[Galaxy S 5 General] svadev:
Now i tested it for Android 5.1.1: SM-G925F, LMY47X.G925FXXU2BOFJ - all works fine!

Deodexer for Android Runtime (art) (Version 3.2 от 02/07/2015) © Valery Studenikin, 2015

Path to stock /system directory: F:\TEMP\G925F\system
Android 5.1.1: SM-G925F, LMY47X.G925FXXU2BOFJ, changelist 5012324, Sat Jun 20 07:28:37 KST 2015
Files deodexed succesfully: 388, with errors: 0. CPU time: 00:07:30 (450,092 sec.)

The necessary links for applications libraries:

symlink("/system/lib64/libaed.so", "/system/app/AdvSoundDetector2015/lib/arm64/libaed.so");
symlink("/system/lib64/libfdb.so", "/system/app/AdvSoundDetector2015/lib/arm64/libfdb.so");
symlink("/system/lib64/libSamsungBCPP.so", "/system/app/AdvSoundDetector2015/lib/arm64/libSamsungBCPP.so");
symlink("/system/lib/libasf_fileshare.so", "/system/app/AllshareFileShare/lib/arm/libasf_fileshare.so");
symlink("/system/lib/libasf_fileshareserver.so", "/system/app/AllshareFileShareServer/lib/arm/libasf_fileshareserver.so");
symlink("/system/lib/libasf_mediashare.so", "/system/app/AllshareMediaShare/lib/arm/libasf_mediashare.so");
symlink("/system/lib/libbluetooth_jni.so", "/system/app/Bluetooth/lib/arm/libbluetooth_jni.so");
symlink("/system/lib64/libnfc_nci_jni.so", "/system/app/NfcNci/lib/arm64/libnfc_nci_jni.so");
symlink("/system/lib64/libjni_pacprocessor.so", "/system/app/PacProcessor/lib/arm64/libjni_pacprocessor.so");
symlink("/system/lib/libmorpho_panorama_wa_for_viewer.so", "/system/app/Panorama360Viewer_Zero/lib/arm/libmorpho_panorama_wa_for_viewer.so");
symlink("/system/lib/libmorpho_sensor_fusion_for_viewer.so", "/system/app/Panorama360Viewer_Zero/lib/arm/libmorpho_sensor_fusion_for_viewer.so");
symlink("/system/lib/libcommonpawrapper.so", "/system/app/RootPA/lib/arm/libcommonpawrapper.so");
symlink("/system/lib/libapa_jni.so", "/system/app/SapaMonitor/lib/arm/libapa_jni.so");
symlink("/system/lib64/libgkdp_sv_engine.so", "/system/app/SCService/lib/arm64/libgkdp_sv_engine.so");
symlink("/system/lib64/libscservice_jni.so", "/system/app/SCService/lib/arm64/libscservice_jni.so");
symlink("/system/lib/libDioDict3EngineNativeFrame.so", "/system/app/SecDict2Zero/lib/arm/libDioDict3EngineNativeFrame.so");
symlink("/system/lib/libdioiculemma.so", "/system/app/SecDict2Zero/lib/arm/libdioiculemma.so");
symlink("/system/lib/libjma.so", "/system/app/SecDict2Zero/lib/arm/libjma.so");
symlink("/system/lib/libnltk.so", "/system/app/SecDict2Zero/lib/arm/libnltk.so");
symlink("/system/lib/libstlport_shared.so", "/system/app/SecDict2Zero/lib/arm/libstlport_shared.so");
symlink("/system/lib64/libprintspooler_jni_mr1.so", "/system/app/SPrintSpoolerLMR1/lib/arm64/libprintspooler_jni_mr1.so");
symlink("/system/lib/libTui.so", "/system/app/TuiService/lib/arm/libTui.so");
symlink("/system/lib64/libdefcontainer_jni.so", "/system/priv-app/DefaultContainerService/lib/arm64/libdefcontainer_jni.so");
symlink("/system/lib64/libPlatformStrings.so", "/system/priv-app/HealthService/lib/arm64/libPlatformStrings.so");
symlink("/system/lib64/libSensorNativeProtocol.so", "/system/priv-app/HealthService/lib/arm64/libSensorNativeProtocol.so");
symlink("/system/lib/libatomcore.so", "/system/priv-app/OutOfFocusViewer_WQHD_K/lib/arm/libatomcore.so");
symlink("/system/lib/libatomjpeg.so", "/system/priv-app/OutOfFocusViewer_WQHD_K/lib/arm/libatomjpeg.so");
symlink("/system/lib/libsecipx.so", "/system/priv-app/OutOfFocusViewer_WQHD_K/lib/arm/libsecipx.so");
symlink("/system/lib/libSRIB_FocusShot.so", "/system/priv-app/OutOfFocusViewer_WQHD_K/lib/arm/libSRIB_FocusShot.so");
symlink("/system/lib/libSamsungVoiceEngine.so", "/system/priv-app/S-Voice_Android_phone/lib/arm/libSamsungVoiceEngine.so");
symlink("/system/lib/libSensoryUDTSIDEngine.so", "/system/priv-app/S-Voice_Android_phone/lib/arm/libSensoryUDTSIDEngine.so");
symlink("/system/lib/libSensoryWakeUpEngine.so", "/system/priv-app/S-Voice_Android_phone/lib/arm/libSensoryWakeUpEngine.so");
symlink("/system/lib/libsvoxtts.so", "/system/priv-app/S-Voice_Android_phone/lib/arm/libsvoxtts.so");
symlink("/system/lib64/libalgo_wrap.so", "/system/priv-app/SHealth4_2/lib/arm64/libalgo_wrap.so");
symlink("/system/lib64/libdemodfsk.so", "/system/priv-app/SHealth4_2/lib/arm64/libdemodfsk.so");
symlink("/system/lib64/libload-strings.so", "/system/priv-app/SHealth4_2/lib/arm64/libload-strings.so");
symlink("/system/lib64/libPedometer.so", "/system/priv-app/SHealth4_2/lib/arm64/libPedometer.so");
symlink("/system/lib64/libPlatformStrings.so", "/system/priv-app/SHealth4_2/lib/arm64/libPlatformStrings.so");
symlink("/system/lib64/libSensorNativeProtocol.so", "/system/priv-app/SHealth4_2/lib/arm64/libSensorNativeProtocol.so");
symlink("/system/lib64/lib_stressanalyzer_v03_jni.so", "/system/priv-app/SHealth4_2/lib/arm64/lib_stressanalyzer_v03_jni.so");
symlink("/system/lib/libSamsungVoiceEngine.so", "/system/priv-app/SVF/lib/arm/libSamsungVoiceEngine.so");
symlink("/system/lib/libCreateSceneMap.so", "/system/priv-app/VirtualTourViewer_WQHD_lightTheme/lib/arm/libCreateSceneMap.so");
symlink("/system/lib/libqjpeg_secvision.so", "/system/priv-app/VirtualTourViewer_WQHD_lightTheme/lib/arm/libqjpeg_secvision.so");
symlink("/system/lib/liblifevibes_mediashare_hw_jni.so", "/system/priv-app/VoiceNote4Z_32/lib/arm/liblifevibes_mediashare_hw_jni.so");

Attention: framework deodexed only for arm64 (arm version not deodexed and not was copied to result)

List of apks that have arm and arm64 versions (deodexed only for arm64):

/system/app/WebViewGoogle.apk
/system/priv-app/GmsCore.apk

List of deodexed apks that have only arm version (don't have arm64):

/system/app/AllshareFileShare.apk
/system/app/AllshareFileShareServer.apk
/system/app/AllshareMediaShare.apk
/system/app/Bluetooth.apk
/system/app/Drive.apk
/system/app/Dropbox_zero.apk
/system/app/FBAppManager.apk
/system/app/Hangouts.apk
/system/app/OneNote_Compact_Samsung.apk
/system/app/Panorama360Viewer_Zero.apk
/system/app/PlusOne.apk
/system/app/QuickConnect_20.apk
/system/app/RootPA.apk
/system/app/SapaMonitor.apk
/system/app/SBrowser_3.0.38.apk
/system/app/SCONE_Android_ProxyService_Lib.apk
/system/app/SecDict2Zero.apk
/system/app/TuiService.apk
/system/app/Videos.apk
/system/priv-app/OutOfFocusViewer_WQHD_K.apk
/system/priv-app/S-Voice_Android_phone.apk
/system/priv-app/SVF.apk
/system/priv-app/TouchWizHome_ZERO_MR1.apk
/system/priv-app/VirtualTourViewer_WQHD_lightTheme.apk
/system/priv-app/VoiceNote4Z_32.apk
/system/priv-app/VoiceWakeUp.apk

List of originally deodexed (within stock firmware) files, are left as they were originally:

/system/framework/com.dropboxpartner.jar
/system/framework/com.google.android.maps.jar
/system/framework/com.google.android.media.effects.jar
/system/framework/com.samsung.device.jar
/system/app/Chrome.apk
/system/app/FactoryCamera_FB.apk
/system/app/Maps.apk
/system/app/minimode-res.apk
/system/app/MirrorLink.apk
/system/app/SecFactoryPhoneTest.apk
/system/app/secvisualeffect-res.apk
/system/app/YouTube.apk
/system/priv-app/AutomationTest_FB.apk
/system/priv-app/AutoPreconfig.apk
/system/priv-app/DeviceKeystring.apk
/system/priv-app/DeviceTest.apk
/system/priv-app/HwModuleTest.apk
/system/priv-app/KLMSAgent.apk
/system/priv-app/serviceModeApp_FB.apk
/system/priv-app/ServiceModeApp_RIL.apk
/system/priv-app/SMCore.apk