#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ fprintf(int /*<<< orphan*/, char *, ...);
int /*<<< orphan*/ stderr;
int usage() {
  fprintf(stderr, "\n");
  fprintf(stderr, "Program: vcf_del (format the <deletion> vcf file)\n");
  fprintf(stderr, "Version: %s\n", "0.2.7");
  fprintf(stderr, "Contact: zz_zigzag <zz_zigzag@outlook.com>\n\n");
  fprintf(stderr, "Usage:   vcf_del [option] <in.vcf> <out.vcf>\n\n");
  fprintf(stderr, "Options: -f        remove the overlapping deletions\n");
  fprintf(stderr, "                   and only include the pure deletions.\n");
  fprintf(stderr,
          "         -c STRING the chromosome to output(default all).\n");
  fprintf(stderr,
          "         -n STRING the sample to output(need -g, default all).\n");
  fprintf(stderr,
          "         -i INT    the minimum length for deletions(default 0).\n");
  fprintf(stderr, "\n");
  fprintf(stderr,
          "         -g        output with the genotype of individual.\n");
  fprintf(stderr,
          "         -o        only output the genotype of deletion existed\n");
  fprintf(stderr, "         -s        simple genotype: 0 or 1\n");
  return 1;
}


x86 assembly (clang, -O0):
<usage>:
push   %rbp
mov    %rsp,%rbp
mov    0x2ec5(%rip),%rax
mov    (%rax),%edi
lea    0xf7c(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2eae(%rip),%rax
mov    (%rax),%edi
lea    0xec5(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e97(%rip),%rax
mov    (%rax),%edi
lea    0xee1(%rip),%rsi
lea    0xee7(%rip),%rdx
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e79(%rip),%rax
mov    (%rax),%edi
lea    0xed6(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e62(%rip),%rax
mov    (%rax),%edi
lea    0xeec(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e4b(%rip),%rax
mov    (%rax),%edi
lea    0xf04(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e34(%rip),%rax
mov    (%rax),%edi
lea    0xf22(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e1d(%rip),%rax
mov    (%rax),%edi
lea    0xf44(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2e06(%rip),%rax
mov    (%rax),%edi
lea    0xf68(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2def(%rip),%rax
mov    (%rax),%edi
lea    0xf91(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2dd8(%rip),%rax
mov    (%rax),%edi
lea    0xe8f(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2dc1(%rip),%rax
mov    (%rax),%edi
lea    0xfa4(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2daa(%rip),%rax
mov    (%rax),%edi
lea    0xfc9(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    0x2d93(%rip),%rax
mov    (%rax),%edi
lea    0xff3(%rip),%rsi
mov    $0x0,%al
call   1030 <fprintf@plt>
mov    $0x1,%eax
pop    %rbp
ret

x86 assembly (clang, -O2):
<usage>:
push   %r14
push   %rbx
push   %rax
mov    0x2ec5(%rip),%rbx
mov    (%rbx),%edi
lea    0xf7c(%rip),%r14
mov    %r14,%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xec9(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xeec(%rip),%rsi
lea    0xef2(%rip),%rdx
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xee8(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf05(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf24(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf49(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf72(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf9d(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xfcd(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
mov    %r14,%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xff2(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x101e(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x104f(%rip),%rsi
xor    %eax,%eax
call   1030 <fprintf@plt>
mov    $0x1,%eax
add    $0x8,%rsp
pop    %rbx
pop    %r14
ret

LLVM IR (-O0):
@stderr = global i32 0
@.str = [2 x i8] c"\0A\00"
@.str.1 = [51 x i8] c"Program: vcf_del (format the <deletion> vcf file)\0A\00"
@.str.2 = [13 x i8] c"Version: %s\0A\00"
@.str.3 = [6 x i8] c"0.2.7\00"
@.str.4 = [45 x i8] c"Contact: zz_zigzag <zz_zigzag@outlook.com>\0A\0A\00"
@.str.5 = [47 x i8] c"Usage: vcf_del [option] <in.vcf> <out.vcf>\0A\0A\00"
@.str.6 = [53 x i8] c"Options: -f remove the overlapping deletions\0A\00"
@.str.7 = [57 x i8] c" and only include the pure deletions.\0A\00"
@.str.8 = [59 x i8] c" -c STRING the chromosome to output(default all).\0A\00"
@.str.9 = [64 x i8] c" -n STRING the sample to output(need -g, default all).\0A\00"
@.str.10 = [65 x i8] c" -i INT the minimum length for deletions(default 0).\0A\00"
@.str.11 = [60 x i8] c" -g output with the genotype of individual.\0A\00"
@.str.12 = [65 x i8] c" -o only output the genotype of deletion existed\0A\00"
@.str.13 = [44 x i8] c" -s simple genotype: 0 or 1\0A\00"
define i32 @usage() {
%1 = load i32, i32* @stderr
%2 = call i32 (i32, i8*, ...) @fprintf(i32 %1, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = call i32 (i32, i8*, ...) @fprintf(i32 %3, i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = call i32 (i32, i8*, ...) @fprintf(i32 %5, i8* getelementptr inbounds ([13 x i8], [13 x i8]* @.str.2, i64 0, i64 0), i8* getelementptr inbounds ([6 x i8], [6 x i8]* @.str.3, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = call i32 (i32, i8*, ...) @fprintf(i32 %7, i8* getelementptr inbounds ([45 x i8], [45 x i8]* @.str.4, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = call i32 (i32, i8*, ...) @fprintf(i32 %9, i8* getelementptr inbounds ([47 x i8], [47 x i8]* @.str.5, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = call i32 (i32, i8*, ...) @fprintf(i32 %11, i8* getelementptr inbounds ([53 x i8], [53 x i8]* @.str.6, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = call i32 (i32, i8*, ...) @fprintf(i32 %13, i8* getelementptr inbounds ([57 x i8], [57 x i8]* @.str.7, i64 0, i64 0))
%15 = load i32, i32* @stderr
%16 = call i32 (i32, i8*, ...) @fprintf(i32 %15, i8* getelementptr inbounds ([59 x i8], [59 x i8]* @.str.8, i64 0, i64 0))
%17 = load i32, i32* @stderr
%18 = call i32 (i32, i8*, ...) @fprintf(i32 %17, i8* getelementptr inbounds ([64 x i8], [64 x i8]* @.str.9, i64 0, i64 0))
%19 = load i32, i32* @stderr
%20 = call i32 (i32, i8*, ...) @fprintf(i32 %19, i8* getelementptr inbounds ([65 x i8], [65 x i8]* @.str.10, i64 0, i64 0))
%21 = load i32, i32* @stderr
%22 = call i32 (i32, i8*, ...) @fprintf(i32 %21, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%23 = load i32, i32* @stderr
%24 = call i32 (i32, i8*, ...) @fprintf(i32 %23, i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.11, i64 0, i64 0))
%25 = load i32, i32* @stderr
%26 = call i32 (i32, i8*, ...) @fprintf(i32 %25, i8* getelementptr inbounds ([65 x i8], [65 x i8]* @.str.12, i64 0, i64 0))
%27 = load i32, i32* @stderr
%28 = call i32 (i32, i8*, ...) @fprintf(i32 %27, i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.13, i64 0, i64 0))
ret i32 1
}

LLVM IR (-O2):
@stderr = global i32 0
@.str = [2 x i8] c"\0A\00"
@.str.1 = [51 x i8] c"Program: vcf_del (format the <deletion> vcf file)\0A\00"
@.str.2 = [13 x i8] c"Version: %s\0A\00"
@.str.3 = [6 x i8] c"0.2.7\00"
@.str.4 = [45 x i8] c"Contact: zz_zigzag <zz_zigzag@outlook.com>\0A\0A\00"
@.str.5 = [47 x i8] c"Usage: vcf_del [option] <in.vcf> <out.vcf>\0A\0A\00"
@.str.6 = [53 x i8] c"Options: -f remove the overlapping deletions\0A\00"
@.str.7 = [57 x i8] c" and only include the pure deletions.\0A\00"
@.str.8 = [59 x i8] c" -c STRING the chromosome to output(default all).\0A\00"
@.str.9 = [64 x i8] c" -n STRING the sample to output(need -g, default all).\0A\00"
@.str.10 = [65 x i8] c" -i INT the minimum length for deletions(default 0).\0A\00"
@.str.11 = [60 x i8] c" -g output with the genotype of individual.\0A\00"
@.str.12 = [65 x i8] c" -o only output the genotype of deletion existed\0A\00"
@.str.13 = [44 x i8] c" -s simple genotype: 0 or 1\0A\00"
define i32 @usage() {
%1 = load i32, i32* @stderr
%2 = tail call i32 (i32, i8*, ...) @fprintf(i32 %1, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = tail call i32 (i32, i8*, ...) @fprintf(i32 %3, i8* getelementptr inbounds ([51 x i8], [51 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = tail call i32 (i32, i8*, ...) @fprintf(i32 %5, i8* getelementptr inbounds ([13 x i8], [13 x i8]* @.str.2, i64 0, i64 0), i8* getelementptr inbounds ([6 x i8], [6 x i8]* @.str.3, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = tail call i32 (i32, i8*, ...) @fprintf(i32 %7, i8* getelementptr inbounds ([45 x i8], [45 x i8]* @.str.4, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = tail call i32 (i32, i8*, ...) @fprintf(i32 %9, i8* getelementptr inbounds ([47 x i8], [47 x i8]* @.str.5, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = tail call i32 (i32, i8*, ...) @fprintf(i32 %11, i8* getelementptr inbounds ([53 x i8], [53 x i8]* @.str.6, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = tail call i32 (i32, i8*, ...) @fprintf(i32 %13, i8* getelementptr inbounds ([57 x i8], [57 x i8]* @.str.7, i64 0, i64 0))
%15 = load i32, i32* @stderr
%16 = tail call i32 (i32, i8*, ...) @fprintf(i32 %15, i8* getelementptr inbounds ([59 x i8], [59 x i8]* @.str.8, i64 0, i64 0))
%17 = load i32, i32* @stderr
%18 = tail call i32 (i32, i8*, ...) @fprintf(i32 %17, i8* getelementptr inbounds ([64 x i8], [64 x i8]* @.str.9, i64 0, i64 0))
%19 = load i32, i32* @stderr
%20 = tail call i32 (i32, i8*, ...) @fprintf(i32 %19, i8* getelementptr inbounds ([65 x i8], [65 x i8]* @.str.10, i64 0, i64 0))
%21 = load i32, i32* @stderr
%22 = tail call i32 (i32, i8*, ...) @fprintf(i32 %21, i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str, i64 0, i64 0))
%23 = load i32, i32* @stderr
%24 = tail call i32 (i32, i8*, ...) @fprintf(i32 %23, i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.11, i64 0, i64 0))
%25 = load i32, i32* @stderr
%26 = tail call i32 (i32, i8*, ...) @fprintf(i32 %25, i8* getelementptr inbounds ([65 x i8], [65 x i8]* @.str.12, i64 0, i64 0))
%27 = load i32, i32* @stderr
%28 = tail call i32 (i32, i8*, ...) @fprintf(i32 %27, i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.13, i64 0, i64 0))
ret i32 1
}