[Android Q&A, Help & Troubleshooting] KainXSS:
I've been using CWM to flash roms on mine for a while now, but not the one from the russian forum, it has mounting issues. I've been using SDC's here at XDA since its more reliable, try it out. http://xdaforums.com/android/development/intel-android-devices-root-temp-cwm-t2975096

also I already got the bone stock system and boot.img(S000143_140929) to flash through CWM and tried ota form it(worked fine). This is the updater script I am using for the stock one if it helps.

ui_print("Installation Starting......");
ui_print("Formatting System......");
format("ext4", "EMMC", "/dev/block/platform/intel/by-label/system", "0", "/system");
ui_print("Mounting System......");
mount("ext4", "EMMC", "/dev/block/platform/intel/by-label/system", "/system");
show_progress(0.500000, 0);
ui_print("Extracting System......");
package_extract_dir("system", "/system");
ui_print("Symlinking.......");
symlink("libGLESv2.so", "/system/lib/libGLESv3.so");
symlink("Roboto-Bold.ttf", "/system/fonts/DroidSans-Bold.ttf");
symlink("Roboto-Regular.ttf", "/system/fonts/DroidSans.ttf");
symlink("libhoudini.so.4.0.8.45720", "/system/lib/libhoudini.so");
symlink("mksh", "/system/bin/sh");
symlink("toolbox", "/system/bin/cat", "/system/bin/chcon",
"/system/bin/chmod", "/system/bin/chown", "/system/bin/clear",
"/system/bin/cmp", "/system/bin/cp", "/system/bin/date",
"/system/bin/dd", "/system/bin/df", "/system/bin/dmesg",
"/system/bin/du", "/system/bin/getenforce", "/system/bin/getevent",
"/system/bin/getprop", "/system/bin/getsebool", "/system/bin/grep",
"/system/bin/hd", "/system/bin/id", "/system/bin/ifconfig",
"/system/bin/iftop", "/system/bin/insmod", "/system/bin/ioctl",
"/system/bin/ionice", "/system/bin/kill", "/system/bin/ln",
"/system/bin/load_policy", "/system/bin/log", "/system/bin/ls",
"/system/bin/lsmod", "/system/bin/lsof", "/system/bin/md5",
"/system/bin/mkdir", "/system/bin/mkswap", "/system/bin/mount",
"/system/bin/mv", "/system/bin/nandread", "/system/bin/netstat",
"/system/bin/newfs_msdos", "/system/bin/notify", "/system/bin/printenv",
"/system/bin/ps", "/system/bin/readlink", "/system/bin/renice",
"/system/bin/restorecon", "/system/bin/rm", "/system/bin/rmdir",
"/system/bin/rmmod", "/system/bin/route", "/system/bin/runcon",
"/system/bin/schedtop", "/system/bin/sendevent",
"/system/bin/setconsole", "/system/bin/setenforce",
"/system/bin/setprop", "/system/bin/setsebool", "/system/bin/sleep",
"/system/bin/smd", "/system/bin/start", "/system/bin/stop",
"/system/bin/swapoff", "/system/bin/swapon", "/system/bin/sync",
"/system/bin/top", "/system/bin/touch", "/system/bin/umount",
"/system/bin/uptime", "/system/bin/vmstat", "/system/bin/watchprops",
"/system/bin/wipe");
ui_print("Setting Permissions.......");
set_metadata_recursive("/system", "uid", 0, "gid", 0, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/bin", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/bin/app_process", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:zygote_exec:s0");
set_metadata("/system/bin/clatd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:clatd_exec:s0");
set_metadata("/system/bin/dbus-daemon", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:dbusd_exec:s0");
set_metadata("/system/bin/debuggerd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:debuggerd_exec:s0");
set_metadata("/system/bin/dhcpcd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:dhcp_exec:s0");
set_metadata("/system/bin/dnsmasq", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:dnsmasq_exec:s0");
set_metadata("/system/bin/drmserver", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:drmserver_exec:s0");
set_metadata("/system/bin/hostapd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:hostapd_exec:s0");
set_metadata("/system/bin/installd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:installd_exec:s0");
set_metadata("/system/bin/keystore", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:keystore_exec:s0");
set_metadata("/system/bin/mediaserver", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:mediaserver_exec:s0");
set_metadata("/system/bin/mksh", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:shell_exec:s0");
set_metadata("/system/bin/mtpd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:mtp_exec:s0");
set_metadata("/system/bin/netcfg", "uid", 0, "gid", 3003, "mode", 02750, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/bin/netd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:netd_exec:s0");
set_metadata("/system/bin/ping", "uid", 0, "gid", 0, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:ping_exec:s0");
set_metadata("/system/bin/pppd", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:ppp_exec:s0");
set_metadata("/system/bin/racoon", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:racoon_exec:s0");
set_metadata("/system/bin/run-as", "uid", 0, "gid", 2000, "mode", 0750, "capabilities", 0xc0, "selabel", "u:object_r:runas_exec:s0");
set_metadata("/system/bin/sdcard", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:sdcardd_exec:s0");
set_metadata("/system/bin/servicemanager", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:servicemanager_exec:s0");
set_metadata("/system/bin/surfaceflinger", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:surfaceflinger_exec:s0");
set_metadata("/system/bin/vold", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:vold_exec:s0");
set_metadata("/system/bin/wpa_supplicant", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:wpa_exec:s0");
set_metadata_recursive("/system/etc/dhcpcd", "uid", 0, "gid", 0, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:dhcp_system_file:s0");
set_metadata("/system/etc/dhcpcd/dhcpcd-run-hooks", "uid", 1014, "gid", 2000, "mode", 0550, "capabilities", 0x0, "selabel", "u:object_r:dhcp_system_file:s0");
set_metadata_recursive("/system/etc/ppp", "uid", 0, "gid", 0, "dmode", 0755, "fmode", 0555, "capabilities", 0x0, "selabel", "u:object_r:ppp_system_file:s0");
set_metadata("/system/vendor", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/Khronos", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/Khronos/OpenCL/vendors/Intel.icd", "uid", 0, "gid", 0, "mode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/bin", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/firmware", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/lib", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/lib/drm", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/lib/drm/libdrmwvmplugin.so", "uid", 0, "gid", 0, "mode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/lib/mediadrm", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/lib/mediadrm/libwvdrmengine.so", "uid", 0, "gid", 0, "mode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/lib/soundfx", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/lib/soundfx/libdseffect.so", "uid", 0, "gid", 0, "mode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/media", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/pittpatt", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/pittpatt/models", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/pittpatt/models/detection", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/pittpatt/models/detection/multi_pose_face_landmark_detectors.7", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata("/system/vendor/pittpatt/models/detection/yaw_roll_face_detectors.6", "uid", 0, "gid", 2000, "mode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/vendor/pittpatt/models/recognition", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0644, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
set_metadata_recursive("/system/xbin", "uid", 0, "gid", 2000, "dmode", 0755, "fmode", 0755, "capabilities", 0x0, "selabel", "u:object_r:system_file:s0");
ui_print("Unmounting System......");
unmount("/system");
ui_print("Flashing Boot.img......");
invalidate_os("boot");
package_extract_file("boot.img", "/tmp/boot.img");
flash_os_image("/tmp/boot.img", "boot");
delete("/tmp/boot.img");
restore_os("boot");
ui_print(".......Installation Completed");

I will try to upload the zip so you can see it tomorrow, as I have crappy internet:crying: and its gonna take a while since its like 2 gig, hoping it helps you out