wanglab/gogpt-training-data huggingface dataset:
Protein: Protein patched homolog 1 (F1R8E2)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
- Sonic hedgehog protein
- Tiggy-winkle hedgehog protein
- Protein smoothened
- Indian hedgehog B protein
- Desert hedgehog protein
- Hedgehog protein
- Cell adhesion molecule-related/down-regulated by oncogenes
- GLI family zinc finger 1
- GLI family zinc finger 2a.
- BOC cell adhesion-associated, oncogene-regulated.
Sequence:
MASAVNVSSEQENRDPDRPRVTRRNRGNYRTAAADLEYLQRPSYCDAAFALEQISEGNATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETDVEKLWVEVGGRVNQELKYTRQKIGEEAMFSPQLMIQTPRQEGANILTVEALKQHLDSAIKASRVHVYMYNRQWTLEHLCYKSGELVTETNVVDQILEKLHPCLVITPLDCFWEGAKLHSGTFYLPGKPPLQWTNFDPMGFIAELKMLKYQVDSWEEMLVKADVGQGYMNRPCLNPADPDCPLSAPNKNTTGPFDVAPVLTGGCYGLSKKYMHWQEELIVGGTKKNDSGKLLSAQAFQTMFQLMTPKQMYEHLKGYDEVSHINWNEDKAAAILEAWQRKYSEAVQQSVPVNSSQKVLTFTTTTLEDILKSFSDVSVIRIASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSLLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIFCCFVSPCANRVIQLEPQAAYADSSADSSRYSPPPSYSSHSFAQHTQITMQSTVQLRTEYDPRTQAYYTTAEPHSHISVQPYAPNTNPNPNPNRNNNNNNCTNNSSSAVPGVATDTASCQSPDGASSTRDLLSQFGDSGIRCLDSPYSRWTFASFAEKHYAPFLLQSTTKVVVIFLFLALLGVSLYGTTRVRDGLELTDIVPRETGEYDFIRAQFRYFSFYNMYVVTQRADYAQIQPQLYELHQRFGSVKYILREENGQLPRMWLHYFRDWLLGLQEAFDKDWQAGRITQGNYRNGSDDGVLAYKLLVQTGRREKTITRQRLVSADGIINPNAFYIYLSAWVSNDPVAYAASQANIRPHPPEWLHDRTDSIPASRLNIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICNNFSRQGLPSYPNGYPFLFWEQYVGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVLVLSLMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRNKRAVLALEHMFAPVLDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSPADGQSRLPTPSPEPPPQVVRFTMRPSHTTPGAGSDSSDSEYGSNTTVSGISQELQQYNLQPNRGRSARLEEVRIATAGRQGSRQVELPMFPSCSDDSRQQQIQQHYRSSSHDAAPQPSKRYCSRDPKRDFGSGHPPPPHRPRMDAFETATEPGGHSGPNHRDRSGAHRPRSHNPYNPHPSHPSTGPNYCQPITTVTASASVTVAVHSGVPSQSPAYPSYPSNDSYQTSGDVHNDPHFSDPHVPFDESHDSSKVEGMELQDLEYDTANVCHTRPSS
Protein: Fructoselysine 6-kinase (EC 2.7.1.218) (P45543)
Organism: Escherichia coli (strain K12)
Function: Catalyzes the ATP-dependent phosphorylation of fructoselysine to fructoselysine 6-phosphate. Functions in a fructoselysine degradation pathway that allows E.coli to grow on fructoselysine or psicoselysine. To a much lesser extenst, is also able to phosphorylate psicoselysine.
Interaction partners:
- Fructoselysine 3-epimerase
- Fructoselysine 6-phosphate deglycase
- Probable fructoselysine/psicoselysine transporter FrlA
- Probable fructoselysine utilization operon transcriptional repressor
- Fructose-like permease IIC component 1
Sequence:
MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHLDFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVIDTMGAGDSFIAGFLCGWSAGMTLPQAIAQGTACAAKTIQYHGAW
Protein: Fibroblast growth factor (FGF) (A0A8I6B5D5)
Organism: Rattus norvegicus (Rat)
Interaction partners:
Sequence:
MGSPRSALSCLLLHLLVLCLQAQVRSAAQKRGPGAGDPADTLGQGHEDRSFGQRSRAGKNFTNPAPNYPEEGSKEQRDSVLPKVTERHVREQSLVTDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLPRGHHTTEQSLRFEFLNYPPFTRSLRGSQRTWAPEPR
Protein: ATP synthase subunit beta-3, mitochondrial (EC 7.1.2.2) (Q9C5A9)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Subcellular location: Mitochondrion {ECO:0000305|PubMed:25732537}. Mitochondrion inner membrane {ECO:0000250}. Note=Peripheral membrane protein.
Interaction partners:
- ATP synthase subunit d, mitochondrial
- ATP synthase subunit delta', mitochondrial
- ATP synthase subunit O, mitochondrial
- ATP synthase subunit gamma, mitochondrial
- ATP synthase subunit alpha
- ATP synthase subunit 9
- ATP synthase subunit alpha
- ATP synthase subunit alpha, chloroplastic
- ATP synthase subunit b, chloroplastic
- ATP synthase subunit epsilon, mitochondrial
Sequence:
MASRRILSSLLRSSSSRSTSKSSLIGSRNPRLLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAPSSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKESAA
Protein: Protein kinase C (EC 2.7.11.13) (F1R506)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
- Inhibitor of nuclear factor kappa B kinase subunit beta.
- Inhibitor of nuclear factor kappa-B kinase subunit alpha
- Stress-activated protein kinase JNK
- Stress-activated protein kinase JNK
- Mitogen-activated protein kinase 8
- Stress-activated protein kinase JNK
- Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
- Caspase recruitment domain family, member 11.
- 3-phosphoinositide-dependent protein kinase 1
- small monomeric GTPase
Sequence:
MSPFLRIAFSSFEMDPGLAYHEEVLNPYCAVYMKEAVETEKGQVYKQKRPTMYPPWSSTFDAHVHKGRVMHVVVKDKTAELKTEATVQLDTLASRCKKENGKLEIWVELKPQGRLLMEARYFLERSGEHGETEREKEGVFALHHRRGAIKQAKVHVVKCHEFTATFFPQPTFCSVCKEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKCTGSAVNSKETMIHKERFKIDMPHRFKVYNYMSPTFCEHCGTLLWGLARQGLKCEECGMNVHHKCQKKVANLCGVNQKLMAEALAMIESTQQQARSSRDTETVGREGPVSADQPGVIREPSGRLAISPLTPAPPLPRKEHQGISWDSPADGRRPSLEEPEPLYATPRKEHHKFTIDSFILHKMLGKGSFGKVFLAELKGSGQFFAVKALKKDVVLMDDDVECTMVERRVLSLAWDHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQTCHRFDLPRSTFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENIIGEARTCTFCGTPDYIAPEILLGQKYGTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRTDDPCYPRWLTRDARDILVKLFVREPERRLGVKGNIRQHPFFRETDWSALEERQVEPPFKPTVKSANDCSNFDKEFINEKPRLSVTDRMMINSMDQSMFENFSFINPIMTRLKSP
Protein: Facilitated glucose transporter 1 (Solute carrier family 2 member 1a) (Solute carrier family 2, facilitated glucose transporter member 1a) (Q285P3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
- Solute carrier family 2, facilitated glucose transporter member 5
- Solute carrier family 2 member 1b
Sequence:
MESNKKEVTPQLMMAVGTAVIGSLQFGYNTGVINAPQKIIEGFYNETWHNRYSEYIPPTTLTTLWSVSVAIFSVGGILGSFSVGLFVNRFGRRNSMLIANILAFIAAAFMGFSKLAESWEMLIIGRFIVGLYSGLSTGFVPMYVGEIAPTSLRGALGTLHQLGIVIGILMAQIFGIKEIMGSPTLWPFMLGFTFIPAVLQCALLPFCPESPRYLLINQNEEAKAKSVLKKLRGTDDVGADMQEMRDESRQMMREKTVTIPELFRSSLYRQPIFIAIMLQLSQQFSGINAVFYYSTGIFEKAGVSEPVYATIGAGAVNTAFTVVSLFIVERVGRRSLHLVGLMGMAVSSVLMTIAMALLTKVEWMSYVSIVAIFSFVAFFEIGPGPIPWFIVAELFSQGPRPSAFAVAGFSNWFANFLVGMCFQYVEELTGPYVFIIFTVLLLIFFVFTYFKVPETKGRSFEEITASFRTGADKYNRDDLNTLGADSQL
Protein: Bacteriochlorophyllide d C-20 methyltransferase (EC 2.1.1.333) (Bacteriochlorophyllide d MTase) (Q8KGE0)
Organism: Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
Function: Involved in the biosynthesis of the major light-harvesting pigment bacteriochlorophyll c (BChlc), which confers a significant competitive advantage to green sulfur bacteria living at limiting red and near-infrared light intensities. Catalyzes the methylation at the C-20 position of the cyclic tetrapyrrole chlorin of bacteriochlorophyll d (BChld) to produce bacteriochlorophyll c (BChlc) using S-adenosylmethionine (SAM) as a methyl source.
Interaction partners:
- Bacteriochlorophyllide d C-8
- Bacteriochlorophyll c3
- Bacteriochlorophyll c synthase
- Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase, 66 kDa subunit
- 2-vinyl bacteriochlorophyllide hydratase
- Large ribosomal subunit protein bL25
Sequence:
MSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP
Protein: Vacuolar protein sorting-associated protein 29 (Carboxypeptidase Y-deficient protein 11) (Vesicle protein sorting 29) (P38759)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Plays a role in vesicular protein sorting. Required for the endosome-to-Golgi retrieval of the vacuolar protein sorting receptor VPS10. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. The VPS29-VPS26-VPS35 subcomplex may be involved in cargo selection.
Interaction partners:
- Vacuolar protein sorting-associated protein 5
- Vacuolar protein sorting-associated protein 35
- Carboxypeptidase Y-deficient protein 8
- Vacuolar protein sorting-associated protein 17
- Sorting nexin-3
- GTPase-activating protein GYP6
- Vacuolar protein sorting/targeting protein VPS10
- Uncharacterized protein YKR078W
- Sorting nexin-4
- Vacuolar protein sorting-associated protein 9
Sequence:
MLLLALSDAHIPDRATDLPVKFKKLLSVPDKISQVALLGNSTKSYDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTDWPIVFDVEDSDEAVTSEVDKPTKENQSEDDDAKGGSTGKEQPGSYTPKEGTAGERENENESNVKPENQFKEDEVDMSDSDINGSNSPSFCLLDIQGNTCTLYIYLYVNGEVKVDKVVYEKE
Protein: Olfactory receptor 2G6 (Q5TZ20)
Organism: Homo sapiens (Human)
Function: Odorant receptor.
Subcellular location: Cell membrane; Multi-pass membrane protein.
Interaction partners:
Sequence:
MEETNNSSEKGFLLLGFSDQPQLERFLFAIILYFYVLSLLGNTALILVCCLDSRLHTPMYFFLSNLSCVDICFTTSVAPQLLVTMNKKDKTMSYGGCVAQLYVAMGLGSSECILLAVMAYDRYAAVCRPLRYIAIMHPRFCASLAGGAWLSGLITSLIQCSLTVQLPLCGHRTLDHIFCEVPVLIKLACVDTTFNEAELFVASVVFLIVPVLLILVSYGFITQAVLRIKSAAGRQKAFGTCSSHLVVVIIFYGTIIFMYLQPANRRSKNQGKFVSLFYTIVTPLLNPIIYTLRNKDVKGALRTLILGSAAGQSHKD
Protein: Klaroid, isoform B (A1Z6Q1)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004370}.
Interaction partners:
Sequence:
MTPDAKRKQNSITATVTSILTKRSGGATSTPRNRSQLETTQNTLNSAQEKLNQSNGNLSSGNVSDYLAYIEYRDAGEYWNKTPKTDYTYSELSPHRRQLAPGIVAMPNMSRKSLENHNDRVNYMVQQNPAQEEFIRRRYQSKYTQQVNYDSADELDATFGQQKQSWWLIRLIQLVVSSITTVWSRVTNLSATETTAYQNYHAKRQQSQQVGLWWKIVQTIGGGLASLLRYLYVFIGSVLSLDTWLLRSSDAENKSKKRFLIFLLILLPLLLLSGWLLLQEDQRSAYVQRAEALLPLPLSIFGSLRSRFSNAGATLKSWMEVPTVRSPQREAEAIKVNMASIEQNIQKALTAEEYENILNHVNSYVQQLVELKMQQHSKELAPQQIELFVKLMKENLKQIMYKTELSEKDLSDLAIKLKLELQSSGGWQDGAKLSQANLEEITKLIKAEVHLHESHYTIQLDRIDFASLLERILAAPALADFVDARISLRVGELEPKESSGSSDAEVQIERLNREIAFIKLALSDKQAENADLHQSISNLKLGQEDLLERIQQHELSQDRRFHGLLAEIENKLSALNDSQFALLNKQIKLSLVEILGFKQSTAGGSAGQLDDFDLQTWVRSMFVAKDYLEQQLLELNKRTNNNIRDEIERSSILLMSDISQRLKREILLVVEAKHNESTKALKGHIREEEVRQIVKTVLAIYDADKTGLVDFALESAGGQILSTRCTESYQTKSAQISVFGIPLWYPTNTPRVAISPNVQPGECWAFQGFPGFLVLKLNSLVYVTGFTLEHIPKSLSPTGRIESAPRNFTVWGLEQEKDQEPVLFGDYQFEDNGASLQYFAVQNLDIKRPYEIVELRIETNHGHPTYTCLYRFRVHGKPPAT
Protein: Cytochrome b-c1 complex subunit 9, mitochondrial (Complex III subunit 9) (A0A1D8PLP3)
Organism: Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
Subcellular location: Membrane {ECO:0000269|PubMed:19824013}; Single-pass membrane protein {ECO:0000255}. Mitochondrion inner membrane {ECO:0000250|UniProtKB:P22289}; Single-pass membrane protein {ECO:0000250|UniProtKB:P22289}.
Interaction partners:
- Cytochrome b-c1 complex reductase subunit, mitochondrial
- Cytochrome b-c1 complex subunit 6, mitochondrial
- Cytochrome b-c1 complex subunit 10, mitochondrial
- Cytochrome b-c1 complex subunit Rieske, mitochondrial
- Cytochrome c oxidase subunit
- Cytochrome b-c1 complex catalytic subunit, mitochondrial
- Cytochrome c oxidase subunit 4, mitochondrial
- Cytochrome b-c1 complex subunit 2, mitochondrial
- Cytochrome c oxidase subunit 6, mitochondrial
- Cytochrome b-c1 complex subunit 7, mitochondrial
Sequence:
MLTVLGRLLERNSIYVATIFGGAFAFQGFFDVAVNKWWEEHNKAKLWKNVKGKFLEGEGEEEDDE
Protein: Raptor, isoform B (Raptor, isoform C) (Q9W437)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
- GH16429p
- LOBE
- GTP-binding protein Rheb homolog
- Protein LST8 homolog
- Eukaryotic translation initiation factor 4E-binding protein
- Ribosomal protein S6 kinase
- GH04846p
- Serine/threonine-protein kinase mTor
- FI03615p
- RAC serine/threonine-protein kinase
Sequence:
MTSAVRAKSAAAAVGVAVDESSGSSNGSVADQEVASSKEAVLSVLIRKRYEKYVFAPWDDPIILIMEQLEHIEHCRSAALGNQVAIGRDPSQDDSLNDLGKVISNMRQDQSLVPIVKHIEQISDIQASNGQELASLGSLRELIRTIRKEWPRDDSIKLRLKEIQILGMPPARSLCFGERIRDDRCPLSLQTKRHKERIQAMMYERQPWRIRERMKTASVALVLCLNIGVDPPDVVKIQPCSRLECWIDPSSVSPPKAMELIGSNLQMQYERWQPRARYKKCNDPTVDDVKKLCTSLRRNAKGERILFHYNGHGVPKPTANGEIWVFNKTFTQYIPLSIFELITWMSAPSIYVYDCSNAGIIINSFQPYAKQHEEELGKALAAAQQRGGVQQLVGGSGGAANVAANQVQLTNQMVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKLGMVPRIQSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNTLPRELFQRLFRQDLLVASLFRNFLLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEILDHNAPYRQLPFFEHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLDLGPWAVNLALGVGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKEYKYFLSVLQDTSVSKEHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQLNDGSWLLRQWLAICLGMLWQNFEKARWSGARDLAHEKLYVLLRDSIPEVRAAAVFALGTFISSVTDRSEEQANNIDRIIAITMLETVGEDMSPLVRMELAAALQWMVVLFESQFVAVYLTEHMRGHVSAASFVMCPDPRDLTSSTHSLERHVTIRRGASSSSISNMGGASISSGTGSSSNPLGRSKSGSGSSGGRGAAGAAGGTNSIPFQSIFTKLWLGICNLAQDPFPRVAAIAQEIVEHVRDTALCPIMAAKEATMANASEKCSSLSVSLPPSPNTRVNYLGGGGAPGGAGATAESPPVGAAASGASHWAQKLRLSGSGACMGAGDPQTILQRKLRTSSINDETDSGPGYSRGVAGAGTGLGLPSGPRESTHSARSSGSESNHYLEPGHSLTPIVLTEFIPWAISYFTRPGKERYSSAEGSAEEGRQRFPVDRNSAELRRRRLRFLRNDFVRRHAGRKHQELIDPYGFDVCVWNRKTQFTPSIVKLLPYEPQIAVAYREKVLVYDFQYNSVRTYGAESLGGNFTGYSSGYGSGSGSSSSLNGSTPRKSGAHTSGGGGGGFSAAPFARVSSIEFINAQDMALNLVAHEDGVVRVWQSSPPASSATSEDTPSKARLVTAWTALGQVNQHNHRQRSVASGGSIGKGADASGLSSAAIGSGGIVTAWQQCSQHLVIGGGGCRFIRIWDVERELKLADIPLGRSETCARVLSPYLPNMRSDVILAGCDDGSVRLFDKRCAPQDAGISVYRRHSAPILHASLRANGLVLVSGCTEGRISVADMRGSQSSINPFDVVYEWDAGGDVTAITSHQLEDTVACGNASKIVIYSLDGRQQKVLRTNEGFIGPKIGHPTYLYFHPYKAQLAVGFVDNTVAIYSPTPVL
Protein: Corrinoid adenosyltransferase PduO (EC 2.5.1.-) (ATP:co(I)rrinoid adenosyltransferase PduO) (ACA) (Propanediol utilization protein PduO) (Q8ZNR5)
Organism: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Function: Converts cob(I)alamin to adenosylcobalamin (adenosylcob(III)alamin), the cofactor for propanediol dehydratase. Found in the bacterial microcompartment (BMC) dedicated to 1,2-propanediol (1,2-PD) degradation. For adenosylcobalamin synthesis dATP can replace ATP, but no other nucleotides will substitute. PduS and PduO allow regeneration of the adenosylcobalamin cofactor within the BMC (Probable).
Subcellular location: Bacterial microcompartment {ECO:0000305|PubMed:12923081}.
Interaction partners:
- Propanediol dehydratase medium subunit
- Phosphate propanoyltransferase
- Propanal dehydrogenase
- Propanediol dehydratase large subunit
- Cobalamin reductase PduS
- Propanediol dehydratase small subunit
- Bacterial microcompartment shell protein PduB
- Propanediol dehydratase-reactivating factor large subunit
- 1-propanol dehydrogenase PduQ
- Propanediol utilization protein PduV
Sequence:
MAIYTRTGDAGTTSLFTGQRVSKTHPRVEAYGTLDELNAALSLCACAAADENHRTLLEAIQQQLFWFSAELASDSEQPSPKQRYISSEEISALEAAIDRAMARVEPLHSFILPGRCEAASRLHFARTLARRAERRLVELATEVNVRQVLMRYINRLSDCLYALARAEDSDAHQANIIREVSKRYLAACQPPHSKETTPVALSFHDLHQLTRAAVERAQQLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSDVVQPGAALYGLESHLQGKVVTFGGGYALWRDGILIGGLGISGGSVEQDMDIAQTAIAAINVGTHQ
Protein: Leucine zipper transcription factor-like protein 1 (Q7ZV21)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
Interaction partners:
Sequence:
MADFGFNEHHQHEVINYMRFARSKRALRLKTVDSCFQDLKESRLIEETYTVDEVTDILNGLQVLVRGEVEMELINTAHTNVLLLRQLFSQAEKFYLRLQTDISELENRELLEQVAEFEKTDFKPNIKANQETTKPKLAPLNEGGVSELLQREISRLQEDNDKLKARLRTLESRAMCALEDKSKAETALKDLQKSQGVHQSVMCAQEIANLEDTVAAMQADFEKTLNTNITSQKDLQDSLVSTKHDLLRVQGQLSLAEKELEKKFQQTAAYRNLKEILNKKNEQIKDLRKRLLRYESAE
Protein: Protein RETICULATA-RELATED 1, chloroplastic (Q9FGP9)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: May play a role in leaf development.
Subcellular location: Plastid, chloroplast membrane {ECO:0000250|UniProtKB:Q9C9Z2}; Multi-pass membrane protein {ECO:0000255}.
Interaction partners:
- Protein RER1C
- Protein RER1B
- Protein RER1A
- Serine/threonine-protein kinase ATG1c
- Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3
- Syntaxin-31
- Protein transport protein SEC13 homolog B
- Golgi SNAP receptor complex member 1-1
- Coatomer subunit gamma
Sequence:
MSISLKISHISSFSNDGFNSVKQCRVSQRFEIRSVCFRRSPGVESRRIHLNSDLSSRNLRNRCVGSDVVTGEISGRSIPDWAYSGVKDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ
Protein: ATP synthase F(0) complex subunit f, mitochondrial (ATP synthase membrane subunit f) (D3ZAF6)
Organism: Rattus norvegicus (Rat)
Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. Minor subunit located with subunit a in the membrane.
Subcellular location: Mitochondrion {ECO:0000250}. Mitochondrion inner membrane {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.
Interaction partners:
- ATP synthase peripheral stalk subunit F6, mitochondrial
- ATP synthase peripheral stalk subunit d, mitochondrial
- ATP synthase F
- ATP synthase F
- ATP synthase peripheral stalk subunit b, mitochondrial
- ATP synthase F
- ATP synthase peripheral stalk subunit OSCP, mitochondrial
- ATP synthase F
- ATP synthase F
- ATP synthase F
Sequence:
MASIVPLKEKKLMEVKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYVVFSYCISYKELKHERRRKYH
Protein: Malate dehydrogenase 3, cytoplasmic (EC 1.1.1.37) (Cytosolic NAD-dependent malate dehydrogenase 3) (cNAD-MDH3) (Cytosolic malate dehydrogenase 3) (Cytosolic MDH3) (Q9FJU0)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Catalyzes a reversible NAD-dependent dehydrogenase reaction involved in central metabolism and redox homeostasis between organelle compartments.
Subcellular location: Cytoplasm {ECO:0000250}.
Interaction partners:
- Malate synthase
- NAD-dependent malic enzyme 2, mitochondrial
- Citrate synthase 2, peroxisomal
- Citrate synthase 3, peroxisomal
- Fumarate hydratase 2
- Citrate synthase 1, peroxisomal
- NAD-dependent malic enzyme 1, mitochondrial
- Citrate synthase 5, mitochondrial
- Citrate synthase 4, mitochondrial
- Fumarate hydratase 1, mitochondrial
Sequence:
MCNLLNIEKDPIRVLITGAAGNIGYAIAPMIARGIMLGPDQPMILHLLDIEPASSSLEAVKMELQDSAFPLLKGVIATTNVVEACKDVNIVIMIGGFPRIAGMERKDVMSKNVVIYKAQASALERYASDDCKVLVVANPANTNALILKEFAPSIPEENITCLTRLDHNRALAQLADKLSVPVSSVKNVIVWGNHSSTQYPDTNHATVSTKTGDRPLKELVTDHNWLKNEFIVEVQQRGAAVLRARKQSSAFSAAGAACDHIRDWFLGTPKGTWVSMGVCSDGSYGIPPGLVYSFPVICEKGSWKIVQGLSIDEFSREKMDDSARELAEEKDLAYSCLNV
Protein: Endosomal protein P24B (Q9P7I9)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Constituent of COPII-coated endoplasmic reticulum-derived transport vesicles. Required for efficient transport of a subset of secretory proteins to the Golgi (By similarity).
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:16823372}; Single-pass type I membrane protein {ECO:0000269|PubMed:16823372}. Golgi apparatus membrane {ECO:0000250}; Single-pass type I membrane protein {ECO:0000250}. Note=Recycles between endoplasmic reticulum and Golgi. {ECO:0000250}.
Interaction partners:
- Endoplasmic reticulum vesicle protein 25
- Uncharacterized membrane protein C16E9.09c
- Uncharacterized membrane protein C17A5.08
- Small ribosomal subunit protein mS45
- Surfeit locus protein 4 homolog
- Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- Superoxide dismutase, mitochondrial
Sequence:
MAFFNVFKAVLCAYFISVVFGHGITLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKYMYCFYNDALDGESKEVLFNVHGVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVKRVV
Protein: Probable L-type lectin-domain containing receptor kinase S.7 (LecRK-S.7) (EC 2.7.11.1) (Q9FHG4)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.
Subcellular location: Cell membrane {ECO:0000250|UniProtKB:Q9LSR8}; Single-pass type I membrane protein {ECO:0000255}.
Interaction partners:
- Defensin-like protein 5
- Probable disease resistance RPP8-like protein 2
- MACPF domain-containing protein NSL1
- Protein LAZ1
- At3g52790
- Jacalin-related lectin 19
Sequence:
MSLSRKLLVIFFTWITALSMSKPIFVSSDNMNFTFKSFTIRNLTFLGDSHLRNGVVGLTRELGVPDTSSGTVIYNNPIRFYDPDSNTTASFSTHFSFTVQNLNPDPTSAGDGLAFFLSHDNDTLGSPGGYLGLVNSSQPMKNRFVAIEFDTKLDPHFNDPNGNHIGLDVDSLNSISTSDPLLSSQIDLKSGKSITSWIDYKNDLRLLNVFLSYTDPVTTTKKPEKPLLSVNIDLSPFLNGEMYVGFSGSTEGSTEIHLIENWSFKTSGFLPVRSKSNHLHNVSDSSVVNDDPVVIPSKKRRHRHNLAIGLGISCPVLICLALFVFGYFTLKKWKSVKAEKELKTELITGLREFSYKELYTATKGFHSSRVIGRGAFGNVYRAMFVSSGTISAVKRSRHNSTEGKTEFLAELSIIACLRHKNLVQLQGWCNEKGELLLVYEFMPNGSLDKILYQESQTGAVALDWSHRLNIAIGLASALSYLHHECEQQVVHRDIKTSNIMLDINFNARLGDFGLARLTEHDKSPVSTLTAGTMGYLAPEYLQYGTATEKTDAFSYGVVILEVACGRRPIDKEPESQKTVNLVDWVWRLHSEGRVLEAVDERLKGEFDEEMMKKLLLVGLKCAHPDSNERPSMRRVLQILNNEIEPSPVPKMKPTLSFSCGLSLDDIVSEDEEGDSIVYVVS
Protein: RNA helicase (EC 3.6.4.13) (F4JWF6)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
Sequence:
MGDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDFLENETVSVRLFSFGVENSEWRLCSFGFIVLVWVSMFRAILMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS
Protein: Probable receptor-like protein kinase At2g47060 (EC 2.7.11.1) (O80719)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Serine/threonine-protein kinase OXI1
- Polyketide cyclase/dehydrase and lipid transport superfamily protein
- Mitogen-activated protein kinase 3
Sequence:
MSCFGCCGEDDDMHKTADYGGRHNQAKHFPPGNDARHHQASETAQKGPPVVKLQPIEVPIIPFSELKEATDDFGSNSLIGEGSYGRVYYGVLNNDLPSAIKKLDSNKQPDNEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPGPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQPLLNARAVAPGEGVH