wanglab/gogpt-training-data huggingface dataset:
Protein: Cytochrome C oxidase assembly factor (Q8GWM1)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Protein SCO1 homolog 2, mitochondrial
- FAD-linked sulfhydryl oxidase ERV1
- Cytochrome c oxidase assembly protein COX11
- Formin-like protein 14
- Apyrase 1
- Protein PLANT CADMIUM RESISTANCE 12
- Copper chaperone for superoxide dismutase, chloroplastic/cytosolic
- Protein PLANT CADMIUM RESISTANCE 11
- Mitochondrial import inner membrane translocase subunit TIM13
Sequence:
MAKSCKGLAEELVKCLSESICVKGEKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQVDMRARIRGNKGY
Protein: F-box/kelch-repeat protein At5g15710 (Q9LFV5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- HXXXD-type acyl-transferase family protein
- Thioredoxin-like protein YLS8
- RGS1-HXK1-interacting protein 1
- Pentatricopeptide repeat-containing protein At5g55840
- Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform
- TIP41-like protein
- AP-2 complex subunit mu
- Vacuolar fusion protein MON1 homolog
- carnosine N-methyltransferase
- E3 ubiquitin-protein ligase UPL7
Sequence:
MERLGFWGLLMGSVEKSLDSGNSLACSASAKNGDEESSTSSKQVSPLKGSGSRNTSPLGRVGSRNTSPSRQKVVKTKPRGLEEETVASFGKQVVADVQMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFRTLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSDKSFKVIATSDIYGDKSLPTEVYDSKTDKWSLHQIMPAVNLCSSKMAYCDSRLYLETLSPLGLMMYRLDSGQWEHIPAKFPRSLLDGYLVAGTQKRLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGCALQSCNSQVCFYEPRFDASVL
Protein: Internexin neuronal intermediate filament protein, alpha a (A2ATX5)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
- Coiled-coil domain containing 85A, like isoform X3
Sequence:
MSYGSDHYMSSSYRKLFGDNPRFAGSRMSNVSPRSSMSSSGFRSQSVSRSSASPAGYYKRSGRSSSFSPVHFDSVDFSQTSVLNNEFKIVRTNEKEQLQGLNDRFAMFIEKVRNLEQHNKVLETELVSLRQRQNEPSRLAELYQQEIRDLRAQVDELNNEKSHILIERDSIEEDLQKLRGKFEEEIRAREEAEQTLRSYKKDVDDATMVRVDLERKVESLLDEINFLRKVHDEEVTELTNMIQAAQISVEVELSKPDLTSALKDIRGQYETLASKNLQSAEEWYKSKFASLNEQATRTNEAMRATREEVNDYRRQLQSKTIEIETLRGTNESLERQIREMEEAHNAEVAGYQETIGQLDLELRNTKSEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETHFSSGVTFSSTPSITYGYQSRSAFTSTRNPKKEREEEGHPKSKTAAKREENTDENVGIKKTEKNDAVDVNSN
Protein: Paramyosin, short form (Miniparamyosin) (P35416)
Organism: Drosophila melanogaster (Fruit fly)
Function: Paramyosin is a major structural component of many thick filaments isolated from invertebrate muscles.
Subcellular location: Cytoplasm, myofibril. Note=Thick filaments of the myofibrils.
Interaction partners:
Sequence:
MALALKQRPSRFRPTTTTYEDNYGYTMNFYQPMLDYLDAKAKGLEVKKPHLPWVSERGLKQYRPSNAVRQYNADEIVRLSRTCAARADEILLNFRAQKRSPFSVQKLVDASRVTKHLEPDTVVERSRQRRRRRQEELEDLIKRDTLKILQRIRKIELDNELDKMSDDFKRSIRGKSASAIAQALLSESEKNIKTAKKEEEDYIAQTLVRSSRAVSRARSRSSSPLDGQYRAHALHIELMDDRLVDKLDHRVSSSLHNVKRQLSTLNQRTVEFYADSSKQTSIEIEQLNARVIEAETRLKTEVTRIKKKLQIQITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQYAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTANVSLVSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQVELKHVVEQVHEEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGSKRIISKLEARIRDLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNLILLQDALDKSTAKINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAESSLNIIRAKHRTFVTTSTVPGSQVYIQETTRTITE
Protein: Solute-binding protein SPO1773 (Q5LSJ5)
Organism: Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Function: Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
Subcellular location: Periplasm {ECO:0000250|UniProtKB:P37735}.
Interaction partners:
- TRAP transporter small permease protein
- TRAP transporter large permease protein
- 3-hydroxyanthranilate 3,4-dioxygenase
- TRAP transporter large permease protein
- TRAP transporter large permease protein
- Dihydrodipicolinate synthase family protein
Sequence:
MTISFKGLARGVACAALVLAALPAAAKEFRLGLITPPPHTWTKAAEAFGAELSEKSGGAHSVSVFPARQLGNEAQMLQQLQTGALDMAFMTVAEVSNRVPNMGAFYAPYLAGDINHAAAILRSDTARGMLAVLPQEAGVVGVGFGSAGMRQILSRGAVNSAADLSGLKLRITPFDPILDFYNALGAAPTPMPLPAVYDALANGQVDAIDMDVELINVLKYHEHADTILISNHMMFPMVGLISARVYAGMSDADKAMISELMAKHVDSTLDVYMVKEPEWTDALTKVGKTFKRVDQSFFGDAIAQWETIWADKAPSLPELRKTAADLQ
Protein: Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;2) (GLN1;2) (Q8LCE1)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Low-affinity glutamine synthetase. May contribute to the homeostatic control of glutamine synthesis in roots.
Subcellular location: Cytoplasm.
Interaction partners:
- Ferredoxin--nitrite reductase, chloroplastic
- Ferredoxin-dependent glutamate synthase 2, chloroplastic
- Glutamate synthase 1, chloroplastic
- Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial
- Glutamate dehydrogenase 1
- Glutamate dehydrogenase 2
- Carbamoyl phosphate synthase arginine-specific large chain, chloroplastic
- Carbamoyl phosphate synthase small chain, chloroplastic
- Probable glutamate dehydrogenase 3
- Glutamate--glyoxylate aminotransferase 1
Sequence:
MSLLADLVNLDISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIFANPDVIAEVPWYGIEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWNP
Protein: Uncharacterized protein (Q57XG1)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
Sequence:
MGCGGSAPANKDRHVGADPPKPSEHSEHSKPSDPSDPADATRIHKICTLPLHDKDKPVAAAAIRVTDPKCISDILPPEFLEGKKVHNEFCAITLSFDDGKPEDEGLFEKLKELEGTSIELKPTHIVMNEKVAAIGVCNNDEFPCQDAHPHILVATAPDATQEDIDDVTKKGKIEIFCARKLPDLPPDITIPGEFRFMHW
Protein: Regulatory protein MIG2 (P53035)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Involved in glucose repression of the SUC2 gene.
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Carbon catabolite-derepressing protein kinase
- Regulatory protein MIG1
- Glucose transport transcription regulator RGT1
- Zinc finger chaperone ZPR1
- CDP-diacylglycerol--inositol 3-phosphatidyltransferase
- Low-affinity glucose transporter HXT1
- High glucose sensor RGT2
- Low glucose sensor SNF3
- Regulatory protein CAT8
Sequence:
MPKKQTNFPVDNENRPFRCDTCHRGFHRLEHKKRHLRTHTGEKPHHCAFPGCGKSFSRSDELKRHMRTHTGQSQRRLKKASVQKQEFLTVSGIPTIASGVMIHQPIPQVLPANMAINVQAVNGGNIIHAPNAVHPMVIPIMAQPAPIHASAASFQPATSPMPISTYTPVPSQSFTSFQSSIGSIQSNSDVSSIFSNMNVRVNTPRSVPNSPNDGYLHQQHIPQQYQHQTASPSVAKQQKTFAHSLASALSTLQKRTPVSAPSTTIESPSSPSDSSHTSASSSAISLPFSNAPSQLAVAKELESVYLDSNRYTTKTRRERAKFEIPEEQEEDTNNSSSGSNEEEHESLDHESSKSRKKLSGVKLPPVRNLLKQIDVFNGPKRV
Protein: Methyltransferase type 11 domain-containing protein (O06593)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Interaction partners:
Sequence:
MARTFEDLVAEAASASVGGWGFSWLDGRATEERPSWGYQRQLSQRLANATAALDLETGGGEVLAGAGNFPPTMVATEAWPPNAAMATRRLHPLGAVVVITGDKPPLPFADAAFDLVTSRHPSTRWWTEIARVLRAGGSYFAQHVGPATLWDLREHFLGPREHNGADQYAQVVRTCITDAGLEIVDLQMERLRVEFFDVGAVIYFLRKVIWFLPDFTVEGYHDRLRALHERIQAEGPFVTYSTRALIEARKPS
Protein: Protein FAR-RED ELONGATED HYPOCOTYL 3 (Q9LIE5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression.
Subcellular location: Nucleus {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:18722184}.
Interaction partners:
- Transcription factor HY5
- Phytochrome A
- Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE
- Protein CCA1
- Zinc finger BED domain-containing protein DAYSLEEPER
- Two-component response regulator-like APRR1
- Protein LHY
- F10A16.15 protein
- Delta-aminolevulinic acid dehydratase 1, chloroplastic
- Histone acetyltransferase subunit NuA4-domain protein
Sequence:
MDIDLRLHSGDLCKGDDEDRGLDNVLHNEEDMDIGKIEDVSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLPAQAVSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEKGRTLSVETGDFKILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESAATYSWLMETWLRAIGGQAPKVLITELDVVMNSIVPEIFPNTRHCLFLWHVLMKVSENLGQVVKQHDNFMPKFEKCIYKSGKDEDFARKWYKNLARFGLKDDQWMISLYEDRKKWAPTYMTDVLLAGMSTSQRADSINAFFDKYMHKKTSVQEFVKVYDTVLQDRCEEEAKADSEMWNKQPAMKSPSPFEKSVSEVYTPAVFKKFQIEVLGAIACSPREENRDATCSTFRVQDFENNQDFMVTWNQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRWTKDAKSRHFSGEPQQLQTRLLRYNDLCERALKLNEEASLSQESYNIAFLAIEGAIGNCAGINTSGRSLPDVVTSPTQGLISVEEDNHSRSAGKTSKKKNPTKKRKVNPEQDVMPVAAPESLQQMDKLSPRTVGIESYYGTQQSVQGMVQLNLMGPTRDNFYGNQQTMQGLRQLNSIAPSYDSYYGPQQGIHGQGVDFFRPANFSYDIRDDPNVRTTQLHEDASRHS
Protein: Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (EC 1.2.4.1) (O64688)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity).
Subcellular location: Plastid, chloroplast {ECO:0000305}.
Interaction partners:
- Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial
- Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
- Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
- 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial
- Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic
- 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial
- Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic
- Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial
- Dihydrolipoyl dehydrogenase 2, chloroplastic
- Dihydrolipoyl dehydrogenase 1, chloroplastic
Sequence:
MSAILQGAGAATALSPFNSIDSNKLVAPSRSSLSVRSKRYIVAGSDSKSFGSSLVARRSEPLIPNAVTTKADTAASSTSSKPGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKFGDLRVLDTPICENAFTGMGIGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKESIPDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ
Protein: Fructose-bisphosphate aldolase class 1 (EC 4.1.2.13) (Fructose-bisphosphate aldolase class I) (FBP aldolase) (B0R3Y0)
Organism: Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)
Function: Has aldolase activity with fructose 1,6-bisphosphate. May play a role in the biosynthesis of aromatic amino acids (AroAA).
Interaction partners:
Sequence:
MRPFEDSPISRDGKVLILAYDHGLEHGPVDFEAVPATKDPEAVWDVATHDAVSAMAAQKGIAEAYYPSYSDDVNLLAKLNGTSNLWMGEPDSAVNWTVDYAADVGADAVGFTLYGGSNSEVEMAEEFRDAQEAARDHDLPVVMWSYPRGQGLKNDKNPDTIAYAARQALELGADIAKVKYPGSTDAMSHAVDMAGPTNVVMSGGSKTSDRDFLESVKGAIDAGASGLAVGRNVWQREHPAAFLDGLEAVVYEEASVDEALGRI
Protein: Mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog) (Q75MR5)
Organism: Homo sapiens (Human)
Subcellular location: Mitochondrion outer membrane {ECO:0000256|ARBA:ARBA00004572}; Single-pass membrane protein {ECO:0000256|ARBA:ARBA00004572}.
Interaction partners:
Sequence:
MVKLSKEAKQRLQQLFKGSQFAIRWGFIPLVIYLGFKRGADPGMPEPTVLSLLWG
Protein: Dynamin-binding protein (Scaffold protein Tuba) (Q6TXD4)
Organism: Mus musculus (Mouse)
Function: Plays a critical role as a guanine nucleotide exchange factor (GEF) for CDC42 in several intracellular processes associated with the actin and microtubule cytoskeleton. Regulates the structure of apical junctions in epithelial cells (By similarity). Participates in the normal lumenogenesis of epithelial cell cysts by regulating spindle orientation (By similarity). Plays a role in ciliogenesis (By similarity). May play a role in membrane trafficking between the cell surface and the Golgi.
Subcellular location: Cytoplasm {ECO:0000269|PubMed:14506234}. Golgi apparatus, Golgi stack {ECO:0000269|PubMed:14506234}. Cytoplasm, cytoskeleton {ECO:0000269|PubMed:14506234}. Synapse {ECO:0000250|UniProtKB:M0R4F8}. Cell junction {ECO:0000250|UniProtKB:Q6XZF7}. Note=Localizes to the apical junction, colocalizes with TJP1. {ECO:0000250|UniProtKB:Q6XZF7}.
Interaction partners:
- Actin nucleation-promoting factor WASL
- Myc box-dependent-interacting protein 1
- Bridging integrator 3
Sequence:
MEPGSMVRAIFDFCPSVSEELPLFVGDVIEVLAVVDEFWLLGKKEDVTGQFPSSFVEIVTIPSLKEGERLFVCICEFVSRELNSLSLHRGDLVILDDSAPTAGWLQGRSCWGAWGFFPSSCVQELCLSSRSRRWHAQSALLQAPEYSLGQARALMGLSAQLDEELDFREGDLITIIGVPEPGWFEGELEGRRGIFPEGFVELLGPLRTVDESVNSRSGDDSAVNGEVDVPPEEAESGGDEDDQQSGTYGIALYRFQALETNELDFEVGDRIQILGTLEDGWLEGCLKGKTGVFPHRFVKLCPSNRTEETTAQPQESSFPKDSESSVGKSGDSVVEEARQEPWECEEERPDYDLPGQASVPQDHVAPEWTGDTISGQDKDASGSSPDVDLERPLAKDLSTPDPSEEVNGVSSQPQVPIHPKVQKSQHYLTAGGSHQTSDPFSELVPLEARTRDYSSLPPRRTYAQGWSFQKPASHLQRASSLTASRLDRPSHFCHPAMASYAQKHQTSTENTASLHDPPERPERRPGLQDRGPATDITTASQGDSLDLDSKLTQQLIEFEKSLSGPSTEPETIVRRFSIMDFYSEKDIVRGSSNSLPSQAFPERRKTLRPPPPRPRTPTPISSHLLVDQSPKPVPTLVVRPSRPAPLPPPAQQRMNTASPKPTSCAHPGWEAPEKEDSEHMEKSPAQTFPCPSMLARIRDVEQDLDTCTRAQEELNLLLEEKQDDPSRAETLETLRSYESTIQSLTLELQQLRDMTLLSSQSSSLAAPFGSVSTENPEQRMLEKRAKVVAELLQTERDYIRDLEMCIERVMVPLQQAQVPNVDFEGLFGNMQTVIKVSKQLLAALEISDAVGMSSCDCLVPGPVFLDHRDELEGTYRVYCQNHDEAISLLEMYEKDEKTQKHLQDYLADLKGCTNYINLGSFLIKPVQRIMRYPLLLMELLNSTPESHPDKVPLTNAVLAVKEINVNINEYKRRKDLVLKYRKGDEDSLMEKISKLNIHSIIKKSSRVSSHLKHLTGFAPQLKDEVFEETEKNFRMQERLIKSFIRDLSLYLQHIRESACVKVVAAMSIWDLCMERGHHDLEQFEKVHRYISDQLFTRFKERTERLVINPLNQLLNMFTGPYKLVQKRFDKLLDFYNCTERAEKLKDKKTLEELQSARNNYEALNSQLLDELPKFQQYAQSLFTNCIHGYAEAHCDFVQQALEQLQPLLSLLKATDREGNLIAIFLEEHSRVLQQLQVFTFFPESLPAPRKPFERKTTDRQSSRKTLLGMPSYMLQSEELRSSLLARYPPEKLFHVQRNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLVDNGVTKGFVYSSFLKPYNPRCSHSDASVASHSSTESEHSGSSPGCHRQNSHSALTFNSNNMTVSFTSGLALTQPQDASPLKDCAHETLAVSWNTGHPETGPSTCSSDPGFSCQRRLGNPADGARDISQPASTLRGCQRSSPHSEVVGYSVPGRNDQGSDSIKGSARVCQAPEDRDRGVGSSETEGNQVYFAIYTFKARNPNELSVLANQRLRIHEFKDVTGNTEWWLAEVNGRKGYVPSNYIRKTEYT
Protein: PBX homeobox 1 (F8WA05)
Organism: Homo sapiens (Human)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Interaction partners:
Sequence:
MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKTVLSIRGAQEEEPTDPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGSDNSVEHSDYRAKLSQIRQIYHTELEKYEQ
Protein: Troponin C-akin-1 protein (EC 2.3.2.-) (Putative gamma-glutamylcyclotransferase) (Q9W0Y1)
Organism: Drosophila melanogaster (Fruit fly)
Function: Putative gamma-glutamylcyclotransferase.
Interaction partners:
- Anion exchange protein
Sequence:
MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKLPLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTREMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHRRTHKHPAQDDLTYEAQN
Protein: Zinc finger C2HC-type containing 1C (J3KMY6)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MAGLQRLASHLPVGVMLPHNTTEAPGPHSAKQDSYEQGDSSQQSLKGHLRNNFQKQLLSNKELILDKVYTHPKWNTQTKARSYSYPHCTGISQQDPESDSQGQGNGLFYSSGPQSWYPKANNQDFIPFTKKRVGVDRAFPLKPMVHRKSCSTGEAGTDGDHNVYPRPPEPREFSSRNFGVRNQGNFSVVGTVLAATQAEKAVANFDRTEWVQIRRLEAAGESLEEEIRRKQILLRGKLKKTEEELRRIQTQKEQAKENENGELQKIILPRSRVKGNKSNTMYKPIFSPEFEFEEEFSRDRREDETWGRSQQNSGPFQFSDYRIQRLKRERLVASNNKIRDPVSEPSVEKFSPPSETPVGALQGSARNSSLSMAPDSSGSSGSIEEPQLG
Protein: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (EC 4.1.99.12) (O60181)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
Interaction partners:
- 6,7-dimethyl-8-ribityllumazine synthase
- Riboflavin synthase
- Probable GTP cyclohydrolase-2
- Diaminohydroxyphosphoribosylamino-pyrimidine deaminase
- 2,5-diamino-6-ribosylamino-4
- Uncharacterized protein C162.06c
- WW domain-containing protein C2F3.14c
- Large ribosomal subunit protein uL5m
- Large ribosomal subunit protein mL60
- UPF0613 protein PB24D3.06c
Sequence:
MLASIEEAVNDFRDGKFLIVLDDETRENEGDLIIAGCKVTTEQMAFLVRHSSGYVCVPMTGERLDSLEIPMMVDNNEDRMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRARDGGVLERDGHTEAAVDLCKLAGLPPVGAICELVREEDGLMSRFDDCISFGKKWGIKVITIESLKSYIKGRM
Protein: Nibrin homolog (Nijmegen breakage syndrome 1 protein) (OsNbs1) (Q7XD82)
Organism: Oryza sativa subsp. japonica (Rice)
Function: Component of the MRE11-RAD50-NBN complex (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex may be involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, and cell cycle checkpoint control. Functions also in the very early stages of meiosis.
Subcellular location: Nucleus {ECO:0000250|UniProtKB:O60934}. Chromosome {ECO:0000250|UniProtKB:O60934}. Note=Localizes to DNA double-strand breaks (DSBs). {ECO:0000250|UniProtKB:O60934}.
Interaction partners:
- Double-strand break repair protein MRE11
- Double-strand break repair protein MRE11
- Os02g0497500 protein
- Os05g0463400 protein
- non-specific serine/threonine protein kinase
- Chlorophyll a-b binding protein
- ATP-dependent DNA helicase
- Os01g0660500 protein
- Os01g0637050 protein
- Os01g0637000 protein
Sequence:
MVWALTPVDTVRGAQRCYIFAAGTYKVGRKDCDVIVQTDTSISRVHAEIVVEKMVAWDPQSGAPANPSYVRVVDRSKYGTFFNKVQGTQGSRLHKDEDAMLADGDTVTFGTGNATFRLSFVPIVVFFHGKKSGRISPCLQAVMTSIGAYATRKWSDECTHVLVDESCSLTPELLDAVLAKKQIVLGDWFKVMAEKNIHTEMPSSTQYIPKLTLDGMEIQVVEIKLIESCLAGYTFILGSSEKYKFGDKLHALLESTGAKYLHVDEFCANSQDSGAGENDKDILLVPAKSPLEFSKIRGLFPLSKITDVKLFAAILSGHLEATAIEPPAYIVASSNSTDETIVVDSDVEIDTATSDHTVAASKSEHHIEHISDDKKEVVAISEEDAVNLVEAKTSINLHSDQEKDEIVKPMEEDVKVIEKTATMRGFKVEGEDIPVMTKVPKDETLDSRDETCHVIYTQNLVVKSILQSARAESIETGGINFKRFRKRGAVSGNSFKDLIPYSREPYRESDYERGTVTDFMREEKKRRQMEAIAEDLFNNAKPKKKAAAGSSIHTMLTGRR
Protein: ELAV-like protein (A0A0R4IC33)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
Sequence:
MVTIISTMETQVSNGPSGTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRLDNLLNASYGVKRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHKA
Protein: RT10714p (Q9VK16)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
- ADP-ribosylation factor-like protein 2
Sequence:
MDNYNHKKFTGALKRKRSMDADSDDDVVFIMEQPGQRTPEQPQPKRRFFRPWMDESPEEEQPQPPRKIVATSTPPPQQVDGTYHANMVRNHHKRRQRSPQEQLRRDRNTLASLRHRRSQQQQQQLIEQQYLTSRIQHEANLQQQIRLSLYYVRFLQQAMASTEPLPPTQPRHMMPRQQTTTQHP
Protein: Probable ATP-dependent RNA helicase DDX41 (EC 3.6.4.13) (DEAD box protein 41) (Q91VN6)
Organism: Mus musculus (Mouse)
Function: Probable ATP-dependent RNA helicase. Is required during post-transcriptional gene expression. May be involved in pre-mRNA splicing.
Subcellular location: Nucleus {ECO:0000250|UniProtKB:Q9UJV9}. Cytoplasm {ECO:0000250|UniProtKB:Q9UJV9}. Note=Predominantly present in the nucleus and traffics to the cytoplasm, specifically in the perinuclear region, after DNA stimulation. {ECO:0000250|UniProtKB:Q9UJV9}.
Interaction partners:
- E3 ubiquitin-protein ligase TRIM21
- Serine/threonine-protein kinase TBK1
- Cyclic GMP-AMP synthase
- Interferon-activable protein 204
- Stimulator of interferon genes protein
- Pre-mRNA-processing factor 17
- Spliceosome RNA helicase Ddx39b
- Interferon regulatory factor 3
- Serine/arginine repetitive matrix protein 1
- THO complex subunit 4
Sequence:
MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF
Protein: Oligogalacturonate lyase (EC 4.2.2.6) (P21258)
Organism: Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))
Function: Involved in degradation of pectin, which causes soft-rod disease in plants.
Subcellular location: Periplasm {ECO:0000305}.
Interaction partners:
- Exopolygalacturonate lyase PelX
- Pectate disaccharide-lyase
- Pectate lyase A
- Pectate lyase E
- Pectate lyase D
- Pectate lyase C
- Pectate lyase B
- 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
- Outer membrane protein A
- Exo-poly-alpha-D-galacturonosidase
Sequence:
MAKGKKLSFSFHTYQDSVTGTEVVRLTPPDVICHRNYFYQKCFSNDGSKLLFGGAFDGPWNYYLLDLKTQQATQLTEGTGDNTFGGFLSPDDDALYYVKNVRNLMRVDLNTLEETNIYQVPDDWVGYGTWVANSDCTKMVGIEIKKEDWKPLTDWKKFQEFYFTNPCCRLIRIDLKTGEATTILKENQWLGHPIYRPGDDNTVAFCHEGPHDLVDARMWFINEDGSNMRKVKEHAPGESCTHEFWVPNGSALAYVSYLKGSTNRFICSVDPVTLENRQLTEMPPCSHLMSNYDGTLMVGDGCNAPVDVKDDGGYKIENDPFLYVFNMKTGKHFQVAQHNTSWEVLEGDRQVTHPHPSFTPDDKHILFTSDVDGKPALYLAKVPDSVWQ
Protein: Low-affinity inorganic phosphate transporter PitB (P43676)
Organism: Escherichia coli (strain K12)
Function: Low-affinity inorganic phosphate transporter.
Subcellular location: Cell inner membrane {ECO:0000269|PubMed:11489853, ECO:0000269|PubMed:15919996}; Multi-pass membrane protein {ECO:0000255}.
Interaction partners:
- Phosphate-specific transport system accessory protein PhoU
- Hexose-6-phosphate:phosphate antiporter
- Phosphate-binding protein PstS
- Phosphate transport system permease protein PstA
- Phosphate import ATP-binding protein PstB
- Phosphate regulon sensor protein PhoR
- Glycerol-3-phosphate transporter
- Membrane sensor protein UhpC
- Phosphate regulon transcriptional regulatory protein PhoB
Sequence:
MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVAAVIYTRAMQPQLAVVMAAFFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSTHGLAMVFSMLLAAIIWNLGTWFFGLPASSSHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLIVSPIVGLVIAGGLIFLLRRYWSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSAAGVAFSHGANDGQKGIGLVMLVLVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQHPELPQKLIAMEPPLPAASTDGTQVTEFHCHPANTFDAIARVKTMLPGNMESYEPLSVSQRSQLRRIMLCISDTSAKLAKLPGVSKEDQNLLKKLRSDMLSTIEYAPVWIIMAVALALGIGTMIGWRRVAMTIGEKIGKRGMTYAQGMAAQMTAAVSIGLASYIGMPVSTTHVLSSAVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIFLSGGLYWIALQLI