[Droid Incredible Android Development] jermaine151:
Here's a list of "most" of the changed files:

Files old_ota/boot.img and new_ota/boot.img differ
Files old_ota/system/app/AppSharing.apk and new_ota/system/app/AppSharing.apk differ
Files old_ota/system/app/BrcmBluetoothServices.apk and new_ota/system/app/BrcmBluetoothServices.apk differ
Files old_ota/system/app/Calculator.apk and new_ota/system/app/Calculator.apk differ
Files old_ota/system/app/Calendar.apk and new_ota/system/app/Calendar.apk differ
Files old_ota/system/app/CalendarProvider.apk and new_ota/system/app/CalendarProvider.apk differ
Files old_ota/system/app/com.htc.FriendStreamWidget.apk and new_ota/system/app/com.htc.FriendStreamWidget.apk differ
Files old_ota/system/app/com.htc.MusicWidget.apk and new_ota/system/app/com.htc.MusicWidget.apk differ
Files old_ota/system/app/com.htc.NewsReaderWidget.apk and new_ota/system/app/com.htc.NewsReaderWidget.apk differ
Files old_ota/system/app/com.htc.TwitterWidget.apk and new_ota/system/app/com.htc.TwitterWidget.apk differ
Files old_ota/system/app/com.htc.WeatherWidget.apk and new_ota/system/app/com.htc.WeatherWidget.apk differ
Files old_ota/system/app/CustomizationSettingsProvider.apk and new_ota/system/app/CustomizationSettingsProvider.apk differ
Files old_ota/system/app/CustomizationSetup.apk and new_ota/system/app/CustomizationSetup.apk differ
Files old_ota/system/app/DCSImpl.apk and new_ota/system/app/DCSImpl.apk differ
Files old_ota/system/app/DCSStock.apk and new_ota/system/app/DCSStock.apk differ
Files old_ota/system/app/DCSUtility.apk and new_ota/system/app/DCSUtility.apk differ
Files old_ota/system/app/DrmProvider.apk and new_ota/system/app/DrmProvider.apk differ
Files old_ota/system/app/EPST.apk and new_ota/system/app/EPST.apk differ
Files old_ota/system/app/FilePicker.apk and new_ota/system/app/FilePicker.apk differ
Files old_ota/system/app/Flashlight.apk and new_ota/system/app/Flashlight.apk differ
Files old_ota/system/app/FriendStream.apk and new_ota/system/app/FriendStream.apk differ
Files old_ota/system/app/HTC_IME.apk and new_ota/system/app/HTC_IME.apk differ
Files old_ota/system/app/HtcAddProgramWidget.apk and new_ota/system/app/HtcAddProgramWidget.apk differ
Files old_ota/system/app/HTCAlbum.apk and new_ota/system/app/HTCAlbum.apk differ
Files old_ota/system/app/htcbookmarkwidget.apk and new_ota/system/app/htcbookmarkwidget.apk differ
Files old_ota/system/app/HtcCalculatorWidget.apk and new_ota/system/app/HtcCalculatorWidget.apk differ
Files old_ota/system/app/htccalendarwidgets.apk and new_ota/system/app/htccalendarwidgets.apk differ
Files old_ota/system/app/HTCCamera.apk and new_ota/system/app/HTCCamera.apk differ
Files old_ota/system/app/HtcCarPanel.apk and new_ota/system/app/HtcCarPanel.apk differ
Files old_ota/system/app/HtcClockWidget.apk and new_ota/system/app/HtcClockWidget.apk differ
Files old_ota/system/app/HtcContacts.apk and new_ota/system/app/HtcContacts.apk differ
Files old_ota/system/app/htccontactwidgets.apk and new_ota/system/app/htccontactwidgets.apk differ
Files old_ota/system/app/HtcDialer.apk and new_ota/system/app/HtcDialer.apk differ
Files old_ota/system/app/HtcFacebook.apk and new_ota/system/app/HtcFacebook.apk differ
Files old_ota/system/app/HtcLocationPicker.apk and new_ota/system/app/HtcLocationPicker.apk differ
Files old_ota/system/app/HtcLocationService.apk and new_ota/system/app/HtcLocationService.apk differ
Files old_ota/system/app/HtcLockScreen.apk and new_ota/system/app/HtcLockScreen.apk differ
Files old_ota/system/app/htcmailwidgets.apk and new_ota/system/app/htcmailwidgets.apk differ
Files old_ota/system/app/HtcMessageProvider.apk and new_ota/system/app/HtcMessageProvider.apk differ
Files old_ota/system/app/HtcMessageUploader.apk and new_ota/system/app/HtcMessageUploader.apk differ
Files old_ota/system/app/htcmsgwidgets.apk and new_ota/system/app/htcmsgwidgets.apk differ
Files old_ota/system/app/HtcPhotoWidget.apk and new_ota/system/app/HtcPhotoWidget.apk differ
Files old_ota/system/app/HtcProfileWidget.apk and new_ota/system/app/HtcProfileWidget.apk differ
Files old_ota/system/app/HtcRingtoneTrimmer.apk and new_ota/system/app/HtcRingtoneTrimmer.apk differ
Files old_ota/system/app/HtcRingtoneWidget.apk and new_ota/system/app/HtcRingtoneWidget.apk differ
Files old_ota/system/app/HTCSetupWizard.apk and new_ota/system/app/HTCSetupWizard.apk differ
Files old_ota/system/app/HtcSoundRecorder.apk and new_ota/system/app/HtcSoundRecorder.apk differ
Files old_ota/system/app/HtcStreamPlayer.apk and new_ota/system/app/HtcStreamPlayer.apk differ
Files old_ota/system/app/HtcTwitter.apk and new_ota/system/app/HtcTwitter.apk differ
Files old_ota/system/app/HtcWeatherWallpaper.apk and new_ota/system/app/HtcWeatherWallpaper.apk differ
Files old_ota/system/app/Mail.apk and new_ota/system/app/Mail.apk differ
Files old_ota/system/app/MediaProvider.apk and new_ota/system/app/MediaProvider.apk differ
Files old_ota/system/app/Mms.apk and new_ota/system/app/Mms.apk differ
Files old_ota/system/app/Mode10Wallpapers.apk and new_ota/system/app/Mode10Wallpapers.apk differ
Files old_ota/system/app/NewsReader.apk and new_ota/system/app/NewsReader.apk differ
Files old_ota/system/app/PCSCII.apk and new_ota/system/app/PCSCII.apk differ
Files old_ota/system/app/Phone.apk and new_ota/system/app/Phone.apk differ
Files old_ota/system/app/PluginManager.apk and new_ota/system/app/PluginManager.apk differ
Files old_ota/system/app/QuickLookup.apk and new_ota/system/app/QuickLookup.apk differ
Files old_ota/system/app/QXDM2SD.apk and new_ota/system/app/QXDM2SD.apk differ
Files old_ota/system/app/restartapp.apk and new_ota/system/app/restartapp.apk differ
Files old_ota/system/app/Rosie.apk and new_ota/system/app/Rosie.apk differ
Files old_ota/system/app/Settings.apk and new_ota/system/app/Settings.apk differ
Files old_ota/system/app/Superuser.apk and new_ota/system/app/Superuser.apk differ
Files old_ota/system/app/TVOUT.apk and new_ota/system/app/TVOUT.apk differ
Files old_ota/system/app/Updater.apk and new_ota/system/app/Updater.apk differ
Files old_ota/system/app/UpgradeSetup.apk and new_ota/system/app/UpgradeSetup.apk differ
Files old_ota/system/app/UploadProvider.apk and new_ota/system/app/UploadProvider.apk differ
Files old_ota/system/app/VzWBAClient.apk and new_ota/system/app/VzWBAClient.apk differ
Files old_ota/system/app/Weather.apk and new_ota/system/app/Weather.apk differ
Files old_ota/system/app/WeatherAgentService.apk and new_ota/system/app/WeatherAgentService.apk differ
Files old_ota/system/app/WeatherProvider.apk and new_ota/system/app/WeatherProvider.apk differ
Files old_ota/system/app/WeatherSyncProvider.apk and new_ota/system/app/WeatherSyncProvider.apk differ
Files old_ota/system/app/WidgetDownloadManager.apk and new_ota/system/app/WidgetDownloadManager.apk differ
Files old_ota/system/app/WifiRouter.apk and new_ota/system/app/WifiRouter.apk differ
Files old_ota/system/app/WorldClock.apk and new_ota/system/app/WorldClock.apk differ
Files old_ota/system/bin/debuggerd and new_ota/system/bin/debuggerd differ
Files old_ota/system/bin/netd and new_ota/system/bin/netd differ
Files old_ota/system/bin/su and new_ota/system/bin/su differ
Files old_ota/system/build.prop and new_ota/system/build.prop differ
Files old_ota/system/customize/AAInfo.txt and new_ota/system/customize/AAInfo.txt differ
Files old_ota/system/customize/resource/VZW_bootanimation.zip and new_ota/system/customize/resource/VZW_bootanimation.zip differ
Files old_ota/system/etc/NOTICE.html.gz and new_ota/system/etc/NOTICE.html.gz differ
Files old_ota/system/etc/security/cwcerts.zip and new_ota/system/etc/security/cwcerts.zip differ
Files old_ota/system/etc/security/otacerts.zip and new_ota/system/etc/security/otacerts.zip differ
Files old_ota/system/framework/am.jar and new_ota/system/framework/am.jar differ
Files old_ota/system/framework/android.policy.jar and new_ota/system/framework/android.policy.jar differ
Files old_ota/system/framework/android.test.runner.jar and new_ota/system/framework/android.test.runner.jar differ
Files old_ota/system/framework/bmgr.jar and new_ota/system/framework/bmgr.jar differ
Files old_ota/system/framework/bouncycastle.jar and new_ota/system/framework/bouncycastle.jar differ
Files old_ota/system/framework/com.android.location.provider.jar and new_ota/system/framework/com.android.location.provider.jar differ
Files old_ota/system/framework/com.google.translate.jar and new_ota/system/framework/com.google.translate.jar differ
Files old_ota/system/framework/com.htc.android.easopen.jar and new_ota/system/framework/com.htc.android.easopen.jar differ
Files old_ota/system/framework/com.htc.android.pimlib.jar and new_ota/system/framework/com.htc.android.pimlib.jar differ
Files old_ota/system/framework/com.htc.commonctrl.jar and new_ota/system/framework/com.htc.commonctrl.jar differ
Files old_ota/system/framework/com.htc.framework.jar and new_ota/system/framework/com.htc.framework.jar differ
Files old_ota/system/framework/com.htc.rss.jar and new_ota/system/framework/com.htc.rss.jar differ
Files old_ota/system/framework/com.orange.authentication.simcard.jar and new_ota/system/framework/com.orange.authentication.simcard.jar differ
Files old_ota/system/framework/com.scalado.util.ScaladoUtil.jar and new_ota/system/framework/com.scalado.util.ScaladoUtil.jar differ
Files old_ota/system/framework/core-junit.jar and new_ota/system/framework/core-junit.jar differ
Files old_ota/system/framework/core.jar and new_ota/system/framework/core.jar differ
Files old_ota/system/framework/ext.jar and new_ota/system/framework/ext.jar differ
Files old_ota/system/framework/framework.jar and new_ota/system/framework/framework.jar differ
Files old_ota/system/framework/ime.jar and new_ota/system/framework/ime.jar differ
Files old_ota/system/framework/input.jar and new_ota/system/framework/input.jar differ
Files old_ota/system/framework/javax.obex.jar and new_ota/system/framework/javax.obex.jar differ
Files old_ota/system/framework/monkey.jar and new_ota/system/framework/monkey.jar differ
Files old_ota/system/framework/pm.jar and new_ota/system/framework/pm.jar differ
Files old_ota/system/framework/services.jar and new_ota/system/framework/services.jar differ
Files old_ota/system/framework/sqlite-jdbc.jar and new_ota/system/framework/sqlite-jdbc.jar differ
Files old_ota/system/framework/svc.jar and new_ota/system/framework/svc.jar differ
Files old_ota/system/lib/libhtc_ril_switch.so and new_ota/system/lib/libhtc_ril_switch.so differ
Files old_ota/system/lib/libhtcqxdm2sd.so and new_ota/system/lib/libhtcqxdm2sd.so differ
Files old_ota/system/lib/libmedia.so and new_ota/system/lib/libmedia.so differ
Files old_ota/system/lib/modules/bcm4329.ko and new_ota/system/lib/modules/bcm4329.ko differ
Files old_ota/system/xbin/crasher and new_ota/system/xbin/crasher differ