wanglab/gogpt-training-data huggingface dataset:
Protein: Phosducin-like protein (Eurofung) (Q5BH98)
Organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
Interaction partners:
- G-protein beta subunit
- T-complex protein 1 subunit eta
- T-complex protein 1 subunit epsilon
Sequence:
MSTAQDEFNQLFSNREKNLSHPEDRNNLSDNDPSPDPHDQDHFEHSDSEDMAAMTSRTTSYTVPNTRFEANTGPKGVIADAQAFERARRTNFRKSFVSGNSAAQRSHHHSSSKSSGDARLLHNSPPADGSGSDLDEDEDTFLRRWRESRMQELQSMKAKRPSARRRYYGSLETVDAAGYLDAIEKVPADQVVVVCLYDPESNTSALVEDCLHTIASRQQLVHFVKLHYEIAEMDNIEAPALLAYRGGDVFATIVQIPQQIPKGRSCSADSLEDLLKSHRVL
Protein: Transcription factor COE4 (Early B-cell factor 4) (EBF-4) (Olf-1/EBF-like 4) (O/E-4) (OE-4) (Q8K4J2)
Organism: Mus musculus (Mouse)
Function: Transcription factor. Positively modulates transcription, perhaps less strongly than other early B cell factor/EBF family proteins. Binds an EBF1/Olf-1 consensus site in vitro.
Subcellular location: Nucleus {ECO:0000305|PubMed:12139918}.
Interaction partners:
Sequence:
MFPAQDALPRGGLHLKEEPLLPSSLGSVRSWMQSAGILDSNTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLAMYDRQGQPVEVERTAFIDFVEKDREPGTEKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMSKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIIIGDNFFDGLQVVFGNVLLWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPSSNQELLLKRAADVAEALYSAPRAPAPLGPLAPSHPHPAVVGINAFSSPLAIAVGDTTPEPGYARSCGSASPRFAPSPGSQQSSYGSGLGAGLGSYGAPGVTGLGVPGSPSFLNGSTATSPFAIMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMICAVKQRSAFAPVLRPPSSPSQACPRAHREGLPDQPFEDTDKFHSAARGLQGLAYS
Protein: ATP-binding cassette sub-family D member 2 (EC 3.1.2.-) (EC 7.6.2.-) (Adrenoleukodystrophy-related protein) (Q9QY44)
Organism: Rattus norvegicus (Rat)
Function: ATP-dependent transporter of the ATP-binding cassette (ABC) family involved in the transport of very long chain fatty acid (VLCFA)-CoA from the cytosol to the peroxisome lumen (By similarity). Like ABCD1 seems to have fatty acyl-CoA thioesterase (ACOT) and ATPase activities, according to this model, VLCFA-CoA as free VLCFA is transpoted in an ATP-dependent manner into peroxisomes after the hydrolysis of VLCFA-CoA mediated by the ACOT activity of ABCD2 (By similarity). Shows overlapping substrate specificities with ABCD1 toward saturated fatty acids (FA) and monounsaturated FA (MUFA) but has a distinct substrate preference for shorter VLCFA (C22:0) and polyunsaturated fatty acid (PUFA) such as C22:6-CoA and C24:6-CoA (in vitro). Thus, plays a role in regulation of VLCFAs and energy metabolism namely, in the degradation and biosynthesis of fatty acids by beta-oxidation. However,the actual function of ABCD2 in vivo is still unclear (By similarity).
Subcellular location: Peroxisome membrane {ECO:0000269|PubMed:28258215}; Multi-pass membrane protein {ECO:0000255}.
Interaction partners:
- ATP-binding cassette sub-family D member 3
- ATP-binding cassette sub-family D member 1
- Peroxisomal biogenesis factor 19
- Peroxisomal membrane protein PEX13
- Peroxisomal membrane protein PEX16
- Peroxisomal membrane protein 4
- Peroxisome assembly protein 12
- Peroxisomal biogenesis factor 3
- Peroxisomal membrane protein PMP34
- Outer mitochondrial transmembrane helix translocase
Sequence:
MIHMLNAAAYRVKWTRSGAAKRAACLVAAAYALKTLYPILGRRLKQPGHRKAKAEDYPPAENRERLHCTEIICKKPAPGLNADFFKQLLELRKILFPKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLVKWLMIAVPATFVNSAIRYLECKLALAFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSPKFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYVWSGCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARNLLASGADAIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENNSKSRGGLELPLSDTLAIKGTVIDVDHGILCENVPIITPAGEVVASSLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVLYKPPPQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHEKGYTDRDLEHILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWRFEQLDTAIRLTLSEEKQKLESQLAGIPKMQQRLNELCKILGEDSVLKTIQTAEDTS
Protein: tRNA N6-adenosine threonylcarbamoyltransferase (EC 2.3.1.234) (Q9U0J7)
Organism: Plasmodium falciparum (isolate 3D7)
Interaction partners:
- non-specific serine/threonine protein kinase
- EKC/KEOPS complex subunit CGI121
- Threonylcarbamoyl-AMP synthase
Sequence:
MKNVSTHIAIYLFCYIFLIHYLCYTFKIDNIPIKNNKFSDILQRAVKNINKHLNKKNVNYDICKYRKIPKILLQTNNCKKKKKLNYIVGIENTCDDTCICVIDTDLNIIKNVIISHYKVVHSYEGVYPFFISSLNSLFLKHYVNKILDNIDPKHVICYGFSSCPGIAKNMEAAKNYIGEKKKQNENIKISAVNHIFAHILSPLFFNFYNDKHTYTNSAEYKNENIKADEEDDKIYLNISESIKNDKEHKNKIKNVLEVLNKNIITQEKLINLIEDDFFTYGSYVLNRIKKKKKTEENKLDDNKINNTEEKTVNEEKKDIHNETLNIIQTEYMKDGYLCILVSGGSTDVYKVQKDTKNAINVCKISTTMDITIGDVIDKVTRLLELPVGLGGGPFLEKEAQKYLTNLKSASSENLQNDPFQPFPNPFSTNNIIDFSFSGIYNHMSKIIKKLKSEKSFEKEKGRYAYYCQKNIFHHLLKQVNKIMYFSELHFNIKNVFIVGGVGCNNFLYQSLKDMAAKRDNEENQIKEYNRLRKRLRKKMKKINDEKLSVLKISKDSLKSDHDYNSSLSWKIYLKNLLKKRKSKDILSTFKLFNFDDFIKLKQQGSFLLDDTVFKKGTSPWSIYKTPLNLSRDNAAMIAFNTFLNLHNKTNLYDDTLDIDIKTTVKTKLENNFLLLSDIIIFDVMLQYYDNNKG
Protein: Histone-lysine N-methyltransferase Suv4-20 (EC 2.1.1.361) (EC 2.1.1.362) (Suppressor of variegation 4-20) (Su(var)4-20) (Q9W5E0)
Organism: Drosophila melanogaster (Fruit fly)
Function: Histone methyltransferase that specifically trimethylates 'Lys-20' of histone H4. H4 'Lys-20' trimethylation represents a specific tag for epigenetic transcriptional repression. Mainly functions in pericentric heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin in these regions. Acts as a dominant suppressor of position-effect variegation.
Subcellular location: Nucleus {ECO:0000305|PubMed:15145825}. Chromosome {ECO:0000305|PubMed:15145825}.
Interaction partners:
- Histone-lysine N-methyltransferase Set8
- Calmodulin-lysine N-methyltransferase
- Histone-lysine N-methyltransferase Set2
- Histone-lysine N-methyltransferase SETD1
- Histone-lysine N-methyltransferase Su
- Histone H4
- G9a, isoform B
- Histone-lysine N-methyltransferase E
- T-complex protein 1 subunit eta
Sequence:
MVVGSNHTRRGETGSRFTNSSSSSSTSGGPTASASSTTSVTSSLATNSTSTSTAAALLSSMSHKSHGPPPSAPPSAHHQTNQQHHQVAHSQPHATHYQQTNQHPSHHHQSHQSSNGSGGGSAGSGSGSGSVVSGLNGCNGSAVSRLSQSTGMSPRELSENDDLATSLILDPHLGFQTHKMNIRFRPLKVDTQQLKAIVDDFIHTQNYDIAIQRIYEGPWIPRHLKNKNKIATKRLHDHIVRYLRVFDKDSGFAIEACYRYTLEEQRGAKISSTKRWSKNDKIECLVGCIAELTEAEEAALLHSGKNDFSVMYSCRKNCAQLWLGPAAYINHDCRANCKFLATGRDTACVKVLRDIEVGEEITCFYGEDFFGDSNRYCECETCERRGTGAFAGKDDGLMLGLSMGLGLASSGPGNNGGYRLRETDNRINRIKSRANSTNSTSNSNSNTNDSTGPSETSSTNGLVASGGAGGATGAAMLPTPSQQSTGGKEATAAVSLLEKKLPNVVVSPLTMKELRQKGMTKYDAEMIMANAAYQQQHHHQHHFHHHHHHHHHHHNHGQHASTGAEATAAVQQMAAMQKPGVGGTGAAGNAGATTVSSVAAGAGSEVNGGRSTSLRKSMRVNSTSSSISTASADEVIAPVVAASISLPSKAPVVLMPRCKPAQMAIAALHQSQQRQLRRSERQKEKLTDGESSDTSSEQQKKEQKQQDHQLPQKMFSLAEEPQPEKSEEKQQEQQKRVTRNSAGRVGLVARLATAHNNNIATTTNSSSSSNKATTITNCNNHNSNNSSRINHNSNLSSRLSVKSRKPAPSEASSIPSSTSSENQQQQATRRSCSPTPAYKKNLLASFDPDPPSTQGIKEQLKDESVTYSPVKQKRSRRAAALAAAQSIHCEALGGFPTGSTGSQRKRAQAGEPTTSCSSTTISNVEPLLKTPERRLKLTLRMKRSPILDEVIELGTSLSNGGAGRGAPGSHREGTAGEGSVRSALNLTGSSSNGIEYEILRMEGISEHGNDDDEDEEEDDEEPAAEEEEEPPPKEELQLVNKKQRKKQRSRSRSSQRRSPAPSSVYGTPQKKRLRLIFGNESHTIDIPPAAAEGSGSGLDDLNSSGGGGDESFNASYASSTSLTVNTSSSSTSSSSGVGGATSTSAEPVDSSTVGPPIAAQSPSSTTSSSFQSACTSTTNSNSYFPNGKQRAAGEDSYAMHYYQLGKFAGTPSPGQGQAIVSSSSGSSGGGGSGAGFLSMPKHTFGTCALLAPTSFACLQNQPQISQQKTSSGGGAGVVPTSTSTGAVTSHHHTNNHHGQK
Protein: Lysosomal-associated membrane protein 2 (Lysosome-associated membrane glycoprotein 2 isoform X2) (A0A0R4IZ00)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Endosome membrane {ECO:0000256|ARBA:ARBA00004530}; Single-pass type I membrane protein {ECO:0000256|ARBA:ARBA00004530}. Lysosome membrane {ECO:0000256|PROSITE-ProRule:PRU00740}; Single-pass type I membrane protein {ECO:0000256|PROSITE-ProRule:PRU00740}.
Interaction partners:
Sequence:
MAVRGFLPLLFILLSGIVHADDMMTSPLPSTAELKTANLPLVIQTTSSTTSTTTTSRPSSTSTHSTLTTEPAAKTTTARTTVTTSAPTSTQSTSSSSTSATVTTLAPTTTGHNTTNSTTEPPTTTGHNTTNSTTDAPTTTHTNATVAPTPPPTTPSVPKPTVGNYSVKTDNVSDCLLAKMGLQFSFKISGNASLQTVNLDPNVTKVNGTCGSGGSDSSLFLTSKDITVHFVFTNDSQKFRLHALTLTVDLGNGNIFNDSNTNLSLWEASVGSSYMCRKEQSYNISDKLTLNTFELQVQPFDVKKNSFSTAEECFLDSDLSFLVPIAVGVALSFLIILVLISYLIGRRKSRTGYQSV
Protein: Complement C3 [Cleaved into: Complement C3 beta chain; Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c alpha' chain fragment 1; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment; Complement C3f fragment; Complement C3c alpha' chain fragment 2] (P98093)
Organism: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
Function: C3 plays a central role in the activation of the complement system. Its processing by C3 convertase is the central reaction in both classical and alternative complement pathways. After activation C3b can bind covalently, via its reactive thioester, to cell surface carbohydrates or immune aggregates.
Subcellular location: Secreted.
Interaction partners:
Sequence:
AALQVLSAPNLLRVGSNENIFVESQDHVGGPLNVKIMVKNHPTQSKELASKSVVLDQANNFQAMTQLVIQRGPLVDDPKQKQYVVLQAQFPDRLLEKVVLVSFQSGYIFIQTDKTIYTPASTVHYRVFSMTPGLEPLTREIFEDQEVAKNKEIAVSVEIMTPENITIFREIVNPDKGVKSGQFKLPDIVSFGTWHVVTRFQSTPQKTFSSEFEVKEYVLPSFEVSLTPAKAFFYVDDNDLTVDITARYLYGKEVTGTGYVVFGVITTESEKKSFPASLQRVEIKDGKGVACLKKEHITQTFPKIHDLVKQSIFVSVSVLTEGGGEMVEAEKRGIQIVTSPYSILFKRTPKYFKPGMPFDVSVYITNPDNSPAIGVEVEVTPDHAKGVTRANGFAKIPLNTVASATELVITVKTKDPGDPRQQTGGGTMKALPYRTSTKNFLHVGVDSNELKIGDPIKIDLNLGPTTIPNHDLTYMFLSRGQLVKVGRFKRQGNALVTLSVPVSKELLPSFRIVAYYHVGAADLVADSVWVDIKVSCMGSLKVTSTRPKASYEPRRAFSLTITGDPGAKVGLVAVDKGVYVLNSKHRLTQTKIWDTIEKHDTGCTAGGGADNMGVFYDAGLVFETNTAKGTGIRTDPSCPVSSRRRRAVTISDVITSMASKYHGLAKECCVDGMRDNTMGYTCDRRAQYISDGDVCVQAFLVCCTEMASKKIESKQDALLLSRSEEDDDDDAYMRSEDIVSRSQFPESWMWEDTNLPECPAQNKHCESTSVIRNNFLKDSITTWQITAISLSKTHGICVADPFEMIVLKEFFIDLKLPYSAVRNEQLEVKAILHNYSEDPIIVRVELMENGEVCSSASKKGKYRQEVNMDPMSTRVVPYVIIPMKLGLHSIEVKASVKNSGSNDGVKRDLRVVAEGVLVKKETNVLLNPVKHGGEQTSHIPSGVPRNQVPNSDADTLISVTAGEQTSVLVEQAISGDSLGSLIVQPVGCGEQNMIYMTLPVIATHYLDNTKKWEDIGLDKRNTAIKYINIGYQRQLAYRKEDGSYAAWVSRQSSTWLTAYVVKVFAMSSTLISVQENVLCTAVKWLILNTQQPDGIFNEFAPVIHAEMTGNVRGSDNDASMTAFVLIAMQEASSVCEQSVNSLPGSMAKAVAYLEKRLPHLTNPYAVAMTSYALANAGKLNKETLLKFASPQLDHWPVPGGYQYTLEATSYALLALVKVKAFEEAGPIVRWLNKQKKVGGGYGSTQSTIMVFQAVAEYWSHVKDLKDFDLNINLEVAGRASVTKWSINNKNQFHTRTDKVNSIDKDLTVKASGNGEATLSVVTLYYALPEEKDSDCESFDLSVTLTKMDKTSHEDAKESFMLTIEVLYKNSERDATMSILDIGLLTGFIVDTDDLNQLSKGRERYIEKFEMDKVLSERGSLILYLDKVSHKLEDRISFKIHRVQEVGVLQPAAVSVYEYYNQKRCVKFYHPQREGGTLSRLCLGDVCTCAEESCSMQKKGEPDVQRIDKACGAGLDYVYKATVVDSKLTTHTDTYTVKIDLVIKPGTDEGVEGKNRDFMGLAYCREALGLMQGKTYMIMGKSEDLHRVEDKGLLQYKYVLGEQTWIEYWPSQQECTSRDYREVCLGIDEFINQITTFGCPV
Protein: DNA-directed RNA polymerases I and III subunit RPAC1 (RNA polymerases I and III subunit AC1) (DNA-directed RNA polymerases I and III 40 kDa polypeptide) (AC40) (RPC39) (O94616)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I and III which synthesize ribosomal RNA precursors and small RNAs, such as 5S rRNA and tRNAs, respectively. RPAC1 is part of the Pol core element with the central large cleft and probably a clamp element that moves to open and close the cleft (By similarity).
Subcellular location: Nucleus {ECO:0000250|UniProtKB:O15160}.
Interaction partners:
- DNA-directed RNA polymerases I, II, and III subunit RPABC2
- DNA-directed RNA polymerase III subunit RPC10
- DNA-directed RNA polymerase III subunit rpc1
- DNA-directed RNA polymerase I subunit rpa1
- DNA-directed RNA polymerases I, II, and III subunit RPABC5
- DNA-directed RNA polymerase III subunit rpc8
- Probable DNA-directed RNA polymerase III subunit rpc6
- DNA-directed RNA polymerase III subunit rpc31
- DNA-directed RNA polymerase III subunit RPC2
- DNA-directed RNA polymerase III subunit rpc9
Sequence:
MAAVDRSRTEISVLSDRVTDVGSVDFPGYYFDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSLQNISSD
Protein: Stac-like, isoform U (A0A0B4LFI1)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Cell membrane, sarcolemma {ECO:0000256|ARBA:ARBA00004278}; Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004278}; Cytoplasmic side {ECO:0000256|ARBA:ARBA00004278}. Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
Interaction partners:
Sequence:
MGISAHAAPASFWNHPRRIRRTPTSDRDGVDQCRPWICRRKDRRPAHPAANRPPESRVCGPSSTFRWDDWAAPAPRTRERATDCARMCMCTSRIPYSVARICARTTSMHSSRPASRSSSFIRRPLTRRQRMAVGGVTRRLWRTMRVYTIHQGRGVRRARAAQAVAAYLRDRRARIGKGWPAQGHGVRISATEQWADKPVVRRPGDPTRRVAAGAVPVLAERLPKVTGSSVKSSSGRRSRRRRIFGWRGPRGGSLSPQGGSMASYNGVLKDYSHSSLNEAFKSQNNVNFKLIKTVSDFSETLSRLYEEHATALQVAVSNYRKKNAELRKERPACHLAIFQAWETFLQEVETDSQACNDVASVLSRQVSRPMLDKSFHRKVQSRKIFTHRESFETIIAKTEEKLSKCRVDYKQCHLAHRQNPSQHSLTEYIDAHNAYVQQLHATNGMLEAYHTDTLPQQMQELEEIHNDLVAIVSDSLMQGAEVIAGKANDQAKRYNSLSNQCAAVSPQQDLVNFVRLLAQPSQAQKIPRRLFASPQAEVGEEAGDHNEMTPCLRNELVFDRHSTLSQRSALESLKREAIELELQIRQLQDSIEALNRTQTRGIEGQLYNKVNELQEDLSMKKFDLRAKQIHLAAIRAQKDLFVSKVEPTSPRNERKFSAATAPSMKTKWLKAFKSLKPAGSGSAQQADRRNGASSTASEPLRPNLDGSHHLQEYTYKKITACDVCSQILRGHTRQGLRCRICKLNAHGDCAPNLPRCQPKQKLLRRQKSTSELENRVDIEEETGADKSVQAKQMDGSVAGGSALPVPVLSERELGRAPPPDIPIVSVSELALQEQQQQQQQQQQQHQQQQRSLASVAQAAAVRAGRGVRPPPVAMPILGVQLQQQELQQQRGGLPVPSQDISSSSGTNASKTITAPSSPSHPGRKLLYATRGMRGGSVDLPDEMEKSQSSASTSPCLSPVRHPQKTHRLLPTNLYVIIYNFKARHADELDLKAGYKVTVIDNSDPDWWKGKVLGRVGYFPSKYCVRLNANEKPLQVTHNLQVSDSERGENLTLLRDQIVIQTGDEVNGMVMIRAAEHGQGYCPIKYLQEV
Protein: Troponin I type 1b (Skeletal, slow) (Zgc:103458) (Q5PR62)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
Sequence:
MPEQEKKSKISASRKLMLKSLMVAKAKEELEQELADKEDEKEKYLSEKAPQLQTSGMSFAELQELCRELHAKIDVVDEERYDIEAKVLHNTREIKDLNIKVLDLRGKFKRPTLRRVRVSADAILRSLLGSKHKVSMDLRANLKSVKKEDTEKEKTVEVSDWRKNVEAMSGMEGRKKMFDAAQ
Protein: Protein DSE1 (Daughter-specific expression protein 1) (P40077)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Involved in cell wall metabolism and required for the separation of the mother and daughter cells.
Subcellular location: Bud neck {ECO:0000269|PubMed:14562095}.
Interaction partners:
- Protein DSE2
- Probable family 17 glucosidase SCW11
- Endochitinase
- Protein EGT2
- Antagonist of mitotic exit network protein 1
- Glucan endo-1,3-beta-D-glucosidase 1
- Probable secreted beta-glucosidase SUN4
- Protein DSE3
- BEM1-interacting protein 2
- Metallothionein expression activator
Sequence:
MQDTKYYEPTNIFRQPAINIKKRSDKKRILQSMMTLSTYKKTWQNNTSKMNSPILRKASDNFNDYYTTKKLKSDYWKLYGVDESELSIPSDMSIVDNILLVSTMNEKDNLKLFEISAEKKLKELQTITVPGKPITCICLLPMVDFPPQIFPSSQINPNHNQLILTGHQDGIVNLIATSTYKGCAKIIKRFNHNKFLKSTVSTSIPILEITPKTAPILKVSPWNKTGFVSLLNDSLFIYDLKSNLDCIKTPIFLQSYPGINSFAVNEFHDPFLLALVGSKFGPNGISLLDLRTNLYIPDILDNSISAGCGKDHLQRKNTSLDCVWISNHHVAQSLNDKIQIWDIQSCDGKPVCELYAKKGYIESLKFNENTGALYSSDDQGFVICWDLQNLQNMKYGELVHGFNSISLDSESELLLTKQVFQCGNIIVSGMSDKNICLKSNDTKANGKGCGFLFLDMANDGSLVTLDNFCELGLHQICQVQFNVDTGKIIDGNGTGKSGISDSSMLSLSNESDHSMTETSDDMFSNSGNWDCSSANTVSEGRLNDDQEDIVFTKRMYSVNDVHLSGSTIDTTVV
Protein: Terminase, large subunit (DNA-packaging protein gp2) [Includes: Endonuclease (EC 3.1.21.-); ATPase (EC 3.6.4.-)] (Q8H9R7)
Organism: Bruynoghevirus PaP3
Interaction partners:
Sequence:
MDTQERLRNLVRELAERQKYFRMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTGRYPEWWTGRKFDKPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVKTERREGKPGCVQAVMVRHVSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGIPMLGSGVVFPILEEKFVCEPFDIPDHFHRIIGIDLGFDHPNAIACVAWDAEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMYHRKDGKIVDRNDDMISATRYALLMASRHARPGAVRNSGYYRSDTARLIPDWFGSIV
Protein: DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.4.13) (Q56X76)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
- Ribosomal RNA small subunit methyltransferase-N
- Vesicle-associated protein 1-3
- Pescadillo homolog
- DExH-box ATP-dependent RNA helicase DExH10
- Putative purine permease 19
- Probable rRNA-processing protein EBP2 homolog
- RNA helicase
- Nuclear protein-like
Sequence:
MVGASRTILSLSLSSSLFTFSKIPHVFPFLRLHKPRFHHAFRPLYSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESLTTDNVRRDAARTHITQEKGRSVKQIREVSKQRNSRDKPSSSSPPARSTGGKTPVRKSSSSSFSKPRKASSPPEKSSKPKRKILKTVGSRSIAARGKTGSDRRPGKKLSVVGFRGKSSSARAS
Protein: DNA-directed RNA polymerase III subunit RPC6 (RNA polymerase III subunit C6) (Q7ZTZ0)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|PIRNR:PIRNR028763}.
Interaction partners:
Sequence:
MTEVKVKKESTDPVDIENRIKELCQQFPHGITDQVIQNDMPHVEAQQRATAINRLLSVGQLDLLRNSSGLLYRLKDTQSASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVNPIIQPTGLVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF
Protein: POU domain protein (Q6MG27)
Organism: Rattus norvegicus (Rat)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
Interaction partners:
- Homeobox protein NANOG
- SRY-box transcription factor 2
- Sal-like protein 4
- WD repeat-containing protein 5
- SRY-box transcription factor 17
- KLF transcription factor 4
- Catenin beta-1
- Steroid hormone receptor ERR2
- Lysine-specific histone demethylase
- Nucleus accumbens-associated protein 1
Sequence:
MAGHLASDFAFSPPPGGGDGSAGLEPGWVDPRTWLSFQGPPSGPGIGPGSEVLGISPCPPAYEFCGGMAYCGPQVGLGLVPQVGVETLQPEGQAGARVESNSEGASSGPCTARPSAVKLEKVEPSPEESQDMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTICRFEALQLSLKNMCKLRPLLEKWVEEADNNENLQEICKSETLVQARKRKRTSIENRVRWNLENMFLQCPKPSLQQITSIAKQLGLERDVVRVWFCNRRQKGKRSSIEYSQREEYEAAGKPFPGGAVSFPLPPGPHFGAPGYGSPHFTTLYSVPFPEGEAFPSVPVTALGSPMHSN
Protein: U3 small nucleolar RNA-associated protein 18 (Q389Y4)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Subcellular location: Nucleus, nucleolus {ECO:0000256|ARBA:ARBA00004604}.
Interaction partners:
- KRR1 small subunit processome component
- Bms1-type G domain-containing protein
- U3 small nuclear ribonucleoprotein
- U3 small nucleolar ribonucleoprotein protein IMP3, putative
- U3 small nucleolar RNA-associated protein 6 N-terminal domain-containing protein
- HEAT repeat-containing protein 1
- AATF leucine zipper-containing domain-containing protein
- BING4 C-terminal domain-containing protein
- Nop14-like protein
- CCAAT-binding factor domain-containing protein
Sequence:
MSSRAWVDEADITIEKNLPEFIKQSQKLPAWARNNAGSGTKGGLGGESSSPFPNLSAQLAGQKRFRDRDLDALLARTEPLLTSKHERRSTTVPPVLSVLPLPSDAARTVHWHRNGQLAIVGGNNHVYLFHAAGRFVEEISKTHVGKRIKQTTLTATGEDLIIVGNGIYTPNLLHLATEKLIPLNFLCTRELAPHRNGRRDNSKYDFHISKVATPEGGAGENIVGMAHGATITVASIASASIMHRIDLSDPVVDMAFTSSAQELTVATRNKLTVYDLRKSSQFLRELHDKGMVGITTFACSNSMVAVGSTSGIVGLYSGSSLATPVKTLKNLTTSIDCVAFGERSNGDSVLAFCSGSQKAGFRLASLPDCRVVPSFPTVSVRHDFVQSMTMAPTVPILSVGEKTRVTNYAL
Protein: Bcl-2-like protein 1 (Bcl2-L-1) (Apoptosis regulator Bcl-X) (Q64373)
Organism: Mus musculus (Mouse)
Function: Potent inhibitor of cell death. Inhibits activation of caspases. Appears to regulate cell death by blocking the voltage-dependent anion channel (VDAC) by binding to it and preventing the release of the caspase activator, CYC1, from the mitochondrial membrane. Also acts as a regulator of G2 checkpoint and progression to cytokinesis during mitosis.
Subcellular location: Mitochondrion membrane {ECO:0000269|PubMed:7607090}; Single-pass membrane protein {ECO:0000269|PubMed:7607090}. Nucleus membrane {ECO:0000250}; Single-pass membrane protein {ECO:0000250}; Cytoplasmic side {ECO:0000250}. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000269|PubMed:7607090}. Note=Localizes to the centrosome when phosphorylated at Ser-49.; SUBCELLULAR LOCATION: [Isoform Bcl-X(L)]: Mitochondrion inner membrane. Mitochondrion outer membrane. Mitochondrion matrix {ECO:0000250}. Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane {ECO:0000250}. Cytoplasm, cytosol {ECO:0000250}. Note=After neuronal stimulation, translocates from cytosol to synaptic vesicle and mitochondrion membrane in a calmodulin-dependent manner. {ECO:0000250}.; SUBCELLULAR LOCATION: [Isoform Bcl-X(delta-TM)]: Cytoplasm.
Interaction partners:
- Bcl-2-binding component 3
- Phorbol-12-myristate-13-acetate-induced protein 1
- Beclin-1
- Apoptosis regulator Bcl-2
- Bcl2-associated agonist of cell death
- Cellular tumor antigen p53
- Bcl-2-like protein 11
- Bcl-2 homologous antagonist/killer
- Activator of apoptosis harakiri
- BH3-interacting domain death agonist
Sequence:
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK