#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ exit(int);
int /*<<< orphan*/ printf(char *);
void usage() {
  printf("mk_fqbin converts a fastQ input file or STDIN stream (use no "
         "filename or '-') to compressed fqbin format.\n\n");
  printf(
      "Usage: mk_fqbin [OPTIONS] -o output_file [fastq_file_input_file]\n\n");
  printf("Options:\n");
  printf("    -i create random access index\n");
  printf("    -d discretize_qual: quality values are discretized in groups of "
         "size discretize_qual. This way less quality values are used and a "
         "better compression is obtained\n");
  printf("    -f flatten_qual: quality values over flatten_qual (use phred "
         "scale) will be set to flatten_qual value in order to achieve a "
         "better compression\n");
  printf("    -e extras_file: a file with extra metadata for each sequence if "
         "standard FASTA format\n");
  printf("Mandatory parameters:\n");
  printf("    -o output_file: output fqbin file\n");
  printf("    -F input is in fasta format (will look for filename.qual for "
         "qualities) \n");
  printf("\nSCBI - Supercomputación y Bioinformática. University of Malaga. "
         "http://www.scbi.uma.es. Copyright 2011\n\n");
  exit(-1);
}


x86 assembly (clang, -O0):
<usage>:
push   %rbp
mov    %rsp,%rbp
lea    0xed5(%rip),%rdi
call   1030 <printf@plt>
lea    0xf35(%rip),%rdi
call   1030 <printf@plt>
lea    0xf6c(%rip),%rdi
call   1030 <printf@plt>
lea    0xf6a(%rip),%rdi
call   1030 <printf@plt>
lea    0xf81(%rip),%rdi
call   1030 <printf@plt>
lea    0x101b(%rip),%rdi
call   1030 <printf@plt>
lea    0x10a3(%rip),%rdi
call   1030 <printf@plt>
lea    0x10f2(%rip),%rdi
call   1030 <printf@plt>
lea    0x10fd(%rip),%rdi
call   1030 <printf@plt>
lea    0x1118(%rip),%rdi
call   1030 <printf@plt>
lea    0x115a(%rip),%rdi
call   1030 <printf@plt>
mov    $0xffffffff,%edi
call   1040 <exit@plt>

x86 assembly (clang, -O2):
<usage>:
push   %rax
lea    0xed8(%rip),%rdi
call   1030 <puts@plt>
lea    0xf37(%rip),%rdi
call   1030 <puts@plt>
lea    0xf6d(%rip),%rdi
call   1030 <puts@plt>
lea    0xf6a(%rip),%rdi
call   1030 <puts@plt>
lea    0xf80(%rip),%rdi
call   1030 <puts@plt>
lea    0x1019(%rip),%rdi
call   1030 <puts@plt>
lea    0x10a0(%rip),%rdi
call   1030 <puts@plt>
lea    0x10ee(%rip),%rdi
call   1030 <puts@plt>
lea    0x10f8(%rip),%rdi
call   1030 <puts@plt>
lea    0x1112(%rip),%rdi
call   1030 <puts@plt>
lea    0x1153(%rip),%rdi
call   1030 <puts@plt>
mov    $0xffffffff,%edi
call   1040 <exit@plt>

LLVM IR (-O0):
@.str = [108 x i8] c"mk_fqbin converts a fastQ input file or STDIN stream (use no filename or '-') to compressed fqbin format.\0A\0A\00"
@.str.1 = [67 x i8] c"Usage: mk_fqbin [OPTIONS] -o output_file [fastq_file_input_file]\0A\0A\00"
@.str.2 = [10 x i8] c"Options:\0A\00"
@.str.3 = [35 x i8] c" -i create random access index\0A\00"
@.str.4 = [166 x i8] c" -d discretize_qual: quality values are discretized in groups of size discretize_qual. This way less quality values are used and a better compression is obtained\0A\00"
@.str.5 = [148 x i8] c" -f flatten_qual: quality values over flatten_qual (use phred scale) will be set to flatten_qual value in order to achieve a better compression\0A\00"
@.str.6 = [91 x i8] c" -e extras_file: a file with extra metadata for each sequence if standard FASTA format\0A\00"
@.str.7 = [23 x i8] c"Mandatory parameters:\0A\00"
@.str.8 = [39 x i8] c" -o output_file: output fqbin file\0A\00"
@.str.9 = [78 x i8] c" -F input is in fasta format (will look for filename.qual for qualities) \0A\00"
@.str.10 = [108 x i8] c"\0ASCBI - Supercomputaci\C3\B3n y Bioinform\C3\A1tica. University of Malaga. http://www.scbi.uma.es. Copyright 2011\0A\0A\00"
define void @usage() {
%1 = call i32 @printf(i8* getelementptr inbounds ([108 x i8], [108 x i8]* @.str, i64 0, i64 0))
%2 = call i32 @printf(i8* getelementptr inbounds ([67 x i8], [67 x i8]* @.str.1, i64 0, i64 0))
%3 = call i32 @printf(i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.2, i64 0, i64 0))
%4 = call i32 @printf(i8* getelementptr inbounds ([35 x i8], [35 x i8]* @.str.3, i64 0, i64 0))
%5 = call i32 @printf(i8* getelementptr inbounds ([166 x i8], [166 x i8]* @.str.4, i64 0, i64 0))
%6 = call i32 @printf(i8* getelementptr inbounds ([148 x i8], [148 x i8]* @.str.5, i64 0, i64 0))
%7 = call i32 @printf(i8* getelementptr inbounds ([91 x i8], [91 x i8]* @.str.6, i64 0, i64 0))
%8 = call i32 @printf(i8* getelementptr inbounds ([23 x i8], [23 x i8]* @.str.7, i64 0, i64 0))
%9 = call i32 @printf(i8* getelementptr inbounds ([39 x i8], [39 x i8]* @.str.8, i64 0, i64 0))
%10 = call i32 @printf(i8* getelementptr inbounds ([78 x i8], [78 x i8]* @.str.9, i64 0, i64 0))
%11 = call i32 @printf(i8* getelementptr inbounds ([108 x i8], [108 x i8]* @.str.10, i64 0, i64 0))
%12 = call i32 @exit(i32 -1)
unreachable
}

LLVM IR (-O2):
@str = [107 x i8] c"mk_fqbin converts a fastQ input file or STDIN stream (use no filename or '-') to compressed fqbin format.\0A\00"
@str.11 = [66 x i8] c"Usage: mk_fqbin [OPTIONS] -o output_file [fastq_file_input_file]\0A\00"
@str.12 = [9 x i8] c"Options:\00"
@str.13 = [34 x i8] c" -i create random access index\00"
@str.14 = [165 x i8] c" -d discretize_qual: quality values are discretized in groups of size discretize_qual. This way less quality values are used and a better compression is obtained\00"
@str.15 = [147 x i8] c" -f flatten_qual: quality values over flatten_qual (use phred scale) will be set to flatten_qual value in order to achieve a better compression\00"
@str.16 = [90 x i8] c" -e extras_file: a file with extra metadata for each sequence if standard FASTA format\00"
@str.17 = [22 x i8] c"Mandatory parameters:\00"
@str.18 = [38 x i8] c" -o output_file: output fqbin file\00"
@str.19 = [77 x i8] c" -F input is in fasta format (will look for filename.qual for qualities) \00"
@str.20 = [107 x i8] c"\0ASCBI - Supercomputaci\C3\B3n y Bioinform\C3\A1tica. University of Malaga. http://www.scbi.uma.es. Copyright 2011\0A\00"
define void @usage() {
%1 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([107 x i8], [107 x i8]* @str, i64 0, i64 0))
%2 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([66 x i8], [66 x i8]* @str.11, i64 0, i64 0))
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([9 x i8], [9 x i8]* @str.12, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([34 x i8], [34 x i8]* @str.13, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([165 x i8], [165 x i8]* @str.14, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([147 x i8], [147 x i8]* @str.15, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([90 x i8], [90 x i8]* @str.16, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([22 x i8], [22 x i8]* @str.17, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([38 x i8], [38 x i8]* @str.18, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([77 x i8], [77 x i8]* @str.19, i64 0, i64 0))
%11 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([107 x i8], [107 x i8]* @str.20, i64 0, i64 0))
%12 = tail call i32 @exit(i32 -1)
unreachable
}