[Xposed Framework Modules] WarBorg:
so I did what you asked, disabled all modules and fresh install 3.2.1 but I don't see any extra debugging in the logs take a look please

xposed:

03-17 04:15:51.579 I/Xposed ( 209): -----------------
03-17 04:15:51.579 I/Xposed ( 209): Starting Xposed version 80, compiled for SDK 23
03-17 04:15:51.579 I/Xposed ( 209): Device: Nexus 5 (LGE), Android version 6.0.1 (SDK 23)
03-17 04:15:51.579 I/Xposed ( 209): ROM: MMB29V
03-17 04:15:51.579 I/Xposed ( 209): Build fingerprint: google/hammerhead/hammerhead:6.0.1/MMB29V/2554798:user/release-keys
03-17 04:15:51.579 I/Xposed ( 209): Platform: armeabi-v7a, 32-bit binary, system server: yes
03-17 04:15:51.579 I/Xposed ( 209): SELinux enabled: yes, enforcing: yes
03-17 04:15:52.591 I/Xposed ( 209): -----------------
03-17 04:15:52.592 I/Xposed ( 209): Added Xposed (/system/framework/XposedBridge.jar) to CLASSPATH
03-17 04:15:52.968 I/Xposed ( 209): Detected ART runtime
03-17 04:15:53.012 I/Xposed ( 209): Found Xposed class de/robv/android/xposed/XposedBridge, now initializing
03-17 04:15:53.377 I/Xposed ( 209): Loading modules from /data/app/com.hamzah.pinshortcuts-1/base.apk
03-17 04:15:53.578 I/Xposed ( 209): Loading class com.hamzah.pinshortcuts.Main
03-17 04:15:53.586 E/Xposed ( 209): java.lang.ClassNotFoundException: Didn't find class "com.hamzah.pinshortcuts.Main" on path: DexPathList[[zip file "/data/app/com.hamzah.pinshortcuts-1/base.apk"],nativeLibraryDirectories=[/vendor/lib, /system/lib]]
03-17 04:15:53.586 E/Xposed ( 209):	at dalvik.system.BaseDexClassLoader.findClass(BaseDexClassLoader.java:56)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.ClassLoader.loadClass(ClassLoader.java:511)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.ClassLoader.loadClass(ClassLoader.java:469)
03-17 04:15:53.586 E/Xposed ( 209):	at de.robv.android.xposed.XposedBridge.loadModule(XposedBridge.java:471)
03-17 04:15:53.586 E/Xposed ( 209):	at de.robv.android.xposed.XposedBridge.loadModules(XposedBridge.java:436)
03-17 04:15:53.586 E/Xposed ( 209):	at de.robv.android.xposed.XposedBridge.main(XposedBridge.java:105)
03-17 04:15:53.586 E/Xposed ( 209):	Suppressed: java.lang.ClassNotFoundException: Didn't find class "com.hamzah.pinshortcuts.Main" on path: DexPathList[[zip file "/system/framework/XposedBridge.jar"],nativeLibraryDirectories=[/vendor/lib, /system/lib]]
03-17 04:15:53.586 E/Xposed ( 209):	at dalvik.system.BaseDexClassLoader.findClass(BaseDexClassLoader.java:56)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.ClassLoader.loadClass(ClassLoader.java:511)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.ClassLoader.loadClass(ClassLoader.java:504)
03-17 04:15:53.586 E/Xposed ( 209):	... 4 more
03-17 04:15:53.586 E/Xposed ( 209):	Suppressed: java.lang.ClassNotFoundException: com.hamzah.pinshortcuts.Main
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.Class.classForName(Native Method)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.BootClassLoader.findClass(ClassLoader.java:781)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.BootClassLoader.loadClass(ClassLoader.java:841)
03-17 04:15:53.586 E/Xposed ( 209):	at java.lang.ClassLoader.loadClass(ClassLoader.java:504)
03-17 04:15:53.586 E/Xposed ( 209):	... 5 more
03-17 04:15:53.586 E/Xposed ( 209):	Caused by: java.lang.NoClassDefFoundError: Class not found using the boot class loader; no stack trace available

logcat:

03-17 04:32:31.964 771 1304 I ActivityManager: START u0 {act=android.intent.action.MAIN cat=[android.intent.category.LAUNCHER] flg=0x10200000 cmp=com.hamzah.pinshortcuts/.MainMenu (has extras)} from uid 10084 on display 0

03-17 04:32:32.060 771 2672 I ActivityManager: Start proc 7064:com.hamzah.pinshortcuts/u0a95 for activity com.hamzah.pinshortcuts/.MainMenu

03-17 04:32:32.094 7064 7064 W System : ClassLoader referenced unknown path: /data/app/com.hamzah.pinshortcuts-1/lib/arm

03-17 04:32:32.931 7094 7094 I dex2oat : /system/bin/dex2oat --dex-file=/data/user/0/com.hamzah.pinshortcuts/cache/ads-611610140.jar --oat-file=/data/user/0/com.hamzah.pinshortcuts/cache/ads-611610140.dex

03-17 04:32:33.395 4828 4841 D Finsky : [493] InAppBillingUtils.getPreferredAccount: com.hamzah.pinshortcuts: Account from first account - [6YHhptN2ZLvSY_inJWCdZJm3YBo]

03-17 04:32:35.864 771 1324 I ActivityManager: START u0 {cmp=com.hamzah.pinshortcuts/.MainActivity} from uid 10095 on display 0

03-17 04:32:46.128 771 1292 I ActivityManager: START u0 {cmp=com.hamzah.pinshortcuts/.ShortcutCreator} from uid 10095 on display 0

03-17 04:34:33.806 771 1325 I ActivityManager: START u0 {cmp=com.hamzah.pinshortcuts/.ShortcutCreator} from uid 10095 on display 0

03-17 04:34:34.053 771 791 I ActivityManager: Displayed com.hamzah.pinshortcuts/.ShortcutCreator: +237ms

03-17 04:34:50.035 771 1292 I ActivityManager: START u0 {cmp=com.hamzah.pinshortcuts/.ShortcutCreator} from uid 10095 on display 0

03-17 04:34:50.234 771 791 I ActivityManager: Displayed com.hamzah.pinshortcuts/.ShortcutCreator: +188ms