wanglab/gogpt-training-data huggingface dataset:
Protein: Scavenger receptor class A member 3 (Cellular stress response gene protein) (Q6AZY7)
Organism: Homo sapiens (Human)
Function: Seems to protect cells by scavenging oxidative molecules or harmful products of oxidation.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:9580669}; Single-pass type II membrane protein {ECO:0000269|PubMed:9580669}. Golgi apparatus membrane {ECO:0000269|PubMed:9580669}; Single-pass type II membrane protein {ECO:0000269|PubMed:9580669}. Note=Endoplasmic reticulum and/or Golgi.
Interaction partners:
- Cleavage and polyadenylation specificity factor subunit 3
- Cleavage and polyadenylation specificity factor subunit 2
Sequence:
MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYLFLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCHEAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQVNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRKTDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLLSARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPPGSQSFY
Protein: Transcription termination/antitermination protein NusA (O51740)
Organism: Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) (Borrelia burgdorferi)
Function: Participates in both transcription termination and antitermination.
Subcellular location: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00945}.
Interaction partners:
- DNA-directed RNA polymerase subunit alpha
- DNA-directed RNA polymerase subunit beta'
- Large ribosomal subunit protein uL11
- Translation initiation factor IF-2
- Small ribosomal subunit protein uS7
- Small ribosomal subunit protein uS10
- Transcription termination/antitermination protein NusG
- tRNA
- Small ribosomal subunit protein uS4
- Small ribosomal subunit protein uS2
Sequence:
MIKGTGHMIVNIANDRGMSIDSIRKTIKESVLIAYKKYFGSNENAFIKFDDDTGDLSVYAKKKIVKEVKDSLLEILEKDISKENIVEGDYAYIEINPKVFDRLSIQVAKQRTKNDLQGIEDNEILSEFKSKLNKVVIGYVQQNRNGDLYVNLGNTDGIIPKKYQSPREVYNLNDKIRVLVYNVKKGKNGIEVILSRTHPKFIEELLALEIPEIEEGIIKIHKIVRDPGYRIKVAVYSEKEEIDPVGPCIGQKGVRIQSIIKELEGEKIDIIPYSKDIKEFIKDSLTPSKIEHVYILDEDLHKALVVVSDDQLSLAIGKMGQNVRLANRLLDWAIDVKTSSQFAEMKANSEFKQETLEMFDKVMQDVVEEEQFEEISKISDLKLLDPSVISNLSKEGFDDINNFLQADEGVLFNLGVSYEKQEEINKILKEGMIIIANDNDESMEKVEEDEELLCPECGVVINENMTSCPGCKIGLSFEFEEE
Protein: tRNA (guanosine(34)-2'-O)-methyltransferase (EC 2.1.1.205) (2'-O-ribose RNA methyltransferase TRM7 homolog 2) (Q9VDD9)
Organism: Drosophila melanogaster (Fruit fly)
Function: Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
Subcellular location: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_03162}.
Interaction partners:
- tRNA
- tRNA
- Pescadillo homolog
- Ribosome assembly factor mrt4
- Nucleolar GTP-binding protein 1
- Ribosome biogenesis protein BOP1 homolog
- Probable ribosome biogenesis protein RLP24
- Nucleolar complex protein 2
- Ribosome biogenesis protein NSA2 homolog
- Probable rRNA-processing protein EBP2 homolog
Sequence:
MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLYEPLPPEEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSIEAFVVAREFCLPDGYKPCNLTTEWHDQPESWVGRKKESPPVVQVPFVAYKGELDSDRTYDLGENYVYKEPVQQPLTAAYQDILQKTSQVNIKYEGIRVIHDEEMLKKWLENDENKSEKLGACVT
Protein: Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial (4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase) (EC 4.1.1.-) (Coenzyme Q biosynthesis protein 4 homolog) (Q8BGB8)
Organism: Mus musculus (Mouse)
Function: Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides.
Subcellular location: Mitochondrion inner membrane {ECO:0000255|HAMAP-Rule:MF_03111}; Peripheral membrane protein {ECO:0000255|HAMAP-Rule:MF_03111}; Matrix side {ECO:0000255|HAMAP-Rule:MF_03111}.
Interaction partners:
- Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial
- Ubiquinone biosynthesis protein COQ9
- 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
- Ubiquinone biosynthesis O-methyltransferase, mitochondrial
- NADPH-dependent 3-demethoxyubiquinone 3-hydroxylase, mitochondrial
- 4-hydroxybenzoate polyprenyltransferase, mitochondrial
- All trans-polyprenyl-diphosphate synthase PDSS1
- Atypical kinase COQ8B, mitochondrial
- Atypical kinase COQ8A, mitochondrial
- All trans-polyprenyl-diphosphate synthase PDSS2
Sequence:
MATLLLLRSLRLHRSLRPRTRPAVDVPLRAGSHGARLLYPDHIPTTPLQKMLLAAGAAGMALYNPYRHDMVAVLGETTGCHTLKFLRDQMKKDPEGAQILQERPRISLSTLDLSKLQSLPEGSLGREYLRFLDVNKVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNMLGEVVVKWFEAVQTGLPMCILGALFGPIRLRTQSLQVLFSELIPWAIQNGRRAPCVLNIYYEQRWEQPLTALREELGISPPPKHIQGLA
Protein: LIM domain binding 1 (A0A0G2JVQ2)
Organism: Rattus norvegicus (Rat)
Interaction partners:
- Rhombotin-2
- TAL bHLH transcription factor 1, erythroid differentiation factor
- Erythroid transcription factor
- Endothelial transcription factor GATA-2
- Single-stranded DNA binding protein 2
- Transcription factor E2-alpha
- LIM/homeobox protein Lhx3
- LIM/homeobox protein Lhx2
- Insulin gene enhancer protein ISL-1
- LIM domain transcription factor LMO4
Sequence:
MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPARQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
Protein: Chemotaxis protein CheW (O25152)
Organism: Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Function: Plays an essential role in chemotaxis signal transduction system in order to colonize the host stomach.
Interaction partners:
- Sensor histidine kinase CheAY
- Methyl-accepting chemotaxis protein
- Methyl-accepting chemotaxis transducer
- Methyl-accepting chemotaxis protein
- Chemotaxis protein CheY1
- Hemolysin secretion protein
- Chemotaxis protein CheV3
- Chemotaxis protein CheV2
- Chemotaxis protein CheV1
- Flagellar motor switch protein FliN
Sequence:
MSNQLKDLFERQKEASAGSKQEDNEEVLQFIGFIIGDEEYAIPILNILEIVKPIGYTRVPETPNYVLGVFNLRGNVFPLISLRLKFGLKAEKQNKDTRYLVVRHNDQIAGFFIDRLTEAIRIKQTDIDPVPETLSDNNNLTYGIGKQNDRLVTILRVEEILKKDF
Protein: Cyritestin (Q62287)
Organism: Mus musculus (Mouse)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004167}; Single-pass membrane protein {ECO:0000256|ARBA:ARBA00004167}.
Interaction partners:
Sequence:
MLPLFLVLSYLGQVIAAGKDVETPLLQITVPEKIDTNIQDAKEAETQVTYVVTIEGKAYTLQLEKQSFLHPLFGTYLRDKLGTLQPYFSLVKTHCFYQGHAAEIPVSTVTLSTCSGLRGLLQLENITYGIEPLESSATFEHILYEIKNNKIDYSPLKENFANSEQESQSYRILVKPEKGSNSTLTKRILRIKIIMDKAMFDHMGSEVGVATQKVVHIFGLINTMFSQLKMTVMLNSLEIWSEQDKIETNGDADEVLQRFLLWKSKEISQKAQDITYLLLYKDHPDYVGATYHGMACNPNFTAGIALHPKTLAVEGFAIVLSQLLGINLGLAYDDVYNCFCPGSTCIMNPSAIRSQGIKVFSSCSVDEFKQLASQPELDCLRNTSETEFVVQPQGGSYCGNHLLEVPEQCDCGPPETCTHKKCCNPKDCTLIDAAQCGTGPCCDKRTCTIAERGRLCRKSKDQCDFPEFCNGETEGCAPDTKAADLEPCNNETAYCFGGVCRDPDRQCTDLFGKYAKGPNYVCAQEVNLQNDKFGNCHGRCNYSAIFCGKAVCYWNFAEVIQTEKYDVQYTYLGGQVCVSAHLRSQTGTRDDTYVHDGTVCGSGQVCFRGDCLRVHVLRGTRECEADDKCQGHGICNNLNNCQCESGFAPPECDMTPSSPGGSMDDGFWLPFDKSTPLIFKRHGLKYKKVLLISFYILLPFLVVLAFMAVKRMIGKRLAKQNISKALEHKEEAFNRGSMNPGVVSGGNTDQNLMTVPGSFNSYAYHGNTDQNFMTVPGSFNSYSYHGNTDQNFMTVPGSFNSYSYQDVPYYRSIPEDGNDSQQ
Protein: E3 ubiquitin-protein ligase RMA (EC 2.3.2.27) (Protein RING membrane-anchor) (RING-type E3 ubiquitin transferase RMA) (A0A384L3Q5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Endomembrane system {ECO:0000256|ARBA:ARBA00004308}. Endoplasmic reticulum membrane {ECO:0000256|RuleBase:RU369090}; Single-pass type IV membrane protein {ECO:0000256|RuleBase:RU369090}.
Interaction partners:
Sequence:
MGEELADTMNLDLNLGPGPESDLQPAPNETVNLADWTNDPPERSSEAVTRIRTRHRTRFRQLNLPIPVLSETHTMAIELNQLMGNSVNRAAMQTGEGSERGNEDLKMCENGDGALGDGVLDKKADVEKSSGSDGNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKGEVTSKTVTPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRFDRDSTPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNPNIAPDLEGESNTRFHPLLIRRQLQSHRVARISTFTSALSSAERLVDAYFRTHPLGRNHQEQNHHAPVVVDDRDSFSSIAAVINSESQVDTAVEIDSMALSTSSSRRRNENGSRVSDVDSADSRPPRRRRFT
Protein: Aquaporin-4 (AQP-4) (Mercurial-insensitive water channel) (MIWC) (WCH4) (P47863)
Organism: Rattus norvegicus (Rat)
Function: Forms a water-specific channel. Plays an important role in brain water homeostasis and in glymphatic solute transport. Required for a normal rate of water exchange across the blood brain interface. Required for normal levels of cerebrospinal fluid influx into the brain cortex and parenchyma along paravascular spaces that surround penetrating arteries, and for normal drainage of interstitial fluid along paravenous drainage pathways. Thereby, it is required for normal clearance of solutes from the brain interstitial fluid, including soluble beta-amyloid peptides derived from APP. Plays a redundant role in urinary water homeostasis and urinary concentrating ability (By similarity).
Subcellular location: Cell membrane {ECO:0000269|PubMed:16325200, ECO:0000269|PubMed:18179769, ECO:0000269|PubMed:19800950, ECO:0000269|PubMed:29055082, ECO:0000269|PubMed:7509789, ECO:0000269|PubMed:7528931}; Multi-pass membrane protein {ECO:0000269|PubMed:16325200, ECO:0000269|PubMed:19406128}. Basolateral cell membrane {ECO:0000250|UniProtKB:P55088}; Multi-pass membrane protein {ECO:0000269|PubMed:16325200, ECO:0000269|PubMed:19406128}. Endosome membrane {ECO:0000305|PubMed:19800950}. Cell membrane, sarcolemma {ECO:0000269|PubMed:29055082}; Multi-pass membrane protein {ECO:0000269|PubMed:16325200, ECO:0000269|PubMed:19406128}. Cell projection {ECO:0000269|PubMed:29055082}. Note=Activation of the vasopressin receptor AVPR1A triggers AQP4 phosphorylation at Ser-180 and promotes its internalization from the cell membrane (PubMed:19800950). Detected on brain astrocyte processes and astrocyte endfeet close to capillaries (PubMed:29055082). {ECO:0000269|PubMed:19800950, ECO:0000269|PubMed:29055082}.
Interaction partners:
- ATP-sensitive inward rectifier potassium channel 10
- Transient receptor potential cation channel subfamily V member 4
- Caveolin-1
- Excitatory amino acid transporter 2
- Aquaporin-11
- Aquaporin
- Dystrophin
- Glial fibrillary acidic protein
- Myelin basic protein
- Claudin-5
Sequence:
MSDGAAARRWGKCGPPCSRESIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV
Protein: Sm-like protein LSM3A (AtLSM3A) (U6 snRNA-associated Sm-like protein LSM3A) (Q9LMN4)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression.
Subcellular location: Cytoplasm {ECO:0000269|PubMed:23221597}. Nucleus {ECO:0000269|PubMed:23221597}.
Interaction partners:
- Sm-like protein LSM4
- Sm-like protein LSM2
- Sm-like protein LSM5
- Sm-like protein LSM8
- Sm-like protein LSM6A
- Sm-like protein LSM7
- Sm-like protein LSM36B
- Sm-like protein LSM1A
- Small nuclear ribonucleoprotein Sm D2
- Sm-like protein LSM1B
Sequence:
MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT
Protein: Alpha-1D adrenergic receptor (Alpha-1A adrenergic receptor) (Alpha-1D adrenoreceptor) (Alpha-1D adrenoceptor) (P97714)
Organism: Mus musculus (Mouse)
Function: This alpha-adrenergic receptor mediates its effect through the influx of extracellular calcium.
Subcellular location: Cell membrane; Multi-pass membrane protein.
Interaction partners:
- Guanine nucleotide-binding protein G
- Guanine nucleotide-binding protein subunit alpha-12
- Guanine nucleotide-binding protein subunit alpha-13
- Alpha-1A adrenergic receptor
- Alpha-1B adrenergic receptor
- Guanine nucleotide-binding protein subunit alpha-11
- Voltage-dependent P/Q-type calcium channel subunit alpha-1A
- Beta-2-syntrophin
- Beta-1-syntrophin
- Guanine nucleotide-binding protein subunit alpha-14
Sequence:
MTFRDILSVTFEGPRASSSTGGSGAGGGAGTVGPEGPAVGGVPGATGGSAVVGTGSGEDNQSSTAEAGAAASGEVNGSAAVGGLVVSAQGVGVGVFLAAFILTAVAGNLLVILSVACNRHLQTVTNYFIVNLAVADLLLSAAVLPFSATMEVLGFWPFGRTFCDVWAAVDVLCCTASILSLCTISVDRYVGVRHSLKYPAIMTERKAAAILALLWAVALVVSVGPLLGWKEPVPPDERFCGITEEVGYAIFSSVCSFYLPMAVIVVMYCRVYVVARSTTRSLEAGIKREPGKASEVVLRIHCRGAATSAKGNPGTQSSKGHTLRSSLSVRLLKFSREKKAAKTLAIVVGVFVLCWFPFFFVLPLGSLFPQLKPSEGVFKVIFWLGYFNSCVNPLIYPCSSREFKRAFLRLLRCQCRRRRRRLWPSLRPPLASLDRRPALRLCPQPAHRTPRGSPSPHCTPRPGLRRHAGGAGFGLRPSKASLRLREWRLLGPLQRPTTQLRAKVSSLSHKFRSGGARRAETACALRSEVEAVSLNVPQDGAEAVICQAYEPGDLSNLRETDI
Protein: Serine/threonine-protein kinase dkf-1 (EC 2.7.11.13) (Q9XUJ7)
Organism: Caenorhabditis elegans
Function: Converts transient diacylglycerol (DAG) signals into prolonged physiological effects, independently of PKC. Role in the regulation of growth and neuromuscular control of movement. Involved in immune response to S.aureus bacterium by activating transcription factor hlh-30 downstream of phospholipase plc-1.
Subcellular location: Cytoplasm {ECO:0000269|PubMed:16613841, ECO:0000269|PubMed:16613842}. Membrane {ECO:0000269|PubMed:16613841, ECO:0000269|PubMed:16613842}. Note=Translocation to the cell membrane is required for kinase activation. On activation, the protein may migrate back to the cytoplasm. {ECO:0000269|PubMed:16613841, ECO:0000269|PubMed:16613842}.
Interaction partners:
- Serine/threonine-protein kinase dkf-2
Sequence:
MDGSQGSTDYGDHVVLRYGGTREMVPLIRHEQMLDMLMERARQIVQGFGNLDTRNMYLFRHEYNSPTLLYPITSASQITSGSILEIILVDRTEAAVIPHVVEPESYMRPTFCDFCGEMLTGLMRQGVKCKNCNGNFHKRCSNAARNNCGAPGAPGAQPSRPPILPPIPTTPTGFPVAALSTPTGLPHTLIEHSYRQFTVCKVCDHLLVGLVKQGLKCRDCGVNVHRKCAMELASNCVLSENAISRVNFTDPEGPGSSSSDNIPLFRLPGQVGTRATEKKKLEGWMMHFILSDPERRLKHYWMMQSNAIHLYNEYSEGIGVNPNRVYRIIPLAEITSVVQNNGKSVLAKHPPHCFEIRTTTNTVFCVGEDYHAFSGGPPKKIPRSMSVRPSSNTTMWFQFIKESLQPPSRNEDNAEQALEFANLYQVLSDKTLGSGQFGTVYSAIQRHSGKEVAVKVISKERFSKKGSGAESMRAEVAILQQTCHPGIVCLEFMCETKDKIFVVMEKMNGDMLEMILSQELGRLNSRATKFLLVQILCALKYLHDQGIAHCDLKPENVLLSDMGSNFPQTKICDFGYARFIPESQFRKTVVGTPAYLPPEVLQRKGYNKSLDMWSVGVIIYVTLSGTFPFNEGEEISEQIQNASFMFPTEPWSEVEPLAVDLIQKLLKVEIEARMSIEQCLDHGWLKGEQLYRDLRDLEVRLNTPRYLTSPQDDILYGTLVNP
Protein: Threonine/homoserine exporter RhtA (P0AA67)
Organism: Escherichia coli (strain K12)
Function: Involved in the efflux of threonine and homoserine. Can also export other amino acids such as proline, serine, histidine and cysteine.
Subcellular location: Cell inner membrane {ECO:0000269|PubMed:12648727}; Multi-pass membrane protein {ECO:0000269|PubMed:12648727}.
Interaction partners:
- Threonine efflux protein
- DNA protection during starvation protein
- Homoserine/homoserine lactone efflux protein
Sequence:
MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVTALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAASMGSTLTVRKESKIKELDIN
Protein: HSPC090 (Q9P0E6)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
PKNKLEKFWRFPTVWKTDELHSLGILKTLLTWALRPAELAPLYGCWGLRTGIAVACAPHHASLNLHGLNQIRNVKKQSVYLMNLRKSGTLGHPGSVDETTYERLAEESLDSLAEFFEDLADKPYTLRTMMFPLGVVS
Protein: At1g77890 (DNA-directed RNA polymerase II protein) (Q147F2)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Beclin-1-like protein
- Serine/threonine-protein kinase VPS15
- Phosphatidylinositol 3-kinase VPS34
Sequence:
MEKSTKCAVCYKSFRPSICVDCVNRGLNEYKVKLDSLKSLREVSYFRLSGLLVTKEKAISQRCWKELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERYGIIESTNVALEESRVHQLENHYSDTIGNHYLVYIDLTSERLYKQALVMKQICKLFPLSRVTVEGQNKDGSSVQYDQICNALLPQGLNPLSVPPKELAASLGYMVQLLNLVVHKLSVPALHNLGFAGSCSRIWERDSYWNSYPSSPSNGYPLFVPIHDHYSFEEKSSWTGRDTTNFGVTSLKSDGSIEEDYHDLDLDVVSLSSASPHSVETFRNLQQGIAHLKQSVAHLTVYGYRSLSLEVPSGTSTFETFAKLLATLSSLKEVQSGLSLGLSSSNKQRHEPNKSVWNLNSSSSSTLLNSSHTQPTTWNSSYYNVPNRDPSYMVEFPDVKKDKNSIGEWNLVEYPHSSRQPNHPNKY
Protein: Ribose import permease protein RbsC (P0AGI1)
Organism: Escherichia coli (strain K12)
Function: Part of the ABC transporter complex RbsABC involved in ribose import. Probably responsible for the translocation of the substrate across the membrane.
Subcellular location: Cell inner membrane {ECO:0000269|PubMed:15919996, ECO:0000269|PubMed:9922273}; Multi-pass membrane protein {ECO:0000305|PubMed:9922273}.
Interaction partners:
- Ribose import ATP-binding protein RbsA
- Ribose import binding protein RbsB
- D-ribose pyranase
- D-allose-binding periplasmic protein
- Ribokinase
- Arabinose import ATP-binding protein AraG
- Galactose/methyl galactoside import ATP-binding protein MglA
- D-allose import ATP-binding protein AlsA
- Autoinducer 2 import ATP-binding protein LsrA
- Xylose import ATP-binding protein XylG
Sequence:
MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ
Protein: Pentatricopeptide repeat-containing protein At5g46580, chloroplastic (Q9LS25)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Plastid, chloroplast {ECO:0000305}.
Interaction partners:
- RNA-binding
- Pentatricopeptide repeat-containing protein At2g17033
- AT3G20230 protein
- RNA-binding protein CP33, chloroplastic
- Cytosolic sulfotransferase 1
- Small ribosomal subunit protein cS23y
- RNA polymerase sigma factor sigB
- Large ribosomal subunit protein uL3c
Sequence:
MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEPITTKTPSLSEQLKPLSATTLRQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFSQGLANSFALHLQQLSAPFRQSDRPGIFVATKEDLVSWLESKFPPLVTSQA
Protein: NXPE family member 2 (Protein FAM55B) (Q96DL1)
Organism: Homo sapiens (Human)
Subcellular location: Membrane {ECO:0000305}; Single-pass membrane protein {ECO:0000305}.
Interaction partners:
Sequence:
MVEKILIHRILTLFPNAIARKLLLMLTFILIFWIIYLASKDHTKFSFNLENHIILNQGNIFKKYSHSETPLCPAVSPKETELRIKDIMEKLDQQIPPRPFTHVNTTTSATHSTATILNPQDTYCRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFNNGTYLVSFTLFWEGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTECGLTLNTNAELCQYMDDRDQEAFYCVRPQHMPCEALTHMTTRTRNISYLSKEEWRLFHRSNIGVEMMKNFTPIEVIPCNKSENIKKNCQIGMKTPFPSGYTLKKMWITAFCKQIKFNETKNINDCLERKLIYLMGDSTLHQWIYYLQKAVKTLKYFDHHGAGIFKTHVLLDVERHILIQWKKHGHPFVTKKLFSVKDENYIPREIDQVAGDKNTAIVITLGQHFRPFPINIFIRRAINIQKAIERLFLRSPETKVILKTENTREIEQNAEMFSDFHGYIQNLIIRDIFVDLNVGIIDAWDMTIAYCTNNAHPPDYVIQNQIGMFLNYIC
Protein: Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12) (Q385Q4)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
- Proteasome regulatory non-ATP-ase subunit 10
- Proteasome regulatory non-ATP-ase subunit
- Proteasome subunit alpha type
- Probable 26S proteasome regulatory subunit rpn-6.2
- Proteasome regulatory non-ATPase subunit 8
- Proteasome regulatory non-ATP-ase subunit 5
- 26S proteasome regulatory subunit 4 homolog
- Proteasome regulatory non-ATP-ase subunit 9
- 26S proteasome regulatory non-ATPase subunit
- Proteasome subunit beta
Sequence:
MPSWCLIESDPAVFTELIQRFGAQGVAVEEIVQLEQEYLRVHTNVYGLILLFKWKARKEGAATDGVVVPDAPVFFVQQTVNNACATLSIVNILLNHKESIELGEVLGNFLSFTQDMNPYLRGTQVGECDALREAHNSFAPVELFSLDHSVPDAGDAYHFVSFVYKNSAIWELDGLQEGPILASDASDENYRDKLMEVVRKRIRDHSAEDTTGAGQGISFSLMAVVDDPLVLLERRIYEATLQEAPTHYLEEQLNQLTKQRAREKLENQRRRHNYVPMIVELLKALAEKGQLKGILDDALAKKSGQGAKQ
Protein: Acetone carboxylase gamma subunit (EC 6.4.1.6) (Q8RM02)
Organism: Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Function: Catalyzes the carboxylation of acetone to form acetoacetate. Has a reduced activity on butanone, and no activity on 2-pentatone, 3-pentatone, 2-hexanone, chloroacetone, pyruvate, phosphoenolpyruvate, acetaldehyde, propionaldehyde and propylene oxide.
Interaction partners:
- Acetone carboxylase beta subunit
- Acetone carboxylase alpha subunit
- Hydantoinase B/oxoprolinase
- Hydantoinase/oxoprolinase
- Hydantoinase/oxoprolinase
Sequence:
MAYTRSKIVDLVDGKIDPDTLHQMLSTPKDPERFVTYVEILQERMPWDDKIILPLGPKLFIVQQKVSKKWTVRCECGHDFCDWKDNWKLSARVHVRDTPQKMEEIYPRLMAPTPSWQVIREYFCPECGTLHDVEAPTPWYPVIHDFSPDIEGFYQEWLGLPVPERADA
Protein: phosphatidate phosphatase (EC 3.1.3.4) (A0A8I5ZPU6)
Organism: Rattus norvegicus (Rat)
Interaction partners:
Sequence:
MAEKDPVCSSKWEAPRDKSSLDSAWSWIPIMRDPGWIRNVWPSNINVQTMNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVVRQPNGSLQCSPFHVRFGKMGVLRSREKVVDIEINGESVDLHMKLGDNGEAFFVQETDNDQEVIPMYLATSPILSEGASRMESQLKRNSVDRIRGLDPTTAAQGLPPSDTPSTGSLGKKRRKRRRKAHLDNLKRDDNVNTSEDEDMFPIEMSSDEDTALMDGSRALPNDVPPFQDDIPKENLPSISTYPQSASYPNSDREWSPSPSPSGSRPSTPKSDSELVSKSADRLTPKNNLEMLWLWGELPQAAKSSSPHKMKDSSPLGGRKMADKIHFQTIHSESSDTFSDQSPTMARGLLIHQSKAQTEMQFVNEEDLEALGAAAPPLSVAEELKAPASSTAQTSSKSDSPSRKKDKRSRHLGADGVYLDDLTDMDPEVAALYFPKNGDPGGLPKQASDNGARSANQSPQSVGSSGIDSGVESTSDSLRDLPSIAISLCGGLSDHREITKDAFLEQAVSYQQFADNPAIIDDPNLVVKIGNKYYNWTTAAPLLLAMQAFQKPLPKATVESIMRDKMPKKGGRWWFSWRGRNATIKEESKPEQGLPGKGHNTGEQPAQLGLTTRIKHESSSSDEEHSATKPSSSSHLSLLSNVSYKKTLRLTSEQLKSLKLKNGPNDVVFSVTTQYQGTCRCEGTIYLWNWDDKVIISDIDGTITRSDTLGHILPTLGKDWTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRIFTVNPKGELVQEHAKTNISSYVRLCEVVDHVFPLLKRSHSCDFPCSDTFSNFTFWREPLPPFENQDVHSASA