#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ EXIT_FAILURE;
int /*<<< orphan*/ exit(int /*<<< orphan*/);
int /*<<< orphan*/ printf(char *);
void print_help() {
  printf("Usage: ./libssa_example [options]\n");
  printf("Commandline options:\n");
  printf("  -N             Number of used threads\n");
  printf("  -O             Gap open costs (unsigned)\n");
  printf("  -E             Gap extension costs (unsigned)\n");
  printf("  -M             Scoring matrix name "
         "(BLOSUM(45|50|62|80|90)|PAM(30|70|250))\n");
  printf("  -i             Query file (FASTA format)\n");
  printf("  -d             Database file (FASTA format)\n");
  printf("  -c             Number of returned hits\n");
  printf("  -t             SW oder NW for local or global alignment\n");
  printf("  -b             Bit-width for the main search (in case of an "
         "overflow a fallback to the next bigger bit-width is used\n");
  printf("  -s             AVX2|SSE41|SSE2 decides which SIMD implementation "
         "is used (SSE2 does not support local alignments)\n");
  printf("\n");
  exit(EXIT_FAILURE);
}


x86 assembly (clang, -O0):
<print_help>:
push   %rbp
mov    %rsp,%rbp
lea    0xed5(%rip),%rdi
call   1030 <printf@plt>
lea    0xeec(%rip),%rdi
call   1030 <printf@plt>
lea    0xef6(%rip),%rdi
call   1030 <printf@plt>
lea    0xf13(%rip),%rdi
call   1030 <printf@plt>
lea    0xf33(%rip),%rdi
call   1030 <printf@plt>
lea    0xf58(%rip),%rdi
call   1030 <printf@plt>
lea    0xf9a(%rip),%rdi
call   1030 <printf@plt>
lea    0xfba(%rip),%rdi
call   1030 <printf@plt>
lea    0xfdd(%rip),%rdi
call   1030 <printf@plt>
lea    0xffb(%rip),%rdi
call   1030 <printf@plt>
lea    0x102a(%rip),%rdi
call   1030 <printf@plt>
lea    0x1096(%rip),%rdi
call   1030 <printf@plt>
lea    0xf50(%rip),%rdi
call   1030 <printf@plt>
mov    0x2e19(%rip),%rax
mov    (%rax),%edi
call   1040 <exit@plt>

x86 assembly (clang, -O2):
<print_help>:
push   %rax
lea    0xec8(%rip),%rdi
call   1040 <puts@plt>
lea    0xede(%rip),%rdi
call   1040 <puts@plt>
lea    0xee7(%rip),%rdi
call   1040 <puts@plt>
lea    0xf03(%rip),%rdi
call   1040 <puts@plt>
lea    0xf22(%rip),%rdi
call   1040 <puts@plt>
lea    0xf46(%rip),%rdi
call   1040 <puts@plt>
lea    0xf87(%rip),%rdi
call   1040 <puts@plt>
lea    0xfa6(%rip),%rdi
call   1040 <puts@plt>
lea    0xfc8(%rip),%rdi
call   1040 <puts@plt>
lea    0xfe5(%rip),%rdi
call   1040 <puts@plt>
lea    0x1013(%rip),%rdi
call   1040 <puts@plt>
lea    0x107e(%rip),%rdi
call   1040 <puts@plt>
mov    $0xa,%edi
call   1030 <putchar@plt>
mov    0x2e0e(%rip),%rax
mov    (%rax),%edi
call   1050 <exit@plt>

LLVM IR (-O0):
@.str = [35 x i8] c"Usage: ./libssa_example [options]\0A\00"
@.str.1 = [22 x i8] c"Commandline options:\0A\00"
@.str.2 = [41 x i8] c" -N Number of used threads\0A\00"
@.str.3 = [44 x i8] c" -O Gap open costs (unsigned)\0A\00"
@.str.4 = [49 x i8] c" -E Gap extension costs (unsigned)\0A\00"
@.str.5 = [78 x i8] c" -M Scoring matrix name (BLOSUM(45|50|62|80|90)|PAM(30|70|250))\0A\00"
@.str.6 = [44 x i8] c" -i Query file (FASTA format)\0A\00"
@.str.7 = [47 x i8] c" -d Database file (FASTA format)\0A\00"
@.str.8 = [42 x i8] c" -c Number of returned hits\0A\00"
@.str.9 = [59 x i8] c" -t SW oder NW for local or global alignment\0A\00"
@.str.10 = [120 x i8] c" -b Bit-width for the main search (in case of an overflow a fallback to the next bigger bit-width is used\0A\00"
@.str.11 = [117 x i8] c" -s AVX2|SSE41|SSE2 decides which SIMD implementation is used (SSE2 does not support local alignments)\0A\00"
@.str.12 = [2 x i8] c"\0A\00"
@EXIT_FAILURE = global i32 0
define void @print_help() {
%1 = call i32 @printf(i8* getelementptr inbounds ([35 x i8], [35 x i8]* @.str, i64 0, i64 0))
%2 = call i32 @printf(i8* getelementptr inbounds ([22 x i8], [22 x i8]* @.str.1, i64 0, i64 0))
%3 = call i32 @printf(i8* getelementptr inbounds ([41 x i8], [41 x i8]* @.str.2, i64 0, i64 0))
%4 = call i32 @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.3, i64 0, i64 0))
%5 = call i32 @printf(i8* getelementptr inbounds ([49 x i8], [49 x i8]* @.str.4, i64 0, i64 0))
%6 = call i32 @printf(i8* getelementptr inbounds ([78 x i8], [78 x i8]* @.str.5, i64 0, i64 0))
%7 = call i32 @printf(i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.6, i64 0, i64 0))
%8 = call i32 @printf(i8* getelementptr inbounds ([47 x i8], [47 x i8]* @.str.7, i64 0, i64 0))
%9 = call i32 @printf(i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.8, i64 0, i64 0))
%10 = call i32 @printf(i8* getelementptr inbounds ([59 x i8], [59 x i8]* @.str.9, i64 0, i64 0))
%11 = call i32 @printf(i8* getelementptr inbounds ([120 x i8], [120 x i8]* @.str.10, i64 0, i64 0))
%12 = call i32 @printf(i8* getelementptr inbounds ([117 x i8], [117 x i8]* @.str.11, i64 0, i64 0))
%13 = call i32 @printf(i8* getelementptr inbounds ([2 x i8], [2 x i8]* @.str.12, i64 0, i64 0))
%14 = load i32, i32* @EXIT_FAILURE
%15 = call i32 @exit(i32 %14)
unreachable
}

LLVM IR (-O2):
@EXIT_FAILURE = global i32 0
@str = [34 x i8] c"Usage: ./libssa_example [options]\00"
@str.13 = [21 x i8] c"Commandline options:\00"
@str.14 = [40 x i8] c" -N Number of used threads\00"
@str.15 = [43 x i8] c" -O Gap open costs (unsigned)\00"
@str.16 = [48 x i8] c" -E Gap extension costs (unsigned)\00"
@str.17 = [77 x i8] c" -M Scoring matrix name (BLOSUM(45|50|62|80|90)|PAM(30|70|250))\00"
@str.18 = [43 x i8] c" -i Query file (FASTA format)\00"
@str.19 = [46 x i8] c" -d Database file (FASTA format)\00"
@str.20 = [41 x i8] c" -c Number of returned hits\00"
@str.21 = [58 x i8] c" -t SW oder NW for local or global alignment\00"
@str.22 = [119 x i8] c" -b Bit-width for the main search (in case of an overflow a fallback to the next bigger bit-width is used\00"
@str.23 = [116 x i8] c" -s AVX2|SSE41|SSE2 decides which SIMD implementation is used (SSE2 does not support local alignments)\00"
define void @print_help() {
%1 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([34 x i8], [34 x i8]* @str, i64 0, i64 0))
%2 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([21 x i8], [21 x i8]* @str.13, i64 0, i64 0))
%3 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([40 x i8], [40 x i8]* @str.14, i64 0, i64 0))
%4 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str.15, i64 0, i64 0))
%5 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([48 x i8], [48 x i8]* @str.16, i64 0, i64 0))
%6 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([77 x i8], [77 x i8]* @str.17, i64 0, i64 0))
%7 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([43 x i8], [43 x i8]* @str.18, i64 0, i64 0))
%8 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([46 x i8], [46 x i8]* @str.19, i64 0, i64 0))
%9 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([41 x i8], [41 x i8]* @str.20, i64 0, i64 0))
%10 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([58 x i8], [58 x i8]* @str.21, i64 0, i64 0))
%11 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([119 x i8], [119 x i8]* @str.22, i64 0, i64 0))
%12 = tail call i32 @puts(i8* dereferenceable(1) getelementptr inbounds ([116 x i8], [116 x i8]* @str.23, i64 0, i64 0))
%13 = tail call i32 @putchar(i32 10)
%14 = load i32, i32* @EXIT_FAILURE
%15 = tail call i32 @exit(i32 %14)
unreachable
}