wanglab/gogpt-training-data huggingface dataset:
Protein: Syntaxin-16 (Syn16) (O14662)
Organism: Homo sapiens (Human)
Function: SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.
Subcellular location: Golgi apparatus membrane; Single-pass type IV membrane protein.; SUBCELLULAR LOCATION: [Isoform C]: Cytoplasm.
Interaction partners:
- Vesicle transport through interaction with t-SNAREs homolog 1A
- Vesicle-associated membrane protein 4
- Syntaxin-6
- Vacuolar protein sorting-associated protein 45
- Syntaxin-10
- Vesicle-associated membrane protein 3
- Synaptobrevin homolog YKT6
- Vesicle transport through interaction with t-SNAREs homolog 1B
- Alpha-soluble NSF attachment protein
- Synaptosomal-associated protein 29
Sequence:
MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAAELDELADDRMALVSGISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLDDSSEEEHAIEITTQEITQLFHRCQRAVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR
Protein: Bonus, isoform D (A0A0B4KH12)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MDMDLEQLKNDFLPLIAGIKQEQLDAVPTDALPQMSTPNTASGAPTTSSLSSSSLSLSNPCDSAEKRSESNSSASAKFTLFKCVYCAQLLGSNDRPKLLECLHVACAQCVSTKFSELDRSLPPLIHCPVCDNASQQEFIVDNQFLIEQCTAGDSGDGVGLLGLTGEGQKSSAAASIQCSSCSDGAVATSWCVDCSEYICDSCVQAHQRLKITKDHTIKPKDEANNEQLAGAAGVDKLHMCQLHPQEKLSLFCETCDKLTCRDCQLSDHRDHKYKFAHEIATESRQALSTLVSEINYKRFLLSSATKVIDDRQQLIHDKKKDLIKEITAMAVKITNTVNTRGKQLIMRLNEVCDSKLKVLVEKKETLQLLSDNTDHCIDFMQNALEKGSDFAILSSKKSLVRHLQKLKCQRADIPNPEIPVRIQVQLNQVSDLQKVISQLGIIIVDGKPYPPTPSPNGTPQPQHPPRQPPSPNMAPPLRPGLPPGMPAGLSPNGPPVNFGPQNGPPLYSNAAQQQFNNLSMSRSFPGDGSGKVRFGGMPPVGMQRHGQPHVSSSTHPQNMDISLRGLLNNQAAQSPNAHMAFNGPPSYPGGPQGAPAPAHQPMGPQMRPHFMPGQQGFSQGGGPGGGPRDANFMNSNARFQSQYQRMANHAQQAAAAAAMAGAAGGGGGQIPSPGALQRPQMMSNPMQNSLGFHGSQAGFNTGPPQTSPQLGGGGMHSLAKWHIPQSAQQSNMCSQQGPLLPFANGRQTSENFKISLKSPNTLKNSTPPSLGGGGAGHQGHGNGSSSAQLNAAALGLGPAVSILSNVTSTNPKTPSPSTHENTKDFTEPIDKVRDDSINDLIATIAKLDSNGVQVLPEGRTKTTSPQVHSSTDLSNTQEDDPNEDWCAVCLDGGELMCCDKCPKVFHQNCHIPAISSLPDESESWQCLLCVNIKELTKTEGSEKSSSGELSALELRILQRICLELYCQYEQSLNFREPESPANTSYYEIVSSPMSLDVIRTRLDPSSPNHYKDIAGFVSDVRLIFSNTYLFYQEDTKTYSNAKYLENFFEEQLAKWLPQFEGTKPQGKRNTSNSPALLGVNATGSPSPIENGRKSCGSASLGDSDGACLPAKRARRSAHE
Protein: Acetolactate synthase small subunit 2, chloroplastic (ALS-interacting protein 3) (Acetohydroxy-acid synthase small subunit 2) (Protein valine-tolerant 1) (Q9FFF4)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance. May play a role in valine and isoleucine-mediated feedback inhibition in roots. In vitro, inhibited by valine, but not leucine or isoleucine. Required for reproductive development and sodium homeostasis.
Subcellular location: Plastid, chloroplast {ECO:0000269|PubMed:28388946}. Peroxisome {ECO:0000269|PubMed:28388946}.
Interaction partners:
- Acetolactate synthase, chloroplastic
- 2-hydroxyacyl-CoA lyase
- Threonine dehydratase biosynthetic, chloroplastic
- Ketol-acid reductoisomerase, chloroplastic
- 3-isopropylmalate dehydrogenase 3, chloroplastic
- 3-isopropylmalate dehydrogenase 2, chloroplastic
- 2-isopropylmalate synthase 1, chloroplastic
- Dihydroxy-acid dehydratase, chloroplastic
- 2-isopropylmalate synthase 2, chloroplastic
- Acetolactate synthase small subunit 1, chloroplastic
Sequence:
MAATTTATSLFSSRLHFQNQNQGYGFPAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNASSGGDVYPVEPYNDFKPVLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEVTGDLRKMSALQTQLEAYGICEVARTGRVALVRESGVDSTYLRGYSLPL
Protein: Neuroglian (Q4PIU9)
Organism: Caenorhabditis elegans
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004479}; Single-pass type I membrane protein {ECO:0000256|ARBA:ARBA00004479}.
Interaction partners:
Sequence:
MRSFIFLLLLTGHISSGSIDWSAIETPPQFVHDKNADTVYFKVEKSGMSDESAKNTPGNLLEQTIHCYANGNPRPSYRWKKDGKTFLPSMFPEKVVQKPGEGSLVFSRLDESDAGLYQCEAENSNGTAVDRPVRVQETWIRHFKTAEPEVVVVEVGDPYQRNCSPPASNPYARVYWILMGKEPGHFETISSSHISSNEQGTLFFHYVNETDFKSDRYYTCTAENIELKDYKFGNQFSLQITNNKRRSLQQMPPTEQYVNQSSPIALQGNQHKLHCFFSGYPAPKPRWFHNGREISEDSDAAGFRFESYGKTLVFNVTQDKAGKYDCRFATQQDIDRTFNVVVEAAPYWPLGPPPNTNTSEGEKVIFDCTTYGKPTPKVTFYKNGVEIESQKDDRYLIEGTRLTIFDVKKGTYGKGDNAVYQCKSENKHGWLWTNFYLNLLAFKPQLLIDPGKEEVEAVAGKKVTLECKFFASPNAAVKWEAPMISGSKGNQIPADAYGVGKLVFSEVTAAEEGEYECIGTNKYGQATGLITLKVRKPTIVQPFPRVEEVRMAGEEMRLACDATADNQLEVKYEWLVDGKSLPEDRISSGHYKIDDDHSLVISNPTQDDTAKYKCVVSTKLDQVEKEIKIQFKDVPVAVHSAWVQTCDKNSLTAFIKFEHYESIHTIAPIKEFWVQYQIDSETEGSQWRTHPVPSAAHPNDKIDNNLRHTTGDATVSLQPFGKYVFRVIARNSVGDSAARLAKDQCETPAKQPDKNPDEVAAKGTSPENIIVQWKPMSREEWNGADFHYVVKYRPKDEDQRVGDWKEVAVEDPFADRVTVNLDDEKDVKPFQPYEVQVQAVNSEGRTNVVPETVEGRTGEGVPSSIPSGLRVLEKSGTTVTLAWNGVDPQTANGNFTGYKITYWVDEADQDSDDSSEDDEDDEKRKFRWKRSIRVKRQSGIRKTVVFGPSATQGTLTDLKPATLNHAYIQVTNGAHEGSASDTIDFQTDEGVPSPVRSLRAYPMNSKVGGEKGVVVLVWKKPRQTNGKLARYEVEYCKTQNGKLVEKSCPRKQIDADSKEIRITGLENETPYRFILRAHTSAGEGDPNSSDATTLPETTAAGVDPGVPSLVENAIGDKYFNVSFRPAKYDDESRAPVGNTYEVQYKPQDADEWETVKPADDGLTVHVDGLSPGTKYDVRVAALQVDPEGGETTKTLSGISKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVVCRQRGQNYPVSQREREQGREPILGKPDYKTDDDEKRSLTGSKAESETDSMAQYGDTDPGVFTEDGSFIGQYVPQKSLMPAERPEKGSTSTFV
Protein: Putative ATP-binding cassette protein subfamily G,member 2 (Q4QJ70)
Organism: Leishmania major
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
Sequence:
MPPPAATRAPTEDTYTDYSFTPISIDEPDVHHHQRRDSGKVDSQLHGSIAEFDSSTQRAIGVPSSYSLPLSWHRLSYSVGKKRILCGLTGTALPGRCLAILGSSGAGKTTFLNAICDRLASGGELRLSGRRQLGDCEFERHFRKAMGFVAQDDIISPLSTPYDALWFSLRTRRGTSRAETEERVQEMLNVLRLQHCRDTKVGIPGLESGLSGGERKRCSIGIELICDLKILLLDEPTSGLDSVTSAKVVHLLRQLSRTGRTVIYTIHQPTAEVLSYFDDVMLMTQGRIAYHGTMAASLDYFESIGFSCPSKYTPTDYYMVLLQDSVTSKVLIKRWRKYLKNGPRTPHTAAVRLAKSRGESSAARFLDAYIAKFGSSPAVQLYELTRRTMTEISRDYLYLFSYMAQAIFFAIVVGLIFLNVRANVEGIQDRQGVLFMTVMNRAMSSTFIMINTFNNVRAVFMREQQAGAYSPLMFFLGRSFAEFPVQILAVLVESCILYWMVGLHRHPGSFFYYFGVIALLSQVATGLGFAISASCPSVVVSSALAPLVLIPLALGGGLLASTDRLRPYWYWLEKPSFMRHAYILVLRNELHNVPHIACDYYRWGDGYCINQARDGRTVMRLLGFDGDPQSVSVYMWVSLAIMFFLLRSISVIALTVASCARTA
Protein: Complexin (Q8IPM8)
Organism: Drosophila melanogaster (Fruit fly)
Function: Positively regulates a late step in synaptic vesicle exocytosis.
Subcellular location: Membrane {ECO:0000305}; Lipid-anchor {ECO:0000305}.
Interaction partners:
- Syntaxin-1A
- Synaptobrevin
- Synaptotagmin 1
- Synaptosomal-associated protein 25
- Unc-13, isoform E
- Rab3 interacting molecule, isoform F
- Tomosyn, isoform C
- Protein ROP
- Ras-related protein Rab-3
- Neuronal synaptobrevin, isoform J
Sequence:
MAAFIAKQMVGNQLSAVKGAVGGDGGDDGDDKEKAEEEERERQEAIKEAEDRRKEKHRKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ
Protein: Glutathione S-transferase L2, chloroplastic (AtGSTL2) (EC 2.5.1.18) (GST class-lambda member 2) (Q9M2W2)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Catalyzes the glutathione-dependent reduction of S-glutathionylquercetin to quercetin. In vitro, possesses glutathione-dependent thiol transferase activity toward 2-hydroxyethyl disulfide (HED).
Subcellular location: Plastid, chloroplast {ECO:0000269|PubMed:19174456}.
Interaction partners:
- Glutathione S-transferase DHAR2
- Glutathione S-transferase Z1
- Glutathione S-transferase U28
- Glutathione S-transferase U12
- Glutathione S-transferase F13
- Glutathione S-transferase DHAR3, chloroplastic
- Glutathione S-transferase U21
- Glutathione S-transferase U19
- Glutathione reductase, chloroplastic
- Glutathione S-transferase U24
Sequence:
MSVGLKVSAFLHPTLALSSRDVSLSSSSSSLYLDRKILRPGSGRRWCKSRRTEPILAVVESSRVPELDSSSEPVQVFDGSTRLYISYTCPFAQRAWIARNYKGLQNKIELVPIDLKNRPAWYKEKVYSANKVPALEHNNRVLGESLDLIKYIDTNFEGPSLTPDGLEKQVVADELLSYTDSFSKAVRSTLNGTDTNAADVAFDYIEQALSKFNEGPFFLGQFSLVDVAYAPFIERFRLILSDVMNVDITSGRPNLALWIQEMNKIEAYTETRQDPQELVERYKRRVQAEARL
Protein: AT rich interactive domain 2 (ARID, RFX-like), isoform CRA_d (AT-rich interaction domain 2) (F8WCU9)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYNYQQHSVSDYLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNKSHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAVILRNLSFEEGNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLEVLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEHPSSSHQMLSEIRPQAIEQVQTQTHVASAPASRAVVAQHVAPPPGIVEIDSEKFACQWLNAHFEVNPDCSVSRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDSSSNGQAHIHVVGVKRRAIPLPIQMYYQQQPVSTSVVRVDSVPDVSPAPSPAGIPHGSQTIGNHFQRTPVANQSSNLTATQMSFPVQGVHTVAQTVSRIPQNPSPHTHQQQNAPVTVIQSKAPIPCEVVKATVIQNSIPQTGVPVSIAVGGGPPQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHTVVPGQIPSGTPVTVIQQAVPQSHMFGRVQNIPACTSTVSQGQQLITTSPQPVQTSSQQTSAGSQSQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQMVTIAGVPSPQASRVGFQNIAPKPLPSQQVSSTVVQQPIQQPQQPTQQSVVIVSQPAQQGQTYAPAIHQIVLANPAALPAGQTVQLTGQPNITPSSSPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQQPQQVQMQVQPQQSNAGVGQPASGESSLIKQLLLPKRGPSTPGGKLILPAPQIPPPNNARAPSPQVVYQVASNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGVQTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFAPATVSQGNATQLIAPAGITMSGTQTGVGLPVQTLPATQASPAGQSSCTTATPPFKGDKIICQKEEEAKEATGLHVHERKIEVMENPSCRRGATNTSNGDTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCSLISNGPSLELGENGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDKGDGSHLSKNIPNHKTSNHVGNGEISPMEPQGTLDITQQDTAKGDQLERISNGPVLTLGGSSVSSIQEASNAATQQFSGTDLLNGPLASSLNSDVPQQRPSVVVSPHSTTSVIQGHQIIAVPDSGSKVSHSPALSSDVRSTNGTAECKTVKRPAEDTDRETVAGIPNKVGVRIVTISDPNNAGCSATMVAVPAGADPSTVAKVAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQPGDPMRKPGQNFMCLWQSCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQRFSFITHLQDKHCSKDALLAGLKQDEPGQAGSQKSSTKQPTVGGTSSTPRAQKAIVNHPSAALMALRRGSRNLVFRDFTDEKEGPITKHIRLTAALILKNIGKYSECGRR
Protein: Heparin-binding hemagglutinin (Adhesin) (A5TZK3)
Organism: Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)
Function: Required for extrapulmonary dissemination. Mediates adherence to epithelial cells by binding to sulfated glycoconjugates present at the surface of these cells; binds heparin, dextran sulfate, fucoidan and chondroitin sulfate. Promotes hemagglutination of erythrocytes of certain host species. Induces mycobacterial aggregation.
Subcellular location: Cell surface {ECO:0000269|PubMed:9064359}.
Interaction partners:
Sequence:
MAENSNIDDIKAPLLAALGAADLALATVNELITNLRERAEETRTDTRSRVEESRARLTKLQEDLPEQLTELREKFTAEELRKAAEGYLEAATSRYNELVERGEAALERLRSQQSFEEVSARAEGYVDQAVELTQEALGTVASQTRAVGERAAKLVGIELPKKAAPAKKAAPAKKAAPAKKAAAKKAPAKKAAAKKVTQK
Protein: Vacuolar segregation protein 7 (P53950)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Positively regulates FAB1 kinase activity. Major activator of FAB1 during hyperosmotic shock and can elevate levels of PtdIns(3,5)P2 in the absence of VAC14 and FIG4. Directly involved in vacuolar membrane scission. Required for normal vacuole acidification, inheritance and morphology.
Subcellular location: Vacuole membrane {ECO:0000269|PubMed:19037259, ECO:0000269|PubMed:9372916}; Single-pass type II membrane protein {ECO:0000269|PubMed:19037259, ECO:0000269|PubMed:9372916}.
Interaction partners:
- 1-phosphatidylinositol 3-phosphate 5-kinase FAB1
- Vacuole morphology and inheritance protein 14
- Polyphosphoinositide phosphatase
- Autophagy-related protein 18
- Phosphatidylinositol 3-kinase VPS34
- Vacuolar protein sorting-associated protein 30
- Serine/threonine-protein kinase VPS15
- Vacuolar protein sorting-associated protein 38
- PtdIns3K complex I subunit atg38
- Autophagy-related protein 14
Sequence:
MTEEDRKLTVETETVEAPVANNLLLSNNSNVVAPNPSIPSASTSTSPLHREIVDDSVATANTTSNVVQHNLPTIDNNLMDSDATSHNQDHWHSDINRAGTSMSTSDIPTDLHLEHIGSVSSTNNNSNNALINHNPLSSHLSNPSSSLRNKKSSLLVASNPAFASDVELSKKKPAVISNNMPTSNIALYQTARSANIHGPSSTSASKAFRKASAFSNNTAPSTSNNIGSNTPPAPLLPLPSLSQQNKPKIIERPTMHVTNSREILLGENLLDDTKAKNAPANSTTHDNGPVANDGLRIPNHSNADDNENNNKMKKNKNINSGKNERNDDTSKICTTSTKTAPSTAPLGSTDNTQALTASVSSSNADNHNNNKKKTSSNNNGNNSNSASNKTNADIKNSNADLSASTSNNNAINDDSHESNSEKPTKADFFAARLATAVGENEISDSEETFVYESAANSTKNLIFPDSSSQQQQQQQQPPKQQQQQQNHGITSKISAPLLNNNKKLLSRLKNSRHISTGAILNNTIATISTNPNLNSNVMQNNNNLMSGHNHLDELSSIKQEPPHQLQQQQPPMDVQSVDSYTSDNPDSNVIAKSPDKRSSLVSLSKVSPHLLSSTSSNGNTISCPNVATNSQELEPNNDISTKKSLSNSTLRHSSANRNSNYGDNKRPLRTTVSKIFDSNPNGAPLRRYSGVPDHVNLEDYIEQPHNYPTMQNSVKKDEFYNSRNNKFPHGLNFYGDNNVIEEENNGDSSNVNRPQHTNLQHEFIPEDNESDENDIHSMFYYNHKNDLETKPLISDYGEDEDVDDYDRPNATFNSYYGSASNTHELPLHGRMPSRSNNDYYDFMVGNNTGNNNQLNEYTPLRMKRGQRHLSRTNNSIMNGSIHMNGNDDVTHSNINNNDIVGYSPHNFYSRKSPFVKVKNFLYLAFVISSLLMTGFILGFLLATNKELQDVDVVVMDNVISSSDELIFDITVSAFNPGFFSISVSQVDLDIFAKSSYLKCDSNGDCTVMEQERKILQITTNLSLVEESANNDISGGNIETVLLGTAKKLETPLKFQGGAFNRNYDVSVSSVKLLSPGSREAKHENDDDDDDDGDDGDDENNTNERQYKSKPNARDDKEDDTKKWKLLIKHDYELIVRGSMKYEVPFFNTQKSTAIQKDSMVHPGKK
Protein: Small ribosomal subunit protein uS15 (40S ribosomal protein S13) (P62277)
Organism: Homo sapiens (Human)
Subcellular location: Cytoplasm {ECO:0000269|PubMed:23636399}. Nucleus, nucleolus {ECO:0000269|PubMed:34516797}.
Interaction partners:
- Small ribosomal subunit protein eS26
- Large ribosomal subunit protein eL20
- Elongation factor 2
- Large ribosomal subunit protein eL21
- Large ribosomal subunit protein eL14
- Small ribosomal subunit protein uS14
- Small ribosomal subunit protein uS17
- Large ribosomal subunit protein eL28
- Small ribosomal subunit protein eS27
- Large ribosomal subunit protein eL31
Sequence:
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA
Protein: At3g06435 (Expressed protein) (Q3EBB7)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Uncharacterized protein
- MATH domain/coiled-coil protein
- At2g19970 superfamily protein)
- Dirigent protein 23
- Subtilisin-like protease SBT4.1
- Subtilisin-like protease SBT4.13
- Jacalin-related lectin 23
- Pentatricopeptide repeat-containing protein At1g63130
Sequence:
MAKKSKRNQNNKGKTKIPQRVEVFGVNDPVTRFGWTIMAFLCVFGAVGAVNALEIQMDVSYLVMFVVAIYVIPVLHSIFSEAPSPVYRAHRWVRTVIPLILLTIIYFTVFNFQTLAASVLIISVVFGIFVLVQLVFPVERFYFFYVVLILLFGCCSAVFAGQYDPKTQPFGFCLLTLFVFEMFFYFFYYPGPTNRAFKFY
Protein: Ribonuclease H2 subunit A (RNase H2 subunit A) (EC 3.1.26.4) (Ribonuclease HI large subunit) (RNase HI large subunit) (Ribonuclease HI subunit A) (Q10236)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. Participates in DNA replication.
Interaction partners:
- Ribonuclease H2 subunit B
- Ribonuclease H
- DNA polymerase epsilon catalytic subunit A
- DNA topoisomerase 1
- Uncharacterized protein C12B10.15c
- DNA primase small subunit
- Proliferating cell nuclear antigen
- DNA polymerase delta catalytic subunit
- DNA polymerase alpha catalytic subunit
- Inheritance of peroxisomes protein 2
Sequence:
MKDDHDAWEPEELVSDNNSSENELQEDQNSSITFLPPSVNKSNPAKSNYYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFDLTNYGFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDDDTPTLNFTQKKKPNPASRSWFGSEFYF
Protein: Intermediate capsid protein VP6 (P18610)
Organism: Rotavirus A (strain RVA/Cow/United Kingdom/UK/1975/G6P7[5]) (RV-A)
Function: Intermediate capsid protein that self assembles to form an icosahedral capsid with a T=13 symmetry, which consists of 230 trimers of VP6, with channels at each of its five-fold vertices. This capsid constitutes the middle concentric layer of the viral mature particle. The innermost VP2 capsid and the intermediate VP6 capsid remain intact following cell entry to protect the dsRNA from degradation and to prevent unfavorable antiviral responses in the host cell during all the replication cycle of the virus (By similarity). Nascent transcripts are transcribed within the structural confines of this double-layered particle (DLP) and are extruded through the channels at the five-fold axes. VP6 is required for the transcription activity of the DLP (By similarity).
Subcellular location: Virion {ECO:0000255|HAMAP-Rule:MF_04129}. Note=Component of the intermediate capsid. Also found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging. {ECO:0000255|HAMAP-Rule:MF_04129}.
Interaction partners:
Sequence:
MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVETARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLRKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPYSASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFPRVINSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFEHQATVGLTLRIESAVCESVLADASETMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLVK
Protein: 2,5-diketo-D-gluconic acid reductase B (2,5-DKG reductase B) (2,5-DKGR B) (25DKGR-B) (EC 1.1.1.346) (AKR5D) (P30863)
Organism: Escherichia coli (strain K12)
Function: Catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).
Subcellular location: Cytoplasm {ECO:0000250}.
Interaction partners:
- L-glyceraldehyde 3-phosphate reductase
- Esterase FrsA
- Glyoxylate/hydroxypyruvate reductase B
Sequence:
MAIPAFGLGTFRLKDDVVISSVITALELGYRAIDTAQIYDNEAAVGQAIAESGVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQNRKVVAWAKQHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSVIPSSTKRKNLESNLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD
Protein: Paralemmin-1 (Paralemmin) (O75781)
Organism: Homo sapiens (Human)
Function: Involved in plasma membrane dynamics and cell process formation. Isoform 1 and isoform 2 are necessary for axonal and dendritic filopodia induction, for dendritic spine maturation and synapse formation in a palmitoylation-dependent manner.
Subcellular location: Cell membrane {ECO:0000269|PubMed:14978216}; Lipid-anchor {ECO:0000269|PubMed:14978216}; Cytoplasmic side {ECO:0000269|PubMed:14978216}. Cell projection, filopodium membrane {ECO:0000269|PubMed:14978216}; Lipid-anchor {ECO:0000269|PubMed:14978216}. Cell projection, axon {ECO:0000250}. Cell projection, dendrite {ECO:0000250}. Cell projection, dendritic spine {ECO:0000250}. Basolateral cell membrane {ECO:0000250}; Lipid-anchor {ECO:0000250}. Apicolateral cell membrane {ECO:0000250}; Lipid-anchor {ECO:0000250}. Note=Translocation to the plasma membrane is enhanced upon stimulation of neuronal activity.
Interaction partners:
- Palmitoyltransferase ZDHHC13
- Palmitoyltransferase ZDHHC8
- Synaptotagmin-7
- Palmitoyltransferase ZDHHC17
Sequence:
MEVLAAETTSQQERLQAIAEKRKRQAEIENKRRQLEDERRQLQHLKSKALRERWLLEGTPSSASEGDEDLRRQMQDDEQKTRLLEDSVSRLEKEIEVLERGDSAPATAKENAAAPSPVRAPAPSPAKEERKTEVVMNSQQTPVGTPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTTLLPRQPLPLGIKVYEDETKVVHAVDGTAENGIHPLSSSEVDELIHKADEVTLSEAGSTAGAAETRGAVEGAARTTPSRREITGVQAQPGEATSGPPGIQPGQEPPVTMIFMGYQNVEDEAETKKVLGLQDTITAELVVIEDAAEPKEPAPPNGSAAEPPTEAASREENQAGPEATTSDPQDLDMKKHRCKCCSIM
Protein: Laminin alpha 4 (Laminin subunit alpha-4 precursor) (Q2TJF5)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004479}; Single-pass type I membrane protein {ECO:0000256|ARBA:ARBA00004479}. Secreted, extracellular space, extracellular matrix, basement membrane {ECO:0000256|ARBA:ARBA00004302}.
Interaction partners:
Sequence:
MASLLSGSVCFLYVLSALVPADSTQQFNTVYRVCARGYFLSDQETCLPCNCKGHADSCEDITGICIDCRDHTLGDFCELCEDRFLPVFLPDGTFMCRPCACPLSLESNNFAAHCDRRGEFLRCVCQDGYAGHYCERCAPGYYGNPMELGNSCKKCDCNGNSDPNLIFNECHNVTGKCLNCWGDTAGDNCERCAPGFYGDAISAKDCQECQCNKCGTASCDDRSGVCHCKPGVTGQLCDRCEDGHSGFCTCMGCRRCECASAALRATCHPLTHSCQCRPGAGGRYCERCLPGFWDYSPSGCRKCDCPEENCDLHTGECLPELSQISECNISCDACIWNLIGDIRQSNKTLDQVRNSVLNISTGAAANDRLKYYNYTAHRLQAQFRGWRKNYAMMSGDTDVLEEETQNLLTDMDQFAEEENEVQNLGKQVDQETLNSSTRAKTLTANLSSLNVLIEDMIRDWELYGVYQELDPQVKLQKLAEAERILGWMRKLNLSPKEPLATDESSEAHELLRRVRSFDRNLMTTQGRLPPMQEVLGRFTSKLLQAQDLLSKAEDALKQAINKYKSNQLKLQRREAQQQRLKDIQDGVDQTIVNAAAVLSEANHTVLEVEDVITNVREQHAEIDGARVLLERRTEKISQSDRELVLRAEDHADQLQRHAEEPQHNLKGSDANGHVQKALNAFNVYDNIVKSVDDANITSLTALNISSRTHGAVDKLSSQLNLMRSQSAKVLNEASSLHFQQQDSESIVLDNKKYIEETNEMMDGSSKKIAKIITEINAIHTDRTPKRLQFTQEVAEGTLNRSAEVLEKVTPILKRVEQWDGNMKSEAYSAAAFDRTVLSAGEAVKDLSAIVPELLSKLRVVEEKKPVNNVTTSIMKIRGLIAQARSVAKKVQVSMKFDGQSAVEVHPHTNLDELKTVTSISFYIRVDPDKDPIEDRFLLYLGDKQGKRDYMGLAIKNDNLVYVYKLGEEEVEIPLSSKPVSSWPPVFNFVKVERLGRHGKVFLTVPSQDTTAEQKFIQKGEPVGTDTLFDLDPKDMVFIVGGVPPGVTVPPILSLAPFVGCIELETLNNDVISLYNFKQLHKMDVKASAPCPRHKLAFSQSRVTSYLFDGTGYALVNNIERRGKIGVVTRFDIEVRTVANNGILFLMVNETNFFVLELKNGFLRLMYDFGFANGPVIIETNLAKLQINDARYHEVSVIYHHSKKIILLVDRSHVKSFESEKKPLPFSDIYIGGAPSRILQSRPELTSLIGLKGCVKGFQFQKEDFNLLEEQGTIGISSGCPEESFMSHKAYFTGNGYLSSSDKISPFQSFEGGLSFKTLQPSGLLFYHRDGSDEFSLSLENGAVVLQAKGTRVKSQKKHYSDGRSHFLVASVTNQKYEIVIDDKDKQDKKKPSSTSQSDNTPKAFYYGGSTSSSILNLTGCISYAYISRQDRDIEPEDFQRYSENVQASLQDCPIERPPSALLKDSRDSSRRSAGHSRKVGRDESGLPHGLKSNPLNIPEKEEASCYLSSRPRATPHANHYGGSAHSRHEYTGIASAIKHESHFSLSLKTRSAFGLIFYLADASGENSMALFLTHARLVFTFSSGQSQVRIRSKEKYNDGQWHDIIFIRAGNMGRMLIDGLTVLEDRAPGRNTSLLVQDPLYVGGVPPHQAMKNIQRTSVSSFTGCVRSLQLNGRSLTSASHSFGVTPCYEGPSEPGTYFAEEGGYVLLDDSFHFGSSFKMAMEVRPRVASGVLLHVFMEQKEYLTVYIYQSQVVVVVNNGIAEFSTHVSPTQEICDGNWHKITVIRDGSVLQLDVDSEVNHVVGSVSDAAQSSSSPVFIGGAPDSMLSHSLLSRRGFTGCMRSVSVNETPVSFSKAVLVSGSVGVGACPSA
Protein: Cyanovirin-N (CV-N) (P81180)
Organism: Nostoc ellipsosporum
Function: Mannose-binding lectin.
Interaction partners:
Sequence:
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQPSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE
Protein: Death-associated protein kinase 3 (E9QHI3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
- Beclin-1
Sequence:
MAGFRQEDVEIYYDMGEELGSGQFAIVRKCKEKSSGTEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIQHSNIITLHDIFENKTDVILILELVSGGELFDFLAEKESLTEEEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHQIKDGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKKRMTIEDSLQHSWIKVIKRRNVRPEESERKPERRRLKTTRLKEYTIKSHSSMPPNNTYINFERFSQVMEEIAAAEEGLRELEKNQRSCGEDVTALLSIYEEKESWYKEENESIAADLSQIKQELQKAQALRRQSQEEARAAMLSANALKRKFGRLENRYEVLAEQMDSEVRWVEELVRTISAENHTRSTSMA