[Android Software/Hacking General [Developers Only]] karamelos:
Hi for me auto_patcher is able to patch your rom

ROOT= /home/xyz/android-rom-apk/autopatcherv2.5.0
TOOL= /home/xyz/android-rom-apk/autopatcherv2.5.0/patch_tools.tgz
ROM= /home/xyz/android-rom-apk/Rom/cm-10.1-20130112-NIGHTLY-p990.zip
ROMX= /home/xyz/android-rom-apk/Rom/cm-10.1-20130112-NIGHTLY-p990.zip

### verify tools ###
/usr/bin/patch
/bin/tar
/usr/bin/jar
/usr/bin/java
/bin/cpio

### verify ROM ###
### running ./auto_patcher /home/xyz/android-rom-apk/Rom/cm-10.1-20130112-NIGHTLY-p990.zip openpdroid
PATH= /home/xyz/android-rom-apk/autopatcherv2.5.0/tmp20130114121726:/home/xyz/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/xyz/android-sdk/android-sdk-linux/platform-tools:/home/xyz/android-sdk/android-sdk-linux/tools:/home/xyz/bin:/opt/java/64/jdk1.6.0_34/bin

### unzip patch tools ###

### unzip patch patches ###

... result of ROM check: RIL= LGEInfineon

### probe rom type ###
#### Standard Build Query ####
# VER= v2.5.0
# OS= linux-gnu 64bit
# VID= 4.2.1
# PID= openpdroid
# MID= cm_p990-userdebug
# RID= cm
# ANDR= 4.2
# BDID= 20130112
# DID= p990
# BID= 20130109
### DELETE FILES=
### COPY FILES= system/media/PDroid.jpeg
### JAR FILES= system/framework/framework.jar system/framework/core.jar system/framework/services.jar system/framework/telephony-common.jar
### APK FILES= system/app/Mms.apk
### IMG FILES=
### TXT FILES=

### unzip rom ###

### create updater script ###

... using Clockworkmod installer ...
# generated updater-script
ui_print("");
ui_print("");
ui_print("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~");
ui_print("* *");
ui_print("* * The Auto-Patcher * *");
ui_print("* * * * * *");
ui_print("* * by mateor * *");
ui_print("* *");
ui_print("~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~");
ui_print("");
ui_print(" Attention");
ui_print(" ************************************");
ui_print("");
ui_print(" There is nothing that can go wrong here");
ui_print(" that reflashing your ROM won't fix.");
ui_print("");
mount("ext4", "EMMC", "/dev/block/mmcblk0p1", "/system");
package_extract_dir("system", "/system");
set_perm_recursive(0, 0, 0755, 0644, "/system");
set_perm_recursive(0, 0, 0755, 0755, "/system/addon.d");
set_perm_recursive(0, 2000, 0755, 0755, "/system/bin");
set_perm(0, 3003, 02750, "/system/bin/netcfg");
set_perm(0, 3004, 02755, "/system/bin/ping");
set_perm(0, 2000, 06750, "/system/bin/run-as");
set_perm(1002, 1002, 0440, "/system/etc/dbus.conf");
set_perm(1014, 2000, 0550, "/system/etc/dhcpcd/dhcpcd-run-hooks");
set_perm_recursive(0, 2000, 0755, 0755, "/system/etc/init.d");
set_perm(0, 0, 0755, "/system/etc/init.d");
set_perm(0, 2000, 0550, "/system/etc/init.goldfish.sh");
set_perm_recursive(0, 0, 0755, 0555, "/system/etc/ppp");
set_perm_recursive(0, 2000, 0755, 0644, "/system/vendor");
set_perm(0, 0, 0644, "/system/vendor/etc/audio_effects.conf");
set_perm(0, 0, 0644, "/system/vendor/lib/libbt-vendor.so");
set_perm_recursive(0, 2000, 0755, 0755, "/system/xbin");
set_perm(0, 0, 06755, "/system/xbin/librank");
set_perm(0, 0, 06755, "/system/xbin/procmem");
set_perm(0, 0, 06755, "/system/xbin/procrank");
set_perm(0, 0, 06755, "/system/xbin/su");
unmount("/system");
ui_print(" .");
ui_print(" .");
ui_print(" done!");

### create restore.zip ###

### decompile system files ###

... decompile framework.jar ...

... extract preloaded-classes ...
décompressée: preloaded-classes

... decompile core.jar ...

... decompile services.jar ...

... decompile telephony-common.jar ...
décompressée: system/framework/framework-res.apk

... installing framework files ...

... decompile Mms.apk ...

### copy patch openpdroid/4.2/cm/20130109 ###

... copying system/media/PDroid.jpeg ...
«patches/openpdroid/4.2/cm/20130109/system/media/PDroid.jpeg» -> «./system/media/PDroid.jpeg»

... overwriting ContentResolver.smali ...

### jar patch openpdroid/4.2/cm/20130109 ###

... apply framework.patch ...

... apply preloaded.patch ...
GARBAGE= tmp/system/framework/framework.jar.out/smali/android/net/wifi/WifiStateMachine.smali.orig
GARBAGE=

... apply core.patch ...
GARBAGE=
GARBAGE=

... apply services.patch ...
GARBAGE=
GARBAGE=

... apply telephony-common.patch ...
Reversed (or previously applied) patch detected! Skipping patch.
15 out of 15 hunks ignored -- saving rejects to file 'smali/com/android/internal/telephony/RIL$RILSender.smali.rej'
GARBAGE=
GARBAGE= tmp/system/framework/telephony-common.jar.out/smali/com/android/internal/telephony/RIL$RILSender.smali.rej

### apk patch openpdroid/4.2/cm/20130109 ###

... apply Mms.apk.patch ...
GARBAGE=
GARBAGE=

### rebuild jar ###

... rebuild framework.jar ...
ajout : classes.dex (entrée = 8193408) (sortie = 3368305) (58% compressés)
ajout : preloaded-classes (entrée = 96019) (sortie = 16111) (83% compressés)

... rebuild core.jar ...
ajout : classes.dex (entrée = 2564680) (sortie = 1084431) (57% compressés)

... rebuild services.jar ...
ajout : classes.dex (entrée = 2102524) (sortie = 947786) (54% compressés)

... rebuild telephony-common.jar ...
ajout : classes.dex (entrée = 1041136) (sortie = 421096) (59% compressés)

### rebuild apk ###

... rebuild Mms.apk ...
I: Checking whether sources has changed...
I: Smaling...
I: Checking whether resources has changed...
I: Building resources...
I: Building apk file...

### create update-cm-p990-20130112-openpdroid.zip ###
manifest ajouté
ajout : system/framework/framework.jar (entrée = 3385001) (sortie = 3362639) (0% compressés)
ajout : system/framework/core.jar (entrée = 1087671) (sortie = 1081436) (0% compressés)
ajout : system/framework/services.jar (entrée = 948245) (sortie = 946538) (0% compressés)
ajout : system/framework/telephony-common.jar (entrée = 421555) (sortie = 419677) (0% compressés)
ajout : system/app/Mms.apk (entrée = 2273816) (sortie = 2141905) (5% compressés)
ajout : system/media/PDroid.jpeg (entrée = 26898) (sortie = 25744) (4% compressés)
entrée META-INF/ ignorée
ajout : META-INF/com/ (entrée = 0) (sortie = 0) (0% stocké)
ajout : META-INF/com/google/ (entrée = 0) (sortie = 0) (0% stocké)
ajout : META-INF/com/google/android/ (entrée = 0) (sortie = 0) (0% stocké)
ajout : META-INF/com/google/android/update-binary (entrée = 234196) (sortie = 150762) (35% compressés)
ajout : META-INF/com/google/android/updater-script (entrée = 2084) (sortie = 482) (76% compressés)

See your config

Patch:

restore-cm-p990-20130112.zip

update-cm-p990-20130112-openpdroid.zip