 When using CLEAR transcripts vs. using all available transcripts, downstream analyses reveal more shared DEGs , improved Principal Component Analysis separation of cell type, and increased similarity between results across different input RNA amounts.
<meaning-changed>  When using CLEAR transcripts vs. using all available transcripts, downstream analyses reveal more shared DEGs , improved Principal Component Analysis separation of cell type, and increased similarity between results across different input RNA amounts.
 When using CLEAR transcripts vs. using all available transcripts, downstream analyses reveal more shared DEGs , improved Principal Component Analysis (PCA) separation, and yielded more DEGs between cell types. As proof-of-principle,