的汇编代码转换成C语言代码:

```asm
<main>:
  endbr64
  push   %rbp
  mov    %rsp,%rbp
  push   %r15
  push   %r14
  push   %r13
  push   %r12
  push   %rbx
  sub    $0x348,%rsp
  mov    %edi,-0x194(%rbp)
  mov    %rsi,-0x1a0(%rbp)
  mov    %fs:0x28,%rax
  mov    %rax,-0x38(%rbp)
  xor    %eax,%eax
  mov    %rsp,%rax
  mov    %rax,-0x368(%rbp)
  movl   $0x3e8,-0x16c(%rbp)
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x148(%rbp)
  movslq %edx,%rax
  mov    %rax,%rcx
  mov    $0x0,%ebx
  movslq %edx,%rax
  mov    %rax,%r8
  mov    $0x0,%r9d
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L583:
  cmp    %rcx,%rsp
  je     L651
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L583
L651:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L144
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L144:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x140(%rbp)
  mov    -0x1a0(%rbp),%rax
  add    $0x8,%rax
  mov    (%rax),%rdx
  mov    -0x140(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x138(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x1b0(%rbp)
  movq   $0x0,-0x1a8(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x220(%rbp)
  movq   $0x0,-0x218(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L100:
  cmp    %rcx,%rsp
  je     L532
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L100
L532:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L205
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L205:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x130(%rbp)
  mov    -0x1a0(%rbp),%rax
  add    $0x10,%rax
  mov    (%rax),%rdx
  mov    -0x130(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x128(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x230(%rbp)
  movq   $0x0,-0x228(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x240(%rbp)
  movq   $0x0,-0x238(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L143:
  cmp    %rcx,%rsp
  je     L460
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L143
L460:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L678
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L678:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x120(%rbp)
  mov    -0x1a0(%rbp),%rax
  add    $0x18,%rax
  mov    (%rax),%rdx
  mov    -0x120(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x118(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x250(%rbp)
  movq   $0x0,-0x248(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x260(%rbp)
  movq   $0x0,-0x258(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L368:
  cmp    %rcx,%rsp
  je     L505
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L368
L505:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L690
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L690:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x110(%rbp)
  mov    -0x120(%rbp),%rdx
  mov    -0x110(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0x110(%rbp),%rdx
  lea    D275(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x110(%rbp),%rdx
  lea    D233(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <fopen@plt>
  mov    %rax,-0x108(%rbp)
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x100(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x270(%rbp)
  movq   $0x0,-0x268(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x280(%rbp)
  movq   $0x0,-0x278(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L216:
  cmp    %rcx,%rsp
  je     L538
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L216
L538:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L715
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L715:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0xf8(%rbp)
  mov    -0x120(%rbp),%rdx
  mov    -0xf8(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D269(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x130(%rbp),%rdx
  mov    -0xf8(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D220(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x140(%rbp),%rdx
  mov    -0xf8(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D121(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x130(%rbp),%rdx
  mov    -0xf8(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D220(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x140(%rbp),%rdx
  mov    -0xf8(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D26(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0xf8(%rbp),%rdx
  lea    D113(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <fopen@plt>
  mov    %rax,-0xf0(%rbp)
  mov    -0xf0(%rbp),%rax
  mov    %rax,%rcx
  mov    $0x2a,%edx
  mov    $0x1,%esi
  lea    D99(%rip),%rax
  mov    %rax,%rdi
  call   <fwrite@plt>
  mov    -0x16c(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0xe8(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x290(%rbp)
  movq   $0x0,-0x288(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x2a0(%rbp)
  movq   $0x0,-0x298(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L136:
  cmp    %rcx,%rsp
  je     L229
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L136
L229:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L271
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L271:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0xe0(%rbp)
  mov    -0x120(%rbp),%rdx
  mov    -0xe0(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcpy@plt>
  mov    -0xe0(%rbp),%rdx
  lea    D269(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x130(%rbp),%rdx
  mov    -0xe0(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xe0(%rbp),%rdx
  lea    D220(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x140(%rbp),%rdx
  mov    -0xe0(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xe0(%rbp),%rdx
  lea    D121(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x130(%rbp),%rdx
  mov    -0xe0(%rbp),%rax
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <strcat@plt>
  mov    -0xe0(%rbp),%rdx
  lea    D220(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0xe0(%rbp),%rdx
  lea    D177(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x16c(%rbp),%ebx
  movslq %ebx,%rax
  sub    $0x1,%rax
  mov    %rax,-0xd8(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x2b0(%rbp)
  movq   $0x0,-0x2a8(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x2c0(%rbp)
  movq   $0x0,-0x2b8(%rbp)
  movslq %ebx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%esi
  mov    $0x0,%edx
  div    %rsi
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L168:
  cmp    %rcx,%rsp
  je     L604
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L168
L604:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L333
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L333:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0xd0(%rbp)
  movl   $0x0,-0x188(%rbp)
  mov    -0xe0(%rbp),%rdx
  lea    D267(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <fopen@plt>
  mov    %rax,-0xc8(%rbp)
  cmpq   $0x0,-0xc8(%rbp)
  je     L115
  jmp    L58
L666:
  addl   $0x1,-0x188(%rbp)
L58:
  mov    -0xc8(%rbp),%rax
  mov    -0xd0(%rbp),%rcx
  mov    %rax,%rdx
  mov    %ebx,%esi
  mov    %rcx,%rdi
  call   <fgets@plt>
  test   %rax,%rax
  jne    L666
  mov    -0xc8(%rbp),%rax
  mov    %rax,%rdi
  call   <fclose@plt>
  jmp    L695
L115:
  mov    -0xe0(%rbp),%rax
  mov    %rax,%rdi
  call   <perror@plt>
L695:
  mov    -0x16c(%rbp),%esi
  mov    -0x188(%rbp),%edi
  movslq %esi,%rax
  sub    $0x1,%rax
  mov    %rax,-0xc0(%rbp)
  movslq %esi,%rax
  mov    %rax,-0x2d0(%rbp)
  movq   $0x0,-0x2c8(%rbp)
  movslq %esi,%rax
  mov    %rax,-0x1b0(%rbp)
  movslq %edi,%rax
  sub    $0x1,%rax
  mov    %rax,-0xb8(%rbp)
  movslq %esi,%rax
  mov    %rax,%r14
  mov    $0x0,%r15d
  movslq %edi,%rax
  mov    %rax,%r12
  mov    $0x0,%r13d
  mov    %r15,%rdx
  imul   %r12,%rdx
  mov    %r13,%rax
  imul   %r14,%rax
  lea    (%rdx,%rax,1),%rcx
  mov    %r14,%rax
  mul    %r12
  add    %rdx,%rcx
  mov    %rcx,%rdx
  movslq %esi,%rax
  mov    %rax,-0x1c0(%rbp)
  movq   $0x0,-0x1b8(%rbp)
  movslq %edi,%rax
  mov    %rax,-0x1d0(%rbp)
  movq   $0x0,-0x1c8(%rbp)
  mov    -0x1c0(%rbp),%r11
  mov    -0x1b8(%rbp),%r12
  mov    %r12,%rdx
  mov    -0x1d0(%rbp),%r9
  mov    -0x1c8(%rbp),%r10
  imul   %r9,%rdx
  mov    %r10,%rax
  imul   %r11,%rax
  lea    (%rdx,%rax,1),%rcx
  mov    %r11,%rax
  mul    %r9
  add    %rdx,%rcx
  mov    %rcx,%rdx
  movslq %esi,%rdx
  movslq %edi,%rax
  imul   %rax,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%esi
  mov    $0x0,%edx
  div    %rsi
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L280:
  cmp    %rcx,%rsp
  je     L609
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L280
L609:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L603
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L603:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0xb0(%rbp)
  mov    -0x16c(%rbp),%esi
  mov    -0x188(%rbp),%edi
  movslq %esi,%rax
  sub    $0x1,%rax
  mov    %rax,-0xa8(%rbp)
  movslq %esi,%rax
  mov    %rax,-0x2e0(%rbp)
  movq   $0x0,-0x2d8(%rbp)
  movslq %esi,%r12
  movslq %edi,%rax
  sub    $0x1,%rax
  mov    %rax,-0xa0(%rbp)
  movslq %esi,%rax
  mov    %rax,-0x1e0(%rbp)
  movq   $0x0,-0x1d8(%rbp)
  movslq %edi,%rax
  mov    %rax,-0x1f0(%rbp)
  movq   $0x0,-0x1e8(%rbp)
  mov    -0x1e0(%rbp),%r10
  mov    -0x1d8(%rbp),%r11
  mov    %r11,%rdx
  mov    -0x1f0(%rbp),%r8
  mov    -0x1e8(%rbp),%r9
  imul   %r8,%rdx
  mov    %r9,%rax
  imul   %r10,%rax
  lea    (%rdx,%rax,1),%rcx
  mov    %r10,%rax
  mul    %r8
  add    %rdx,%rcx
  mov    %rcx,%rdx
  movslq %esi,%rax
  mov    %rax,-0x200(%rbp)
  movq   $0x0,-0x1f8(%rbp)
  movslq %edi,%rax
  mov    %rax,-0x210(%rbp)
  movq   $0x0,-0x208(%rbp)
  mov    -0x200(%rbp),%r8
  mov    -0x1f8(%rbp),%r9
  mov    %r9,%rdx
  mov    -0x210(%rbp),%r14
  mov    -0x208(%rbp),%r15
  imul   %r14,%rdx
  mov    %r15,%rax
  imul   %r8,%rax
  lea    (%rdx,%rax,1),%rcx
  mov    %r8,%rax
  mul    %r14
  add    %rdx,%rcx
  mov    %rcx,%rdx
  movslq %esi,%rdx
  movslq %edi,%rax
  imul   %rax,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%esi
  mov    $0x0,%edx
  div    %rsi
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L498:
  cmp    %rcx,%rsp
  je     L213
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L498
L213:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L110
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L110:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x98(%rbp)
  movl   $0x0,-0x188(%rbp)
  mov    -0xe0(%rbp),%rdx
  lea    D267(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <fopen@plt>
  mov    %rax,-0x90(%rbp)
  cmpq   $0x0,-0x90(%rbp)
  je     L223
  jmp    L117
L506:
  mov    -0xd0(%rbp),%rax
  mov    %rax,%rdi
  call   <strlen@plt>
  mov    %eax,-0x168(%rbp)
  mov    -0x168(%rbp),%eax
  sub    $0x1,%eax
  mov    -0xd0(%rbp),%rdx
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    $0xa,%al
  jne    L615
  mov    -0x168(%rbp),%eax
  sub    $0x1,%eax
  mov    -0xd0(%rbp),%rdx
  cltq
  movb   $0x0,(%rdx,%rax,1)
L615:
  mov    -0x188(%rbp),%eax
  cltq
  imul   -0x1b0(%rbp),%rax
  mov    %rax,%rdx
  mov    -0xb0(%rbp),%rax
  add    %rax,%rdx
  mov    -0xd0(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcpy@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  mov    -0x120(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcpy@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  lea    D269(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  mov    -0x130(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  lea    D220(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  mov    -0x140(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  lea    D121(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  mov    -0x130(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  lea    D45(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  mov    -0xd0(%rbp),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  mov    -0x188(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rax,%rdx
  lea    D172(%rip),%rax
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcat@plt>
  addl   $0x1,-0x188(%rbp)
L117:
  mov    -0x90(%rbp),%rax
  mov    -0xd0(%rbp),%rcx
  mov    %rax,%rdx
  mov    %ebx,%esi
  mov    %rcx,%rdi
  call   <fgets@plt>
  test   %rax,%rax
  jne    L506
  mov    -0x90(%rbp),%rax
  mov    %rax,%rdi
  call   <fclose@plt>
  jmp    L209
L223:
  mov    -0xe0(%rbp),%rax
  mov    %rax,%rdi
  call   <perror@plt>
L209:
  movl   $0xf4240,-0x164(%rbp)
  mov    -0x164(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x88(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x2f0(%rbp)
  movq   $0x0,-0x2e8(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x300(%rbp)
  movq   $0x0,-0x2f8(%rbp)
  movslq %edx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L672:
  cmp    %rcx,%rsp
  je     L653
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L672
L653:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L611
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L611:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x80(%rbp)
  mov    -0x164(%rbp),%edx
  movslq %edx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x78(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x310(%rbp)
  movq   $0x0,-0x308(%rbp)
  movslq %edx,%rax
  mov    %rax,-0x320(%rbp)
  movq   $0x0,-0x318(%rbp)
  movslq %edx,%rax
  mov    $0x10,%edx
  sub    $0x1,%rdx
  add    %rdx,%rax
  mov    $0x10,%ebx
  mov    $0x0,%edx
  div    %rbx
  imul   $0x10,%rax,%rax
  mov    %rax,%rcx
  and    $0xfffffffffffff000,%rcx
  mov    %rsp,%rdx
  sub    %rcx,%rdx
L577:
  cmp    %rdx,%rsp
  je     L323
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L577
L323:
  mov    %rax,%rdx
  and    $0xfff,%edx
  sub    %rdx,%rsp
  mov    %rax,%rdx
  and    $0xfff,%edx
  test   %rdx,%rdx
  je     L113
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L113:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x70(%rbp)
  movl   $0x0,-0x178(%rbp)
  movl   $0x0,-0x184(%rbp)
  jmp    L240
L267:
  mov    -0x184(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rdx,%rax
  lea    D267(%rip),%rdx
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <fopen@plt>
  mov    %rax,-0x68(%rbp)
  cmpq   $0x0,-0x68(%rbp)
  je     L466
  mov    %rsp,%rax
  mov    %rax,%r13
  mov    -0x164(%rbp),%ebx
  movslq %ebx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x60(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x330(%rbp)
  movq   $0x0,-0x328(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x340(%rbp)
  movq   $0x0,-0x338(%rbp)
  movslq %ebx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%esi
  mov    $0x0,%edx
  div    %rsi
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L305:
  cmp    %rcx,%rsp
  je     L214
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L305
L214:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L535
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L535:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x58(%rbp)
  jmp    L197
L683:
  mov    -0x58(%rbp),%rax
  movzbl (%rax),%eax
  cmp    $0x3e,%al
  je     L197
  mov    -0x58(%rbp),%rax
  mov    %rax,%rdi
  call   <strlen@plt>
  mov    %eax,-0x160(%rbp)
  subl   $0x1,-0x160(%rbp)
  mov    -0x58(%rbp),%rdx
  mov    -0x160(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    $0xa,%al
  jne    L275
  mov    -0x58(%rbp),%rdx
  mov    -0x160(%rbp),%eax
  cltq
  movb   $0x0,(%rdx,%rax,1)
L275:
  mov    -0x58(%rbp),%rax
  mov    -0x80(%rbp),%rdx
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcpy@plt>
  mov    -0x68(%rbp),%rax
  mov    %rax,%rdi
  call   <fclose@plt>
L197:
  mov    -0x68(%rbp),%rax
  mov    -0x58(%rbp),%rcx
  mov    %rax,%rdx
  mov    %ebx,%esi
  mov    %rcx,%rdi
  call   <fgets@plt>
  test   %rax,%rax
  jne    L683
  mov    %r13,%rsp
  jmp    L571
L466:
  mov    -0x184(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rdx,%rax
  mov    %rax,%rdi
  call   <perror@plt>
L571:
  movl   $0x0,-0x180(%rbp)
  jmp    L60
L317:
  mov    -0x184(%rbp),%eax
  cmp    -0x180(%rbp),%eax
  jle    L685
  mov    -0x180(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rdx,%rax
  lea    D267(%rip),%rdx
  mov    %rdx,%rsi
  mov    %rax,%rdi
  call   <fopen@plt>
  mov    %rax,-0x50(%rbp)
  cmpq   $0x0,-0x50(%rbp)
  je     L564
  mov    %rsp,%rax
  mov    %rax,%r13
  mov    -0x164(%rbp),%ebx
  movslq %ebx,%rax
  sub    $0x1,%rax
  mov    %rax,-0x48(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x350(%rbp)
  movq   $0x0,-0x348(%rbp)
  movslq %ebx,%rax
  mov    %rax,-0x360(%rbp)
  movq   $0x0,-0x358(%rbp)
  movslq %ebx,%rdx
  mov    $0x10,%eax
  sub    $0x1,%rax
  add    %rdx,%rax
  mov    $0x10,%edi
  mov    $0x0,%edx
  div    %rdi
  imul   $0x10,%rax,%rdx
  mov    %rdx,%rax
  and    $0xfffffffffffff000,%rax
  mov    %rsp,%rcx
  sub    %rax,%rcx
L478:
  cmp    %rcx,%rsp
  je     L21
  sub    $0x1000,%rsp
  orq    $0x0,0xff8(%rsp)
  jmp    L478
L21:
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    %rax,%rsp
  mov    %rdx,%rax
  and    $0xfff,%eax
  test   %rax,%rax
  je     L494
  mov    %rdx,%rax
  and    $0xfff,%eax
  sub    $0x8,%rax
  add    %rsp,%rax
  orq    $0x0,(%rax)
L494:
  mov    %rsp,%rax
  add    $0x0,%rax
  mov    %rax,-0x40(%rbp)
  jmp    L174
L36:
  mov    -0x40(%rbp),%rax
  movzbl (%rax),%eax
  cmp    $0x3e,%al
  je     L174
  mov    -0x40(%rbp),%rax
  mov    %rax,%rdi
  call   <strlen@plt>
  mov    %eax,-0x15c(%rbp)
  subl   $0x1,-0x15c(%rbp)
  mov    -0x40(%rbp),%rdx
  mov    -0x15c(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    $0xa,%al
  jne    L380
  mov    -0x40(%rbp),%rdx
  mov    -0x15c(%rbp),%eax
  cltq
  movb   $0x0,(%rdx,%rax,1)
L380:
  mov    -0x40(%rbp),%rax
  mov    -0x70(%rbp),%rdx
  mov    %rax,%rsi
  mov    %rdx,%rdi
  call   <strcpy@plt>
  mov    -0x50(%rbp),%rax
  mov    %rax,%rdi
  call   <fclose@plt>
L174:
  mov    -0x50(%rbp),%rax
  mov    -0x40(%rbp),%rcx
  mov    %rax,%rdx
  mov    %ebx,%esi
  mov    %rcx,%rdi
  call   <fgets@plt>
  test   %rax,%rax
  jne    L36
  mov    %r13,%rsp
  jmp    L160
L564:
  mov    -0x180(%rbp),%eax
  cltq
  imul   %r12,%rax
  mov    %rax,%rdx
  mov    -0x98(%rbp),%rax
  add    %rdx,%rax
  mov    %rax,%rdi
  call   <perror@plt>
L160:
  mov    -0x80(%rbp),%rax
  mov    %rax,%rdi
  call   <strlen@plt>
  mov    %eax,-0x158(%rbp)
  movl   $0x0,-0x174(%rbp)
  movl   $0x0,-0x170(%rbp)
  movl   $0x0,-0x17c(%rbp)
  jmp    L285
L54:
  mov    -0x80(%rbp),%rdx
  mov    -0x17c(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    $0x4e,%al
  je     L145
  mov    -0x70(%rbp),%rdx
  mov    -0x17c(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    $0x4e,%al
  jne    L278
L145:
  addl   $0x1,-0x170(%rbp)
  jmp    L108
L278:
  mov    -0x80(%rbp),%rdx
  mov    -0x17c(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%ecx
  mov    -0x70(%rbp),%rdx
  mov    -0x17c(%rbp),%eax
  cltq
  movzbl (%rdx,%rax,1),%eax
  cmp    %al,%cl
  je     L108
  addl   $0x1,-0x174(%rbp)
L108:
  addl   $0x1,-0x17c(%rbp)
L285:
  mov    -0x17c(%rbp),%eax
  cmp    -0x158(%rbp),%eax
  jl     L54
  mov    -0x158(%rbp),%eax
  sub    -0x170(%rbp),%eax
  mov    %eax,-0x154(%rbp)
  pxor   %xmm0,%xmm0
  cvtsi2ssl -0x174(%rbp),%xmm0
  pxor   %xmm1,%xmm1
  cvtsi2ssl -0x154(%rbp),%xmm1
  divss  %xmm1,%xmm0
  movss  %xmm0,-0x150(%rbp)
  movss  -0x150(%rbp),%xmm1
  movss  D124(%rip),%xmm0
  mulss  %xmm0,%xmm1
  movss  D214(%rip),%xmm0
  subss  %xmm1,%xmm0
  cvttss2si %xmm0,%eax
  mov    %eax,%edi
  call   <log@plt>
  movss  D244(%rip),%xmm1
  mulss  %xmm1,%xmm0
  movss  %xmm0,-0x14c(%rbp)
  pxor   %xmm2,%xmm2
  cvtss2sd -0x14c(%rbp),%xmm2
  movq   %xmm2,%rcx
  mov    -0x180(%rbp),%eax
  cltq
  mov    -0x1b0(%rbp),%rbx
  imul   %rbx,%rax
  mov    %rax,%rdx
  mov    -0xb0(%rbp),%rax
  lea    (%rdx,%rax,1),%rdi
  mov    -0x184(%rbp),%eax
  cltq
  imul   %rbx,%rax
  mov    %rax,%rdx
  mov    -0xb0(%rbp),%rax
  lea    (%rdx,%rax,1),%rsi
  mov    -0x154(%rbp),%edx
  mov    -0x174(%rbp),%eax
  mov    -0xf0(%rbp),%r10
  movq   %rcx,%xmm0
  mov    %edx,%r9d
  mov    %eax,%r8d
  mov    %rdi,%rcx
  mov    %rsi,%rdx
  lea    D242(%rip),%rax
  mov    %rax,%rsi
  mov    %r10,%rdi
  mov    $0x1,%eax
  call   <fprintf@plt>
  addl   $0x1,-0x178(%rbp)
L685:
  addl   $0x1,-0x180(%rbp)
L60:
  mov    -0x180(%rbp),%eax
  cmp    -0x188(%rbp),%eax
  jl     L317
  addl   $0x1,-0x184(%rbp)
L240:
  mov    -0x184(%rbp),%eax
  cmp    -0x188(%rbp),%eax
  jl     L267
  mov    -0x140(%rbp),%rax
  mov    %rax,%rsi
  lea    D53(%rip),%rax
  mov    %rax,%rdi
  call   <printf@plt>
  mov    -0x140(%rbp),%rdx
  mov    -0x108(%rbp),%rax
  lea    D53(%rip),%rcx
  mov    %rcx,%rsi
  mov    %rax,%rdi
  mov    $0x0,%eax
  call   <fprintf@plt>
  mov    $0x0,%eax
  mov    -0x368(%rbp),%rsp
  mov    -0x38(%rbp),%rdx
  sub    %fs:0x28,%rdx
  je     L704
  call   <__stack_chk_fail@plt>
L704:
  lea    -0x28(%rbp),%rsp
  pop    %rbx
  pop    %r12
  pop    %r13
  pop    %r14
  pop    %r15
  pop    %rbp
  ret
```

tool_calls: name: read_data
arguments: data_tag: D275
data_type: string
name: read_data
arguments: data_tag: D233
data_type: string
name: read_data
arguments: data_tag: D269
data_type: string
name: read_data
arguments: data_tag: D220
data_type: string
name: read_data
arguments: data_tag: D121
data_type: string
name: read_data
arguments: data_tag: D26
data_type: string
name: read_data
arguments: data_tag: D113
data_type: string
name: read_data
arguments: data_tag: D99
data_type: string
name: read_data
arguments: data_tag: D177
data_type: string
name: read_data
arguments: data_tag: D267
data_type: string
name: read_data
arguments: data_tag: D45
data_type: string
name: read_data
arguments: data_tag: D172
data_type: string
name: read_data
arguments: data_tag: D124
data_type: byte[4]
name: read_data
arguments: data_tag: D214
data_type: byte[4]
name: read_data
arguments: data_tag: D244
data_type: byte[4]
name: read_data
arguments: data_tag: D242
data_type: string
name: read_data
arguments: data_tag: D53
data_type: string

tool: D275: /Analysis/log.txt

tool: D233: a

tool: D269: /Analysis/

tool: D220: /

tool: D121: _

tool: D26: _di_simulated.csv

tool: D113: w

tool: D99: Isolate_1,Isolate_2,SNPs,Sites,Divergence


tool: D177: Isolates.txt

tool: D267: r

tool: D45: /Intergenic_files/

tool: D172: .fasta

tool: {"D124": [0xab,0xaa,0xaa,0x3f]}

tool: {"D214": [0x00,0x00,0x80,0x3f]}

tool: {"D244": [0x00,0x00,0x40,0xbf]}

tool: D242: %s,%s,%i,%i,%0.6f


tool: D53: %s di calculated.


assistant: ```c
int main(int argc, char *argv[]) {
  int arg_len = 1000;
  char species[arg_len];
  strcpy(species, argv[1]);
  char analysis[arg_len];
  strcpy(analysis, argv[2]);
  char base_dir[arg_len];
  strcpy(base_dir, argv[3]);
  char log_file_name[arg_len];
  strcpy(log_file_name, base_dir);
  strcat(log_file_name, "/Analysis/log.txt");
  FILE *log_file = fopen(log_file_name, "a");
  char output_file_name[arg_len];
  strcpy(output_file_name, base_dir);
  strcat(output_file_name, "/Analysis/");
  strcat(output_file_name, analysis);
  strcat(output_file_name, "/");
  strcat(output_file_name, species);
  strcat(output_file_name, "_");
  strcat(output_file_name, analysis);
  strcat(output_file_name, "/");
  strcat(output_file_name, species);
  strcat(output_file_name, "_di_simulated.csv");
  FILE *output = fopen(output_file_name, "w");
  fprintf(output, "Isolate_1,Isolate_2,SNPs,Sites,Divergence\n");
  char isolates_file_name[arg_len];
  strcpy(isolates_file_name, base_dir);
  strcat(isolates_file_name, "/Analysis/");
  strcat(isolates_file_name, analysis);
  strcat(isolates_file_name, "/");
  strcat(isolates_file_name, species);
  strcat(isolates_file_name, "_");
  strcat(isolates_file_name, analysis);
  strcat(isolates_file_name, "/");
  strcat(isolates_file_name, "Isolates.txt");
  char isolate_name[arg_len];
  int isolate_count;
  isolate_count = 0;
  FILE *isolates_file = fopen(isolates_file_name, "r");
  if (isolates_file != NULL) {
    while (fgets(isolate_name, sizeof isolate_name, isolates_file) != NULL) {
      isolate_count++;
    }
    fclose(isolates_file);
  } else {
    perror(isolates_file_name);
  }
  char isolate_name_array[isolate_count][arg_len];
  char isolate_file_name_array[isolate_count][arg_len];
  isolate_count = 0;
  FILE *isolates_file_2 = fopen(isolates_file_name, "r");
  if (isolates_file_2 != NULL) {
    while (fgets(isolate_name, sizeof isolate_name, isolates_file_2) != NULL) {
      int isolate_name_len;
      isolate_name_len = strlen(isolate_name);
      if (isolate_name[(isolate_name_len - 1)] == '\n') {
        isolate_name[(isolate_name_len - 1)] = '\0';
      }
      strcpy(isolate_name_array[isolate_count], isolate_name);
      strcpy(isolate_file_name_array[isolate_count], base_dir);
      strcat(isolate_file_name_array[isolate_count], "/Analysis/");
      strcat(isolate_file_name_array[isolate_count], analysis);
      strcat(isolate_file_name_array[isolate_count], "/");
      strcat(isolate_file_name_array[isolate_count], species);
      strcat(isolate_file_name_array[isolate_count], "_");
      strcat(isolate_file_name_array[isolate_count], analysis);
      strcat(isolate_file_name_array[isolate_count], "/Intergenic_files/");
      strcat(isolate_file_name_array[isolate_count], isolate_name);
      strcat(isolate_file_name_array[isolate_count], ".fasta");
      isolate_count++;
    }
    fclose(isolates_file_2);
  } else {
    perror(isolates_file_name);
  }
  int a;
  int b;
  int i;
  int genome_max = 1000000;
  char genome1[genome_max];
  char genome2[genome_max];
  int count;
  count = 0;
  for (a = 0; a < isolate_count; a++) {
    FILE *file1 = fopen(isolate_file_name_array[a], "r");
    if (file1 != NULL) {
      char line1[genome_max];
      while (fgets(line1, sizeof line1, file1) != NULL) {
        if (line1[0] != '>') {
          int line1_len = strlen(line1);
          line1_len = (line1_len - 1);
          if (line1[line1_len] == '\n') {
            line1[line1_len] = '\0';
          }
          strcpy(genome1, line1);
          fclose(file1);
        }
      }
    } else {
      perror(isolate_file_name_array[a]);
    }
    for (b = 0; b < isolate_count; b++) {
      if (a > b) {
        FILE *file2 = fopen(isolate_file_name_array[b], "r");
        if (file2 != NULL) {
          char line2[genome_max];
          while (fgets(line2, sizeof line2, file2) != NULL) {
            if (line2[0] != '>') {
              int line2_len = strlen(line2);
              line2_len = (line2_len - 1);
              if (line2[line2_len] == '\n') {
                line2[line2_len] = '\0';
              }
              strcpy(genome2, line2);
              fclose(file2);
            }
          }
        } else {
          perror(isolate_file_name_array[b]);
        }
        int genome_len;
        genome_len = strlen(genome1);
        int snp;
        snp = 0;
        int n;
        n = 0;
        for (i = 0; i < genome_len; i++) {
          if (genome1[i] == 'N' || genome2[i] == 'N') {
            n++;
          } else {
            if (genome1[i] != genome2[i]) {
              snp++;
            }
          }
        }
        int sites;
        sites = (genome_len - n);
        float div;
        div = ((float)snp / sites);
        float JC_div;
        JC_div = (((float)-3 / 4) * (log(1 - (((float)4 / 3) * div))));
        fprintf(output, "%s,%s,%i,%i,%0.6f\n", isolate_name_array[a], isolate_name_array[b], snp, sites, JC_div);
        count++;
      }
    }
  }
  printf("%s di calculated.\n", species);
  fprintf(log_file, "%s di calculated.\n", species);
  return 0;
}
```