#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ exit(int /*<<< orphan*/);
int /*<<< orphan*/ printf(char *, ...);
void hmmtop_shortusage(char *pn) {
  printf("Usage: \"%s options\", where options are the following:\n", pn);
  printf("-if=filename    name of input file, -- stands stdin\n");
  printf("-of=filename    name of output file, -- stands stdout\n");
  printf(
      "-lf=filename    name of the logfile, use only for debugging purpose\n");
  printf("-sf=XXX         format of sequence(s).  XXX=PIR or FAS or SWP\n");
  printf("-pi=xxx         process input xxx=spred or mpred\n");
  printf("-ps=xxx         size of pseudo count vector xxx=0-10000\n");
  printf("-loc=b-e-sp     localize the sequence between b and e in sp\n");
  printf("-locf=filename  name of the loc_file containing the locates for each "
         "sequence\n");
  printf("-noit           do not iterate for optimization of the model\n");
  printf("-is=xxx         starting point of the iteration(s). xxx=pseudo or "
         "random\n");
  printf("-in=xxx         number of iterations (only if is=random)\n");
  printf("-pp             print the optimized probabilies\n");
  printf("-pc             print the pseudocount vector used\n");
  printf("-pl             print prediction in a long format\n");
  printf("-h              print a long help message\n");
  printf("-sh             print this (short) help message\n");
  printf("References:     J. Mol. Biol. (1998), 283, 489-506\n");
  printf("                http://www.enzim.hu/hmmtop\n");
  exit(0);
}


x86 assembly (clang, -O0):
<hmmtop_shortusage>:
push   %rbp
mov    %rsp,%rbp
sub    $0x10,%rsp
mov    %rdi,-0x8(%rbp)
mov    -0x8(%rbp),%rsi
lea    0xec9(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xef2(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xf19(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xf42(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xf79(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xfaa(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xfce(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0xff9(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1028(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1069(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1099(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x10d5(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1101(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1124(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x1149(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x116e(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x118b(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x11ae(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
lea    0x11d4(%rip),%rdi
mov    $0x0,%al
call   1030 <printf@plt>
xor    %edi,%edi
call   1040 <exit@plt>

x86 assembly (clang, -O2):
<hmmtop_shortusage>:
push   %rax
mov    %rdi,%rsi
lea    0xec5(%rip),%rdi
xor    %eax,%eax
call   1040 <printf@plt>
lea    0xeee(%rip),%rdi
call   1030 <puts@plt>
lea    0xf16(%rip),%rdi
call   1030 <puts@plt>
lea    0xf40(%rip),%rdi
call   1030 <puts@plt>
lea    0xf78(%rip),%rdi
call   1030 <puts@plt>
lea    0xfaa(%rip),%rdi
call   1030 <puts@plt>
lea    0xfcf(%rip),%rdi
call   1030 <puts@plt>
lea    0xffb(%rip),%rdi
call   1030 <puts@plt>
lea    0x102b(%rip),%rdi
call   1030 <puts@plt>
lea    0x106d(%rip),%rdi
call   1030 <puts@plt>
lea    0x109e(%rip),%rdi
call   1030 <puts@plt>
lea    0x10db(%rip),%rdi
call   1030 <puts@plt>
lea    0x1108(%rip),%rdi
call   1030 <puts@plt>
lea    0x112c(%rip),%rdi
call   1030 <puts@plt>
lea    0x1152(%rip),%rdi
call   1030 <puts@plt>
lea    0x1178(%rip),%rdi
call   1030 <puts@plt>
lea    0x1196(%rip),%rdi
call   1030 <puts@plt>
lea    0x11ba(%rip),%rdi
call   1030 <puts@plt>
lea    0x11e1(%rip),%rdi
call   1030 <puts@plt>
xor    %edi,%edi
call   1050 <exit@plt>

LLVM IR (-O0):
@.str = [55 x i8] c"Usage: \22%s options\22, where options are the following:\0A\00"
@.str.1 = [53 x i8] c"-if=filename name of input file, -- stands stdin\0A\00"
@.str.2 = [55 x i8] c"-of=filename name of output file, -- stands stdout\0A\00"
@.str.3 = [69 x i8] c"-lf=filename name of the logfile, use only for debugging purpose\0A\00"
@.str.4 = [63 x i8] c"-sf=XXX format of sequence(s). XXX=PIR or FAS or SWP\0A\00"
@.str.5 = [50 x i8] c"-pi=xxx process input xxx=spred or mpred\0A\00"
@.str.6 = [57 x i8] c"-ps=xxx size of pseudo count vector xxx=0-10000\0A\00"
@.str.7 = [61 x i8] c"-loc=b-e-sp localize the sequence between b and e in sp\0A\00"
@.str.8 = [79 x i8] c"-locf=filename name of the loc_file containing the locates for each sequence\0A\00"
@.str.9 = [62 x i8] c"-noit do not iterate for optimization of the model\0A\00"
@.str.10 = [74 x i8] c"-is=xxx starting point of the iteration(s). xxx=pseudo or random\0A\00"
@.str.11 = [58 x i8] c"-in=xxx number of iterations (only if is=random)\0A\00"
@.str.12 = [49 x i8] c"-pp print the optimized probabilies\0A\00"
@.str.13 = [51 x i8] c"-pc print the pseudocount vector used\0A\00"
@.str.14 = [51 x i8] c"-pl print prediction in a long format\0A\00"
@.str.15 = [43 x i8] c"-h print a long help message\0A\00"
@.str.16 = [49 x i8] c"-sh print this (short) help message\0A\00"
@.str.17 = [52 x i8] c"References: J. Mol. Biol. (1998), 283, 489-506\0A\00"
@.str.18 = [44 x i8] c" http://www.enzim.hu/hmmtop\0A\00"
define void @hmmtop_shortusage(i8* %0) {
%2 = alloca i8*
store i8* %0, i8** %2
%3 = load i8*, i8** %2
%4 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([55 x i8], [55 x i8]* @.str, i64 0, i64 0), i8* %3)
%5 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([53 x i8], [53 x i8]* @.str.1, i64 0, i64 0))
%6 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([55 x i8], [55 x i8]* @.str.2, i64 0, i64 0))
%7 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([69 x i8], [69 x i8]* @.str.3, i64 0, i64 0))
%8 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([63 x i8], [63 x i8]* @.str.4, i64 0, i64 0))
%9 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([50 x i8], [50 x i8]* @.str.5, i64 0, i64 0))
%10 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([57 x i8], [57 x i8]* @.str.6, i64 0, i64 0))
%11 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([61 x i8], [61 x i8]* @.str.7, i64 0, i64 0))
%12 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([79 x i8], [79 x i8]* @.str.8, i64 0, i64 0))
%13 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([62 x i8], [62 x i8]* @.str.9, i64 0, i64 0))
%14 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([74 x i8], [74 x i8]* @.str.10, i64 0, i64 0))
%15 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([58 x i8], [58 x i8]* @.str.11, i64 0, i64 0))
%16 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.12, i64 0, i64 0))
%17 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.13, i64 0, i64 0))
%18 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.14, i64 0, i64 0))
%19 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([43 x i8], [43 x i8]* @.str.15, i64 0, i64 0))
%20 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.16, i64 0, i64 0))
%21 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([52 x i8], [52 x i8]* @.str.17, i64 0, i64 0))
%22 = call i32 (i8*, ...) @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.18, i64 0, i64 0))
%23 = call i32 @exit(i32 0)
unreachable
}

LLVM IR (-O2):
@.str = [55 x i8] c"Usage: \22%s options\22, where options are the following:\0A\00"
@str = [52 x i8] c"-if=filename name of input file, -- stands stdin\00"
@str.19 = [54 x i8] c"-of=filename name of output file, -- stands stdout\00"
@str.20 = [68 x i8] c"-lf=filename name of the logfile, use only for debugging purpose\00"
@str.21 = [62 x i8] c"-sf=XXX format of sequence(s). XXX=PIR or FAS or SWP\00"
@str.22 = [49 x i8] c"-pi=xxx process input xxx=spred or mpred\00"
@str.23 = [56 x i8] c"-ps=xxx size of pseudo count vector xxx=0-10000\00"
@str.24 = [60 x i8] c"-loc=b-e-sp localize the sequence between b and e in sp\00"
@str.25 = [78 x i8] c"-locf=filename name of the loc_file containing the locates for each sequence\00"
@str.26 = [61 x i8] c"-noit do not iterate for optimization of the model\00"
@str.27 = [73 x i8] c"-is=xxx starting point of the iteration(s). xxx=pseudo or random\00"
@str.28 = [57 x i8] c"-in=xxx number of iterations (only if is=random)\00"
@str.29 = [48 x i8] c"-pp print the optimized probabilies\00"
@str.30 = [50 x i8] c"-pc print the pseudocount vector used\00"
@str.31 = [50 x i8] c"-pl print prediction in a long format\00"
@str.32 = [42 x i8] c"-h print a long help message\00"
@str.33 = [48 x i8] c"-sh print this (short) help message\00"
@str.34 = [51 x i8] c"References: J. Mol. Biol. (1998), 283, 489-506\00"
@str.35 = [43 x i8] c" http://www.enzim.hu/hmmtop\00"
define void @hmmtop_shortusage(i8* %0) {
%2 = tail call i32 (i8*, ...) @printf(i8* dereferenceable(1) getelementptr inbounds ([55 x i8], [55 x i8]* @.str, i64 0, i64 0), i8* %0)
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([52 x i8], [52 x i8]* @str, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([54 x i8], [54 x i8]* @str.19, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([68 x i8], [68 x i8]* @str.20, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([62 x i8], [62 x i8]* @str.21, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([49 x i8], [49 x i8]* @str.22, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([56 x i8], [56 x i8]* @str.23, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([60 x i8], [60 x i8]* @str.24, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([78 x i8], [78 x i8]* @str.25, i64 0, i64 0))
%11 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([61 x i8], [61 x i8]* @str.26, i64 0, i64 0))
%12 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([73 x i8], [73 x i8]* @str.27, i64 0, i64 0))
%13 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([57 x i8], [57 x i8]* @str.28, i64 0, i64 0))
%14 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([48 x i8], [48 x i8]* @str.29, i64 0, i64 0))
%15 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([50 x i8], [50 x i8]* @str.30, i64 0, i64 0))
%16 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([50 x i8], [50 x i8]* @str.31, i64 0, i64 0))
%17 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([42 x i8], [42 x i8]* @str.32, i64 0, i64 0))
%18 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([48 x i8], [48 x i8]* @str.33, i64 0, i64 0))
%19 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([51 x i8], [51 x i8]* @str.34, i64 0, i64 0))
%20 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str.35, i64 0, i64 0))
%21 = tail call i32 @exit(i32 0)
unreachable
}