[Xposed Framework Modules] :
hmmm, seems that a part of the Xposed log was getting lost after Xposed initialisation:

did a logcat at the boot animation (when Xposed is in the initialisation stage), and here's what it says:

D/XposedStartupMarker( 290): Current time: 1426368867, PID: 290
I/Xposed ( 290): -----------------
I/Xposed ( 290): Starting Xposed binary version 61, compiled for SDK 21
I/Xposed ( 290): Device: Xperia Z1 Compact (Sony), Android version 5.0.2 (SDK 21)
I/Xposed ( 290): ROM: pac_amami-userdebug 5.0.2 LRX22G eng.oshmoun.20150313.192904 test-keys
I/Xposed ( 290): Build fingerprint: Sony/D5503/D5503:4.4.4/14.4.A.0.133/k___jQ:user/release-keys
I/Xposed ( 290): Platform: armeabi-v7a, 32-bit binary, system server: yes
I/Xposed ( 290): SELinux enabled: yes, enforcing: yes
I/Xposed ( 290): -----------------
I/Xposed ( 290): Added Xposed (/system/framework/XposedBridge.jar) to CLASSPATH
D/AndroidRuntime( 290): >>>>>> AndroidRuntime START de.robv.android.xposed.XposedBridge <<<<<<
I/Xposed ( 290): Detected ART runtime
I/Xposed ( 290): Found Xposed class de/robv/android/xposed/XposedBridge, now initializing
I/Xposed ( 290): Initializing XposedBridge version 62
I/Xposed ( 290): Loading modules from /data/app/com.ryansteckler.nlpunbounce-2/base.apk
I/Xposed ( 290): Loading class com.ryansteckler.nlpunbounce.hooks.Wakelocks
I/Xposed ( 290): Loading modules from /data/app/xeed.xposed.cbppmod-1/base.apk
I/Xposed ( 290): Loading class xeed.xposed.cbppmod.PhysicalButtonMod
I/Xposed ( 290): PBMC: Android version 21, module version 3.0.3 (35)
I/Xposed ( 290): Loading modules from /data/app/com.ceco.lollipop.gravitybox-1/base.apk
I/Xposed ( 290): Loading class com.ceco.lollipop.gravitybox.GravityBox
I/Xposed ( 290): GB:Hardware: qcom
I/Xposed ( 290): GB:Product: D5503
I/Xposed ( 290): GB:Device manufacturer: Sony
I/Xposed ( 290): GB:Device brand: Sony
I/Xposed ( 290): GB:Device model: Xperia Z1 Compact
I/Xposed ( 290): GB:Device type: phone
I/Xposed ( 290): GB:Is MTK device: false
I/Xposed ( 290): GB:Is Xperia device: false
I/Xposed ( 290): GB:Is Moto XT device: false
I/Xposed ( 290): GB:Has Lenovo custom UI: false
I/Xposed ( 290): GB:Has telephony support: true
I/Xposed ( 290): GB:Has Gemini support: false
I/Xposed ( 290): GB:Android SDK: 21
I/Xposed ( 290): GB:Android Release: 5.0.2
I/Xposed ( 290): GB:ROM: pac_amami-userdebug 5.0.2 LRX22G eng.oshmoun.20150313.192904 test-keys
E/Xposed ( 290): java.lang.NoSuchMethodError: com.android.internal.policy.impl.PhoneWindowManager#handleLongPressOnHome()#exact
E/Xposed ( 290):	at de.robv.android.xposed.XposedHelpers.findMethodExact(XposedHelpers.java:179)
E/Xposed ( 290):	at de.robv.android.xposed.XposedHelpers.findAndHookMethod(XposedHelpers.java:129)
E/Xposed ( 290):	at com.ceco.lollipop.gravitybox.ModHwKeys.initZygote(ModHwKeys.java:781)
E/Xposed ( 290):	at com.ceco.lollipop.gravitybox.GravityBox.initZygote(GravityBox.java:65)
E/Xposed ( 290):	at de.robv.android.xposed.XposedBridge.loadModule(XposedBridge.java:470)
E/Xposed ( 290):	at de.robv.android.xposed.XposedBridge.loadModules(XposedBridge.java:419)
E/Xposed ( 290):	at de.robv.android.xposed.XposedBridge.main(XposedBridge.java:105)
I/Xposed ( 290): Loading modules from /data/app/com.pyler.enablecmcallrec-2/base.apk
I/Xposed ( 290): Loading class com.pyler.enablecmcallrec.EnableCallRecording
I/Xposed ( 290): Loading modules from /data/app/de.defim.apk.bootmanager-1/base.apk
I/Xposed ( 290): Loading class de.defim.apk.bootmanager.Xposed
I/Xposed ( 290): [BootManager] initialized
I/Xposed ( 290): Loading class de.defim.apk.bootmanager.Xcheck
I/Xposed ( 290): Loading modules from /data/app/com.blargh.bouncybox-1/base.apk
I/Xposed ( 290): Loading class com.blargh.bouncybox.Module
I/Xposed ( 290): Loading modules from /data/app/com.pyler.xinstaller-2/base.apk
I/Xposed ( 290): Loading class com.pyler.xinstaller.XInstaller
I/Xposed ( 290): Loading modules from /data/app/com.mohammadag.smoothsystemprogressbars-1/base.apk
I/Xposed ( 290): Loading class com.mohammadag.smoothsystemprogressbars.SmoothSystemPBar
I/Xposed ( 769): PBMC: Defining system hooks
E/Xposed ( 769): java.lang.NoClassDefFoundError: Failed resolution of: Lcom/android/server/input/InputWindowHandle;
E/Xposed ( 769):	at xeed.xposed.cbppmod.PhysicalButtonMod.handleLoadPackage(PhysicalButtonMod.java:96)
E/Xposed ( 769):	at de.robv.android.xposed.IXposedHookLoadPackage$Wrapper.handleLoadPackage(IXposedHookLoadPackage.java:20)
E/Xposed ( 769):	at de.robv.android.xposed.callbacks.XC_LoadPackage.call(XC_LoadPackage.java:34)
E/Xposed ( 769):	at de.robv.android.xposed.callbacks.XCallback.callAll(XCallback.java:70)
E/Xposed ( 769):	at de.robv.android.xposed.XposedBridge$3$1.beforeHookedMethod(XposedBridge.java:250)
E/Xposed ( 769):	at de.robv.android.xposed.XposedBridge.handleHookedMethod(XposedBridge.java:636)
E/Xposed ( 769):	at com.android.server.SystemServer.startBootstrapServices(Unknown Source)
E/Xposed ( 769):	at com.android.server.SystemServer.run(SystemServer.java:282)
E/Xposed ( 769):	at com.android.server.SystemServer.main(SystemServer.java:185)
E/Xposed ( 769):	at java.lang.reflect.Method.invoke(Native Method)
E/Xposed ( 769):	at java.lang.reflect.Method.invoke(Method.java:372)
E/Xposed ( 769):	at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:898)
E/Xposed ( 769):	at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:693)
E/Xposed ( 769):	at de.robv.android.xposed.XposedBridge.main(XposedBridge.java:117)
E/Xposed ( 769): Caused by: java.lang.ClassNotFoundException: Didn't find class "com.android.server.input.InputWindowHandle" on path: DexPathList[[zip file "/data/app/xeed.xposed.cbppmod-1/base.apk"],nativeLibraryDirectories=[/vendor/lib, /system/lib]]
E/Xposed ( 769):	at dalvik.system.BaseDexClassLoader.findClass(BaseDexClassLoader.java:56)
E/Xposed ( 769):	at java.lang.ClassLoader.loadClass(ClassLoader.java:511)
E/Xposed ( 769):	at java.lang.ClassLoader.loadClass(ClassLoader.java:469)
E/Xposed ( 769):	... 14 more
E/Xposed ( 769):	Suppressed: java.lang.ClassNotFoundException: Didn't find class "com.android.server.input.InputWindowHandle" on path: DexPathList[[zip file "/system/framework/XposedBridge.jar"],nativeLibraryDirectories=[/vendor/lib, /system/lib]]
E/Xposed ( 769):	at dalvik.system.BaseDexClassLoader.findClass(BaseDexClassLoader.java:56)
E/Xposed ( 769):	at java.lang.ClassLoader.loadClass(ClassLoader.java:511)
E/Xposed ( 769):	at java.lang.ClassLoader.loadClass(ClassLoader.java:504)
E/Xposed ( 769):	... 15 more
E/Xposed ( 769):	Suppressed: java.lang.ClassNotFoundException: com.android.server.input.InputWindowHandle
E/Xposed ( 769):	at java.lang.Class.classForName(Native Method)
E/Xposed ( 769):	at java.lang.BootClassLoader.findClass(ClassLoader.java:781)
E/Xposed ( 769):	at java.lang.BootClassLoader.loadClass(ClassLoader.java:841)
E/Xposed ( 769):	at java.lang.ClassLoader.loadClass(ClassLoader.java:504)
E/Xposed ( 769):	... 16 more
E/Xposed ( 769):	Caused by: java.lang.NoClassDefFoundError: Class not found using the boot class loader; no stack available
I/Xposed ( 769): Amplify: Version 3.0.5
I/Xposed ( 769): Amplify: Attempting 19to20 AlarmHook
I/Xposed ( 769): Amplify: Successful 19to20 AlarmHook
I/Xposed ( 769): Amplify: Attempting 21 WakeLockHook
I/Xposed ( 769): Amplify: Successful 21 WakeLockHook
I/Xposed ( 769): Amplify: Service Blocking Status: false
I/Xposed ( 769): Amplify: Service Blocking is disabled.

basically, another class is not getting hooked properly ;)