[Eee Pad Transformer Q&A, Help & Troubleshooting] aligatro2010:
Here is a list of my apk. I would give you md5 checksums for each but stock firmware doesn't have it. Compare sizes if you have the same firmware. Install terminal emulator from market do cd /system/app and then ls -l

My firmware: US 9.2.1.11

Also, tell us which rom you downloaded.

-rw-r--r-- root root 7254338 2012-02-24 12:31 AWS.apk
-rw-r--r-- root root 222316 2008-08-01 08:00 AppLocker.apk
-rw-r--r-- root root 74768 2008-08-01 08:00 AppLocker.odex
-rw-r--r-- root root 17164 2012-02-24 12:31 ApplicationsProvider.apk
-rw-r--r-- root root 24208 2012-02-24 12:31 ApplicationsProvider.odex
-rw-r--r-- root root 632249 2008-08-01 08:00 AsusDayScene.apk
-rw-r--r-- root root 73552 2008-08-01 08:00 AsusDayScene.odex
-rw-r--r-- root root 2829373 2012-02-24 12:31 AsusReader.apk
-rw-r--r-- root root 1442040 2012-02-24 12:31 AsusReader.odex
-rw-r--r-- root root 267925 2012-02-24 12:31 AsusSetupWizard.apk
-rw-r--r-- root root 21880 2012-02-24 12:31 AsusSetupWizard.odex
-rw-r--r-- root root 104477 2008-08-01 08:00 BackupRestoreConfirmation.apk
-rw-r--r-- root root 9176 2008-08-01 08:00 BackupRestoreConfirmation.odex
-rw-r--r-- root root 328365 2012-02-24 12:31 Bluetooth.apk
-rw-r--r-- root root 231408 2012-02-24 12:31 Bluetooth.odex
-rw-r--r-- root root 4371822 2008-08-01 08:00 Books.apk
-rw-r--r-- root root 1720957 2012-02-24 12:31 Browser.apk
-rw-r--r-- root root 780608 2012-02-24 12:31 Browser.odex
-rw-r--r-- root root 143452 2012-02-24 12:31 CMClient.apk
-rw-r--r-- root root 714376 2012-02-24 12:31 CMClient.odex
-rw-r--r-- root root 91317 2012-02-24 12:31 Calculator.apk
-rw-r--r-- root root 131808 2012-02-24 12:31 Calculator.odex
-rw-r--r-- root root 749785 2012-02-24 12:31 Calendar.apk
-rw-r--r-- root root 657696 2012-02-24 12:31 Calendar.odex
-rw-r--r-- root root 68699 2012-02-24 12:31 CalendarProvider.apk
-rw-r--r-- root root 264360 2012-02-24 12:31 CalendarProvider.odex
-rw-r--r-- root root 2255899 2012-02-24 12:31 Camera.apk
-rw-r--r-- root root 317888 2012-02-24 12:31 Camera.odex
-rw-r--r-- root root 109101 2012-02-24 12:31 CertInstaller.apk
-rw-r--r-- root root 44712 2012-02-24 12:31 CertInstaller.odex
-rw-r--r-- root root 179585 2008-08-01 08:00 ChromeBookmarksSyncAdapter.apk
-rw-r--r-- root root 2003660 2012-02-24 12:31 Contacts.apk
-rw-r--r-- root root 2081984 2012-02-24 12:32 Contacts.odex
-rw-r--r-- root root 47918 2012-02-24 12:32 ContactsProvider.apk
-rw-r--r-- root root 1287464 2012-02-24 12:32 ContactsProvider.odex
-rw-r--r-- root root 167775 2012-02-24 12:32 DMClient.apk
-rw-r--r-- root root 668904 2012-02-24 12:32 DMClient.odex
-rw-r--r-- root root 988827 2012-02-24 12:32 DataBackup.apk
-rw-r--r-- root root 153864 2012-02-24 12:32 DataBackup.odex
-rw-r--r-- root root 8638 2012-02-24 12:32 DefaultContainerService.apk
-rw-r--r-- root root 14512 2012-02-24 12:32 DefaultContainerService.odex
-rw-r--r-- root root 438671 2012-02-24 12:32 DeskClock.apk
-rw-r--r-- root root 93968 2012-02-24 12:32 DeskClock.odex
-rw-r--r-- root root 63769 2012-02-24 12:32 Dictionary.apk
-rw-r--r-- root root 431312 2012-02-24 12:32 Dictionary.odex
-rw-r--r-- root root 159322 2012-02-24 12:32 DownloadProvider.apk
-rw-r--r-- root root 175856 2012-02-24 12:32 DownloadProvider.odex
-rw-r--r-- root root 143812 2012-02-24 12:32 DownloadProviderUi.apk
-rw-r--r-- root root 41048 2012-02-24 12:32 DownloadProviderUi.odex
-rw-r--r-- root root 24774 2012-02-24 12:32 DrmProvider.apk
-rw-r--r-- root root 12784 2012-02-24 12:32 DrmProvider.odex
-rw-r--r-- root root 2063139 2012-02-24 12:32 Email.apk
-rw-r--r-- root root 1962264 2012-02-24 12:32 Email.odex
-rw-r--r-- root root 35511 2012-02-24 12:32 EmailWidget.apk
-rw-r--r-- root root 9376 2012-02-24 12:32 EmailWidget.odex
-rw-r--r-- root root 157088 2012-02-24 12:32 Exchange.apk
-rw-r--r-- root root 1394744 2012-02-24 12:32 Exchange.odex
-rw-r--r-- root root 850288 2008-08-01 08:00 FaceLock.apk
-rw-r--r-- root root 17450 2012-02-24 12:32 FacebookPoster.apk
-rw-r--r-- root root 25808 2012-02-24 12:32 FacebookPoster.odex
-rw-r--r-- root root 365536 2008-08-01 08:00 FileManager2.apk
-rw-r--r-- root root 210048 2008-08-01 08:00 FileManager2.odex
-rw-r--r-- root root 412904 2008-08-01 08:00 Galaxy4.apk
-rw-r--r-- root root 18608 2008-08-01 08:00 Galaxy4.odex
-rw-r--r-- root root 1469566 2008-08-01 08:00 Gallery2.apk
-rw-r--r-- root root 843104 2008-08-01 08:00 Gallery2.odex
-rw-r--r-- root root 1543855 2008-08-01 08:00 GenieWidget.apk
-rw-r--r-- root root 2833377 2012-02-24 12:32 Gmail.apk
-rw-r--r-- root root 84610 2012-02-24 12:32 GoogleBackupTransport.apk
-rw-r--r-- root root 143789 2008-08-01 08:00 GoogleCalendarSyncAdapter.apk
-rw-r--r-- root root 158309 2012-02-24 12:32 GoogleContactsSyncAdapter.apk
-rw-r--r-- root root 254095 2012-02-24 12:32 GoogleFeedback.apk
-rw-r--r-- root root 4051474 2012-02-24 12:32 GoogleLoginService.apk
-rw-r--r-- root root 97883 2012-02-24 12:32 GooglePartnerSetup.apk
-rw-r--r-- root root 718816 2012-02-24 12:32 GoogleQuickSearchBox.apk
-rw-r--r-- root root 2931560 2012-02-24 12:32 GoogleServicesFramework.apk
-rw-r--r-- root root 4336443 2008-08-01 08:00 GoogleTTS.apk
-rw-r--r-- root root 8350 2012-02-24 12:32 HTMLViewer.apk
-rw-r--r-- root root 6968 2012-02-24 12:32 HTMLViewer.odex
-rw-r--r-- root root 39965 2012-02-24 12:32 HoloSpiralWallpaper.apk
-rw-r--r-- root root 21496 2012-02-24 12:32 HoloSpiralWallpaper.odex
-rw-r--r-- root root 7873 2008-08-01 08:00 KeyChain.apk
-rw-r--r-- root root 27824 2008-08-01 08:00 KeyChain.odex
-rw-r--r-- root root 111768 2012-02-24 12:32 Keyboard.apk
-rw-r--r-- root root 26704 2012-02-24 12:32 Keyboard.odex
-rw-r--r-- root root 3386305 2012-02-24 12:32 Kindle-OEM.apk
-rw-r--r-- root root 125646 2008-08-01 08:00 LatinImeDictionaryPack.apk
-rw-r--r-- root root 6157306 2012-02-24 12:32 LatinImeGoogle.apk
-rw-r--r-- root root 19011834 2012-02-24 12:32 Launcher2.apk
-rw-r--r-- root root 513960 2012-02-24 12:32 Launcher2.odex
-rw-r--r-- root root 1140540 2008-08-01 08:00 LiveWallpapers.apk
-rw-r--r-- root root 86056 2008-08-01 08:00 LiveWallpapers.odex
-rw-r--r-- root root 128368 2012-02-24 12:32 LiveWallpapersPicker.apk
-rw-r--r-- root root 23088 2012-02-24 12:32 LiveWallpapersPicker.odex
-rw-r--r-- root root 1412636 2012-02-24 12:32 MEar.apk
-rw-r--r-- root root 7522186 2012-02-24 12:32 Maps.apk
-rw-r--r-- root root 13351 2012-02-24 12:32 MarketUpdater.apk
-rw-r--r-- root root 21140 2012-02-24 12:32 MediaProvider.apk
-rw-r--r-- root root 127008 2012-02-24 12:32 MediaProvider.odex
-rw-r--r-- root root 500443 2012-02-24 12:32 MediaUploader.apk
-rw-r--r-- root root 950655 2008-08-01 08:00 Mms.apk
-rw-r--r-- root root 601072 2008-08-01 08:00 Mms.odex
-rw-r--r-- root root 5240716 2012-02-24 12:32 Music2.apk
-rw-r--r-- root root 59442 2008-08-01 08:00 MusicFX.apk
-rw-r--r-- root root 84056 2008-08-01 08:00 MusicFX.odex
-rw-r--r-- root root 8147249 2012-02-24 12:32 MyCloud.apk
-rw-r--r-- root root 530666 2008-08-01 08:00 MyNet.apk
-rw-r--r-- root root 612680 2008-08-01 08:00 MyNet.odex
-rw-r--r-- root root 1127878 2012-02-24 12:32 MyWater.apk
-rw-r--r-- root root 59440 2012-02-24 12:32 MyWater.odex
-rw-r--r-- root root 3724830 2008-08-01 08:00 MyWater2.apk
-rw-r--r-- root root 118808 2008-08-01 08:00 MyWater2.odex
-rw-r--r-- root root 3584302 2008-08-01 08:00 MyZine.apk
-rw-r--r-- root root 68152 2008-08-01 08:00 MyZine.odex
-rw-r--r-- root root 1448847 2012-02-24 12:32 NVIDIATegraZone.apk
-rw-r--r-- root root 66275 2012-02-24 12:32 Netflix.apk
-rw-r--r-- root root 270653 2012-02-24 12:32 NetworkLocation.apk
-rw-r--r-- root root 44092 2012-02-24 12:32 PCSyncLauncher.apk
-rw-r--r-- root root 18968 2012-02-24 12:32 PCSyncLauncher.odex
-rw-r--r-- root root 3114849 2008-08-01 08:00 PRAndroidGB.apk
-rw-r--r-- root root 182141 2012-02-24 12:32 PackageInstaller.apk
-rw-r--r-- root root 29696 2012-02-24 12:32 PackageInstaller.odex
-rw-r--r-- root root 2177616 2012-02-24 12:32 Phone.apk
-rw-r--r-- root root 606904 2012-02-24 12:33 Phone.odex
-rw-r--r-- root root 3708455 2012-02-24 12:33 Phonesky.apk
-rw-r--r-- root root 1952535 2012-02-24 12:33 PixWe.apk
-rw-r--r-- root root 5196107 2008-08-01 08:00 PlusOne.apk
-rw-r--r-- root root 4850456 2012-02-24 12:33 PolarisOffice.apk
-rw-r--r-- root root 36749 2008-08-01 08:00 QuickSearch.apk
-rw-r--r-- root root 4584 2008-08-01 08:00 QuickSearch.odex
-rw-r--r-- root root 6335362 2012-02-24 12:33 Settings.apk
-rw-r--r-- root root 1115776 2012-02-24 12:33 Settings.odex
-rw-r--r-- root root 20357 2012-02-24 12:33 SettingsProvider.apk
-rw-r--r-- root root 60640 2012-02-24 12:33 SettingsProvider.odex
-rw-r--r-- root root 2464776 2012-02-24 12:33 SetupWizard.apk
-rw-r--r-- root root 2599 2008-08-01 08:00 SharedStorageBackup.apk
-rw-r--r-- root root 4272 2008-08-01 08:00 SharedStorageBackup.odex
-rw-r--r-- root root 100014 2012-02-24 12:33 SoundRecorder.apk
-rw-r--r-- root root 55472 2012-02-24 12:33 SoundRecorder.odex
-rw-r--r-- root root 4186610 2012-02-24 12:33 StrAsus.apk
-rw-r--r-- root root 288315 2012-02-24 12:33 Street.apk
-rw-r--r-- root root 9855809 2012-02-24 12:33 Supernote.apk
-rw-r--r-- root root 1285972 2012-02-24 12:33 SystemUI.apk
-rw-r--r-- root root 428832 2012-02-24 12:33 SystemUI.odex
-rw-r--r-- root root 222557 2008-08-01 08:00 TagGoogle.apk
-rw-r--r-- root root 2240693 2012-02-24 12:33 Talk.apk
-rw-r--r-- root root 181581 2008-08-01 08:00 TaskManager.apk
-rw-r--r-- root root 47040 2008-08-01 08:00 TaskManager.odex
-rw-r--r-- root root 13595 2012-02-24 12:33 TelephonyProvider.apk
-rw-r--r-- root root 93872 2012-02-24 12:33 TelephonyProvider.odex
-rw-r--r-- root root 79269 2012-02-24 12:33 UpdateLauncher.apk
-rw-r--r-- root root 32784 2012-02-24 12:33 UpdateLauncher.odex
-rw-r--r-- root root 3522 2012-02-24 12:33 UserDictionaryProvider.apk
-rw-r--r-- root root 14912 2012-02-24 12:33 UserDictionaryProvider.odex
-rw-r--r-- root root 736530 2012-02-24 12:33 Vibe2.apk
-rw-r--r-- root root 183752 2012-02-24 12:33 Vibe2.odex
-rw-r--r-- root root 5860398 2012-02-24 12:33 VideoEditorGoogle.apk
-rw-r--r-- root root 1450517 2012-02-24 12:33 Videos.apk
-rw-r--r-- root root 2417532 2012-02-24 12:33 VoiceSearch.apk
-rw-r--r-- root root 46613 2008-08-01 08:00 VpnDialogs.apk
-rw-r--r-- root root 9224 2008-08-01 08:00 VpnDialogs.odex
-rw-r--r-- root root 6162464 2012-02-24 12:33 Weather.apk
-rw-r--r-- root root 104928 2012-02-24 12:33 Weather.odex
-rw-r--r-- root root 1858710 2012-02-24 12:33 XT9IME.apk
-rw-r--r-- root root 564856 2012-02-24 12:33 XT9IME.odex
-rw-r--r-- root root 3286905 2008-08-01 08:00 YouTube.apk
-rw-r--r-- root root 8909 2008-08-01 08:00 YoutubeSearch.apk
-rw-r--r-- root root 1856 2008-08-01 08:00 YoutubeSearch.odex
-rw-r--r-- root root 2776431 2012-02-24 12:33 ZinioReader.apk
-rw-r--r-- root root 14653 2012-02-24 12:33 ZinioSettingsProvider.apk
-rw-r--r-- root root 794315 2008-08-01 08:00 talkback.apk