#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ exit(int /*<<< orphan*/);
int /*<<< orphan*/ printf(char *, ...);
char *progname();
void printUsage() {
  printf(
      "Usage: %s -g genomeDirectory -s snpDirectory [options] [inputFiles]\n",
      progname());
  printf("Purpose: Designing allele-specific primers for detecting "
         "recombination hotspots\n");
  printf("Example: asp -g data/mus/genome -s data/mus/vcf "
         "data/mus/exampleHotSpots19.txt\n");
  printf("Options:\n");
  printf("\t-g STR path to folder containing genome files\n");
  printf("\t-s STR path to folder containing SNPs in VCF format\n");
  printf("\t[-m NUM minimum primer length; default: %d]\n", 14);
  printf("\t[-M NUM maximum primer length; default: %d]\n", 19);
  printf("\t[-o NUM optimal GC content; default: %.2f]\n", 0.5);
  printf("\t[-f NUM length of flanking region; default: %d]\n", 5000);
  printf("\t[-r reverse primer; default: forward]\n");
  printf("\t[-u universals of default lengths %d-%d; default: allele-specific "
         "primers]\n",
         20, 25);
  printf("\t[-d NUM distance between forward universals; default: %d]\n", 200);
  printf("\t[-D NUM distance between reverse universals; default: %d]\n", 200);
  printf("\t[-b print debugging information]\n");
  printf("\t[-h print this help message and exit]\n");
  printf("\t[-v print program information and exit]\n");
  exit(0);
}


x86 assembly (clang, -O0):
<printUsage>:
push   %rbp
mov    %rsp,%rbp
mov    $0x0,%al
call   1030 <progname@plt>
mov    %rax,%rsi
lea    0xec3(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xefa(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xf3d(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xf7f(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xf7b(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xf9d(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xfc5(%rip),%rdi
mov    $0xe,%esi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xfe0(%rip),%rdi
mov    $0x13,%esi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0xffb(%rip),%rdi
movsd  0xe39(%rip),%xmm0
mov    $0x1,%al
call   1040 <printf@plt>
lea    0x1012(%rip),%rdi
mov    $0x1388,%esi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x1031(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x104b(%rip),%rdi
mov    $0x14,%esi
mov    $0x19,%edx
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x1080(%rip),%rdi
mov    $0xc8,%esi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x10a9(%rip),%rdi
mov    $0xc8,%esi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x10d2(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x10e7(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
lea    0x1101(%rip),%rdi
mov    $0x0,%al
call   1040 <printf@plt>
xor    %edi,%edi
call   1050 <exit@plt>

x86 assembly (clang, -O2):
<printUsage>:
push   %rax
xor    %eax,%eax
call   1030 <progname@plt>
lea    0xeb9(%rip),%rdi
mov    %rax,%rsi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0x106d(%rip),%rdi
call   1040 <puts@plt>
lea    0x10b1(%rip),%rdi
call   1040 <puts@plt>
lea    0x10f4(%rip),%rdi
call   1040 <puts@plt>
lea    0x10f1(%rip),%rdi
call   1040 <puts@plt>
lea    0x1114(%rip),%rdi
call   1040 <puts@plt>
lea    0xeb1(%rip),%rdi
mov    $0xe,%esi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0xecc(%rip),%rdi
mov    $0x13,%esi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0xee7(%rip),%rdi
movsd  0xe36(%rip),%xmm0
mov    $0x1,%al
call   1050 <printf@plt>
lea    0xefe(%rip),%rdi
mov    $0x1388,%esi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0x10ee(%rip),%rdi
call   1040 <puts@plt>
lea    0xf11(%rip),%rdi
mov    $0x14,%esi
mov    $0x19,%edx
xor    %eax,%eax
call   1050 <printf@plt>
lea    0xf46(%rip),%rdi
mov    $0xc8,%esi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0xf6f(%rip),%rdi
mov    $0xc8,%esi
xor    %eax,%eax
call   1050 <printf@plt>
lea    0x10cb(%rip),%rdi
call   1040 <puts@plt>
lea    0x10e1(%rip),%rdi
call   1040 <puts@plt>
lea    0x10fc(%rip),%rdi
call   1040 <puts@plt>
xor    %edi,%edi
call   1060 <exit@plt>

LLVM IR (-O0):
@.str = [69 x i8] c"Usage: %s -g genomeDirectory -s snpDirectory [options] [inputFiles]\0A\00"
@.str.1 = [81 x i8] c"Purpose: Designing allele-specific primers for detecting recombination hotspots\0A\00"
@.str.2 = [80 x i8] c"Example: asp -g data/mus/genome -s data/mus/vcf data/mus/exampleHotSpots19.txt\0A\00"
@.str.3 = [10 x i8] c"Options:\0A\00"
@.str.4 = [48 x i8] c"\09-g STR path to folder containing genome files\0A\00"
@.str.5 = [54 x i8] c"\09-s STR path to folder containing SNPs in VCF format\0A\00"
@.str.6 = [46 x i8] c"\09[-m NUM minimum primer length; default: %d]\0A\00"
@.str.7 = [46 x i8] c"\09[-M NUM maximum primer length; default: %d]\0A\00"
@.str.8 = [45 x i8] c"\09[-o NUM optimal GC content; default: %.2f]\0A\00"
@.str.9 = [50 x i8] c"\09[-f NUM length of flanking region; default: %d]\0A\00"
@.str.10 = [40 x i8] c"\09[-r reverse primer; default: forward]\0A\00"
@.str.11 = [77 x i8] c"\09[-u universals of default lengths %d-%d; default: allele-specific primers]\0A\00"
@.str.12 = [60 x i8] c"\09[-d NUM distance between forward universals; default: %d]\0A\00"
@.str.13 = [60 x i8] c"\09[-D NUM distance between reverse universals; default: %d]\0A\00"
@.str.14 = [35 x i8] c"\09[-b print debugging information]\0A\00"
@.str.15 = [40 x i8] c"\09[-h print this help message and exit]\0A\00"
@.str.16 = [42 x i8] c"\09[-v print program information and exit]\0A\00"
define void @printUsage() {
%1 = call i8* (...) @progname()
%2 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([69 x i8], [69 x i8]* @.str, i64 0, i64 0), i8* %1)
%3 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([81 x i8], [81 x i8]* @.str.1, i64 0, i64 0))
%4 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([80 x i8], [80 x i8]* @.str.2, i64 0, i64 0))
%5 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.3, i64 0, i64 0))
%6 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([48 x i8], [48 x i8]* @.str.4, i64 0, i64 0))
%7 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([54 x i8], [54 x i8]* @.str.5, i64 0, i64 0))
%8 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([46 x i8], [46 x i8]* @.str.6, i64 0, i64 0), i32 14)
%9 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([46 x i8], [46 x i8]* @.str.7, i64 0, i64 0), i32 19)
%10 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([45 x i8], [45 x i8]* @.str.8, i64 0, i64 0), double 5.000000e-01)
%11 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([50 x i8], [50 x i8]* @.str.9, i64 0, i64 0), i32 5000)
%12 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([40 x i8], [40 x i8]* @.str.10, i64 0, i64 0))
%13 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([77 x i8], [77 x i8]* @.str.11, i64 0, i64 0), i32 20, i32 25)
%14 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.12, i64 0, i64 0), i32 200)
%15 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.13, i64 0, i64 0), i32 200)
%16 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([35 x i8], [35 x i8]* @.str.14, i64 0, i64 0))
%17 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([40 x i8], [40 x i8]* @.str.15, i64 0, i64 0))
%18 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.16, i64 0, i64 0))
%19 = call i32 @exit(i32 0)
unreachable
}

LLVM IR (-O2):
@.str = [69 x i8] c"Usage: %s -g genomeDirectory -s snpDirectory [options] [inputFiles]\0A\00"
@.str.6 = [46 x i8] c"\09[-m NUM minimum primer length; default: %d]\0A\00"
@.str.7 = [46 x i8] c"\09[-M NUM maximum primer length; default: %d]\0A\00"
@.str.8 = [45 x i8] c"\09[-o NUM optimal GC content; default: %.2f]\0A\00"
@.str.9 = [50 x i8] c"\09[-f NUM length of flanking region; default: %d]\0A\00"
@.str.11 = [77 x i8] c"\09[-u universals of default lengths %d-%d; default: allele-specific primers]\0A\00"
@.str.12 = [60 x i8] c"\09[-d NUM distance between forward universals; default: %d]\0A\00"
@.str.13 = [60 x i8] c"\09[-D NUM distance between reverse universals; default: %d]\0A\00"
@str = [80 x i8] c"Purpose: Designing allele-specific primers for detecting recombination hotspots\00"
@str.17 = [79 x i8] c"Example: asp -g data/mus/genome -s data/mus/vcf data/mus/exampleHotSpots19.txt\00"
@str.18 = [9 x i8] c"Options:\00"
@str.19 = [47 x i8] c"\09-g STR path to folder containing genome files\00"
@str.20 = [53 x i8] c"\09-s STR path to folder containing SNPs in VCF format\00"
@str.21 = [39 x i8] c"\09[-r reverse primer; default: forward]\00"
@str.22 = [34 x i8] c"\09[-b print debugging information]\00"
@str.23 = [39 x i8] c"\09[-h print this help message and exit]\00"
@str.24 = [41 x i8] c"\09[-v print program information and exit]\00"
define void @printUsage() {
%1 = tail call i8* (...) @progname()
%2 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([69 x i8], [69 x i8]* @.str, i64 0, i64 0), i8* %1)
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([80 x i8], [80 x i8]* @str, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([79 x i8], [79 x i8]* @str.17, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([9 x i8], [9 x i8]* @str.18, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([47 x i8], [47 x i8]* @str.19, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([53 x i8], [53 x i8]* @str.20, i64 0, i64 0))
%8 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([46 x i8], [46 x i8]* @.str.6, i64 0, i64 0), i32 14)
%9 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([46 x i8], [46 x i8]* @.str.7, i64 0, i64 0), i32 19)
%10 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([45 x i8], [45 x i8]* @.str.8, i64 0, i64 0), double 5.000000e-01)
%11 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([50 x i8], [50 x i8]* @.str.9, i64 0, i64 0), i32 5000)
%12 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([39 x i8], [39 x i8]* @str.21, i64 0, i64 0))
%13 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([77 x i8], [77 x i8]* @.str.11, i64 0, i64 0), i32 20, i32 25)
%14 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([60 x i8], [60 x i8]* @.str.12, i64 0, i64 0), i32 200)
%15 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([60 x i8], [60 x i8]* @.str.13, i64 0, i64 0), i32 200)
%16 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([34 x i8], [34 x i8]* @str.22, i64 0, i64 0))
%17 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([39 x i8], [39 x i8]* @str.23, i64 0, i64 0))
%18 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([41 x i8], [41 x i8]* @str.24, i64 0, i64 0))
%19 = tail call i32 @exit(i32 0)
unreachable
}