[OnePlus 3 Guides, News, & Discussion] lekronop:
I think what he meant is that there are a few errors when trying to apply profiles while using Sultan's CM13.

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Applying Project X.A.N.A (Battery variant) v4.0
Advanced Kernel Settings
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Author: Asiier
Settings By: Asiier
Device: One Plus 3
Codename: Project X.A.N.A (BT)
Build Status: Stable
Last Updated: 01/01/2017
For more information go to the XDA theard
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Checking Android version...
Android Marshmallow 6.0.1 detected!
MM detected... Applying proper settings
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Applying settings to LITTLE Cluster...
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Do not underclock!!! Set the clock speed to max and re-run the script.
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Applying settings to BIG Cluster
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Do not underclock!!! Set the clock speed to max and re-run the script.
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Checking ROM...
CM Based ROM detected
Applying appropriate values.
Enabling Input Boost at 556 MHz for the LITTLE cluster and at 0 MHz for the BIG Cluster
chmod: /sys/module/cpu_boost/parameters/input_boost_freq: No such file or directory
PX_battery[184]: can't create /sys/module/cpu_boost/parameters/input_boost_freq: No such file or directory
chmod: /sys/module/cpu_boost/parameters/boost_ms: No such file or directory
PX_battery[184]: can't create /sys/module/cpu_boost/parameters/boost_ms: No such file or directory
chmod: /sys/module/cpu_boost/parameters/input_boost_ms: No such file or directory
PX_battery[184]: can't create /sys/module/cpu_boost/parameters/input_boost_ms: No such file or directory
==========================================
Disabling TouchBoost
*Not supported for your current Kernel*
Disabling BCL and Removing Perfd
PX_battery[197]: can't create /sys/devices/soc/soc:qcom,bcl/mode: Permission denied
Disabling Aggressive CPU Thermal Throttling
PX_battery[200]: can't create /sys/module/msm_thermal/core_control/enabled: No such file or directory
PX_battery[201]: can't create /sys/module/msm_thermal/parameters/enabled: No such file or directory
Tweaking HMP Scheduler for correcting BIG Cluster utilization
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Tweaking other various Settings
·I/O Values
ZEN not avalible, setting CFQ instead...
Changing SDA block I/O scheduler

Changing SDB block I/O scheduler

Changing SDC block I/O scheduler

Changing SDD block I/O scheduler

Changing SDE block I/O scheduler

·Memory Values
·TCP Values
westwood reno
GPU Underclocking
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Project X.A.N.A v4.0 Successfully Applied!
You may now tweak them further
using EXKM or Kernel Adiutor
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Done, this will be automatically closed...

Oh and originally the scripts won't detect Sultan's CM13 as a CM-based ROM and therefore applies values for AOSP-based ROMs. This is because the scripts check for "userdebug" in the build.prop but Sultan's ROM is based off stable branches and has only a "user"-build.

Maybe you could edit the scripts to include Sultan's CM when checking whether it has to apply CM-based values or AOSP-based ones.

Are you using the stock kernel that comes with Sultan's ROM or are you using any custom kernel?