#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ exit(int);
int /*<<< orphan*/ printf(char *);
void usage() {
  printf("Usage: sam2cov [OPTIONS] fai_file sam_file\n");
  printf("Options:\n");
  printf("\t-r\tAligned with RUM? [0/1] Default: 0\n");
  printf("\t-s\tStrand: 1 for fwd, 2 for rev [0/1/2]. Default: 0\n");
  printf("\t\tPlease note: Reads are assumed to be in Illumina R2-R1 "
         "orientation!\n");
  printf("\t-e\tPaired end mode [0/1] Default: 1\n");
  printf("\t-p\tPrefix for coverage files. Default: Unique.cov, NU.cov\n");
  printf("\t-u\tPrint header for UCSC Genome browser? [0/1] Default: 0\n");
  printf("\t-h\tThis helpful message.\n");
  printf("\t-v\tPrint Version.\n");
  exit(1);
}


x86 assembly (clang, -O0):
<usage>:
push   %rbp
mov    %rsp,%rbp
lea    0xed5(%rip),%rdi
call   1030 <printf@plt>
lea    0xef5(%rip),%rdi
call   1030 <printf@plt>
lea    0xef3(%rip),%rdi
call   1030 <printf@plt>
lea    0xf0f(%rip),%rdi
call   1030 <printf@plt>
lea    0xf39(%rip),%rdi
call   1030 <printf@plt>
lea    0xf74(%rip),%rdi
call   1030 <printf@plt>
lea    0xf8e(%rip),%rdi
call   1030 <printf@plt>
lea    0xfbe(%rip),%rdi
call   1030 <printf@plt>
lea    0xfee(%rip),%rdi
call   1030 <printf@plt>
lea    0xffd(%rip),%rdi
call   1030 <printf@plt>
mov    $0x1,%edi
call   1040 <exit@plt>

x86 assembly (clang, -O2):
<usage>:
push   %rax
lea    0xed8(%rip),%rdi
call   1030 <puts@plt>
lea    0xef7(%rip),%rdi
call   1030 <puts@plt>
lea    0xef4(%rip),%rdi
call   1030 <puts@plt>
lea    0xf0f(%rip),%rdi
call   1030 <puts@plt>
lea    0xf38(%rip),%rdi
call   1030 <puts@plt>
lea    0xf72(%rip),%rdi
call   1030 <puts@plt>
lea    0xf8b(%rip),%rdi
call   1030 <puts@plt>
lea    0xfba(%rip),%rdi
call   1030 <puts@plt>
lea    0xfe9(%rip),%rdi
call   1030 <puts@plt>
lea    0xff7(%rip),%rdi
call   1030 <puts@plt>
mov    $0x1,%edi
call   1040 <exit@plt>

LLVM IR (-O0):
@.str = [44 x i8] c"Usage: sam2cov [OPTIONS] fai_file sam_file\0A\00"
@.str.1 = [10 x i8] c"Options:\0A\00"
@.str.2 = [40 x i8] c"\09-r\09Aligned with RUM? [0/1] Default: 0\0A\00"
@.str.3 = [54 x i8] c"\09-s\09Strand: 1 for fwd, 2 for rev [0/1/2]. Default: 0\0A\00"
@.str.4 = [71 x i8] c"\09\09Please note: Reads are assumed to be in Illumina R2-R1 orientation!\0A\00"
@.str.5 = [38 x i8] c"\09-e\09Paired end mode [0/1] Default: 1\0A\00"
@.str.6 = [60 x i8] c"\09-p\09Prefix for coverage files. Default: Unique.cov, NU.cov\0A\00"
@.str.7 = [60 x i8] c"\09-u\09Print header for UCSC Genome browser? [0/1] Default: 0\0A\00"
@.str.8 = [27 x i8] c"\09-h\09This helpful message.\0A\00"
@.str.9 = [20 x i8] c"\09-v\09Print Version.\0A\00"
define void @usage() {
%1 = call i32 @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str, i64 0, i64 0))
%2 = call i32 @printf(i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.1, i64 0, i64 0))
%3 = call i32 @printf(i8* getelementptr inbounds ([40 x i8], [40 x i8]* @.str.2, i64 0, i64 0))
%4 = call i32 @printf(i8* getelementptr inbounds ([54 x i8], [54 x i8]* @.str.3, i64 0, i64 0))
%5 = call i32 @printf(i8* getelementptr inbounds ([71 x i8], [71 x i8]* @.str.4, i64 0, i64 0))
%6 = call i32 @printf(i8* getelementptr inbounds ([38 x i8], [38 x i8]* @.str.5, i64 0, i64 0))
%7 = call i32 @printf(i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.6, i64 0, i64 0))
%8 = call i32 @printf(i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.7, i64 0, i64 0))
%9 = call i32 @printf(i8* getelementptr inbounds ([27 x i8], [27 x i8]* @.str.8, i64 0, i64 0))
%10 = call i32 @printf(i8* getelementptr inbounds ([20 x i8], [20 x i8]* @.str.9, i64 0, i64 0))
%11 = call i32 @exit(i32 1)
unreachable
}

LLVM IR (-O2):
@str = [43 x i8] c"Usage: sam2cov [OPTIONS] fai_file sam_file\00"
@str.10 = [9 x i8] c"Options:\00"
@str.11 = [39 x i8] c"\09-r\09Aligned with RUM? [0/1] Default: 0\00"
@str.12 = [53 x i8] c"\09-s\09Strand: 1 for fwd, 2 for rev [0/1/2]. Default: 0\00"
@str.13 = [70 x i8] c"\09\09Please note: Reads are assumed to be in Illumina R2-R1 orientation!\00"
@str.14 = [37 x i8] c"\09-e\09Paired end mode [0/1] Default: 1\00"
@str.15 = [59 x i8] c"\09-p\09Prefix for coverage files. Default: Unique.cov, NU.cov\00"
@str.16 = [59 x i8] c"\09-u\09Print header for UCSC Genome browser? [0/1] Default: 0\00"
@str.17 = [26 x i8] c"\09-h\09This helpful message.\00"
@str.18 = [19 x i8] c"\09-v\09Print Version.\00"
define void @usage() {
%1 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str, i64 0, i64 0))
%2 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([9 x i8], [9 x i8]* @str.10, i64 0, i64 0))
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([39 x i8], [39 x i8]* @str.11, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([53 x i8], [53 x i8]* @str.12, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([70 x i8], [70 x i8]* @str.13, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([37 x i8], [37 x i8]* @str.14, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([59 x i8], [59 x i8]* @str.15, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([59 x i8], [59 x i8]* @str.16, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([26 x i8], [26 x i8]* @str.17, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([19 x i8], [19 x i8]* @str.18, i64 0, i64 0))
%11 = tail call i32 @exit(i32 1)
unreachable
}