void init(int s[][256]) {
  s['A']['A'] = 5;
  s['A']['C'] = -1;
  s['A']['G'] = -2;
  s['A']['T'] = -1;
  s['A']['-'] = -3;
  s['C']['A'] = -1;
  s['C']['C'] = 5;
  s['C']['G'] = -3;
  s['C']['T'] = -2;
  s['C']['-'] = -4;
  s['G']['A'] = -2;
  s['G']['C'] = -3;
  s['G']['G'] = 5;
  s['G']['T'] = -2;
  s['G']['-'] = -2;
  s['T']['A'] = -1;
  s['T']['C'] = -2;
  s['T']['G'] = -2;
  s['T']['T'] = 5;
  s['T']['-'] = -1;
  s['-']['A'] = -3;
  s['-']['C'] = -4;
  s['-']['G'] = -2;
  s['-']['T'] = -1;
}


x86 assembly (clang, -O0):
<init>:
push   %rbp
mov    %rsp,%rbp
mov    %rdi,-0x8(%rbp)
mov    -0x8(%rbp),%rax
movl   $0x5,0x10504(%rax)
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0x1050c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x1051c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0x10550(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffd,0x104b4(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0x10d04(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0x5,0x10d0c(%rax)
mov    -0x8(%rbp),%rax
movl   $0xfffffffd,0x10d1c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x10d50(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffc,0x10cb4(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x11d04(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffd,0x11d0c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0x5,0x11d1c(%rax)
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x11d50(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x11cb4(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0x15104(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x1510c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0x1511c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0x5,0x15150(%rax)
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0x150b4(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffd,0xb504(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffc,0xb50c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xfffffffe,0xb51c(%rax)
ff ff ff
mov    -0x8(%rbp),%rax
movl   $0xffffffff,0xb550(%rax)
ff ff ff
pop    %rbp
ret

x86 assembly (clang, -O2):
<init>:
movl   $0x5,0x10504(%rdi)
movl   $0xffffffff,0x1050c(%rdi)
ff ff ff
movl   $0xfffffffe,0x1051c(%rdi)
ff ff ff
movl   $0xffffffff,0x10550(%rdi)
ff ff ff
movl   $0xfffffffd,0x104b4(%rdi)
ff ff ff
movl   $0xffffffff,0x10d04(%rdi)
ff ff ff
movl   $0x5,0x10d0c(%rdi)
movl   $0xfffffffd,0x10d1c(%rdi)
ff ff ff
movl   $0xfffffffe,0x10d50(%rdi)
ff ff ff
movl   $0xfffffffc,0x10cb4(%rdi)
ff ff ff
movl   $0xfffffffe,0x11d04(%rdi)
ff ff ff
movl   $0xfffffffd,0x11d0c(%rdi)
ff ff ff
movl   $0x5,0x11d1c(%rdi)
movl   $0xfffffffe,0x11d50(%rdi)
ff ff ff
movl   $0xfffffffe,0x11cb4(%rdi)
ff ff ff
movl   $0xffffffff,0x15104(%rdi)
ff ff ff
movl   $0xfffffffe,0x1510c(%rdi)
ff ff ff
movl   $0xfffffffe,0x1511c(%rdi)
ff ff ff
movl   $0x5,0x15150(%rdi)
movl   $0xffffffff,0x150b4(%rdi)
ff ff ff
movl   $0xfffffffd,0xb504(%rdi)
ff ff ff
movl   $0xfffffffc,0xb50c(%rdi)
ff ff ff
movl   $0xfffffffe,0xb51c(%rdi)
ff ff ff
movl   $0xffffffff,0xb550(%rdi)
ff ff ff
ret

LLVM IR (-O0):
define void @init([256 x i32]* %0) {
%2 = alloca [256 x i32]*
store [256 x i32]* %0, [256 x i32]** %2
%3 = load [256 x i32]*, [256 x i32]** %2
%4 = getelementptr inbounds [256 x i32], [256 x i32]* %3, i64 65
%5 = getelementptr inbounds [256 x i32], [256 x i32]* %4, i64 0, i64 65
store i32 5, i32* %5
%6 = load [256 x i32]*, [256 x i32]** %2
%7 = getelementptr inbounds [256 x i32], [256 x i32]* %6, i64 65
%8 = getelementptr inbounds [256 x i32], [256 x i32]* %7, i64 0, i64 67
store i32 -1, i32* %8
%9 = load [256 x i32]*, [256 x i32]** %2
%10 = getelementptr inbounds [256 x i32], [256 x i32]* %9, i64 65
%11 = getelementptr inbounds [256 x i32], [256 x i32]* %10, i64 0, i64 71
store i32 -2, i32* %11
%12 = load [256 x i32]*, [256 x i32]** %2
%13 = getelementptr inbounds [256 x i32], [256 x i32]* %12, i64 65
%14 = getelementptr inbounds [256 x i32], [256 x i32]* %13, i64 0, i64 84
store i32 -1, i32* %14
%15 = load [256 x i32]*, [256 x i32]** %2
%16 = getelementptr inbounds [256 x i32], [256 x i32]* %15, i64 65
%17 = getelementptr inbounds [256 x i32], [256 x i32]* %16, i64 0, i64 45
store i32 -3, i32* %17
%18 = load [256 x i32]*, [256 x i32]** %2
%19 = getelementptr inbounds [256 x i32], [256 x i32]* %18, i64 67
%20 = getelementptr inbounds [256 x i32], [256 x i32]* %19, i64 0, i64 65
store i32 -1, i32* %20
%21 = load [256 x i32]*, [256 x i32]** %2
%22 = getelementptr inbounds [256 x i32], [256 x i32]* %21, i64 67
%23 = getelementptr inbounds [256 x i32], [256 x i32]* %22, i64 0, i64 67
store i32 5, i32* %23
%24 = load [256 x i32]*, [256 x i32]** %2
%25 = getelementptr inbounds [256 x i32], [256 x i32]* %24, i64 67
%26 = getelementptr inbounds [256 x i32], [256 x i32]* %25, i64 0, i64 71
store i32 -3, i32* %26
%27 = load [256 x i32]*, [256 x i32]** %2
%28 = getelementptr inbounds [256 x i32], [256 x i32]* %27, i64 67
%29 = getelementptr inbounds [256 x i32], [256 x i32]* %28, i64 0, i64 84
store i32 -2, i32* %29
%30 = load [256 x i32]*, [256 x i32]** %2
%31 = getelementptr inbounds [256 x i32], [256 x i32]* %30, i64 67
%32 = getelementptr inbounds [256 x i32], [256 x i32]* %31, i64 0, i64 45
store i32 -4, i32* %32
%33 = load [256 x i32]*, [256 x i32]** %2
%34 = getelementptr inbounds [256 x i32], [256 x i32]* %33, i64 71
%35 = getelementptr inbounds [256 x i32], [256 x i32]* %34, i64 0, i64 65
store i32 -2, i32* %35
%36 = load [256 x i32]*, [256 x i32]** %2
%37 = getelementptr inbounds [256 x i32], [256 x i32]* %36, i64 71
%38 = getelementptr inbounds [256 x i32], [256 x i32]* %37, i64 0, i64 67
store i32 -3, i32* %38
%39 = load [256 x i32]*, [256 x i32]** %2
%40 = getelementptr inbounds [256 x i32], [256 x i32]* %39, i64 71
%41 = getelementptr inbounds [256 x i32], [256 x i32]* %40, i64 0, i64 71
store i32 5, i32* %41
%42 = load [256 x i32]*, [256 x i32]** %2
%43 = getelementptr inbounds [256 x i32], [256 x i32]* %42, i64 71
%44 = getelementptr inbounds [256 x i32], [256 x i32]* %43, i64 0, i64 84
store i32 -2, i32* %44
%45 = load [256 x i32]*, [256 x i32]** %2
%46 = getelementptr inbounds [256 x i32], [256 x i32]* %45, i64 71
%47 = getelementptr inbounds [256 x i32], [256 x i32]* %46, i64 0, i64 45
store i32 -2, i32* %47
%48 = load [256 x i32]*, [256 x i32]** %2
%49 = getelementptr inbounds [256 x i32], [256 x i32]* %48, i64 84
%50 = getelementptr inbounds [256 x i32], [256 x i32]* %49, i64 0, i64 65
store i32 -1, i32* %50
%51 = load [256 x i32]*, [256 x i32]** %2
%52 = getelementptr inbounds [256 x i32], [256 x i32]* %51, i64 84
%53 = getelementptr inbounds [256 x i32], [256 x i32]* %52, i64 0, i64 67
store i32 -2, i32* %53
%54 = load [256 x i32]*, [256 x i32]** %2
%55 = getelementptr inbounds [256 x i32], [256 x i32]* %54, i64 84
%56 = getelementptr inbounds [256 x i32], [256 x i32]* %55, i64 0, i64 71
store i32 -2, i32* %56
%57 = load [256 x i32]*, [256 x i32]** %2
%58 = getelementptr inbounds [256 x i32], [256 x i32]* %57, i64 84
%59 = getelementptr inbounds [256 x i32], [256 x i32]* %58, i64 0, i64 84
store i32 5, i32* %59
%60 = load [256 x i32]*, [256 x i32]** %2
%61 = getelementptr inbounds [256 x i32], [256 x i32]* %60, i64 84
%62 = getelementptr inbounds [256 x i32], [256 x i32]* %61, i64 0, i64 45
store i32 -1, i32* %62
%63 = load [256 x i32]*, [256 x i32]** %2
%64 = getelementptr inbounds [256 x i32], [256 x i32]* %63, i64 45
%65 = getelementptr inbounds [256 x i32], [256 x i32]* %64, i64 0, i64 65
store i32 -3, i32* %65
%66 = load [256 x i32]*, [256 x i32]** %2
%67 = getelementptr inbounds [256 x i32], [256 x i32]* %66, i64 45
%68 = getelementptr inbounds [256 x i32], [256 x i32]* %67, i64 0, i64 67
store i32 -4, i32* %68
%69 = load [256 x i32]*, [256 x i32]** %2
%70 = getelementptr inbounds [256 x i32], [256 x i32]* %69, i64 45
%71 = getelementptr inbounds [256 x i32], [256 x i32]* %70, i64 0, i64 71
store i32 -2, i32* %71
%72 = load [256 x i32]*, [256 x i32]** %2
%73 = getelementptr inbounds [256 x i32], [256 x i32]* %72, i64 45
%74 = getelementptr inbounds [256 x i32], [256 x i32]* %73, i64 0, i64 84
store i32 -1, i32* %74
ret void
}

LLVM IR (-O2):
define void @init([256 x i32]* writeonly %0) {
%2 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 65, i64 65
store i32 5, i32* %2
%3 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 65, i64 67
store i32 -1, i32* %3
%4 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 65, i64 71
store i32 -2, i32* %4
%5 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 65, i64 84
store i32 -1, i32* %5
%6 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 65, i64 45
store i32 -3, i32* %6
%7 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 67, i64 65
store i32 -1, i32* %7
%8 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 67, i64 67
store i32 5, i32* %8
%9 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 67, i64 71
store i32 -3, i32* %9
%10 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 67, i64 84
store i32 -2, i32* %10
%11 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 67, i64 45
store i32 -4, i32* %11
%12 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 71, i64 65
store i32 -2, i32* %12
%13 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 71, i64 67
store i32 -3, i32* %13
%14 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 71, i64 71
store i32 5, i32* %14
%15 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 71, i64 84
store i32 -2, i32* %15
%16 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 71, i64 45
store i32 -2, i32* %16
%17 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 84, i64 65
store i32 -1, i32* %17
%18 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 84, i64 67
store i32 -2, i32* %18
%19 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 84, i64 71
store i32 -2, i32* %19
%20 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 84, i64 84
store i32 5, i32* %20
%21 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 84, i64 45
store i32 -1, i32* %21
%22 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 45, i64 65
store i32 -3, i32* %22
%23 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 45, i64 67
store i32 -4, i32* %23
%24 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 45, i64 71
store i32 -2, i32* %24
%25 = getelementptr inbounds [256 x i32], [256 x i32]* %0, i64 45, i64 84
store i32 -1, i32* %25
ret void
}