Natural Language Processing for Clinical Text (2023)

Abstract: Learning from real-world clinical data has potential to promote the quality of care, improve the efficiency of healthcare systems, and support clinical research. As a large proportion of clinical information is recorded only in unstructured free-text format, applying NLP to process and understand the vast amount of clinical text generated in clinical encounters is essential. However, clinical text is known to be highly ambiguous, it contains complex professional terms requiring clinical expertise to understand and annotate, and it is written in different clinical contexts with distinct purposes. All these factors together make clinical NLP research both rewarding and challenging. In this tutorial, we will discuss the characteristics of clinical text and provide an overview of some of the tools and methods used to process it. We will also present a real-world example to show the effectiveness of different NLP methods in processing and understanding clinical text. Finally, we will discuss the strengths and limitations of large language models and their applications, evaluations, and extensions in clinical NLP.

## introduction learning from real-world clinical data has potential to promote the quality of care, improve the efficiency of healthcare systems, and support clinical research. as a large proportion of clinical information is recorded only in unstructured free-text format, applying nlp to process and understand the vast amount of clinical text generated in clinical encounters is essential. however, clinical text is known to be highly ambiguous, it contains complex professional terms requiring clinical expertise to understand and annotate, and it is written in different clinical contexts with distinct purposes. all these factors together make clinical nlp research both rewarding and challenging. in this tutorial, we will discuss the characteristics of clinical text and provide an overview of some of the tools and methods used to process it. we will also present a real-world example to show the effectiveness of different nlp methods in processing and understanding clinical text. finally, we will discuss the strengths and limitations of large language models and their applications, evaluations, and extensions in clinical nlp. ## learning objectives this three hour tutorial has several related learning objectives: ## target audience and prerequisites this tutorial targets nlp researchers (students and more experienced researchers) with an interest in, or curiosity about working with clinical text. the tutorial is designed to be accessible for anyone with an interest in nlp. ## outline the tutorial consists of three consecutive one hour sessions, described below.