#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ fprintf(int /*<<< orphan*/, char *);
int /*<<< orphan*/ stderr;
int tr_filter_usage() {
  fprintf(stderr, "\n");
  fprintf(stderr, "Usage:   treebest filter [options] <alignment>\n\n");
  fprintf(stderr, "Options: -n         nucleotide alignment\n");
  fprintf(stderr, "         -g         collapse alternative splicing\n");
  fprintf(stderr, "         -M         do not apply alignment mask\n");
  fprintf(stderr, "         -N         do not mask low-scoring segments\n");
  fprintf(stderr, "         -F NUM     quality cut-off [15]\n\n");
  return 1;
}


x86 assembly (clang, -O0):
<tr_filter_usage>:
push   %rbp
mov    %rsp,%rbp
mov    0x2ec5(%rip),%rax
mov    (%rax),%edi
lea    0xf0b(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2eb0(%rip),%rax
mov    (%rax),%edi
lea    0xec7(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e9b(%rip),%rax
mov    (%rax),%edi
lea    0xee3(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e86(%rip),%rax
mov    (%rax),%edi
lea    0xef8(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e71(%rip),%rax
mov    (%rax),%edi
lea    0xf16(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e5c(%rip),%rax
mov    (%rax),%edi
lea    0xf32(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e47(%rip),%rax
mov    (%rax),%edi
lea    0xf53(%rip),%rsi
call   1030 <fprintf@plt>
mov    $0x1,%eax
pop    %rbp
ret

x86 assembly (clang, -O2):
<tr_filter_usage>:
push   %rbx
mov    0x2ec8(%rip),%rbx
mov    (%rbx),%edi
lea    0xf0e(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xed1(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xef4(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf10(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf35(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf58(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf80(%rip),%rsi
call   1030 <fprintf@plt>
mov    $0x1,%eax
pop    %rbx
ret

LLVM IR (-O0):
@stderr = global i32 0
@.str = [2 x i8] c"\0A\00"
@.str.1 = [49 x i8] c"Usage: treebest filter [options] <alignment>\0A\0A\00"
@.str.2 = [42 x i8] c"Options: -n nucleotide alignment\0A\00"
@.str.3 = [51 x i8] c" -g collapse alternative splicing\0A\00"
@.str.4 = [49 x i8] c" -M do not apply alignment mask\0A\00"
@.str.5 = [54 x i8] c" -N do not mask low-scoring segments\0A\00"
@.str.6 = [43 x i8] c" -F NUM quality cut-off [15]\0A\0A\00"
define i32 @tr_filter_usage() {
%1 = load i32, i32* @stderr
%2 = call i32 @fprintf(i32 %1, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = call i32 @fprintf(i32 %3, i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = call i32 @fprintf(i32 %5, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.2, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = call i32 @fprintf(i32 %7, i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.3, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = call i32 @fprintf(i32 %9, i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.4, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = call i32 @fprintf(i32 %11, i8* getelementptr inbounds ([54 x i8], [54 x i8]* @.str.5, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = call i32 @fprintf(i32 %13, i8* getelementptr inbounds ([43 x i8], [43 x i8]* @.str.6, i64 0, i64 0))
ret i32 1
}

LLVM IR (-O2):
@stderr = global i32 0
@.str = [2 x i8] c"\0A\00"
@.str.1 = [49 x i8] c"Usage: treebest filter [options] <alignment>\0A\0A\00"
@.str.2 = [42 x i8] c"Options: -n nucleotide alignment\0A\00"
@.str.3 = [51 x i8] c" -g collapse alternative splicing\0A\00"
@.str.4 = [49 x i8] c" -M do not apply alignment mask\0A\00"
@.str.5 = [54 x i8] c" -N do not mask low-scoring segments\0A\00"
@.str.6 = [43 x i8] c" -F NUM quality cut-off [15]\0A\0A\00"
define i32 @tr_filter_usage() {
%1 = load i32, i32* @stderr
%2 = tail call i32 @fprintf(i32 %1, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = tail call i32 @fprintf(i32 %3, i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = tail call i32 @fprintf(i32 %5, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.2, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = tail call i32 @fprintf(i32 %7, i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.3, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = tail call i32 @fprintf(i32 %9, i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.4, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = tail call i32 @fprintf(i32 %11, i8* getelementptr inbounds ([54 x i8], [54 x i8]* @.str.5, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = tail call i32 @fprintf(i32 %13, i8* getelementptr inbounds ([43 x i8], [43 x i8]* @.str.6, i64 0, i64 0))
ret i32 1
}