#define NULL ((void *)0)
typedef unsigned long size_t; // Customize by platform.
typedef long intptr_t;
typedef unsigned long uintptr_t;
typedef long scalar_t__; // Either arithmetic or pointer type.
/* By default, we understand bool (as a convenience). */
typedef int bool;
#define false 0
#define true 1

/* Forward declarations */

/* Type definitions */

/* Variables and functions */
int /*<<< orphan*/ fprintf(int /*<<< orphan*/, char *);
int /*<<< orphan*/ stderr;
void usage(void) {
  fprintf(stderr, "\nUsage: CLAK-GWAS <arguments> [options]\n\n");
  fprintf(stderr, "Following arguments are mandatory:\n\n");
  fprintf(stderr,
          "  -cov <path>    base path to the file containing the covariates\n");
  fprintf(stderr, "  -phi <path>    base path to the file containing the "
                  "relationship matrix\n");
  fprintf(stderr,
          "  -snp <path>    base path to the file containing the SNPs\n");
  fprintf(stderr,
          "  -pheno <path>  base path to the file containing the phenotypes\n");
  fprintf(stderr, "  -out <path>    base path to the file where the output "
                  "will be stored\n\n");
  fprintf(stderr, "Following options might be given:\n\n");
  fprintf(stderr, "  -var [chol | eigen] Default is chol.\n");
  fprintf(stderr, "  -nths <num>         Default is 1 thread.\n");
  fprintf(stderr, "  -thres <num>        Default is 95(%%).\n");
  fprintf(stderr, "  -h                  Show this help and exit\n\n");
}


x86 assembly (clang, -O0):
<usage>:
push   %rbp
mov    %rsp,%rbp
mov    0x2ec5(%rip),%rax
mov    (%rax),%edi
lea    0xedc(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2eb0(%rip),%rax
mov    (%rax),%edi
lea    0xef1(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e9b(%rip),%rax
mov    (%rax),%edi
lea    0xf01(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e86(%rip),%rax
mov    (%rax),%edi
lea    0xf2e(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e71(%rip),%rax
mov    (%rax),%edi
lea    0xf64(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e5c(%rip),%rax
mov    (%rax),%edi
lea    0xf8b(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e47(%rip),%rax
mov    (%rax),%edi
lea    0xfb8(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e32(%rip),%rax
mov    (%rax),%edi
lea    0xfec(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e1d(%rip),%rax
mov    (%rax),%edi
lea    0xffb(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2e08(%rip),%rax
mov    (%rax),%edi
lea    0x100e(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2df3(%rip),%rax
mov    (%rax),%edi
lea    0x1025(%rip),%rsi
call   1030 <fprintf@plt>
mov    0x2dde(%rip),%rax
mov    (%rax),%edi
lea    0x103a(%rip),%rsi
call   1030 <fprintf@plt>
pop    %rbp
ret

x86 assembly (clang, -O2):
<usage>:
push   %rbx
mov    0x2ec8(%rip),%rbx
mov    (%rbx),%edi
lea    0xedf(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xefb(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf12(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf46(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xf83(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xfb1(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0xfe5(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x1020(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x1036(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x1050(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x106e(%rip),%rsi
call   1030 <fprintf@plt>
mov    (%rbx),%edi
lea    0x108a(%rip),%rsi
pop    %rbx
jmp    1030 <fprintf@plt>

LLVM IR (-O0):
@stderr = global i32 0
@.str = [42 x i8] c"\0AUsage: CLAK-GWAS <arguments> [options]\0A\0A\00"
@.str.1 = [37 x i8] c"Following arguments are mandatory:\0A\0A\00"
@.str.2 = [66 x i8] c" -cov <path> base path to the file containing the covariates\0A\00"
@.str.3 = [75 x i8] c" -phi <path> base path to the file containing the relationship matrix\0A\00"
@.str.4 = [60 x i8] c" -snp <path> base path to the file containing the SNPs\0A\00"
@.str.5 = [66 x i8] c" -pheno <path> base path to the file containing the phenotypes\0A\00"
@.str.6 = [73 x i8] c" -out <path> base path to the file where the output will be stored\0A\0A\00"
@.str.7 = [36 x i8] c"Following options might be given:\0A\0A\00"
@.str.8 = [40 x i8] c" -var [chol | eigen] Default is chol.\0A\00"
@.str.9 = [44 x i8] c" -nths <num> Default is 1 thread.\0A\00"
@.str.10 = [42 x i8] c" -thres <num> Default is 95(%%).\0A\00"
@.str.11 = [48 x i8] c" -h Show this help and exit\0A\0A\00"
define void @usage() {
%1 = load i32, i32* @stderr
%2 = call i32 @fprintf(i32 %1, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = call i32 @fprintf(i32 %3, i8* getelementptr inbounds ([37 x i8], [37 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = call i32 @fprintf(i32 %5, i8* getelementptr inbounds ([66 x i8], [66 x i8]* @.str.2, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = call i32 @fprintf(i32 %7, i8* getelementptr inbounds ([75 x i8], [75 x i8]* @.str.3, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = call i32 @fprintf(i32 %9, i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.4, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = call i32 @fprintf(i32 %11, i8* getelementptr inbounds ([66 x i8], [66 x i8]* @.str.5, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = call i32 @fprintf(i32 %13, i8* getelementptr inbounds ([73 x i8], [73 x i8]* @.str.6, i64 0, i64 0))
%15 = load i32, i32* @stderr
%16 = call i32 @fprintf(i32 %15, i8* getelementptr inbounds ([36 x i8], [36 x i8]* @.str.7, i64 0, i64 0))
%17 = load i32, i32* @stderr
%18 = call i32 @fprintf(i32 %17, i8* getelementptr inbounds ([40 x i8], [40 x i8]* @.str.8, i64 0, i64 0))
%19 = load i32, i32* @stderr
%20 = call i32 @fprintf(i32 %19, i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.9, i64 0, i64 0))
%21 = load i32, i32* @stderr
%22 = call i32 @fprintf(i32 %21, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.10, i64 0, i64 0))
%23 = load i32, i32* @stderr
%24 = call i32 @fprintf(i32 %23, i8* getelementptr inbounds ([48 x i8], [48 x i8]* @.str.11, i64 0, i64 0))
ret void
}

LLVM IR (-O2):
@stderr = global i32 0
@.str = [42 x i8] c"\0AUsage: CLAK-GWAS <arguments> [options]\0A\0A\00"
@.str.1 = [37 x i8] c"Following arguments are mandatory:\0A\0A\00"
@.str.2 = [66 x i8] c" -cov <path> base path to the file containing the covariates\0A\00"
@.str.3 = [75 x i8] c" -phi <path> base path to the file containing the relationship matrix\0A\00"
@.str.4 = [60 x i8] c" -snp <path> base path to the file containing the SNPs\0A\00"
@.str.5 = [66 x i8] c" -pheno <path> base path to the file containing the phenotypes\0A\00"
@.str.6 = [73 x i8] c" -out <path> base path to the file where the output will be stored\0A\0A\00"
@.str.7 = [36 x i8] c"Following options might be given:\0A\0A\00"
@.str.8 = [40 x i8] c" -var [chol | eigen] Default is chol.\0A\00"
@.str.9 = [44 x i8] c" -nths <num> Default is 1 thread.\0A\00"
@.str.10 = [42 x i8] c" -thres <num> Default is 95(%%).\0A\00"
@.str.11 = [48 x i8] c" -h Show this help and exit\0A\0A\00"
define void @usage() {
%1 = load i32, i32* @stderr
%2 = tail call i32 @fprintf(i32 %1, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str, i64 0, i64 0))
%3 = load i32, i32* @stderr
%4 = tail call i32 @fprintf(i32 %3, i8* getelementptr inbounds ([37 x i8], [37 x i8]* @.str.1, i64 0, i64 0))
%5 = load i32, i32* @stderr
%6 = tail call i32 @fprintf(i32 %5, i8* getelementptr inbounds ([66 x i8], [66 x i8]* @.str.2, i64 0, i64 0))
%7 = load i32, i32* @stderr
%8 = tail call i32 @fprintf(i32 %7, i8* getelementptr inbounds ([75 x i8], [75 x i8]* @.str.3, i64 0, i64 0))
%9 = load i32, i32* @stderr
%10 = tail call i32 @fprintf(i32 %9, i8* getelementptr inbounds ([60 x i8], [60 x i8]* @.str.4, i64 0, i64 0))
%11 = load i32, i32* @stderr
%12 = tail call i32 @fprintf(i32 %11, i8* getelementptr inbounds ([66 x i8], [66 x i8]* @.str.5, i64 0, i64 0))
%13 = load i32, i32* @stderr
%14 = tail call i32 @fprintf(i32 %13, i8* getelementptr inbounds ([73 x i8], [73 x i8]* @.str.6, i64 0, i64 0))
%15 = load i32, i32* @stderr
%16 = tail call i32 @fprintf(i32 %15, i8* getelementptr inbounds ([36 x i8], [36 x i8]* @.str.7, i64 0, i64 0))
%17 = load i32, i32* @stderr
%18 = tail call i32 @fprintf(i32 %17, i8* getelementptr inbounds ([40 x i8], [40 x i8]* @.str.8, i64 0, i64 0))
%19 = load i32, i32* @stderr
%20 = tail call i32 @fprintf(i32 %19, i8* getelementptr inbounds ([44 x i8], [44 x i8]* @.str.9, i64 0, i64 0))
%21 = load i32, i32* @stderr
%22 = tail call i32 @fprintf(i32 %21, i8* getelementptr inbounds ([42 x i8], [42 x i8]* @.str.10, i64 0, i64 0))
%23 = load i32, i32* @stderr
%24 = tail call i32 @fprintf(i32 %23, i8* getelementptr inbounds ([48 x i8], [48 x i8]* @.str.11, i64 0, i64 0))
ret void
}