[Note Edge Accessories] jeep447:
Ok so I thought I'd share this because I believe I might have actually solved this problem (and if I'm right I'll post pictures and a walk through of what I did), but first I just wanted to make sure that I'm understanding what you guys did as far as the original mod goes.

For those of you who are having the issue with the flip cover not being recognized on Lollipop and MM firmwares, when you did this wireless charging mod did you cut out the bottom pin (out of the 3 vertical pins) of the flip cover module to allow room for the 2 pins (horizontal) of the wireless charging receiver?

If so I'm assuming that's what's causing the problem with it not working on Lollipop and MM, because I modded mine a completely different way (I didn't even use a wireless charge back cover for the note edge, just a cheap wireless qi receiver from Amazon) without removing the bottom pin of the flip cover module and it still works like it should on Lollipop and MM.

My back cover also sits completely flush with no bumps and wireless charging works even when the phone is on the charging pad with the front cover flipped around back, and like I said the cover (and wireless charging) functions as it should on Lollipop and MM and I've never had a problem with selecting the edge style either.

Here's a quick run down of what I did (just so you know I'm not just talking out of my butt lol).. Amazon has the OEM flip cover for the Note Edge on sale for $12.99 brand new and in original packaging, and since mine had seen better days I went ahead and got a new one (not required though). I also got a cheap wireless qi receiver for the Note Edge which is thin, tapes to the battery, and has 2 copper "prongs" that basically just lay on top of and touch the 2 horizontal wireless charge pins on the back of the Note Edge.

1. I took a small flat screwdriver and gently pried the 3 pin module out of the flip case and then used the same screwdriver to gently separate the thin circuit board (with the 3 pins) from the small square plastic piece it was adhered to

2. I cut a thin piece of foil tape and taped it over the bottom pin and then wrapped it around and across the back side of the circuit board (which is where the left side pin of the wireless charging receiver will touch)

3. Then I placed the circuit board with the 3 pins facing down onto the back of the Note Edge so the 3 pins were lined up and touching the 3 pins underneath and then tape it down (at this point the flip cover will work normal and one way to test it is to run a magnet across the bottom left side of the Note Edge screen)

4. At this point there are still 2 "pins" left for the wireless qi receiver to connect with.. the actual pin on the right side and the foil tape "pin" on the left side. The only problem now is that the right pin sits just a little lower than the left foil pin, so I took a dremmel sanding disk and sanded down the left pin on the qi reciever so the 2 pins sit flush.. Then I just taped it down.

5. Put the cover on and profit!

Let me know if this is different from what I'm assuming you did with the mod because if so I'll post some pictures and a more detailed walk through, but mine works fine with all firmwares so I hope this helps!