[Motorola Atrix 2] jimbridgman:
I have successfully deodexed this ROM, I am attemping to cook.

/system/app listing:

-rw-r--r-- 1 root root 356608 2011-12-22 18:17 AABSync.apk

-rw-r--r-- 1 root root 79149 2011-12-22 18:17 AccountAndSyncSettings.apk

-rw-r--r-- 1 root root 44428 2011-12-22 18:17 AdminFeedNotifier.apk

-rw-r--r-- 1 root root 13873 2011-12-22 18:17 AdService.apk

-rw-r--r-- 1 root root 16358 2011-12-22 18:17 ApplicationsProvider.apk

-rw-r--r-- 1 root root 715672 2011-12-22 18:17 ArcVideoEditorLite.apk

-rw-r--r-- 1 root root 5362 2011-12-22 18:17 AtCmd.apk

-rw-r--r-- 1 root root 41720 2011-12-22 18:17 AttDrmContent.apk

-rw-r--r-- 1 root root 41884 2011-12-22 18:17 AudioEffectSettings.apk

-rw-r--r-- 1 root root 151884 2011-12-22 18:17 BatteryManager.apk

-rw-r--r-- 1 root root 15038 2011-12-22 18:17 BatteryReport.apk

-rw-r--r-- 1 root root 72915 2011-12-22 18:17 Bluetooth.apk

-rw-r--r-- 1 root root 20823 2011-12-22 18:17 BluetoothMot.apk

-rw-r--r-- 1 root root 9240 2011-12-22 18:17 blur_activesync.apk

-rw-r--r-- 1 root root 1006250 2011-12-22 18:17 BlurAlarmClock.apk

-rw-r--r-- 1 root root 366871 2011-12-22 18:17 BlurCalendar.apk

-rw-r--r-- 1 root root 133973 2011-12-22 18:17 BlurCalendarProvider.apk

-rw-r--r-- 1 root root 1958429 2011-12-22 18:17 BlurCamera.apk

-rw-r--r-- 1 root root 21012 2011-12-22 18:17 BlurChooser.apk

-rw-r--r-- 1 root root 615486 2011-12-22 18:17 BlurContacts.apk

-rw-r--r-- 1 root root 13601 2011-12-22 18:17 BlurContactsSync.apk

-rw-r--r-- 1 root root 688846 2011-12-22 18:17 BlurDialer.apk

-rw-r--r-- 1 root root 14495 2011-12-22 18:17 blur_email.apk

-rw-r--r-- 1 root root 578724 2011-12-22 18:17 BlurEmail.apk

-rw-r--r-- 1 root root 21539 2011-12-22 18:17 BlurEmailEngine.apk

-rw-r--r-- 1 root root 8704 2011-12-22 18:17 blur_facebook.apk

-rw-r--r-- 1 root root 11131 2011-12-22 18:17 blur_fixedemail.apk

-rw-r--r-- 1 root root 8246 2011-12-22 18:17 blur_flickr.apk

-rw-r--r-- 1 root root 2854997 2011-12-22 18:17 BlurGallery.apk

-rw-r--r-- 1 root root 22355606 2011-12-22 18:17 BlurHome2.apk

-rw-r--r-- 1 root root 10210 2011-12-22 18:17 blur_lastfm.apk

-rw-r--r-- 1 root root 8584 2011-12-22 18:17 blur_linkedin.apk

-rw-r--r-- 1 root root 3795451 2011-12-22 18:17 BlurMusic.apk

-rw-r--r-- 1 root root 8831 2011-12-22 18:17 blur_myspace.apk

-rw-r--r-- 1 root root 12499 2011-12-22 18:17 blur_orkut.apk

-rw-r--r-- 1 root root 1678482 2011-12-22 18:17 BlurPhone.apk

-rw-r--r-- 1 root root 12355 2011-12-22 18:17 blur_photobucket.apk

-rw-r--r-- 1 root root 10223 2011-12-22 18:17 blur_picasa.apk

-rw-r--r-- 1 root root 47241 2011-12-22 18:17 blur-services.apk

-rw-r--r-- 1 root root 12502 2011-12-22 18:17 blur_skyrock.apk

-rw-r--r-- 1 root root 14581 2011-12-22 18:17 BlurSNMessagingEngine.apk

-rw-r--r-- 1 root root 10799 2011-12-22 18:17 blur_twitter.apk

-rw-r--r-- 1 root root 57151 2011-12-22 18:17 BlurUpdater.apk

-rw-r--r-- 1 root root 10283 2011-12-22 18:17 blur_yahoo.apk

-rw-r--r-- 1 root root 11799 2011-12-22 18:17 blur_youtube.apk

-rw-r--r-- 1 root root 105294 2011-12-22 18:17 BookmarksWidget.apk

-rw-r--r-- 1 root root 2230579 2011-12-22 18:17 BooksPhone.apk

-rw-r--r-- 1 root root 600103 2011-12-22 18:17 Browser.apk

-rw-r--r-- 1 root root 71733 2011-12-22 18:17 Calculator.apk

-rw-r--r-- 1 root root 10901 2011-12-22 18:17 CalendarSync.apk

-rw-r--r-- 1 root root 78031 2011-12-22 18:17 CertificateManager.apk

-rw-r--r-- 1 root root 20274 2011-12-22 18:17 CertificateProvider.apk

-rw-r--r-- 1 root root 35604 2011-12-22 18:17 CertInstaller.apk

-rw-r--r-- 1 root root 48119 2011-12-22 18:17 ChargeOnlyMode.apk

-rw-r--r-- 1 root root 96973 2011-12-22 18:17 ClockWidget.apk

-rw-r--r-- 1 root root 41623 2011-12-22 18:17 ContactsData.apk

-rw-r--r-- 1 root root 194218 2011-12-22 18:17 ContactsProvider2_0.apk

-rw-r--r-- 1 root root 435058 2011-12-22 18:17 Conversations.apk

-rw-r--r-- 1 root root 37390 2011-12-22 18:17 DataCollection.apk

-rw-r--r-- 1 root root 19044 2011-12-22 18:17 DataCollectorProvider.apk

-rw-r--r-- 1 root root 8778 2011-12-22 18:17 DataCollectorService.apk

-rw-r--r-- 1 root root 235489 2011-12-22 18:17 DatamanagerApp.apk

-rw-r--r-- 1 root root 12546 2011-12-22 18:17 DataManagerService.apk

-rw-r--r-- 1 root root 11593 2011-12-22 18:17 DefaultContainerService.apk

-rw-r--r-- 1 root root 87784 2011-12-22 18:17 DeviceStatistics.apk

-rw-r--r-- 1 root root 586437 2011-12-22 18:17 DLNA.apk

-rw-r--r-- 1 root root 9817 2011-12-22 18:17 DlnaSystemService.apk

-rw-r--r-- 1 root root 192225 2011-12-22 18:17 DMService.apk

-rw-r--r-- 1 root root 358374 2011-12-22 18:17 Dock.apk

-rw-r--r-- 1 root root 117237 2011-12-22 18:17 DockService.apk

-rw-r--r-- 1 root root 81124 2011-12-22 18:17 DownloadProvider.apk

-rw-r--r-- 1 root root 52935 2011-12-22 18:17 DownloadProviderUi.apk

-rw-r--r-- 1 root root 12344 2011-12-22 18:17 DrmProvider.apk

-rw-r--r-- 1 root root 70084 2011-12-22 18:17 EFEM.apk

-rw-r--r-- 1 root root 126493 2011-12-22 18:17 EncryptionSettings.apk

-rw-r--r-- 1 root root 13660 2011-12-22 18:17 entitlementservice.apk

-rw-r--r-- 1 root root 4238 2011-12-22 18:17 ExtDispService.apk

-rw-r--r-- 1 root root 10493 2011-12-22 18:17 FakeBlurXmppApp.apk

-rw-r--r-- 1 root root 14737 2011-12-22 18:17 FastDormancy.apk

-rw-r--r-- 1 root root 234037 2011-12-22 18:17 FileManager.apk

-rw-r--r-- 1 root root 45846 2011-12-22 18:17 FlashPlayer.apk

-rw-r--r-- 1 root root 32774 2011-12-22 18:17 FMRadioService.apk

-rw-r--r-- 1 root root 694376 2011-12-22 18:17 ForestWallpaper.apk

-rw-r--r-- 1 root root 90197 2011-12-22 18:17 Fota.apk

-rw-r--r-- 1 root root 285497 2011-12-22 18:17 FriendFeed.apk

-rw-r--r-- 1 root root 912459 2011-12-22 18:17 GenieWidget.apk

-rw-r--r-- 1 root root 46049 2011-12-22 18:17 GlobalUnplug.apk

-rw-r--r-- 1 root root 2654414 2011-12-22 18:17 Gmail.apk

-rw-r--r-- 1 root root 38994 2011-12-22 18:17 GoogleBackupTransport.apk

-rw-r--r-- 1 root root 121135 2011-12-22 18:17 GoogleCalendarSyncAdapter.apk

-rw-r--r-- 1 root root 132381 2011-12-22 18:17 GoogleContactsSyncAdapter.apk

-rw-r--r-- 1 root root 122892 2011-12-22 18:17 GoogleFeedback.apk

-rw-r--r-- 1 root root 98363 2011-12-22 18:17 GooglePartnerSetup.apk

-rw-r--r-- 1 root root 632231 2011-12-22 18:17 GoogleQuickSearchBox.apk

-rw-r--r-- 1 root root 2260045 2011-12-22 18:17 GoogleServicesFramework.apk

-rw-r--r-- 1 root root 22115 2011-12-22 18:17 HelpCenter.apk

-rw-r--r-- 1 root root 8384 2011-12-22 18:17 HTMLViewer.apk

-rw-r--r-- 1 root root 15959 2011-12-22 18:17 IndexingService.apk

-rw-r--r-- 1 root root 16508 2011-12-22 18:17 InPocketService.apk

-rw-r--r-- 1 root root 24409 2011-12-22 18:17 KpiLogger.apk

-rw-r--r-- 1 root root 14979624 2011-12-22 18:17 LatinIME.apk

-rw-r--r-- 1 root root 1090180 2011-12-22 18:17 LiveWallpapers.apk

-rw-r--r-- 1 root root 28820 2011-12-22 18:17 LiveWallpapersPicker.apk

-rw-r--r-- 1 root root 37181 2011-12-22 18:17 LocationProxyDmPlugin.apk

-rw-r--r-- 1 root root 151502 2011-12-22 18:17 LocationSensor.apk

-rw-r--r-- 1 root root 214941 2011-12-22 18:17 MagicSmokeWallpapers.apk

-rw-r--r-- 1 root root 5747161 2011-12-22 18:17 Maps.apk

-rw-r--r-- 1 root root 12324 2011-12-22 18:17 MarketUpdater.apk

-rw-r--r-- 1 root root 16603 2011-12-22 18:17 MasterClearErrorReport.apk

-rw-r--r-- 1 root root 127840 2011-12-22 18:17 MediaProvider.apk

-rw-r--r-- 1 root root 1223653 2011-12-22 18:17 MediaSync.apk

-rw-r--r-- 1 root root 273010 2011-12-22 18:17 MediaUploader.apk

-rw-r--r-- 1 root root 138396 2011-12-22 18:17 MessagesWidget.apk

-rw-r--r-- 1 root root 10095 2011-12-22 18:17 Messaging.apk

-rw-r--r-- 1 root root 2830 2011-12-22 18:17 MirrorService.apk

-rw-r--r-- 1 root root 38936 2011-12-22 18:17 MotHstcmd.apk

-rw-r--r-- 1 root root 2836 2011-12-22 18:17 MotoAtCmdEpuPlugin.apk

-rw-r--r-- 1 root root 2899 2011-12-22 18:17 MotoAtCmdPlugin.apk

-rw-r--r-- 1 root root 1402046 2011-12-22 18:17 MotoPhonePortal.apk

-rw-r--r-- 1 root root 31599 2011-12-22 18:17 MotorolaSettingsProvider.apk

-rw-r--r-- 1 root root 7765 2011-12-22 18:17 MSExchangeService.apk

-rw-r--r-- 1 root root 44193 2011-12-22 18:17 MtlrNotifier.apk

-rw-r--r-- 1 root root 20361 2011-12-22 18:17 NetworkLocation.apk

-rw-r--r-- 1 root root 180322 2011-12-22 18:17 NewsWidget.apk

-rw-r--r-- 1 root root 68085 2011-12-22 18:17 oma1motService.apk

-rw-r--r-- 1 root root 31853 2011-12-22 18:17 OMADownload.apk

-rw-r--r-- 1 root root 113893 2011-12-22 18:17 OMAProvisioning.apk

-rw-r--r-- 1 root root 49198 2011-12-22 18:17 OverlaySettingsProvider.apk

-rw-r--r-- 1 root root 38804 2011-12-22 18:17 PackageInstaller.apk

-rw-r--r-- 1 root root 123537 2011-12-22 18:17 PerformanceManager.apk

-rw-r--r-- 1 root root 18496 2011-12-22 18:17 PGPSDownloader.apk

-rw-r--r-- 1 root root 2789 2011-12-22 18:17 PhoneAddons.apk

-rw-r--r-- 1 root root 1194990 2011-12-22 18:17 phoneportal.apk

-rw-r--r-- 1 root root 437713 2011-12-22 18:17 PhotoEditor.apk

-rw-r--r-- 1 root root 451285 2011-12-22 18:17 PhotoWidget.apk

-rw-r--r-- 1 root root 14251 2011-12-22 18:17 PicoTts.apk

-rw-r--r-- 1 root root 30080 2011-12-22 18:17 PolicyMgrProvider.apk

-rw-r--r-- 1 root root 162550 2011-12-22 18:17 PolicyMgrService.apk

-rw-r--r-- 1 root root 1283969 2011-12-22 18:17 PortalApp.apk

-rw-r--r-- 1 root root 34869 2011-12-22 18:17 Preloaded.apk

-rw-r--r-- 1 root root 86886 2011-12-22 18:17 Protips.apk

-rw-r--r-- 1 root root 6451431 2011-12-22 18:17 Quickoffice.apk

-rw-r--r-- 1 root root 30565 2011-12-22 18:17 QuickSms.apk

-rw-r--r-- 1 root root 41039 2011-12-22 18:17 QuickTutorial.apk

-rw-r--r-- 1 root root 822412 2011-12-22 18:17 RichLocation.apk

-rw-r--r-- 1 root root 20269 2011-12-22 18:17 RichTextCommon.apk

-rw-r--r-- 1 root root 12676 2011-12-22 18:17 SARCutBackService.apk

-rw-r--r-- 1 root root 1447458 2011-12-22 18:17 Settings.apk

-rw-r--r-- 1 root root 750031 2011-12-22 18:17 Setup.apk

-rw-r--r-- 1 root root 21119 2011-12-22 18:17 SetupProvider.apk

-rw-r--r-- 1 root root 7201 2011-12-22 18:17 SetupSettings.apk

-rw-r--r-- 1 root root 1015423 2011-12-22 18:17 SetupWizard.apk

-rw-r--r-- 1 root root 23607 2011-12-22 18:17 SimContactAdapter.apk

-rw-r--r-- 1 root root 102236 2011-12-22 18:17 SimManagerInvisible.apk

-rw-r--r-- 1 root root 2446269 2011-12-22 18:17 SmartCarDock.apk

-rw-r--r-- 1 root root 1141444 2011-12-22 18:17 SmartDock.apk

-rw-r--r-- 1 root root 60584 2011-12-22 18:17 SocialMessaging.apk

-rw-r--r-- 1 root root 116605 2011-12-22 18:17 SocialShare.apk

-rw-r--r-- 1 root root 40931 2011-12-22 18:17 SoundRecorder.apk

-rw-r--r-- 1 root root 9435 2011-12-22 18:17 SpellingCheckService.apk

-rw-r--r-- 1 root root 334406 2011-12-22 18:17 StatusWidget.apk

-rw-r--r-- 1 root root 68971 2011-12-22 18:17 StickyNoteWidget.apk

-rw-r--r-- 1 root root 50763 2011-12-22 18:17 Stk.apk

-rw-r--r-- 1 root root 21831 2011-12-22 18:17 StorageMonitorService.apk

-rw-r--r-- 1 root root 302610 2011-12-22 18:17 Street.apk

-rw-r--r-- 1 root root 26710 2011-12-22 18:17 SuggestionsProvider.apk

-rw-r--r-- 1 root root 11945 2011-12-22 18:17 SuggestionsRuleCheckerCore.apk

-rw-r--r-- 1 root root 16985 2011-12-22 18:17 SuggestionsServiceScheduler.apk

-rw-r--r-- 1 root root 754980 2011-12-22 18:17 Superuser.apk

-rw-r--r-- 1 root root 5072802 2011-12-22 18:17 Swype.apk

-rw-r--r-- 1 root root 161457 2011-12-22 18:17 SyncMLAtt.apk

-rw-r--r-- 1 root root 408322 2011-12-22 18:17 SystemUI.apk

-rw-r--r-- 1 root root 1700918 2011-12-22 18:17 Talk2.apk

-rw-r--r-- 1 root root 98788 2011-12-22 18:17 TelephonyProvider.apk

-rw-r--r-- 1 root root 41629 2011-12-22 18:17 Term.apk

-rw-r--r-- 1 root root 69604 2011-12-22 18:17 ToggleWidgets.apk

-rw-r--r-- 1 root root 26710 2011-12-22 18:17 TtsService.apk

-rw-r--r-- 1 root root 9649 2011-12-22 18:17 UniversalInbox.apk

-rw-r--r-- 1 root root 10333 2011-12-22 18:17 Upgrader.apk

-rw-r--r-- 1 root root 46579 2011-12-22 18:17 Usb.apk

-rw-r--r-- 1 root root 11640 2011-12-22 18:17 UserDictionaryProvider.apk

-rw-r--r-- 1 root root 1978135 2011-12-22 18:17 Vending.apk

-rw-r--r-- 1 root root 243274 2011-12-22 18:17 VideoPlayer.apk

-rw-r--r-- 1 root root 145862 2011-12-22 18:17 VisualizationWallpapers.apk

-rw-r--r-- 1 root root 61052 2011-12-22 18:17 VoiceReadoutService.apk

-rw-r--r-- 1 root root 1485636 2011-12-22 18:17 VoiceSearch.apk

-rw-r--r-- 1 root root 244922 2011-12-22 18:17 VpnClient.apk

-rw-r--r-- 1 root root 20393 2011-12-22 18:17 VpnServices.apk

-rw-r--r-- 1 root root 200612 2011-12-22 18:17 VSuiteApp.apk

-rw-r--r-- 1 root root 21975 2011-12-22 18:17 WapPushSI.apk

-rw-r--r-- 1 root root 3672651 2011-12-22 18:17 WeatherWidget.apk

-rw-r--r-- 1 root root 89576 2011-12-22 18:17 WebtopSession.apk

-rw-r--r-- 1 root root 8206 2011-12-22 18:17 WorkContacts.apk

-rw-r--r-- 1 root root 678495 2011-12-22 18:17 WorldClockWidget.apk

-rw-r--r-- 1 root root 6122 2011-12-22 18:17 YahooContacts.apk

-rw-r--r-- 1 root root 842276 2011-12-22 18:17 YouTube.apk

-rw-r--r-- 1 root root 6508 2011-12-22 18:17 ZoomService.apk

/system/framework listing:

-rw-r--r-- 1 root root 12394 2011-12-22 18:18 am.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 android.policy.jar

-rw-r--r-- 1 root root 80221 2011-12-22 18:18 android.test.runner.jar

-rw-r--r-- 1 root root 3706815 2011-12-22 18:18 blur-res.apk

-rw-r--r-- 1 root root 6406 2011-12-22 18:18 bmgr.jar

-rw-r--r-- 1 root root 305401 2011-12-22 18:18 bouncycastle.jar

-rw-r--r-- 1 root root 3349 2011-12-22 18:18 com.android.location.provider.jar

-rw-r--r-- 1 root root 10257 2011-12-22 18:18 com.motorola.android.camera.jar

-rw-r--r-- 1 root root 7497 2011-12-22 18:18 com.motorola.android.customization.jar

-rw-r--r-- 1 root root 7131 2011-12-22 18:18 com.motorola.android.datamanager.base.jar

-rw-r--r-- 1 root root 61213 2011-12-22 18:18 com.motorola.android.dlna.jar

-rw-r--r-- 1 root root 10425 2011-12-22 18:18 com.motorola.android.drm1.jar

-rw-r--r-- 1 root root 230744 2011-12-22 18:18 com.motorola.android.frameworks.jar

-rw-r--r-- 1 root root 4367 2011-12-22 18:18 com.motorola.android.iextdispservice.jar

-rw-r--r-- 1 root root 2711 2011-12-22 18:18 com.motorola.android.imirrorservice.jar

-rw-r--r-- 1 root root 62780 2011-12-22 18:18 com.motorola.android.mediasync.jar

-rw-r--r-- 1 root root 121468 2011-12-22 18:18 com.motorola.android.mime.jar

-rw-r--r-- 1 root root 16419 2011-12-22 18:18 com.motorola.android.mobad.jar

-rw-r--r-- 1 root root 1073 2011-12-22 18:18 com.motorola.android.nativehdmiapis_v1.jar

-rw-r--r-- 1 root root 1011 2011-12-22 18:18 com.motorola.android.storage.jar

-rw-r--r-- 1 root root 9760 2011-12-22 18:18 com.motorola.android.syncmlatt.jar

-rw-r--r-- 1 root root 21454 2011-12-22 18:18 com.motorola.android.telephony.jar

-rw-r--r-- 1 root root 719 2011-12-22 18:18 com.motorola.android.widget.jar

-rw-r--r-- 1 root root 5885 2011-12-22 18:18 com.motorola.app.admin.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 com.motorola.atcmd.base.jar

-rw-r--r-- 1 root root 5515 2011-12-22 18:18 com.motorola.atcmd.pluginMgr.jar

-rw-r--r-- 1 root root 42454 2011-12-22 18:18 com.motorola.blur.library.friendfeed.jar

-rw-r--r-- 1 root root 68187 2011-12-22 18:18 com.motorola.blur.library.home.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 com.motorola.blur.library.image.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 com.motorola.blur.library.messaging.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 com.motorola.blur.library.service.jar

-rw-r--r-- 1 root root 1266274 2011-12-22 18:18 com.motorola.blur.library.utilities.jar

-rw-r--r-- 1 root root 1928648 2011-12-22 18:18 core.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 core-junit.jar

-rw-r--r-- 1 root root 3180 2011-12-22 18:18 dmt.jar

-rw-r--r-- 1 root root 541008 2011-12-22 18:18 ext.jar

-rw-r--r-- 1 root root 3889496 2011-12-22 18:18 framework.jar

-rw-r--r-- 1 root root 4501218 2011-12-22 18:18 framework-res.apk

-rw-r--r-- 1 root root 269071 2011-12-22 18:18 guava.jar

-rw-r--r-- 1 root root 3445 2011-12-22 18:18 ime.jar

-rw-r--r-- 1 root root 2521 2011-12-22 18:18 input.jar

-rw-r--r-- 1 root root 27274 2011-12-22 18:18 javax.obex.jar

-rw-r--r-- 1 root root 184323 2011-12-22 18:18 jcifs-krb5-1.3.12.jar

-rw-r--r-- 1 root root 39395 2011-12-22 18:18 monkey.jar

-rw-r--r-- 1 root root 269323 2011-12-22 18:18 moto-res.apk

-rw-r--r-- 1 root root 12697 2011-12-22 18:18 pm.jar

-rw-r--r-- 1 root root 313 2011-12-22 18:18 services.jar

-rw-r--r-- 1 root root 55442 2011-12-22 18:18 sqlite-jdbc.jar

-rw-r--r-- 1 root root 3908 2011-12-22 18:18 svc.jar