wanglab/gogpt-training-data huggingface dataset:
Protein: At4g27240 (Zinc finger (C2H2 type) family protein) (O81827)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Nuclear pore complex protein NUP205
- Nuclear pore complex protein NUP88
- Nuclear pore complex protein NUP155
- Protein SEH1
- Nuclear pore complex protein NUP107
- Nuclear pore complex protein NUP54
- 1-acyl-sn-glycerol-3-phosphate acyltransferase
- Nuclear pore complex protein NUP160
- Nuclear pore complex protein NUP93B
- Nuclear pore complex protein NUP93A
Sequence:
MEASSTRSEKKKKKKTIQRENTDTQKKKKLPSVWFSLKKSLPCKSDVSDVHIPRSKKELAPISTKRTTTSSGGGVGGRSGCSRSIANLKDVIHGNQRHLEKPLCSSPRSIGSSEFLNPITHDVIFSNSTCELKITAAGATEFVGNLRPGTPVNYSSSRRSQTSRKASSLDREGLGFHQSRRENDREAAINGDNSSVSCHKCGEKFSKLEAAEAHHLTKHAVTELMEGDSSRRIVEIICRTSWLKTENQGGRIDRILKVHNMQKTLARFEEYRDTVKIRASKLQKKHPRCIADGNELLRFHGTTVACALGINGSTSLCSSEKCCVCRIIRNGFSAKREMNNGIGVFTASTSERAFESIVIGDGGGGDRKALIVCRVIAGRVHRPVENVEEMGGLLSGFDSLAGKVGLYTNVEELYLLNSRALLPCFVLICKP
Protein: Inositol-3-phosphate synthase (MIP synthase) (EC 5.5.1.4) (Myo-inositol 1-phosphate synthase) (IPS) (MI-1-P synthase) (P11986)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Key enzyme in myo-inositol biosynthesis pathway that catalyzes the conversion of glucose 6-phosphate to 1-myo-inositol 1-phosphate in a NAD-dependent manner. Rate-limiting enzyme in the synthesis of all inositol-containing compounds (By similarity).
Subcellular location: Cytoplasm {ECO:0000269|PubMed:14562095}.
Interaction partners:
- Inositol monophosphatase 1
- Inositol monophosphatase 2
- Protein INO2
- Transcriptional repressor OPI1
- Vesicle-associated membrane protein-associated protein SCS2
- CDP-diacylglycerol--inositol 3-phosphatidyltransferase
- Phosphatidylethanolamine N-methyltransferase
- Cholinephosphotransferase 1
- Phosphatidyl-N-methylethanolamine N-methyltransferase
- Protein INO4
Sequence:
MTEDNIAPITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEERLL
Protein: DH domain-containing protein (H2KYI7)
Organism: Caenorhabditis elegans
Interaction partners:
- Pleckstrin homology domain-containing family G member 7
- Rho-GAP domain-containing protein
- Rho guanine nucleotide exchange factor osg-1
- Rho-GAP domain-containing protein
- Putative protein tag-52
- SH3 domain-containing GRB2-like protein
- Cell division control protein 42 homolog
Sequence:
MQAAPSCYGSMVASTSEEVTTSTLSRGPMTMSVSKSNSQFIEAPAFFYDMDTDLKDLKTALKDVDLLNDSGYRSVMERSTHPFATSLVFHEDNGFDSEDDATDEHWDGYLTVGGDRIKIRDMSDILATRYAFISGARTTEGLTIVTFPDSRSTLPFEDYSLLVKYLLQVPPLEDSHKGFVIIIDRRSDKWSSVRTLLLQISSFFPGKICVTFVIKPEGVLQRALEVGYRGAADTCSFQVIQLESSAELRKYIHHEFLTMDVGGLIKYNHLEWVQHRMDIERMKASATAIAASLTEFGKTLRETELPNDADSTARILELQTAEKMAIKEEFKIAVRKGFTLLKSVRQLDKKPTPEQLSPTRLHNVTAIERMLVQLEETERSFDSFWTKHERRLRYCLELRQFEDSFRKLQAAFARHMLYLEEHREVGNCTEKALHLAEQHRQYAEGAMEEVEASRNLKKAGEDLINSNEAELSGSLEPKCEELERMAAALTSALERRGDCLKRSATMHEQIAKANSWCTRGADLLTNGMTDFTNPNPSSSLTTLDAFIEEGTNLNIEFLKDTTSPMNQLLLLTTIETSTLLNLIEERIGDIRRMSLAKRDQLTKLHLQKPPPVQVVTPEKKSKKNSSKNELDSKDVPSCSGESTPAGTLSPRRETREVTNAFDEMIATEISYVADLKDIIIHYLEPFEATENQNSLPDTLRGKPDCLFGNVRELYKFHHRTVLEDLVAARSTAEMCRVLMQHRNQIYVTYRTYCQIHGSNQKVRDSVKNHPFFKECQRNANHNMDMSSYLLKPIQRIMKYQLLLGNIMDDCPADVRDEVAMTRDSMVELLNQIDASMQQLHISGYNGDLKSLGLLRLQTECDVFTYNRKKKAKLSRAQKRFIFFFDGAVMFCKKRVSNPGTTLNSEPEYFEHKFCIPIISLGYDTSSRTGASRFEVWDDAKTDAYVIETIDQTARTKWIQRLGKSETAQDACLENRQRPKSWASTVSNESSCSSSTRESDSTDSTMDTNGNTQTTQVDVPYSPTLDSSIDLSFQMDTTTPLRTSEINNEVELVDSC
Protein: SUN domain-containing protein 2 (Protein unc-84 homolog B) (Rab5-interacting protein) (Rab5IP) (Sad1/unc-84 protein-like 2) (Q9UH99)
Organism: Homo sapiens (Human)
Function: As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Specifically, SYNE2 and SUN2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. Required for interkinetic nuclear migration (INM) and essential for nucleokinesis and centrosome-nucleus coupling during radial neuronal migration in the cerebral cortex and during glial migration. Required for nuclear migration in retinal photoreceptor progenitors implicating association with cytoplasmic dynein-dynactin and kinesin motor complexes, and probably B-type lamins; SUN1 and SUN2 seem to act redundantly. The SUN1/2:KASH5 LINC complex couples telomeres to microtubules during meiosis; SUN1 and SUN2 seem to act at least partial redundantly. Anchors chromosome movement in the prophase of meiosis and is involved in selective gene expression of coding and non-coding RNAs needed for gametogenesis. Required for telomere attachment to nuclear envelope and gametogenesis. May also function on endocytic vesicles as a receptor for RAB5-GDP and participate in the activation of RAB5.
Subcellular location: Nucleus inner membrane {ECO:0000269|PubMed:15082709}; Single-pass type II membrane protein {ECO:0000269|PubMed:15082709}. Nucleus envelope {ECO:0000269|PubMed:15082709, ECO:0000269|PubMed:17132086, ECO:0000269|PubMed:17724119}. Endosome membrane {ECO:0000269|PubMed:10818110}; Single-pass type II membrane protein {ECO:0000305}.
Interaction partners:
- Nesprin-2
- Nesprin-1
- Prelamin-A/C
- Nesprin-3
- Protein KASH5
- SUN domain-containing protein 1
- Emerin
- Nesprin-4
- Lamin-B1
- Transmembrane protein 43
Sequence:
MSRRSQRLTRYSQGDDDGSSSSGGSSVAGSQSTLFKDSPLRTLKRKSSNMKRLSPAPQLGPSSDAHTSYYSESLVHESWFPPRSSLEELHGDANWGEDLRVRRRRGTGGSESSRASGLVGRKATEDFLGSSSGYSSEDDYVGYSDVDQQSSSSRLRSAVSRAGSLLWMVATSPGRLFRLLYWWAGTTWYRLTTAASLLDVFVLTRRFSSLKTFLWFLLPLLLLTCLTYGAWYFYPYGLQTFHPALVSWWAAKDSRRPDEGWEARDSSPHFQAEQRVMSRVHSLERRLEALAAEFSSNWQKEAMRLERLELRQGAPGQGGGGGLSHEDTLALLEGLVSRREAALKEDFRRETAARIQEELSALRAEHQQDSEDLFKKIVRASQESEARIQQLKSEWQSMTQESFQESSVKELRRLEDQLAGLQQELAALALKQSSVAEEVGLLPQQIQAVRDDVESQFPAWISQFLARGGGGRVGLLQREEMQAQLRELESKILTHVAEMQGKSAREAAASLSLTLQKEGVIGVTEEQVHHIVKQALQRYSEDRIGLADYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPAH
Protein: Hormone receptor 51 (RT06950p1) (A1ZA01)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|RuleBase:RU004334}.
Interaction partners:
- Ecdysone-induced protein 75B, isoform B
Sequence:
MNKEENSSETRPSSQELHSPQRHCYTPPPAPMHGQAPPPTSTGVAPPTQPPPPHPAAPNVPNGRLLSWNHSAAAAAAAAAAQAAANSMNHSSAAEGSSMTRIKGQNLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQNERQPRNTATIRPETLREMEHGRALREAAVAVGVFGPPVLLSPPCYGSGLLPPPSLGSLPTGRLLHHNHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVSHSTNSSSNHSIDPSSPAPENAKEINIAGGSVSSVSSSSPTMENDNDDDSIDVTNDNEEPHAVSRSDSSFIMPQFMSPNLYTHQHETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYFQRTIGNTPMEKVLCDMYKN
Protein: Probable autotransporter YcgV (P76017)
Organism: Escherichia coli (strain K12)
Interaction partners:
- Uncharacterized protein YihM
- Bacteriophage adsorption protein A
Sequence:
MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLLIAADTGSQYGTNITINDGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVNDASGYAKGIIIQGKNSSLTANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDGIIIGHSSTLTATQFTIENSNGIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNNANGAARFTATDLTIDVQGYSAMGINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSANALTVDVTGAAANGVEVRGGTTTIGADSHISSAQGGGLVTSGSDAIINFTGTAAQRNSIFSGGSYGASAQTATAVVNMQNTDITVDRNGSLALGLWALSGGRITGDSLAITGAAGARGIYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDDGYAASRINASGRMLINGSVLSKGGLINLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLDTLALSHSTVDFASHGSTAGTFATLNVENLSGNSTFIMRADVVGEGNGVNNKGDLLNISGSSAGNHVLAIRNQGSEATTGNEVLTVVKTTDGAASFSASSQVELGGYLYDVRKNGTNWELYASGTVPEPTPNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAGGNYLNVGYLLNYVENRTLMQRMGDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSGIQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVIKASRQKNSFHVLDSQNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQNEMTMKASNGLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLLNNSREKYSFKGNGWNNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF
Protein: GRIP domain-containing protein RUD3 (Golgin-related protein 1) (Relieves USO1-1 transport defect protein 3) (Q12234)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Involved in the structural organization of the cis-Golgi and in vesicle targeting/fusion stages of ER to Golgi transport.
Subcellular location: Golgi apparatus lumen {ECO:0000269|PubMed:12646213, ECO:0000269|PubMed:14562095, ECO:0000269|PubMed:15504911}. Note=The Golgi localization needs the presence of ARF1 and ERV14.
Interaction partners:
- Protein CASP
- Intracellular protein transport protein USO1
- Protein SGM1
- DNA-directed RNA polymerases I, II, and III subunit RPABC2
- Golgin IMH1
- GRASP65 homolog protein 1
- Conserved oligomeric Golgi complex subunit 3
- Conserved oligomeric Golgi complex subunit 2
- ADP-ribosylation factor 1
- Nucleoside diphosphate kinase
Sequence:
MGKNKKKTGKKAKSHPHVEDVDETVNKPEEIINSVNVTVPPKMSTDPEADGIVASPDDEGKDLSEGVDKQKVNDGLTVDTINPLEDKKAGDEMKELREEIERLKLELSHKKDQETPNEDFKNELANVIKERDEFKTQYDTLLSKISSMKSIFNKMKEAQKQLEEVQEQLTEYESQNLKLKKKLEATKTENSELQSTIVTLNTELENLEKEQESTEEVFLEYESRIEALEDEKHDIIEKHSKELNTYRKEKDQLNLQVQELMIILENNKQDISDLRTERDELRQALESHEKEKAVLKNSLNDLELKIEEVDNKREEEARERDQEVKSLRSQLDTEIETHNNDTEALESMKKQLEAMKEDASMKEKYEEESKQHILQIGKLRHEAIILNEHLTKALAMLKKSSDSESVDKELISNLLISFVSIPRADPRKFEVLELLSNFLNWDEDKKQQAGLISNNESKNSSAVSRTESFVSLWTNYLEKESEKD
Protein: Photosystem II reaction center protein L (PSII-L) (Q2LIK3)
Organism: Oryza latifolia
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004167}; Single-pass membrane protein {ECO:0000256|ARBA:ARBA00004167}. Plastid, chloroplast thylakoid membrane {ECO:0000256|HAMAP-Rule:MF_01317}; Single-pass membrane protein {ECO:0000256|HAMAP-Rule:MF_01317}.
Interaction partners:
Sequence:
MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Protein: VAMP (Vesicle-associated membrane protein)-associated protein B and C (cDNA FLJ13179 fis, clone NT2RP3003918, highly similar to Vesicle-associated membrane protein-associated protein B/C) (Q53XM7)
Organism: Homo sapiens (Human)
Subcellular location: Endoplasmic reticulum membrane {ECO:0000256|ARBA:ARBA00004163}; Single-pass type IV membrane protein {ECO:0000256|ARBA:ARBA00004163}.
Interaction partners:
Sequence:
MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGKIAL
Protein: Miles to go, isoform E (B7YZW3)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MAAAVLEINENQLELVCDECDYYGATDTIFIDNSTQTDGYDDDESELKPLKPRLSQIVEEEAEMEGTVKEEMDTQVETNGIQSDSNGVSDVKTAINGNESIVAEEISEEEPPVEASVPHVVQELVDSDDEVEIDDVTRLAGLTLGMGYARIIDYDNLRIIEHVIESDDEDDNNVAAAGTAATSAELQQACHDLVTFIGESYQVIERSGHSREPTATLSVVDNNNNNRSSEVSTNGRGAITDRSKSTRKVHNGLQVNQNASTSATATSSSNSKSNSSNNTAATSNSSALIKAYKSNLTPLAPPFQPAALKAKQLQQSSLPSGNMSSVTTTTTTALGYTAYEQTTVYYQQQVQQQQQQHPQQQQQLSPKQQQQQQQQPQQQQPICAQHGGLPHIHGAQLLPVQLIALPPNGVTAAAATAAVAAAAGATVAAAGTPAAAAAGGAAATSLTGAAWPLVEAPIYIDINGEYRSYCPAHGPPAVAVPNGAIGHHPHIHAHPPHTHSHAHPTHSHHAQQQQQQQQQQQQQLHHHHQQHGQHQQHLTPSPVTNVNGNIAQAAAAAASAPRLLLQLDAATVQQQQQQQHQQQQQHQQQQQQQIVAAGKRSKVYRGPAVQMVSQNRPPPPMPVPVQVPQYVNENGTLTHVMLSPQQYQQLHPGQGHLHPAPFISANGTSHFYTPVAGYPGPGPAGNGPPHYHLPPPPPPQQQQQQPPQQPQQQAPQGPPPPQQQQQQQQQVAPPAVQGAPSTGSVGAAQGAPATATATHTHAHSHSHSHAHSHTHPQPHAHSPHSPSPPNYRDERSQRQHNKLLRKLEKQRESNPPHSPSPRRANELNGHNNNNIPPGVPLPGHLNNHHHAVNHQGRRLPQQHQGQAHQVAQQQQSQARNGNPQHPQRAGSSVGGASSVGTSEDGEDNSSLAGDDEEEYHRENSIIEQISAIEKPEVIDVTSRAAKIIWESPAIANTVTVDMRQLRYQVLLCDSGKQCKYKSLYQGEAYECIVQDLQPGQDYLVRLQVHYQKLTGTVSDPTEFRTPPCEPDQPPPPKLVSRTKNSINLRWAAPAANGASIQHYLLEYDEGRMPGQPQKFVELAKIKAKHYVIGKLQPTTVYSFRLAAVNEAGQSPYSPVASYSTSGNPPPVPKPPQLLASSSSSLKLGWERRAQDGDFLLQLQDAETGHGFLNTYKGTELQTECLQLRRASSYQFRLRSENEAGFSPWSPEVSYRTLAERPGRPGKPHAKGKIHGTQFKARWDAPSDSGGAEILCYHLELSAAGPAFERIYSGAETEAMCERLQPGTTYALRACCEGPAGQSPYSDIGHVTTEAVPPSAPPPPHCSDPPSPYAALLKLRPPEYNGGAPILEFEAQMRRLEQVQPPQLVYRGKQTYFVAQDLTPGGMYETQVRAINRIGAGSWSQWMRFTAAAAAPGVPEELRVLVKSATHLGVSWQPPLQENGAPVTSYTLKSASQERKEDDSEEEVKEPPSSEFHNCYQGPQTCAELRNLSPYTRYHFRIQASNSAGTGNSSDVISVCTPAAVPGAPQMQGYEFTAQEVTLNWTQPAAHGSPICSYNIEYGERTIATPDACTRYTVSGLMPETGYKFRVQAVNAIGAGAFSAYAKLTTQPAPPAPPRLECSGAGHNYIKLKWGENGNGKVVNSNPSGNGGDFTKYFVEMYVARAKQFQAVYSGTNCMCKVHKLQERSSYTFRIYAHTDRAGDGDYSEEFVFETSATLPANIKPPRVVQEGSVCLMELPGQLGMQLTLEWQHSKNSFNDRVEYELQYAVLGAAELEGESLSPKGRSSSSSGSSNGAPINLPNHDYRQLYRGPETKFTIDNLAAGTCYQFRVCPVRIAAGGELLYGQPSSPLRYQVPSELDPSSATCHHHLHGSTATPAMASSQRSSRKLSAGNGSTNGLHMRSVSASAISGASGVGADPVAIGRLQQELSGFNACADPQHHHHHHHHHHHQPCGGGVGGAGGISGATDSHHQHQHHMHHSHHMHHAHHPHTGMGGSSSNSSSSTAAAISSSLAQAGGLRRIVCKVTSLYSNRRRLSDQQKAVCIVVSFLVGTFLVAMLVNMLRG
Protein: Immunoglobulin kappa variable 3-20 (Ig kappa chain V-III region B6) (Ig kappa chain V-III region GOL) (Ig kappa chain V-III region HAH) (Ig kappa chain V-III region HIC) (Ig kappa chain V-III region IARC/BL41) (Ig kappa chain V-III region NG9) (Ig kappa chain V-III region SIE) (Ig kappa chain V-III region Ti) (Ig kappa chain V-III region WOL) (P01619)
Organism: Homo sapiens (Human)
Function: V region of the variable domain of immunoglobulin light chains that participates in the antigen recognition. Immunoglobulins, also known as antibodies, are membrane-bound or secreted glycoproteins produced by B lymphocytes. In the recognition phase of humoral immunity, the membrane-bound immunoglobulins serve as receptors which, upon binding of a specific antigen, trigger the clonal expansion and differentiation of B lymphocytes into immunoglobulins-secreting plasma cells. Secreted immunoglobulins mediate the effector phase of humoral immunity, which results in the elimination of bound antigens. The antigen binding site is formed by the variable domain of one heavy chain, together with that of its associated light chain. Thus, each immunoglobulin has two antigen binding sites with remarkable affinity for a particular antigen. The variable domains are assembled by a process called V-(D)-J rearrangement and can then be subjected to somatic hypermutations which, after exposure to antigen and selection, allow affinity maturation for a particular antigen.
Subcellular location: Secreted {ECO:0000303|PubMed:20176268, ECO:0000303|PubMed:22158414}. Cell membrane {ECO:0000303|PubMed:20176268, ECO:0000303|PubMed:22158414}.
Interaction partners:
Sequence:
METPAQLLFLLLLWLPDTTGEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSP
Protein: Mediator of RNA polymerase II transcription subunit 16 (Mediator complex subunit 16) (Thyroid hormone receptor-associated protein 5) (Thyroid hormone receptor-associated protein complex 95 kDa component) (Trap95) (Vitamin D3 receptor-interacting protein complex 92 kDa component) (DRIP92) (Q6PGF3)
Organism: Mus musculus (Mouse)
Function: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Mediator of RNA polymerase II transcription subunit 29
- Mediator of RNA polymerase II transcription subunit 15
- Mediator of RNA polymerase II transcription subunit 12
- Mediator of RNA polymerase II transcription subunit 23
- Mediator of RNA polymerase II transcription subunit 14
- Mediator of RNA polymerase II transcription subunit 24
- Mediator of RNA polymerase II transcription subunit 1
- Mediator of RNA polymerase II transcription subunit 18
- Mediator of RNA polymerase II transcription subunit 10
- Mediator of RNA polymerase II transcription subunit 17
Sequence:
MDLAYVCEWEKWAKSTYCPSLPLACAWSCRNLIAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVHRLSLQTMAVFYSSAPRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLEPKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQPLRLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAVTQWEQRWIKNCLCGGLWRRVPLSCS
Protein: HpaB protein (Q3BYL6)
Organism: Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10) (Xanthomonas campestris pv. vesicatoria)
Interaction partners:
- Flagellar biosynthetic protein FlhB
- Type 3 secretion system ATPase
- HpaA protein
- HrpE
- HrpD6 protein
- HrcV protein
- HpaC protein
- HpaE protein
- Xanthomonas outer protein F1
- HrpB2 protein
Sequence:
MSSARFETIVRQMCEALDLPDVESVLDRRVLWVEGFEVYLHLPTPQPEDDVKEEALYLRIAYGLPPAGRTLTVFRLLLEANLSVYAQDQAQLGLNDDGVIVLIVRVPLDDDVDGAWICDLLAHYAEHGRYWNNNIFVAHDEMFEGIATGNYLWLRA
Protein: Putative eukaryotic translation initiation factor 4 gamma (Q1MSJ0)
Organism: Oryza glaberrima (African rice)
Interaction partners:
Sequence:
MEKDHQPVISLRPGGGGGGPRPGRLFSPAFAAAASGSGDLLRSHVGGASKIGDPNFEVRERVRYTRDQLLELREIVDIPEAILRIKQEIDIELHGEDQIWGRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWDNIREAKAAHASSGRQQEQVNRQDQLNHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITFKRVLLNNCQEAFEGDESLRAEIAKLTGPDQEMKRRDKERIVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTYFIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREEIKAKTISEIHDEAMKTLGLRPGATGLTRNGRNAPGGPLSPGGFPMNRPGTGGMMPGMPGTPGMPGSRKMPGMPGLDNDNWEVPRSKSMPRGDSLRNQGPLLNKPSSINKPSSINSRLLPHGSGALIGKSALLGSGGPPTRPSSLMASPTHTPAQTAPSPKPVSAAPAVVPVTDKAAGSSHEMPAAVQKKTVSLLEEYFGIRILDEAQQCIEELQCPEYYSEIVKEAINLALDKGPNFIDPLVRLLEHLHTKKIFKTEDLKTGCLLYAALLEDIGIDLPLAPALFGEVVARLSLSCGLSFEVVEEILKAVEDTYFRKGIFDAVMKTMGGNSSGQAILSSHAVVIDACNKLLK
Protein: Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.134) (Q21905)
Organism: Caenorhabditis elegans
Subcellular location: Endoplasmic reticulum membrane {ECO:0000256|RuleBase:RU363109}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU363109}. Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
- Putative protein heh-1
- Probable very-long-chain enoyl-CoA reductase art-1
- Troponin I 4
Sequence:
MGDFKNMILFIYTLVLFILHGYGFLYIFHAEYTSEFKYPEIMWFLLFITSLQYLDIPFSFFLTKSNPVAVFVQVSGRLLVLWVASHMVSWKYAAFSLVAVYLLSELCRGPYYLSNCLGTPNRSLTWLRYNAFKVLYPVGFTCEALVFINVFFVSGKIPIDIKDRYFQYSLLFTVFFLTIVTFLYRSMSRKAAQKNKTLAKME
Protein: RNA-directed RNA polymerase (EC 2.7.7.48) (Q54H25)
Organism: Dictyostelium discoideum (Social amoeba)
Interaction partners:
- Uncharacterized protein
- Putative RNaseIII
- Argonaut-like protein
- Argonaut-like protein
- DNA
Sequence:
MEVDSKSKEIEQYDQWLYCSNCLNGVLEYKHLGFYIDMEGVYLEVLRDSSSIFNNNHFYDHNYRDGADIIDQLPNIDRYHLVSKSLQQQYSTTVNDNSYYMFDSRKHDLLVQKPYLMCSYKECYNIIGFYHMNPFKKVFSFRLDHAKTILDFGYEDKPWKFFLNNPIFEKIQVYKNQDIDYYGFNSINKKYNNNNDNNNNFNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNSLNSLFKNNDNSNKFQPRMETKDVHYKPTKLPQEKPMIPKFKEGVEIIPRDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYDVLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVVDYIRKTDLNYRPRILGLTASLVSIGNSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQPELVSFKTSGQESLIETSICEFLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIYIEYTKVLIELYALLSVLSTEGPKQVLTRLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRILVFVETRFGASNLTSMLKKEPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDKDLKILDILSSENLLNNSINQILSNRERQAITKNQFLNWKKLNINNEYFTNNQLDGGPLDKDIKCVILSIYHIEIDIETFRELLLFQLPDIINQVDQVSIRMEGDDEYLSSYIIVILNTCIDKEQSIYRLKSLLNINGLKYWMIDRSSFHFEDDNINDLSQSKNKNYSIRSFEYGNMSSPTKYHGIGQLDDSFELFYGKREMFFTKKTRFQRYRLNLKLTDIESTFLLVNDKYQNIVHILLIVKRPLIFEEEKKTHIVFWNKSKPKKDDFGQAFVYRLTLSTIDNEIKEVIKPLIANGFRMYESSLELNCFIQGGINKNNNCMIIDLNLQYIKRNLEIHYLLQCLQSQSSYGRVLNQDFIVEINNLLAFGKQEEAEFIITSLISKRTKFINYKEFIGDCLKNFLPDPYYAKKKDLSTKSGEFTMIRDVFITPSRTIFIQPTLQRSCRAVRKFGSSNFIVVKIVNESLEPLQGVNNKHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKIWSGIEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDITRNTHEFTEGCGEIGPELAKHLNENYNFRPSTCAYQVRIGGNKGVLVVNNQAPDPSGIYIRPSMVKFNPIDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNASKQAIVEFFPDITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVSNNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISDQYGANHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQIDQLVYIGDFLPNISLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNIEKKVSAWYHVAYSDLKDDRALGFYWIARSFKQMTLDQESQKKKNILVNSILDHMNKKKDTLFPLYESRLLIVKELTSFLNTLNDTVFKESTLEIIGSTATMLFDENSNLNLYLKLENQNDHMNLAEKNEILNQLKDEIKTSSFISAEACSIIKIQGDIPLFKFKIDKIQCLIGLETSKWYETLVQQQYITKNPSILSILFSIIDWSINSLFVDSETGEIINNSKVYSSLNLQKVIVENSMIPSIFNNKNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKHSVKNLTKSNLFSLLIDFCIINKYIDKCNPNELTNTTSNLTIGNWVKLIEIASRYFSVDNNNNNNNKGHKRKKNKNLDEYNTNNLGDTILSFFRFYSDSFGRSIYGNEPFIIKLFSKDANDIENQILNPSTESHKTALLFYQESFRHAFHSLSTFVSVEEFLSNCLKTTKKIMPIKKNQINLLQERSVNEEIVKNVQLCGCSIKIDTNVKNPYILIDGKPQQIRLAQNAIRDLLSIKTENYNLAITKRNNKRKNFTLGDFAKNKIK
Protein: Protein yellow (P09957)
Organism: Drosophila melanogaster (Fruit fly)
Function: Controls the pigmentation pattern of the adult cuticle and larval mouth parts.
Subcellular location: Secreted.
Interaction partners:
- Zinc finger protein su
- Modifier of mdg4
- Sex-regulated protein janus-B
- Protein white
Sequence:
MFQDKGWILVTLITLVTPSWAAYKLQERYSWSQLDFAFPNTRLKDQALASGDYIPQNALPVGVEHFGNRLFVTVPRWRDGIPATLTYINMDRSLTGSPELIPYPDWRSNTAGDCANSITTAYRIKVDECGRLWVLDTGTVGIGNTTTNPCPYAVNVFDLTTDTRIRRYELPGVDTNPNTFIANIAVDIGKNCDDAYAYFADELGYGLIAYSWELNKSWRFSAHSYFFPDPLRGDFNVAGINFQWGEEGIFGMSLSPIRSDGYRTLYFSPLASHRQFAVSTRILRDETRTEDSYHDFVALDERGPNSHTTSRVMSDDGIELFNLIDQNAVGCWHSSMPYSPQFHGIVDRDDVGLVFPADVKIDENKNVWVLSDRMPVFLLSDLDYSDTNFRIYTAPLATLIENTVCDLRNNAYGPPNTVSIPKQAVLPMGPPLYTKQYRPVLPQKPQTSWASSPPPPSRTYLPANSGNVVSSISVSTNSVGPAGVEVPKAYIFNQHNGINYETSGPHLFPTHQPAQPGGQDGGLKTYVNARQSGWWHHQHQG
Protein: Methyl-CpG-binding protein 2 (MeCp-2 protein) (MeCp2) (D3YJ43)
Organism: Homo sapiens (Human)
Subcellular location: Nucleus {ECO:0000256|PIRNR:PIRNR038006}. Note=Colocalized with methyl-CpG in the genome. {ECO:0000256|PIRNR:PIRNR038006}.
Interaction partners:
Sequence:
MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTPVTERVS