wanglab/gogpt-training-data huggingface dataset:
Protein: Transcriptional regulator, MarR family (A9CJU2)
Organism: Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
Interaction partners:
- Organic hydroperoxide resistance protein
Sequence:
MDAEGNEKTMESLLRLDQQICFALYGAAHAFTRAYKPLLDPIGLTYPQYLVMMALWEKETSTVKALGEMLGLDSGTLSPLLKRLEHAGLITRKRGTVDERQVLVALTPKGADLKKEGVKIMAAIGGATGCGLEELAQLRDQVNALKEGLSRP
Protein: Seipin-3 (AtSEIPIN3) (Q8L615)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Involved in lipid metabolism and lipid droplet (LD) morphology, number, and size. Supports the formation of small-sized LDs and modulates triacylglycerol accumulation. Induces probably a reorganization of the endoplasmic reticulum into LD-forming domains.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:26362606}; Multi-pass membrane protein {ECO:0000255}. Note=Localized to the lipid droplet-forming sites. {ECO:0000269|PubMed:26362606}.
Interaction partners:
- P300/CBP acetyltransferase-related protein-like protein
- Gb|AAF19561.1
- Oleosin 18.5 kDa
- Glutamyl-tRNA
Sequence:
MESESESSSTHSSCDRFLDAEDEFFYDSFSNHYDCLNSSPPANLRRRRLPMDTDSSSSSSTSSLESCEKRSTVGENDELEVSLVDFETIEIDVDVTDSANSSIDSISEKGEDFEVIDSCTDTEKNMGENDSGRVDPFTVTTLNDERGEIYTGPEYTSTDWSLTSLVIRSIEFQVSLMITFIRFPPWLISKCLSFVFDPYRTMRRGRRYLVSWIVGLCDSGLKDDKPVLELVRRVTWGLFCAVYVGIMLFALLVSAFMISGFVITYLAHEPLVIKESLNFDYTKSSPEAYVPISSCAGVAFGLSGKESIETGKVKGLKDRTEITVSMTLPESEYNRNLGMFQVRVDFLSASGHVLASSRRPCMVKFSSEPIRLVQTLLKIAPLVTGYVSEIQTLNLKLKGLVEKDIIPTACLKIMIEQRAEFRPGAGIPEIYDASLFLESKLPFLKRIIWNWRKTLFVWISMSLFIMELLFALVFFRPLIIPRTGQRTQQRDGTHSINNNLYLDGQAGSR
Protein: Defensin-like protein 195 (ATTp) (Trypsin inhibitor ATTI-1) (diDi 4T-1) (Q42328)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Secreted {ECO:0000250}.
Interaction partners:
- Protein CYSTEINE-RICH TRANSMEMBRANE MODULE 1
- Marker for oxidative stress response protein
- Non-specific lipid-transfer protein 4
- TolB protein-like protein
- PLC-like phosphodiesterases superfamily protein
- Endochitinase CHI
- Kunitz trypsin inhibitor 4
Sequence:
MAKAIVSIFVVFFIFFLVISDVPEIEAQGNECLKEYGGDVGFGFCAPRIFPTICYTRCRENKGAKGGRCRWGQGSNVKCLCDFCDDTPQ
Protein: ELAV-type RNA binding protein variant A (Elav-type ribonucleoprotein) (RRM domain-containing protein) (G5EF03)
Organism: Caenorhabditis elegans
Interaction partners:
Sequence:
MSGAVLPAVLVVPKMESVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKSMITGSGAGSPKGGAASLLQNLNPALLQQLGGGQNYQAVASLLSLINGQQGQQQQHQQQQNVLGILGTVLSALGKLTEGGDDASAKSSSEKPRHQALMTSPAPTATSSTSSSASHHHQQHQQQLSQQQQQQQHPQQQGLGNPLLGNPAMAAQNQFDAITMAQIAHQQQMLALQGFAVQQGAPSQQQQGLAGGMAGAKTTSPVAASLANHQQIALTPFAGGAAALDHFQAMQQYALLANLQATGGVGVQATTSAAQMVGNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNPYNR
Protein: PDGF- and VEGF-related factor 3, isoform A (Q9VM42)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MQLNTLRLALIFLSFVRLEAQANVQNNGWQKVLPDDFRRERDKSSTRTRRNPQEELRLRHEQHHLRLQQHQMAWELDLQRQLQQHLQEQQSEQSEQQSRPVRHHQHKSHTKELAKKPIRRAPSFGDDKAKMVQKRRLHYNEYDNEDLELHTIETGDQGTFTPRQWQQIEIAHRRQKEQHQLQLLAQRQQQRQLLTTTTATATAMAMATTSKATEPNDAKSEDNDVSAAKTLEDNDGHDVENIYARNYVAAKVGQKKEDQLGTPEAVIKARRLHAQKQKSERALAHAHMNQVLKEATCRIPQKRCQLVQQDPSKIYTPHCTILHRCSEDSGCCPSRSQICAAKSTHNVELHFFVKSSKHRSVIEKRTFVNHTECHCIERSTYNEETAMAHYGQSVVRATILSCTCPKSFEKILQDDGQCRCDCSSGNYDCDWLKRGNEHFAMNDRKCIQQGRCKPPTCEFGLYMDKHGRCPKQHEQPSYNAMS
Protein: Interferon alpha and beta receptor subunit 1 (A0A0G2JXD8)
Organism: Rattus norvegicus (Rat)
Interaction partners:
Sequence:
MWAQEKRCFNYTIRIWGRSFPVREIKPMYFPKKISKLLPETTYCLEVRAVHTSLQRHSNYSSARCINTTVANKIPVPENLEVDVQGDSYVLKWDHAFANMTFKAQWIPVYSKSSPGNHSDKWKPIPTCANVQTTHCVSPRETFHTGTFFLRVQASDGNNTSFWSEEKLIDSQKYTLLPPPVIAVTPTGDSLLVYVSCKDSKCNGLIYEVIFWENTSNTEKRQHPQSMIKEHPEFNVVNLRPLTVYCVQARVLSTGVWNKTSKFSDKLCKKTHPGNSSVTWIITGFGALLFSAMAFYAGRSLQKYLYYVFSPPLKPPCSIDEFFSELPSKSLLLLTAEEHTERCFVIENTGVVAGEENRAPEEELRKYSSQSSQDSGNYSNEEEESVGPESGQDMLSTAPSGSPWSLPCPAGTLEDGACFPGKEKHLQSPVLRTQPALHG
Protein: Uncharacterized protein (Q38B83)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
Sequence:
MQHINHRFSYFIDNYILLLAERFGIPLSTEAPSERSGGDDVDDIDGSGLAKWEQVAECVREALSRPKTAEERQALLHVDVSMLDAKVCRGRLQYLIWQAERSVEGGVGERIKGKESPSFSVFNITRDSLRDKIQGIYASVRDHLPSTIAPRRNHNGNSTGPAVQSGSQGDKDVMDYDSDGDGSEGSLHVVDVVLPTEAEARRNRVVAEARDDLLSKIQKMQLDFFEKHRRWVDVPFDFDTVPNDGSGPEETSPQSDSTGLSKSAAREALENGTPTRLPPSSEMPEPTMRNELAGESDGPKLDPIMSLFNALREDRRVGRPPRPSQMREEDYEKQYVHASTMPSAPAGFPNALDGQTIRRFNGRPSTESVRTPEPEKPANEPLPIKNTISNGGAVTHEGRAPQLRANRWNVVEYDGEDSSESESSTDVECVT
Protein: Ribosome biogenesis protein SSF1 (P38789)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Required for biogenesis of the 60S ribosomal subunit.
Subcellular location: Nucleus, nucleolus {ECO:0000269|PubMed:12702244}.
Interaction partners:
- Ribosome biogenesis protein NSA1
- Ribosome biogenesis protein ERB1
- Nucleolar GTP-binding protein 1
- Ribosome production factor 1
- Pescadillo homolog
- Ribosome biogenesis protein RLP7
- ATP-dependent RNA helicase HAS1
- Ribosomal RNA-processing protein 15
- Proteasome-interacting protein CIC1
- Ribosomal RNA-processing protein 1
Sequence:
MAKRRQKKRTHAQLTPEQEQGIPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEISMRHYFIDIREVEISRNLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDLGAYTSESEIEDDAIVRVVDNQDVKAKHSQSLKSQRTPVEKKDNKEREKETEEEDVEMEEPKPSENLQPTPRKKAIKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEKRHAAKMRLKEQRKKEQEENIAKKKAVKDAKKQRKLERRKARAAEGGEGQGKDDAMSDDESSSSDSEHYGSVPEDLDSDLFSEVE
Protein: CCHC-type zinc finger nucleic acid binding protein (CCHC-type zinc finger protein CG3800) (Q8T8R1)
Organism: Drosophila melanogaster (Fruit fly)
Function: Single-stranded DNA/RNA-binding protein with sequence specificity (By similarity). Binds G-rich elements in target mRNA coding sequences (By similarity). Prevents G-quadruplex structure formation in vitro, suggesting a role in supporting translation by resolving stable structures on mRNAs (By similarity). IRES trans-acting factor (ITAF) that can promote IRES-dependent translation of Myc mRNA. Involved in the control of wing size by regulating Myc levels.
Subcellular location: Nucleus {ECO:0000250|UniProtKB:P53996}. Cytoplasm {ECO:0000250|UniProtKB:P62633}. Endoplasmic reticulum {ECO:0000250|UniProtKB:P53996}.
Interaction partners:
- Heterogeneous nuclear ribonucleoprotein K, isoform C
- Protein muscleblind
- RNA helicase
- Heterogeneous nuclear ribonucleoprotein A1
Sequence:
MSMSATCYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHLRRECDEKGGRN
Protein: Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13) (GA 2-oxidase 3) (Gibberellin 2-beta-hydroxylase 3) (Gibberellin 2-oxidase 3) (O64692)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8.
Interaction partners:
- Ent-kaur-16-ene synthase, chloroplastic
- Gibberellin 3-beta-dioxygenase 2
- Gibberellin 3-beta-dioxygenase 1
- Gibberellin 3-beta-dioxygenase 4
- Gibberellin 20 oxidase 4
- Gibberellin 20 oxidase 1
- Gibberellin 3-beta-dioxygenase 3
- Gibberellin 20 oxidase 3
- Gibberellin 20 oxidase 2
- Ent-copalyl diphosphate synthase, chloroplastic
Sequence:
MVIVLQPASFDSNLYVNPKCKPRPVLIPVIDLTDSDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDKAGPPDPFGYGTKRIGPNGDLGWLEYILLNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDYRLGLFEKRPPFSLSNV
Protein: Protein trichome birefringence-like 13 (Q9ZQR5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: May act as a bridging protein that binds pectin and other cell wall polysaccharides. Probably involved in maintaining esterification of pectins (By similarity). May be involved in the specific O-acetylation of cell wall polymers (By similarity).
Subcellular location: Membrane {ECO:0000305}; Single-pass type II membrane protein {ECO:0000305}.
Interaction partners:
- Transmembrane 9 superfamily member 8
- Transmembrane 9 superfamily member 9
- Carbohydrate-binding X8 domain-containing protein
- Dormancy-associated protein homolog 4
- COBRA-like protein 7
- Cytochrome c oxidase subunit 6b-1
- Arabinosyltransferase RRA3
- Plasmodesmata-located protein 1
- Copper transporter 5
- Alcohol dehydrogenase-like protein
Sequence:
MATTSHNKPSLFPLLSLLCFISIFLLLSLSKRASLSSPKTHRSATVFPPKPDGSLSPLSATCDFSEGSWIYDPNPRSTRYTSSCKEIFKGWNCIRNNKTNGFEISNWRWKPKHCDLPSFDPLKFLQSHRNTNIGFVGDSLNRNMFVSLFCMLKSVTGELKKWRPAGADRGFTFSQYNLTIAYHRTNLLARYGRWSANAKGGELESLGFKEGYRVDVDIPDSSWAKASSFHDILILNTGHWWWAPSKFDPVKSPMLFFEGGRPILPPIPPATGLDRVLNNMVNFVEKTKRPGGIIFFRTQSPRHFEGGDWDQGGTCQRLQPLLPGKVEEFFSVGNNGTNVEVRLVNQHLYNSLKSRSAFHVLDITRMSEYRADAHPAAAGGKNHDDCMHWCLPGLTDTWNDLFVATLHTIKAL
Protein: Myosin-11 (Q20641)
Organism: Caenorhabditis elegans
Interaction partners:
- Myosin regulatory light chain
- EF-hand domain-containing protein
- Myosin-2 essential light chain
- EF-hand domain-containing protein
- Myosin, essential light chain
- Actin
- Tropomyosin isoforms a/b/d/f
- Rho-associated protein kinase let-502
- cGMP-dependent protein kinase interacting domain-containing protein
- Myosin-11
Sequence:
MGDLQYLQVQRAAVADPATLAAWAQRKLCWVPDQNEGFLIGSIKRETNDEVLVELVDTSRQVTISRDDVQKANPPKFDKIEDMSELTYLNEASVLHNLKDRYYSSLIYTYSGLFCVVINPYKKLPIYSEDLIEEFKGKKRHEMPPHIFAIADTAYRSMLQEREDQSILCTGESGAGKTENTKKVIQYLAHVAGATRNKSLNAAAQQNIVQKPDVRNPIGELEHQLLQANPILEAFGNSKTVKNDNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVLRQAQDERSFHIFYQILRGCSAKEKSEYLLEGVDNYRFLVNRGITLPNVDDVQEFHSTINSMRIMGFADDEISSIMRVVSAVLLLGNLEFTQEKKSDQAMLQDDRVIQKVCHLLGLPVIELQKAFLRPRIKVGREFVNKAQNQEQAEFAVEAIAKASYERLFKWLVTRINKSLDRTHRQGASFIGILDIAGFEIFDINSFEQICINYTNEKLQQLFNNTMFILEQEEYQREGIEWDFIDFGLDLQPTIDLIEKPMGVLALLDEECLFPKANDKSFVEKLQKTHNKHPKFIVPDMRSKSHFAVVHYAGRVDYSADQWLMKNMDPLNENVVGLMQNSTDPFVAGIWKDAEFAGICAAEMNETAFGMRSRKGMFRTVSQLHKEQLTKLMTTLRNTSPHFVRCIIPNHEKKSGKINSNLVLEQLRCNGVLEGIRICRQGFPNRVPFQEFRHRYEILTPDVIPKNFIDGKESVRKMITALDIDTNLYRIGQSKVFFRTGVLAHLEEERDLKLTALIMNFQAQCRGFLSRRLYTRRQQQSSAIRIIQRNGLAYLKLRNWQWWRLFTKVKPLLQVTRTDDEIRAKDDELRATKERLLKMEHDFRENEKKLDQVIVERAVIQEQLQQESENSAELDDIRGRLQTRNQELEYIVNDMRDRLSEEEQQNEKNNDERRKQMETVRDLEEQLEQEEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEKRLLEEKVEGLTTQLLDHEERAKHGVKAKGRLENQLHELEQDLNRERQYKSELEQHKRKLLAELEDSKDHLAEKMGKVEELNNQLMKRDEELQHQLTRYDEESANVTLMQKQMRDMQTTIDELREDMETERNARNKAEMTRREVVAQLEKVKGDVLDKVDEATMLQDLMSRKDEEVNATKRAIEQIQHTMEGKIEEQKAKFSRQVEELHDQIEQHKKQRSQLEKQQNQADQERADMAQEIALLQASRADIDKKRKIHEAHLMEIQANLAESDEHKRTLIDQLERSRDELDHLNRVREEEEHAFANMQRRLATAEGQIQELNEQIQEETRLKIANINRARQLEDEKNALLDEKEEAEGLRAHLEKEIHAARQGAGEARRKAEESVNQQLEELRKKNLRDVEHLQKQLEESEVAKERILQSKKKIQQELEDSSMELENVRASHRDSEKRQKKFESQMAEERVAVQKALLDRDAMSQELRDRETRVLSLLNEVDIMKEHLEESDRVRRSLQQELQDSISNKDDFGKNVHELEKAKRSLEAELNDMRVQMEELEDNLQIAEDARLRLEVTNQALKSESDRAISNKDVEAEEKRRGLLKQIRDLENELENEKRGKSGAVSHRKKIENQIGELEQQLEVANRLKEEYNKQLKKNQQIIKEYQIECEEARQAKEDIAALLREADRKFRAVEAEREQLREANEGLMQARKQLELENDELEELRAKGGGISSEEKRRLEAKIAQLEEELEEEQSNCELAIDKQRKAQVQLEQITTDLSMERTLNQKTEAEKQSLERSNRDYKAKITELESGAQSRARAQMAALEAKVQYLEDQLNVEGQEKTAANRAARRLEKRLNDTTQQFEDEKRANEQAKELLEKSNLKNRNLRRQLDEAEDEMSRERTKHRNVQREADDLLDANEQLTRELMNLRGNNRRRADMRLRRGFDVPGSSDNLAREEENESNVSGSEHGMSVN
Protein: Olfactory receptor (E9Q9Z6)
Organism: Mus musculus (Mouse)
Subcellular location: Cell membrane {ECO:0000256|ARBA:ARBA00004651, ECO:0000256|RuleBase:RU363047}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004651, ECO:0000256|RuleBase:RU363047}.
Interaction partners:
Sequence:
MIGERNITKITQFILLGFSDFPRITVPLFVMFLMIYTLAVTWNFSLIALIRLDSHLHTPMYFFLSNLSIIDICYITSTAPKMLSNFFQENQTISFVGCIVQYFILSTMGLTESCLMTAMAYDRYAAICNPLLYSSVMSPTLCAQMVMGSYTAGLTGSVSQICALLQLYFCGPNVIRHFFCDISQLLNLSCSDAFFVQVLLAILTMCFGIANALATMLSYGFIVLSILKITSAKGRSKAFNTCASHLTAVSLFYSTAIFVYLRSSSGGSSSFDRFASVFYTVVIPMLNPLIYSLRNKEIKDAMKRLQKKKICS
Protein: Anion exchange protein (B3WFV9)
Organism: Caenorhabditis elegans
Subcellular location: Cell membrane {ECO:0000256|ARBA:ARBA00004651}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004651}. Membrane {ECO:0000256|RuleBase:RU362035}; Multi-pass membrane protein {ECO:0000256|RuleBase:RU362035}.
Interaction partners:
- K+/Cl-Cotransporter
- Solute carrier family 12 member 1
Sequence:
MEEETDEESPAKIARSRSCEPPGSSSRSRESRGSLWMSMGVHVENSRRRRMSKARRESQSIELSSLAPGTRVMFLLKEKENTPALFTEMGELNNEEWRETARWVKFEEDVEQGGNRWSKPHVATLSLHSLFQLRSCIMNGHFMNDLAETDIPSIFNAVIENLEKSGDLPSENREELREILLRKHVHQYEQPPFWAFSRWFDDLVTSSSPSTSRTSSFSSHSLSSSQQVFHECLSNILLTISIRKAKKNGAGGEKGGFLSTVRSISDIGKSFSHGKNLSKIEEKPEGPVTSQTAGAPSGSSNQLTLPTVESVPKDISSEESSKGNLHFLKKLPAGVEASNVLIGEVDFLTRHICCFIRLKNANQLGDLTEVPVPTRFIFLLLGPTGHGQQYREIGRAIATLMADEIFHDVAYGARDVDDLLDGIDEFLDQVTVLPPGEWDPNIRIEPPSKLPSQEKRKQIGQELLVEPSSHKHVKKVVEEEEIHSHGDDPALKRTGKLFGGLILDIKRKAPHFVSDFTDAFNLQCLASICFMYFGLLAPIVTFGGLLEEATHQRMAAMENLFGGALCGVIYHFFAGQPLTIVGSTGPVLVFETIVFDFCHRFGIVYLSFRFWVHVWTAVIIFLMVVTDASALVSFITRFTEESFATLIAVIFIYEAIMKLVKIKGQLDMINYSRDFVEGGFCSCVPPIGKPSVSPDHARLVIKSTGLPIAFNDTFIDYTAANLTDCRTIGGSFDGTTCFPLYDKLLMSILLTVGTFFLATTLKKMRNSCYFPSSVRQLLSDFAVMIAIASMTFVDIFVGVNTPKLNVPSTFRPTWEGRGWFIPPFDANEWWTAPLAILPALLACILIFMDQQITTVIVNRKENKLKKGCGYHLDLLVLSVSILMVGFLGLPIYVAATVLSINHINSLKVESECKAPGEVAQFVGVREQRVTGIVTFLIIGLSVLATNILGRIPMPVLYGVFLYMGISALGGIQLFDRTLLLFMPMKYQPDTIYIRHVPIRKIHLFTAFQIGCLALLWVIKSIKSTSILFPIMLVVMVAIRKMMEKAFTTTDLKYLDDPMPDFHLRKKEDAKRRQSEGEAVEIEFDNENQATIHAVKTEAHLHIPMASGNVIKIPLAAIQEPSHSINLTKEVNNSGMWKHITSVDSKNSLVRDVPASSDPTSSRDAPIEQPEDDDDPIMIKVIRPSPHTSTSNLTTENTPLLKDEEPPKTNPDEPKV
Protein: Uncharacterized protein At2g24330 (Q9ZQ34)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- ER membrane protein complex subunit 3
Sequence:
MAVGEKEHEGTVVESGGEKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKRRSITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYSSLVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQRYDPDPAAKAAAATVLASKLGAESGLKVFVGDESQLEPTAGKNNAKHSGGLRNRKQTNTRGNSAETTPIHHSDNESNHSGTSERITGTEQNQQMVFEHYNPQEYAAHDGSWISRIAALLVGEDPSQSYALICGNCRMHNGLARKEDFPYITYYCPHCRALNKPKHSEEHSLIAPADTLPKVSLKPMESEVINSSSSTSERGNSPIPLLHTPEIVEEVPETAENETPN
Protein: Methylesterase 9 (AtMES9) (EC 3.1.1.-) (O23171)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Methylesterase shown to have carboxylesterase activity, methyl indole-3-acetic acid (MeIAA) esterase activity, methyl salicylate (MeSA) esterase activity and methyl jasmonate (MeJA) esterase activity in vitro. Required to convert methyl salicylate (MeSA) to salicylic acid (SA) as part of the signal transduction pathways that activate systemic acquired resistance in systemic tissue. MeSA is believed to be an inactive form that needs to be demethylated to exert a biological effect.
Interaction partners:
- Isochorismate synthase 2, chloroplastic
- Heavy metal-associated isoprenylated plant protein 13
- Acyl-CoA N-acyltransferases
Sequence:
MKHYVLVHGGCHGAWCWYKVKPMLEHSGHRVTVFDLTAHGVNMSRVEDIQTLEDFAKPLLEVLESFGSDDKVVLVAHSLGGIPAALAADMFPSKISVAVFVTSFMPDTTNPPSYVFEKFLGSITEEERMDFELGSYGTDDHPLKTAFLGPNYLKNMYLLSPIEDYELAKMLMRVTPAITSNLTGTKSLTAQGYGSISRVYIVCGEDKGIRVDFQRWMIENSPVKEVMEIKDADHMPMFSKPHELCDRLLKIADKYP
Protein: Septin-2 (B5MCX3)
Organism: Homo sapiens (Human)
Subcellular location: Cell projection, cilium membrane {ECO:0000256|ARBA:ARBA00004309}. Cleavage furrow {ECO:0000256|ARBA:ARBA00004626}. Cytoplasm, cytoskeleton, spindle {ECO:0000256|ARBA:ARBA00004186}. Midbody {ECO:0000256|ARBA:ARBA00004214}.
Interaction partners:
Sequence:
MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALGHHV
Protein: E3 ubiquitin-protein ligase UHRF2 (EC 2.3.2.27) (NIRF) (Np95-like ring finger protein) (Nuclear protein 97) (Nuclear zinc finger protein Np97) (RING-type E3 ubiquitin transferase UHRF2) (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Q7TMI3)
Organism: Mus musculus (Mouse)
Function: E3 ubiquitin ligase that plays important roles in DNA methylation, histone modifications, cell cycle and DNA repair. Acts as a specific reader for 5-hydroxymethylcytosine (5hmC) and thereby recruits various substrates to these sites to ubiquitinate them. This activity also allows the maintenance of 5mC levels at specific genomic loci and regulates neuron-related gene expression. Participates in cell cycle regulation by ubiquitinating cyclins CCND1 and CCNE1 and thus inducing G1 arrest. Ubiquitinates also PCNP leading to its degradation by the proteasome. Plays an active role in DNA damage repair by ubiquitinating p21/CDKN1A leading to its proteosomal degradation. Promotes also DNA repair by acting as an interstrand cross-links (ICLs) sensor. Mechanistically, cooperates with UHRF1 to ensure recruitment of FANCD2 to ICLs, leading to FANCD2 monoubiquitination and subsequent activation. Contributes to UV-induced DNA damage response by physically interacting with ATR in response to irradiation, thereby promoting ATR activation (By similarity).
Subcellular location: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00358, ECO:0000269|PubMed:21598301}. Chromosome {ECO:0000250|UniProtKB:Q96PU4}. Note=Enriched at genomic loci that are enriched for 5-hydroxy-methylcytosine (5hmC). {ECO:0000250|UniProtKB:Q96PU4}.
Interaction partners:
- Histone deacetylase 1
- Proliferating cell nuclear antigen
- DNA
- PEST proteolytic signal-containing nuclear protein
- Ubiquitin carboxyl-terminal hydrolase 7
- DNA
Sequence:
MWIQVRTIDGSQTRTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSSLPSTSKQNDAQVKPSSHNPPKVKKTARGGSSSQPSTSARTCLIDPGFGLYKVNELVDARDVGLGAWFEAHIHSVTRASDGHSRGKTPLKNGSSYKRTNGNVNHNSKENTNKLDNVPSTSNSDSVAADEDVIYHIEYDEYPESGILEMNVKDLRPRARTILKWNELNVGDVVMVNYNVENPGKRGFWYDAEITTLKTISRTKKEVRVKVFLGGSEGTLNDCRVMSVDEIFKIEKPGAHPISFADGKFLRKNDPECDLCGGDPDKTCHMCSCHKCGEKRDPNMQLLCDECNMAYHIYCLSPPLDKVPEEEYWYCPSCKTDSSEVVKAGERLKLSKKKAKMPSASTESRRDWGRGMACVGRTKECTIVPSNHYGPIPGIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLVLAGGFEDEVDRGDEFTYTGSGGKNLAGNKRIGAPSADQTLTNMNRALALNCDAPLDDKIGAESRNWRAGKPVRVIRSFKGRKISKYAPEEGNRYDGIYKVVKYWPEISSSHGFLVWRYLLRRDDVEPAPWTSEGIERSRRLCLRLQYPAGYPSEKEGKKTKGQSKKQGSEATKRPASDDECPGDSKVLKASDSTDAVEAFQLTPQQQRLIREDCQNQKLWDEVLASLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYVMVLNETLQTLLDLFFPGYSKGR
Protein: ATP synthase peripheral stalk subunit b, mitochondrial (ATP synthase F(0) complex subunit B1, mitochondrial) (ATP synthase peripheral stalk-membrane subunit b) (ATP synthase proton-transporting mitochondrial F(0) complex subunit B1) (ATP synthase subunit b) (ATPase subunit b) (P24539)
Organism: Homo sapiens (Human)
Function: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Subcellular location: Mitochondrion. Mitochondrion inner membrane.
Interaction partners:
- ATP synthase peripheral stalk subunit OSCP, mitochondrial
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
- ATP synthase F
Sequence:
MLSRVVLSAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAKKAQAQPVM
Protein: Nuclear factor of activated T-cells 1 (A0A0G2JXL2)
Organism: Rattus norvegicus (Rat)
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}. Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Interaction partners:
Sequence:
MTGLEQDPEFDFDFLFEFDQSGGGAAAAEHYSYASPSVTSTLPLPTAHSALPAACHDLQTSTPGISAVPSANHPSGYGGAVDSGPSGYFLSSGNTRPNGAPTLESPRIEITSYLGLHHGSNQFFHDVEVEDVLPSCKRSPSTATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFPRSLGACHLLGSPRHSPSTSPRASVTEESWLGARGSRPTSPCNKRKYSLNGRQPSCSPHHSPTPSPHGSPRVSVTEDTWLGNTTQYTSSAIVAAINALTTDSTLDLGDGVPIKSRKTALEHVPSVALKVEPAGEDLGTTPPTSDFPPEEFAFQHLRKGAFCEQYLSVPQASYQWAKPKSLSPTSYMSPSLPALDWQLPSHSGPYELRIEVQPKSHHRAHYETEGSRGAVKASAGGHPVVQLHGYLENEPLTLQLFIGTADDRLLRPHAFYQVHRITGKTVSTTSHEAILSNTKVLEIPLLPENNMRAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHIPQPSGRTLSLQVASNPIECSQRSAQELPLVEKQSTDSYPVIGGKKMVLSGHNFLQDSKVIFVEKAPDGHHVWEMEAKTDRDLCKPNSLVLEIPPFRNQRITSPVQVSFYVCNGKRKRSQYQHFTYLPANVPIIKTEPTDDFEPALTCGPMSQGLSPLPRPYYSQQLTAPPDPGSCLVAGFAPCSQRNTLMPTSPNASPKLHDLSSPAYAKGLANPGHSGHLGLQPPASEAPTMQELPRPMAVQPNSPEQPTSVRLQPQVSPHLNSSCPLGLQQVLYPNSPSSPLPPAAHEPTCLQPSALPPDVGHRQQQPQKVHRNESPSILPEVCEDSDHNLAPVPVVIKQEPEELDQLYLDDVNEIIRNDLSSTIPHS
Protein: B3 domain-containing protein REM19 (Protein RELATED TO VERNALIZATION 1) (Protein REPRODUCTIVE MERISTEM 19) (Q9XIB5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Involved in the regulation of vernalization (By similarity). Binds to DNA in vitro in a non-sequence-specific manner. XLG2 promotes the DNA binding activity of RTV1 specifically to promoter regions of FT and SOC1 in vivo and thus leads to the activation of floral integrator genes.
Subcellular location: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326, ECO:0000269|PubMed:22232549}.
Interaction partners:
- B3 domain-containing protein At4g01580
- B3 domain-containing protein At1g49475
- B3 domain-containing protein At3g18960
- B3 domain-containing protein REM17
- Extra-large guanine nucleotide-binding protein 2
- B3 domain-containing protein REM12
- B3 domain-containing protein REM5
- RING/FYVE/PHD zinc finger superfamily protein
- Extra-large guanine nucleotide-binding protein 1
Sequence:
MQMDSAQNQFNKRARLFEDPELKDAKVIYPSNPESTEPVNKGYGGSTAIQSFFKESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLEVTAFRVNEYV
Protein: Olfactory receptor 1C1 (Olfactory receptor OR1-42) (Olfactory receptor TPCR27) (Q15619)
Organism: Homo sapiens (Human)
Function: Odorant receptor.
Subcellular location: Cell membrane; Multi-pass membrane protein.
Interaction partners:
Sequence:
MEKRNLTVVREFVLLGLPSSAEQQHLLSVLFLCMYLATTLGNMLIIATIGFDSHLHSPMYFFLSNLAFVDICFTSTTVPQMVVNILTGTKTISFAGCLTQLFFFVSFVNMDSLLLCVMAYDRYVAICHPLHYTARMNLCLCVQLVAGLWLVTYLHALLHTVLIAQLSFCASNIIHHFFCDLNPLLQLSCSDVSFNVMIIFAVGGLLALTPLVCILVSYGLIFSTVLKITSTQGKQRAVSTCSCHLSVVVLFYGTAIAVYFSPSSPHMPESDTLSTIMYSMVAPMLNPFIYTLRNRDMKRGLQKMLLKCTVFQQQ
Protein: L-idonate 5-dehydrogenase (NAD(P)(+)) (EC 1.1.1.264) (P39346)
Organism: Escherichia coli (strain K12)
Function: Catalyzes the NADH/NADPH-dependent oxidation of L-idonate to 5-ketogluconate (5KG).
Interaction partners:
- 5-keto-D-gluconate 5-reductase
- Thermosensitive gluconokinase
- HTH-type transcriptional regulator IdnR
- Gnt-II system L-idonate transporter
Sequence:
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF