#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ exit(int);
int /*<<< orphan*/ fprintf(int /*<<< orphan*/, char *);
int /*<<< orphan*/ stdout;
void print_help(int exit_value) {
  fprintf(stdout, "Usage: ./primer3_masker [OPTIONS] <INPUTFILE>\n");
  fprintf(stdout, "Options:\n");
  fprintf(stdout, "    -h, --help                   - print this usage screen "
                  "and exit\n\n");
  fprintf(stdout, "    -p, --probability_cutoff     - masking cutoff [0, 1] "
                  "(default: >=0.1)\n");
  fprintf(stdout, "    -lh, --kmer_lists_path       - path to the kmer list "
                  "files (default: ../kmer_lists/)\n");
  fprintf(stdout,
          "    -lp, --list_prefix           - prefix of the k-mer lists to use "
          "with default model (default: homo_sapiens)\n\n");
  fprintf(stdout,
          "    -a, --absolute_value_cutoff  - masking cutoff based on k-mer "
          "count; requires a single list name, defined with -l\n");
  fprintf(stdout, "    -l, --list                   - define a single k-mer "
                  "list for masking with absolute cutoff option -a\n\n");
  fprintf(stdout, "    -m5, --mask_5p               - nucleotides to mask in "
                  "5' direction (default: 1)\n");
  fprintf(stdout, "    -m3, --mask_3p               - nucleotides to mask in "
                  "3' direction (default: 0)\n");
  fprintf(stdout, "    -c, --masking_char           - character used for "
                  "masking (default: N)\n");
  fprintf(
      stdout,
      "    -s, --soft_mask              - use soft masking (default: false)\n");
  fprintf(stdout, "    -d, --masking_direction      - a strand to mask (fwd, "
                  "rev, both) (default: both)\n\n");
  exit(exit_value);
}


x86 assembly (clang, -O0):
<print_help>:
push   %rbp
mov    %rsp,%rbp
sub    $0x10,%rsp
mov    %edi,-0x4(%rbp)
mov    0x2eae(%rip),%rax
mov    (%rax),%edi
lea    0xec5(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e99(%rip),%rax
mov    (%rax),%edi
lea    0xedf(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e84(%rip),%rax
mov    (%rax),%edi
lea    0xed4(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e6f(%rip),%rax
mov    (%rax),%edi
lea    0xf05(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e5a(%rip),%rax
mov    (%rax),%edi
lea    0xf3b(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e45(%rip),%rax
mov    (%rax),%edi
lea    0xf80(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e30(%rip),%rax
mov    (%rax),%edi
lea    0xfdc(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e1b(%rip),%rax
mov    (%rax),%edi
lea    0x103d(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e06(%rip),%rax
mov    (%rax),%edi
lea    0x1093(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2df1(%rip),%rax
mov    (%rax),%edi
lea    0x10d3(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2ddc(%rip),%rax
mov    (%rax),%edi
lea    0x1113(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2dc7(%rip),%rax
mov    (%rax),%edi
lea    0x114a(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2db2(%rip),%rax
mov    (%rax),%edi
lea    0x117b(%rip),%rsi
call   1030 <fprintf@plt>
mov    -0x4(%rbp),%edi
call   1040 <exit@plt>

x86 assembly (clang, -O2):
<print_help>:
push   %rbp
push   %rbx
push   %rax
mov    %edi,%ebp
mov    0x2eb4(%rip),%rbx
mov    (%rbx),%edi
lea    0xecb(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xeec(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xee8(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf20(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf5d(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xfa9(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x100c(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x1074(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x10d1(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x1118(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x115f(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x119d(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x11d5(%rip),%rsi
call   1030 <fprintf@plt>
mov    %ebp,%edi
call   1040 <exit@plt>

LLVM IR (-O0):
@stdout = global i32 0
@.str = [47 x i8] c"Usage: ./primer3_masker [OPTIONS] <INPUTFILE>\0A\00"
@.str.1 = [10 x i8] c"Options:\0A\00"
@.str.2 = [70 x i8] c" -h, --help - print this usage screen and exit\0A\0A\00"
@.str.3 = [75 x i8] c" -p, --probability_cutoff - masking cutoff [0, 1] (default: >=0.1)\0A\00"
@.str.4 = [90 x i8] c" -lh, --kmer_lists_path - path to the kmer list files (default: ../kmer_lists/)\0A\00"
@.str.5 = [113 x i8] c" -lp, --list_prefix - prefix of the k-mer lists to use with default model (default: homo_sapiens)\0A\0A\00"
@.str.6 = [118 x i8] c" -a, --absolute_value_cutoff - masking cutoff based on k-mer count; requires a single list name, defined with -l\0A\00"
@.str.7 = [107 x i8] c" -l, --list - define a single k-mer list for masking with absolute cutoff option -a\0A\0A\00"
@.str.8 = [85 x i8] c" -m5, --mask_5p - nucleotides to mask in 5' direction (default: 1)\0A\00"
@.str.9 = [85 x i8] c" -m3, --mask_3p - nucleotides to mask in 3' direction (default: 0)\0A\00"
@.str.10 = [76 x i8] c" -c, --masking_char - character used for masking (default: N)\0A\00"
@.str.11 = [70 x i8] c" -s, --soft_mask - use soft masking (default: false)\0A\00"
@.str.12 = [87 x i8] c" -d, --masking_direction - a strand to mask (fwd, rev, both) (default: both)\0A\0A\00"
define void @print_help(i32 %0) {
%2 = alloca i32
store i32 %0, i32* %2
%3 = load i32, i32* @stdout
%4 = call i32 @fprintf(i32 %3, i8* getelementptr inbounds ([47 x i8], [47 x i8]* @.str, i64 0, i64 0))
%5 = load i32, i32* @stdout
%6 = call i32 @fprintf(i32 %5, i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.1, i64 0, i64 0))
%7 = load i32, i32* @stdout
%8 = call i32 @fprintf(i32 %7, i8* getelementptr inbounds ([70 x i8], [70 x i8]* @.str.2, i64 0, i64 0))
%9 = load i32, i32* @stdout
%10 = call i32 @fprintf(i32 %9, i8* getelementptr inbounds ([75 x i8], [75 x i8]* @.str.3, i64 0, i64 0))
%11 = load i32, i32* @stdout
%12 = call i32 @fprintf(i32 %11, i8* getelementptr inbounds ([90 x i8], [90 x i8]* @.str.4, i64 0, i64 0))
%13 = load i32, i32* @stdout
%14 = call i32 @fprintf(i32 %13, i8* getelementptr inbounds ([113 x i8], [113 x i8]* @.str.5, i64 0, i64 0))
%15 = load i32, i32* @stdout
%16 = call i32 @fprintf(i32 %15, i8* getelementptr inbounds ([118 x i8], [118 x i8]* @.str.6, i64 0, i64 0))
%17 = load i32, i32* @stdout
%18 = call i32 @fprintf(i32 %17, i8* getelementptr inbounds ([107 x i8], [107 x i8]* @.str.7, i64 0, i64 0))
%19 = load i32, i32* @stdout
%20 = call i32 @fprintf(i32 %19, i8* getelementptr inbounds ([85 x i8], [85 x i8]* @.str.8, i64 0, i64 0))
%21 = load i32, i32* @stdout
%22 = call i32 @fprintf(i32 %21, i8* getelementptr inbounds ([85 x i8], [85 x i8]* @.str.9, i64 0, i64 0))
%23 = load i32, i32* @stdout
%24 = call i32 @fprintf(i32 %23, i8* getelementptr inbounds ([76 x i8], [76 x i8]* @.str.10, i64 0, i64 0))
%25 = load i32, i32* @stdout
%26 = call i32 @fprintf(i32 %25, i8* getelementptr inbounds ([70 x i8], [70 x i8]* @.str.11, i64 0, i64 0))
%27 = load i32, i32* @stdout
%28 = call i32 @fprintf(i32 %27, i8* getelementptr inbounds ([87 x i8], [87 x i8]* @.str.12, i64 0, i64 0))
%29 = load i32, i32* %2
%30 = call i32 @exit(i32 %29)
unreachable
}

LLVM IR (-O2):
@stdout = global i32 0
@.str = [47 x i8] c"Usage: ./primer3_masker [OPTIONS] <INPUTFILE>\0A\00"
@.str.1 = [10 x i8] c"Options:\0A\00"
@.str.2 = [70 x i8] c" -h, --help - print this usage screen and exit\0A\0A\00"
@.str.3 = [75 x i8] c" -p, --probability_cutoff - masking cutoff [0, 1] (default: >=0.1)\0A\00"
@.str.4 = [90 x i8] c" -lh, --kmer_lists_path - path to the kmer list files (default: ../kmer_lists/)\0A\00"
@.str.5 = [113 x i8] c" -lp, --list_prefix - prefix of the k-mer lists to use with default model (default: homo_sapiens)\0A\0A\00"
@.str.6 = [118 x i8] c" -a, --absolute_value_cutoff - masking cutoff based on k-mer count; requires a single list name, defined with -l\0A\00"
@.str.7 = [107 x i8] c" -l, --list - define a single k-mer list for masking with absolute cutoff option -a\0A\0A\00"
@.str.8 = [85 x i8] c" -m5, --mask_5p - nucleotides to mask in 5' direction (default: 1)\0A\00"
@.str.9 = [85 x i8] c" -m3, --mask_3p - nucleotides to mask in 3' direction (default: 0)\0A\00"
@.str.10 = [76 x i8] c" -c, --masking_char - character used for masking (default: N)\0A\00"
@.str.11 = [70 x i8] c" -s, --soft_mask - use soft masking (default: false)\0A\00"
@.str.12 = [87 x i8] c" -d, --masking_direction - a strand to mask (fwd, rev, both) (default: both)\0A\0A\00"
define void @print_help(i32 %0) {
%2 = load i32, i32* @stdout
%3 = tail call i32 @fprintf(i32 %2, i8* getelementptr inbounds ([47 x i8], [47 x i8]* @.str, i64 0, i64 0))
%4 = load i32, i32* @stdout
%5 = tail call i32 @fprintf(i32 %4, i8* getelementptr inbounds ([10 x i8], [10 x i8]* @.str.1, i64 0, i64 0))
%6 = load i32, i32* @stdout
%7 = tail call i32 @fprintf(i32 %6, i8* getelementptr inbounds ([70 x i8], [70 x i8]* @.str.2, i64 0, i64 0))
%8 = load i32, i32* @stdout
%9 = tail call i32 @fprintf(i32 %8, i8* getelementptr inbounds ([75 x i8], [75 x i8]* @.str.3, i64 0, i64 0))
%10 = load i32, i32* @stdout
%11 = tail call i32 @fprintf(i32 %10, i8* getelementptr inbounds ([90 x i8], [90 x i8]* @.str.4, i64 0, i64 0))
%12 = load i32, i32* @stdout
%13 = tail call i32 @fprintf(i32 %12, i8* getelementptr inbounds ([113 x i8], [113 x i8]* @.str.5, i64 0, i64 0))
%14 = load i32, i32* @stdout
%15 = tail call i32 @fprintf(i32 %14, i8* getelementptr inbounds ([118 x i8], [118 x i8]* @.str.6, i64 0, i64 0))
%16 = load i32, i32* @stdout
%17 = tail call i32 @fprintf(i32 %16, i8* getelementptr inbounds ([107 x i8], [107 x i8]* @.str.7, i64 0, i64 0))
%18 = load i32, i32* @stdout
%19 = tail call i32 @fprintf(i32 %18, i8* getelementptr inbounds ([85 x i8], [85 x i8]* @.str.8, i64 0, i64 0))
%20 = load i32, i32* @stdout
%21 = tail call i32 @fprintf(i32 %20, i8* getelementptr inbounds ([85 x i8], [85 x i8]* @.str.9, i64 0, i64 0))
%22 = load i32, i32* @stdout
%23 = tail call i32 @fprintf(i32 %22, i8* getelementptr inbounds ([76 x i8], [76 x i8]* @.str.10, i64 0, i64 0))
%24 = load i32, i32* @stdout
%25 = tail call i32 @fprintf(i32 %24, i8* getelementptr inbounds ([70 x i8], [70 x i8]* @.str.11, i64 0, i64 0))
%26 = load i32, i32* @stdout
%27 = tail call i32 @fprintf(i32 %26, i8* getelementptr inbounds ([87 x i8], [87 x i8]* @.str.12, i64 0, i64 0))
%28 = tail call i32 @exit(i32 %0)
unreachable
}