#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ printf(char *);
void printHelp() {
  printf("cpgStats Parses a CpG Dinucleotide file and outputs its statistical "
         "results. \n");
  printf("It can produce a json output and annotate a bed file. \n");
  printf("Two CpG Dinucleotides files could be compared using Intersection "
         "parameters. \n");
  printf("cpgStats -i cpgFile [-z] [-o results.json] [-s meth.values.json] [-b "
         "file.sorted.bed -a file.output.bed [-g] ] \n");
  printf("STATS:\n");
  printf("\t-i \t CpG Input file. \n");
  printf("\t-z \t CpG File is gzipped. \n");
  printf("\t-o \t JSON Output file. \n");
  printf("\t-s \t JSON Output Methylation Values File. \n");
  printf("ANNOTATION:\n");
  printf("\t-b \t SORTED BED Input file to annotate methylation per each "
         "window. \n");
  printf("\t-a \t Output annotated methylation file.\n");
  printf("INTERSECTION:\n");
  printf("\t-x \t CpG First File.\n");
  printf("\t-y \t CpG Second File.\n");
  printf("\t-g \t CpG Intersection Files are gzipped. \n");
  printf("VERSION:\n");
  printf("\t-v \t Program Version. \n");
}


x86 assembly (clang, -O0):
<printHelp>:
push   %rbp
mov    %rsp,%rbp
lea    0xee5(%rip),%rdi
call   1030 <printf@plt>
lea    0xf28(%rip),%rdi
call   1030 <printf@plt>
lea    0xf54(%rip),%rdi
call   1030 <printf@plt>
lea    0xf97(%rip),%rdi
call   1030 <printf@plt>
lea    0xffc(%rip),%rdi
call   1030 <printf@plt>
lea    0xff8(%rip),%rdi
call   1030 <printf@plt>
lea    0x1004(%rip),%rdi
call   1030 <printf@plt>
lea    0x1015(%rip),%rdi
call   1030 <printf@plt>
lea    0x1023(%rip),%rdi
call   1030 <printf@plt>
lea    0x1044(%rip),%rdi
call   1030 <printf@plt>
lea    0x1045(%rip),%rdi
call   1030 <printf@plt>
lea    0x1080(%rip),%rdi
call   1030 <printf@plt>
lea    0x109e(%rip),%rdi
call   1030 <printf@plt>
lea    0x10a1(%rip),%rdi
call   1030 <printf@plt>
lea    0x10ac(%rip),%rdi
call   1030 <printf@plt>
lea    0x10b8(%rip),%rdi
call   1030 <printf@plt>
lea    0x10d8(%rip),%rdi
call   1030 <printf@plt>
lea    0x10d6(%rip),%rdi
call   1030 <printf@plt>
pop    %rbp
ret

x86 assembly (clang, -O2):
<printHelp>:
push   %rax
lea    0xee8(%rip),%rdi
call   1030 <puts@plt>
lea    0xf2a(%rip),%rdi
call   1030 <puts@plt>
lea    0xf55(%rip),%rdi
call   1030 <puts@plt>
lea    0xf97(%rip),%rdi
call   1030 <puts@plt>
lea    0xffb(%rip),%rdi
call   1030 <puts@plt>
lea    0xff6(%rip),%rdi
call   1030 <puts@plt>
lea    0x1001(%rip),%rdi
call   1030 <puts@plt>
lea    0x1011(%rip),%rdi
call   1030 <puts@plt>
lea    0x101e(%rip),%rdi
call   1030 <puts@plt>
lea    0x103e(%rip),%rdi
call   1030 <puts@plt>
lea    0x103e(%rip),%rdi
call   1030 <puts@plt>
lea    0x1078(%rip),%rdi
call   1030 <puts@plt>
lea    0x1095(%rip),%rdi
call   1030 <puts@plt>
lea    0x1097(%rip),%rdi
call   1030 <puts@plt>
lea    0x10a1(%rip),%rdi
call   1030 <puts@plt>
lea    0x10ac(%rip),%rdi
call   1030 <puts@plt>
lea    0x10cb(%rip),%rdi
call   1030 <puts@plt>
lea    0x10c8(%rip),%rdi
pop    %rax
jmp    1030 <puts@plt>

LLVM IR (-O0):
@.str = [79 x i8] c"cpgStats Parses a CpG Dinucleotide file and outputs its statistical results. \0A\00"
@.str.1 = [56 x i8] c"It can produce a json output and annotate a bed file. \0A\00"
@.str.2 = [79 x i8] c"Two CpG Dinucleotides files could be compared using Intersection parameters. \0A\00"
@.str.3 = [113 x i8] c"cpgStats -i cpgFile [-z] [-o results.json] [-s meth.values.json] [-b file.sorted.bed -a file.output.bed [-g] ] \0A\00"
@.str.4 = [8 x i8] c"STATS:\0A\00"
@.str.5 = [24 x i8] c"\09-i \09 CpG Input file. \0A\00"
@.str.6 = [29 x i8] c"\09-z \09 CpG File is gzipped. \0A\00"
@.str.7 = [26 x i8] c"\09-o \09 JSON Output file. \0A\00"
@.str.8 = [45 x i8] c"\09-s \09 JSON Output Methylation Values File. \0A\00"
@.str.9 = [13 x i8] c"ANNOTATION:\0A\00"
@.str.10 = [71 x i8] c"\09-b \09 SORTED BED Input file to annotate methylation per each window. \0A\00"
@.str.11 = [42 x i8] c"\09-a \09 Output annotated methylation file.\0A\00"
@.str.12 = [15 x i8] c"INTERSECTION:\0A\00"
@.str.13 = [23 x i8] c"\09-x \09 CpG First File.\0A\00"
@.str.14 = [24 x i8] c"\09-y \09 CpG Second File.\0A\00"
@.str.15 = [44 x i8] c"\09-g \09 CpG Intersection Files are gzipped. \0A\00"
@.str.16 = [10 x i8] c"VERSION:\0A\00"
@.str.17 = [25 x i8] c"\09-v \09 Program Version. \0A\00"
define void @printHelp() {
%1 = call i32 @printf(i8* getelementptr inbounds ([79 x i8], [79 x i8]* @.str, i64 0, i64 0))
%2 = call i32 @printf(i8* getelementptr inbounds ([56 x i8], [56 x i8]* @.str.1, i64 0, i64 0))
%3 = call i32 @printf(i8* getelementptr inbounds ([79 x i8], [79 x i8]* @.str.2, i64 0, i64 0))
%4 = call i32 @printf(i8* getelementptr inbounds ([113 x i8], [113 x i8]* @.str.3, i64 0, i64 0))
%5 = call i32 @printf(i8* getelementptr inbounds ([8 x i8], [8 x i8]* @.str.4, i64 0, i64 0))
%6 = call i32 @printf(i8* getelementptr inbounds ([24 x i8], [24 x i8]* @.str.5, i64 0, i64 0))
%7 = call i32 @printf(i8* getelementptr inbounds ([29 x i8], [29 x i8]* @.str.6, i64 0, i64 0))
%8 = call i32 @printf(i8* getelementptr inbounds ([26 x i8], [26 x i8]* @.str.7, i64 0, i64 0))
%9 = call i32 @printf(i8* getelementptr inbounds ([45 x i8], [45 x i8]* @.str.8, i64 0, i64 0))
%10 = call i32 @printf(i8* getelementptr inbounds ([13 x i8], [13 x i8]* @.str.9, i64 0, i64 0))
%11 = call i32 @printf(i8* getelementptr inbounds ([71 x i8], [71 x i8]* @.str.10, i64 0, i64 0))
%12 = call i32 @printf(i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.11, i64 0, i64 0))
%13 = call i32 @printf(i8* getelementptr inbounds ([15 x i8], [15 x i8]* @.str.12, i64 0, i64 0))
%14 = call i32 @printf(i8* getelementptr inbounds ([23 x i8], [23 x i8]* @.str.13, i64 0, i64 0))
%15 = call i32 @printf(i8* getelementptr inbounds ([24 x i8], [24 x i8]* @.str.14, i64 0, i64 0))
%16 = call i32 @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.15, i64 0, i64 0))
%17 = call i32 @printf(i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.16, i64 0, i64 0))
%18 = call i32 @printf(i8* getelementptr inbounds ([25 x i8], [25 x i8]* @.str.17, i64 0, i64 0))
ret void
}

LLVM IR (-O2):
@str = [78 x i8] c"cpgStats Parses a CpG Dinucleotide file and outputs its statistical results. \00"
@str.18 = [55 x i8] c"It can produce a json output and annotate a bed file. \00"
@str.19 = [78 x i8] c"Two CpG Dinucleotides files could be compared using Intersection parameters. \00"
@str.20 = [112 x i8] c"cpgStats -i cpgFile [-z] [-o results.json] [-s meth.values.json] [-b file.sorted.bed -a file.output.bed [-g] ] \00"
@str.21 = [7 x i8] c"STATS:\00"
@str.22 = [23 x i8] c"\09-i \09 CpG Input file. \00"
@str.23 = [28 x i8] c"\09-z \09 CpG File is gzipped. \00"
@str.24 = [25 x i8] c"\09-o \09 JSON Output file. \00"
@str.25 = [44 x i8] c"\09-s \09 JSON Output Methylation Values File. \00"
@str.26 = [12 x i8] c"ANNOTATION:\00"
@str.27 = [70 x i8] c"\09-b \09 SORTED BED Input file to annotate methylation per each window. \00"
@str.28 = [41 x i8] c"\09-a \09 Output annotated methylation file.\00"
@str.29 = [14 x i8] c"INTERSECTION:\00"
@str.30 = [22 x i8] c"\09-x \09 CpG First File.\00"
@str.31 = [23 x i8] c"\09-y \09 CpG Second File.\00"
@str.32 = [43 x i8] c"\09-g \09 CpG Intersection Files are gzipped. \00"
@str.33 = [9 x i8] c"VERSION:\00"
@str.34 = [24 x i8] c"\09-v \09 Program Version. \00"
define void @printHelp() {
%1 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([78 x i8], [78 x i8]* @str, i64 0, i64 0))
%2 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([55 x i8], [55 x i8]* @str.18, i64 0, i64 0))
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([78 x i8], [78 x i8]* @str.19, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([112 x i8], [112 x i8]* @str.20, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([7 x i8], [7 x i8]* @str.21, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([23 x i8], [23 x i8]* @str.22, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([28 x i8], [28 x i8]* @str.23, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([25 x i8], [25 x i8]* @str.24, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([44 x i8], [44 x i8]* @str.25, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([12 x i8], [12 x i8]* @str.26, i64 0, i64 0))
%11 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([70 x i8], [70 x i8]* @str.27, i64 0, i64 0))
%12 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([41 x i8], [41 x i8]* @str.28, i64 0, i64 0))
%13 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([14 x i8], [14 x i8]* @str.29, i64 0, i64 0))
%14 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([22 x i8], [22 x i8]* @str.30, i64 0, i64 0))
%15 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([23 x i8], [23 x i8]* @str.31, i64 0, i64 0))
%16 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str.32, i64 0, i64 0))
%17 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([9 x i8], [9 x i8]* @str.33, i64 0, i64 0))
%18 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([24 x i8], [24 x i8]* @str.34, i64 0, i64 0))
ret void
}