#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ printf(char *);
void usage() {
  printf("usage: \norder seq1file seq2file [options]\n\n");
  printf("Options:\n");
  printf("-gs #  = Gap Start [default -100]\n");
  printf("-gc #  = Gap Continue [default -2]\n");
  printf("-bw #  = Barrel Width around conserved regions [default 15]\n");
  printf("-anc anchorfile  = specify an anchorfile to use [default no file]\n");
  printf("-out outfile  = write output to outfile [default screen]\n");
  printf("-bin   = write output in BINary format [default text]\n");
  printf("-mfa   = write output in MultiFAsta format [default text]\n");
  printf("-s1 # # = use the given substring of the query [default whole]\n");
  printf("-s2 # # = use the givensubstring of the dbase [default whole]\n");
  printf("-version = prints the version of this ORDER\n");
}


x86 assembly (clang, -O0):
<usage>:
push   %rbp
mov    %rsp,%rbp
lea    0xee5(%rip),%rdi
call   1030 <printf@plt>
lea    0xf05(%rip),%rdi
call   1030 <printf@plt>
lea    0xf03(%rip),%rdi
call   1030 <printf@plt>
lea    0xf1a(%rip),%rdi
call   1030 <printf@plt>
lea    0xf32(%rip),%rdi
call   1030 <printf@plt>
lea    0xf63(%rip),%rdi
call   1030 <printf@plt>
lea    0xf9a(%rip),%rdi
call   1030 <printf@plt>
lea    0xfc8(%rip),%rdi
call   1030 <printf@plt>
lea    0xff3(%rip),%rdi
call   1030 <printf@plt>
lea    0x1022(%rip),%rdi
call   1030 <printf@plt>
lea    0x1056(%rip),%rdi
call   1030 <printf@plt>
lea    0x1089(%rip),%rdi
call   1030 <printf@plt>
pop    %rbp
ret

x86 assembly (clang, -O2):
<usage>:
push   %rax
lea    0xee8(%rip),%rdi
call   1030 <puts@plt>
lea    0xf07(%rip),%rdi
call   1030 <puts@plt>
lea    0xf04(%rip),%rdi
call   1030 <puts@plt>
lea    0xf1a(%rip),%rdi
call   1030 <puts@plt>
lea    0xf31(%rip),%rdi
call   1030 <puts@plt>
lea    0xf61(%rip),%rdi
call   1030 <puts@plt>
lea    0xf97(%rip),%rdi
call   1030 <puts@plt>
lea    0xfc4(%rip),%rdi
call   1030 <puts@plt>
lea    0xfee(%rip),%rdi
call   1030 <puts@plt>
lea    0x101c(%rip),%rdi
call   1030 <puts@plt>
lea    0x104f(%rip),%rdi
call   1030 <puts@plt>
lea    0x1081(%rip),%rdi
pop    %rax
jmp    1030 <puts@plt>

LLVM IR (-O0):
@.str = [44 x i8] c"usage: \0Aorder seq1file seq2file [options]\0A\0A\00"
@.str.1 = [10 x i8] c"Options:\0A\00"
@.str.2 = [35 x i8] c"-gs # = Gap Start [default -100]\0A\00"
@.str.3 = [36 x i8] c"-gc # = Gap Continue [default -2]\0A\00"
@.str.4 = [61 x i8] c"-bw # = Barrel Width around conserved regions [default 15]\0A\00"
@.str.5 = [67 x i8] c"-anc anchorfile = specify an anchorfile to use [default no file]\0A\00"
@.str.6 = [58 x i8] c"-out outfile = write output to outfile [default screen]\0A\00"
@.str.7 = [55 x i8] c"-bin = write output in BINary format [default text]\0A\00"
@.str.8 = [59 x i8] c"-mfa = write output in MultiFAsta format [default text]\0A\00"
@.str.9 = [64 x i8] c"-s1 # # = use the given substring of the query [default whole]\0A\00"
@.str.10 = [63 x i8] c"-s2 # # = use the givensubstring of the dbase [default whole]\0A\00"
@.str.11 = [45 x i8] c"-version = prints the version of this ORDER\0A\00"
define void @usage() {
%1 = call i32 @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str, i64 0, i64 0))
%2 = call i32 @printf(i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.1, i64 0, i64 0))
%3 = call i32 @printf(i8* getelementptr inbounds ([35 x i8], [35 x i8]* @.str.2, i64 0, i64 0))
%4 = call i32 @printf(i8* getelementptr inbounds ([36 x i8], [36 x i8]* @.str.3, i64 0, i64 0))
%5 = call i32 @printf(i8* getelementptr inbounds ([61 x i8], [61 x i8]* @.str.4, i64 0, i64 0))
%6 = call i32 @printf(i8* getelementptr inbounds ([67 x i8], [67 x i8]* @.str.5, i64 0, i64 0))
%7 = call i32 @printf(i8* getelementptr inbounds ([58 x i8], [58 x i8]* @.str.6, i64 0, i64 0))
%8 = call i32 @printf(i8* getelementptr inbounds ([55 x i8], [55 x i8]* @.str.7, i64 0, i64 0))
%9 = call i32 @printf(i8* getelementptr inbounds ([59 x i8], [59 x i8]* @.str.8, i64 0, i64 0))
%10 = call i32 @printf(i8* getelementptr inbounds ([64 x i8], [64 x i8]* @.str.9, i64 0, i64 0))
%11 = call i32 @printf(i8* getelementptr inbounds ([63 x i8], [63 x i8]* @.str.10, i64 0, i64 0))
%12 = call i32 @printf(i8* getelementptr inbounds ([45 x i8], [45 x i8]* @.str.11, i64 0, i64 0))
ret void
}

LLVM IR (-O2):
@str = [43 x i8] c"usage: \0Aorder seq1file seq2file [options]\0A\00"
@str.12 = [9 x i8] c"Options:\00"
@str.13 = [34 x i8] c"-gs # = Gap Start [default -100]\00"
@str.14 = [35 x i8] c"-gc # = Gap Continue [default -2]\00"
@str.15 = [60 x i8] c"-bw # = Barrel Width around conserved regions [default 15]\00"
@str.16 = [66 x i8] c"-anc anchorfile = specify an anchorfile to use [default no file]\00"
@str.17 = [57 x i8] c"-out outfile = write output to outfile [default screen]\00"
@str.18 = [54 x i8] c"-bin = write output in BINary format [default text]\00"
@str.19 = [58 x i8] c"-mfa = write output in MultiFAsta format [default text]\00"
@str.20 = [63 x i8] c"-s1 # # = use the given substring of the query [default whole]\00"
@str.21 = [62 x i8] c"-s2 # # = use the givensubstring of the dbase [default whole]\00"
@str.22 = [44 x i8] c"-version = prints the version of this ORDER\00"
define void @usage() {
%1 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str, i64 0, i64 0))
%2 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([9 x i8], [9 x i8]* @str.12, i64 0, i64 0))
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([34 x i8], [34 x i8]* @str.13, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([35 x i8], [35 x i8]* @str.14, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([60 x i8], [60 x i8]* @str.15, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([66 x i8], [66 x i8]* @str.16, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([57 x i8], [57 x i8]* @str.17, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([54 x i8], [54 x i8]* @str.18, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([58 x i8], [58 x i8]* @str.19, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([63 x i8], [63 x i8]* @str.20, i64 0, i64 0))
%11 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([62 x i8], [62 x i8]* @str.21, i64 0, i64 0))
%12 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([44 x i8], [44 x i8]* @str.22, i64 0, i64 0))
ret void
}