[Xperia Z3 General] oguzh4n:
I tried with different ports but nothing changed.

Flashtool logs here:

0/045/2016 00:45:05 - DEBUG - (Bundle.java:88) - Creating bundle from ftf file : C:\Users\OZY\.flashTool\firmwares\D6603-6653_23.5.A.0.575_kernel.ftf
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : kernel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : loader.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:88) - Creating bundle from ftf file : C:\Users\OZY\.flashTool\firmwares\D6603_23.5.A.0.575_1289-4157_R7D.ftf
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : loader.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fsg.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fs_1.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fs_2.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : apps_log.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : auto-boot.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : boot_delivery.xml
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : cache.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : cust-reset.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : elabel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : fota-reset.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : fotakernel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : kernel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : osv-restriction.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : partition.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : system.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : userdata.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:88) - Creating bundle from ftf file : C:\Users\OZY\.flashTool\firmwares\D6603_23.5.A.1.291_1289-4826_R4D.ftf
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : loader.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : default.fsc
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fsg.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fs_1.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : amss_fs_2.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : apps_log.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : auto-boot.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : boot_delivery.xml
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : cache.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : cust-reset.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : elabel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : fota-reset.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : fotakernel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : kernel.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : osv-restriction.ta
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : partition.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : system.sin
30/045/2016 00:45:05 - DEBUG - (Bundle.java:104) - Added this entry to the bundle list : userdata.sin
30/045/2016 00:45:16 - INFO - (MainSWT.java:1395) - Selected Bundle for Sony Xperia Z3(D6603). FW release : 23.5.A.0.575. Customization : Kernel Only
30/045/2016 00:45:16 - INFO - (Bundle.java:471) - Preparing files for flashing
30/045/2016 00:45:16 - DEBUG - (Bundle.java:475) - Created the prepared folder
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:140) - Saving entry kernel.sin to disk
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:72) - Streaming from jar entry : kernel.sin
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:146) - Writing Entry to C:\Users\OZY\.flashTool\firmwares\prepared\kernel.sin
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:140) - Saving entry loader.sin to disk
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:72) - Streaming from jar entry : loader.sin
30/045/2016 00:45:16 - DEBUG - (BundleEntry.java:146) - Writing Entry to C:\Users\OZY\.flashTool\firmwares\prepared\loader.sin
30/045/2016 00:45:16 - INFO - (FlashJob.java:36) - Please connect your device into flashmode.
30/045/2016 00:45:17 - INFO - (USBFlashWin32.java:32) - Opening device for R/W
30/045/2016 00:45:17 - INFO - (X10flash.java:955) - Reading device information
30/045/2016 00:45:17 - DEBUG - (USBFlashWin32.java:80) - Reading packet from phone
30/045/2016 00:45:17 - DEBUG - (USBFlashWin32.java:86) - IN : CommandID : 1 / Flags : false,false,false / Data length : 1010 / Data CRC32 : 88 85 AD C4
30/045/2016 00:45:17 - DEBUG - (X10flash.java:962) - PROT_VER="04";VER="S1_Boot_MSM8974AC_LA3.0_M_3";S1SBL_VER="MSM8974AB_26";ID="1286-7314";TYPE="S1_BOOT";ACTIVE_COMP_AID="0004";MAX_PKT_SZ="00010000";IGNORE_CRC="HDR,DATA";DEF_SEC="ON";HWCONF_AID="0004";LOADER_AID="0004";BOOT_AID="0004";NO_SUB_SYSTEMS="0001";OTP_DATA_1="01000400";OTP_LOCK_STATUS_1="LOCKED";UNIQUE_DEV_ID_1="0C6B6E4F";IDCODE_1="107B40E1";S1_ROOT="S1_Root_9c84,S1_Root_Test_b316";MSN="BH905Z1F1L";HW_CONFIG_VER="0006";HW_CONFIG_INFO="HWC_ShinanoR2_Com_001";SEC_STATE="HWC_ShinanoR2_Com_001";IMEI="35518806396293";PROD_ID="0001";GLOB_SEC="0000";PHONE_ID="0000:35518806396293";HW_CONFIG="S1_Boot:0004:0013,S1_Loader:0004:000B,S1_SW:0006:0013,S1_Cust:0004:0013,S1_ELabel:0004:0013,S1_SL:0004:0043,S1_ModemSW:0006:0013,S1_FOTA:0006:0023,S1_RIC:0006:0123,S1_HexagonSW2:0006:0023,S1_RIVA2:0006:0023,S1_Video2:0006:0023,S1_ETS:0006:0013,S1_RAMETS:0006:000B,S1_TZExec2:0006:00A3,S1_RLock:0004:0223";ROOTING_STATUS="ROOTABLE";PLF_ROOT_1="CF19D6FAD8029B66B15246BF3C9D216FC1D2235D87706E0458C7125BB1E436EC";

Recovery screen shot here:

---------- Post added at 11:37 PM ---------- Previous post was at 10:52 PM ----------

Finally, its rooted :laugh:

I executed adb commands one by one from the command line (in the install.bat) after the flashing kernel. :good:

I have some dummy questions:

- Is root access or recovery is deleted when I install the new rom?

- Is root access or recovery is deleted when I install updates from Sony?

- Is root access or recovery is deleted when I go to factory reset?

Thanks,