[HTC One SV] Modding.MyMind:
Hey bud, hope you were able to resolve the issue. Anyways, I fixed the apktool flash zip. Was missing folders and of course, due to those missing I failed to implement them in my script. Human error none the less. Will upload the flash zip for Apktool when I get the chance (meaning - when I have WiFi and not 3G). Here is the script code so you can verify that the stuff needed is and will be implemented into the internal sdcard. Don't know why I failed to include it originally. Guess I just had too much on my mind and slipped up lol.

ui_print("****************************************");
ui_print("* Created by Modding.MyMind *");
ui_print("****************************************");
ui_print("");
ui_print("");

show_progress(1.000000, 0);
ui_print("Mounting filesystems...");
run_program("/sbin/busybox", "mount", "/data");
run_program("/sbin/busybox", "mount", "/sdcard");
set_progress(0.100000);

# Delete old files that may interfere.
ui_print("Preparing install...");
delete("/data/dalvik-cache/data@app@per.pqy.apktool-1.apk@classes.dex");
delete("/data/dalvik-cache/data@app@per.pqy.apktool-2.apk@classes.dex");
set_progress(0.200000);

ui_print("Extracting files...");
package_extract_dir("data", "/data");
package_extract_dir("sdcard", "/sdcard");
set_progress(0.300000);

ui_print("Setting sdcard Apktool permissions");
set_perm(1000, 1015, 0575, "/sdcard/apktool");
set_progress(0.400000);

ui_print("Setting data Apktool Permissions");
set_perm(1000, 1000, 0644, "/data/app/per.pqy.apktool-1.apk");
set_perm(1000, 1000, 0755, "/data/data/per.pqy.apktool");
set_perm_recursive(1000, 1000, 0755, 0755, "/data/data/per.pqy.apktool/lib");
set_perm_recursive(1000, 1000, 0771, 0600, "/data/data/per.pqy.apktool/cache");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/cache/com.android.renderscript.cache");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/?");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/?/apktool");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/?/apktool/framework");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/bin");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/bin");
set_perm_recursive(1000, 1000, 0755, 0755, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/lib");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/lib/arm");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/lib/arm/headless");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/lib/arm/server");
set_perm_recursive(1000, 1000, 0771, 0771, "/data/data/per.pqy.apktool/lix/jvm/java-7-openjdk-armel/jre/lib/arm/jli");
set_perm_recursive(1000, 1000, 0771, 0660, "/data/data/per.pqy.apktool/shared_prefs");
set_progress(0.500000);
set_progress(0.700000);

# Unmounting filesystems...
run_program("/sbin/busybox", "umount", "/data");
run_program("/sbin/busybox", "umount", "/sdcard");
set_progress(0.900000);

set_progress(1.000000);
ui_print("****************************************");
ui_print("* Install Complete! *");
ui_print("****************************************");