wanglab/gogpt-training-data huggingface dataset:
Protein: acetyl-CoA carboxylase (EC 6.4.1.2) (E9PSQ0)
Organism: Rattus norvegicus (Rat)
Interaction partners:
- Trifunctional purine biosynthetic protein adenosine-3
- Fatty acid synthase
- Holocarboxylase synthetase
- ATP-citrate synthase
- Breast cancer type 1 susceptibility protein homolog
- Acyl-CoA desaturase 1
- 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
Sequence:
MVLLLFLTCLVFSCLTISWLKIWGKMTDSKPLSNSKVDASLLSSKEESFSASDQSEEHGDCSCPLTTPDQEELASHGGPVDASQQRNSVPSSHQKPPRNPLSSNDTCSSPELQTNRVAAPGSEVPEANGLPFPARPQTQRTGSPTREDKKQAHIKRQLMTSFILGSLDDNSSDEDPSASSFQTSSRKGSRASLGTLSQEAALNTADPESHTPTMRPSMSGLHLVKRGREHKKLDLHRDFTVASPAEFVTRFGGNRVIETVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADQYVPVPGGPNNNNYANVELIIDIAKRIPVQAVWAGWGHASENPKLPELLCKHEIAFLGPPSEAMWALGDKISSTIVAQTLQIPTLPWSGSGLTVEWTEDSQHQGKCISVPEDVYEQGCVRDVDEGLQAAEKVGFPLMIKASEGGGGKGIRRAESAEDFPMLFRQVQSEIPGSPIFLMKLAQNARHLEVQVLADQYGNAVSLFGRDCSIQRRHQKIIEEAPATIAAPAVFEFMEQCAVLLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPVSFETPLSPPIARGHVIAARITSENPDEASGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLVNLLETESFQNNDIDTGWLDHLIAQRVQAEKPDIMLGVVCGALNVADAMFRTCMTEFLHSLERGQVLPADSLLNIVDVELIYGGIKYVLKVARQSLTMFVLIMNGCHIEIDAHRLNDGGLLLSYNGSSYTTYMKEEVDSYRITIGNKTCVFEKENDPTVLRSPSAGKLMQYTVEDGQHVEVGSSYAEMEVMKMIMTLNVQESGRVKYIKRPGAVLEAGCVVAKLELDDPSKVHAAQPFTGELPAQQTLPILGERLHQVFHSVLENLTNVMNGYCLPEPFFSMKLKDWVEKLMMTLRHPSLPLLELQEIMTSVAGRIPVPVEKAVRRVMAQYASNITSVLCQFPSQQIATILDCHAATLQRKVDREAFFMNTQSIVQLIQRQEDGTRGYMKAVVLDLLRRYLNVEHHFQQGKRHHPQLCVINLREQFKPDMTRVLDCIFSHSQVAKKNQLVTMLIDELCGPDPTLSEELTSILKELTQLSRSEHCKVALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGHQFCPENLKKLILSETTIFDVLPTFFYHANKVVCMASLEVYVRRGYIAYELNSLQHRELPDGTCVVEFQFMLPSSHPNRMAMPINVSDPDLLRHSKELFMDSGFSPLCQRMGAMVAFRRFEEFTRNFDEVISCFANVPTDTPLFSKACTSLYSEEDSKSLQEEPIHILNVAIQCADHMEDERLVPVFRAFVQSKKHILVDYGLRRITFLIAQEREFPKFFTFRARDEFAEDRIYRHLEPALAFQLELSRMRNFDLTAVPCANHKMHLYLGAAKVKEGLEVTDHRFFIRAIIRHSDLITKEASFEYLQNEGERLLLEAMDELEVAFNNTSVRTDCNHIFLNFVPTVIMDPLKIEESVRAMVMRYGSRLWKLRVLQAEVKINIRQTTSDCAVPIRLFITNESGYYLDISLYKEVTDSRSGNIMFHSFGNKQGSLHGMLINTPYVTKDLLQAKRFQAQSLGTTYVYDFPEMFRQALFKLWGSPEKYPKDILTYTELVLDSQGQLVEMNRLPGCNEVGMVVFKMRFKTPEYPEGRDTIVIGNDITFQIGSFGIGEDFLYLRASEMARTEGIPQIYLAANSGARMGLSEEIKQIFQVAWVDPEDPYKGFRYLYLTPQDYTQISSQNSVHCKHIEDEGESRYVIVDVIGKDSSLGVENLRGSGMIAGEASLAYEKNVTISMVTCRAIGIGAYLVRLGQRVIQVENSHIILTGAGALNKVLGREVYTSNNQLGGVQIMHTNGVSHVTVPDDFEGVCTILEWLSYIPKDNQSPVPIITPSDPIDREIEFTPTKAPYDPRWLLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRARLGGIPVGVIAVETRSVEVAVPADPANLDSEAKIIQQAGQVWFPDSAFKTAQVIRDFNQEHLPLMIFANWRGFSGGMKDMYEQMLKFGAYIVDSLRLFKQPVLIYIPPGAELRGGAWVVLDSSINPLCIEMYADKESRGGVLEPEGTVEIKFRKKDLVKTIRRIDPVCKKLLGQLGTAQLPDKDRKELESQLKAREDLLLPIYHQVAVQFADLHDTPGHMLEKGIISVRVPHRDTEDHIGVSLCLYLGEAWALERIDKCRLQFGSEDILSLLPSTMGSCRARLCAYLWDSNQVVVQWLEQHWSARDNLRSTIRENINYLKRDSVLKTIQSLVQEHPEATMDCVAYLSQHLTPAEQMQVVQLLSTTESPASH
Protein: ELKS/RAB6-interacting/CAST family member 2 (G5EFF2)
Organism: Caenorhabditis elegans
Interaction partners:
- 3'-5' exonuclease domain-containing protein
- C-type lectin domain-containing protein
- Thymosin beta
- Histone H1
Sequence:
MMDNLKAELAQAKIDIDQLEKKQWETLEQLVMRDKLIEQCSLHTEILQKDFRESEARIIQLEQQLLEPGECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSEEIFGKNKTISNLRKQIDGDVERKKAKIRTLRKELCSADMNTGKMCRRAKRAEDRIAKLESDLEEERQKHVGQDISHILDQHNSTVMALEMQLANTQQEKATLNTSVEDLKLRTEEWKHNLLGQFEVLTANSKRECESKEEQIANHKREIMEKDSKIECLMELIQNSERSAEIQKMHDALREKDLKISELSEKLQGLLINQEGEADDTMIDQDDDNKSTHSEDSDGWDKINAI
Protein: Proteasome assembly chaperone 3 (PAC-3) (mPAC3) (Proteasome chaperone homolog 3) (Pba3) (Q9CZH3)
Organism: Mus musculus (Mouse)
Function: Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.
Interaction partners:
- Proteasome assembly chaperone 4
- Proteasome assembly chaperone 2
- Proteasome maturation protein
- Proteasome assembly chaperone 1
Sequence:
MEDKPLVVSKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDISKPVLTTRVLLGQDEPLIHVFAKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW
Protein: CBS domain-containing protein CBSX1, chloroplastic (CBS domain-containing protein 2) (AtCDCP2) (Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) (AtLEJ2) (O23193)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Plastid, chloroplast {ECO:0000269|PubMed:18431481}.
Interaction partners:
- CBS domain-containing protein CBSX3
- CBS domain-containing protein CBSX6
- DUF21 domain-containing protein At4g14240
- CBS domain-containing protein CBSX5
- SNF1-related protein kinase regulatory subunit gamma-like PV42b
- CBS domain-containing protein CBSCBSPB3
- CBS domain-containing protein CBSCBSPB4
- Rac-like GTP-binding protein ARAC8
- GMP synthase
Sequence:
MDAVLYSVPLSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRSGDRNA
Protein: Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform (PP2A B subunit isoform B'-epsilon) (PP2A B subunit isoform B56-epsilon) (PP2A B subunit isoform PR61-epsilon) (PP2A B subunit isoform R5-epsilon) (A4FV68)
Organism: Bos taurus (Bovine)
Function: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.
Subcellular location: Cytoplasm {ECO:0000269|PubMed:12912990}.
Interaction partners:
- Protein phosphatase 2 scaffold subunit Abeta
- Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B
- Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
- Shugoshin 1
- Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
- Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform
- Apoptosis regulator Bcl-2
- REC8 meiotic recombination protein
- Protein phosphatase 1 regulatory inhibitor subunit 1A.
- Ryanodine receptor 2
Sequence:
MSSAPTTPPSVDKVDGFSRKSVRKARQKRSQSSSQFRSQGKPIELTPLPLLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSNEFDPEEDEPTLEASWPHLQLVYEFFIRFLESQEFQPSIAKKYIDQKFVLQLLELFDSEDPRERDYLKTVLHRIYGKFLGLRAFIRKQINNIFLRFVYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLVKVLIPLHTVRSLSLFHAQLAYCIVQFLEKDPSLTEPVIRGLMKFWPKTCSQKEVMFLGELEEILDVIEPSQFVKIQEPLFKQIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSSLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGIIPT
Protein: Homeobox-leucine zipper protein ATHB-17 (HD-ZIP protein ATHB-17) (Homeodomain transcription factor ATHB-17) (Q8S9N6)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Probable transcription factor.
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Ran BP2/NZF zinc finger-like superfamily protein
Sequence:
MIKLLFTYICTYTYKLYALYHMDYACVCMYKYKGIVTLQVCLFYIKLRVFLSNFTFSSSILALKNPNNSLIKIMAILPENSSNLDLTISVPGFSSSPLSDEGSGGGRDQLRLDMNRLPSSEDGDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNSASSLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQERDR
Protein: 1-aminocyclopropane-1-carboxylate synthase 11 (ACC synthase 11) (EC 4.4.1.14) (S-adenosyl-L-methionine methylthioadenosine-lyase 11) (Q9S9U6)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: 1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene.
Interaction partners:
- 1-aminocyclopropane-1-carboxylate oxidase 4
- 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
- 5'-methylthioadenosine nucleosidase
- 1-aminocyclopropane-1-carboxylate oxidase 5
- 1-aminocyclopropane-1-carboxylate oxidase
- S-adenosylmethionine synthase 1
- 1-aminocyclopropane-1-carboxylate oxidase 1
- 1-aminocyclopropane-1-carboxylate oxidase 3
- 1-aminocyclopropane-1-carboxylate oxidase 2
- S-adenosylmethionine synthase 4
Sequence:
MLSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQLSFDLIEKWLEEHPEVLGLKKNDESVFRQLALFQDYHGLPAFKDAMAKFMGKIRENKVKFDTNKMVLTAGSTSANETLMFCLANPGDAFLIPAPYYPGFDRDLKWRTGVEIVPIHCVSSNGYKITEDALEDAYERALKHNLNVKGVLITNPSNPLGTSTTREELDLLLTFTSTKKIHMVSDEIYSGTVFDSPEFTSVLEVAKDKNMGLDGKIHVVYSLSKDLGLPGFRVGLIYSNNEKVVSAATKMSSFGLISSQTQHLLANLLSDERFTTNYLEENKKRLRERKDRLVSGLKEAGISCLKSNAGLFCWVDLRHLLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQTMEVAMDRVKGFVDNNNGGKQKRTMWDTRRRSLINKWVSKLSSVTCESER
Protein: G/U mismatch-specific uracil DNA glycosylase (EC 3.2.2.28) (Uracil mismatch repair protein) (O59825)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Removes uracil from G/U mispairs in ssDNA. Also corrects G/G mispairs. Does not catalyze the removal of thymine from G/T mispairs.
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Adenine DNA glycosylase
- Ubiquitin-like protein pmt3/smt3
- Uracil-DNA glycosylase
- Endonuclease III homolog lyase)
- SUMO-conjugating enzyme ubc9
- Alkylbase DNA glycosidase-like protein mag2
- DNA-3-methyladenine glycosylase 1
Sequence:
MNDIETRDTGTKNDNSSEFNLSVKSHKRKRSFDDENLELEESREETSGGILKKAKTQSFSESLERFRFAHAGSNNEYRKTDVVKNSDTDNGLLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEVDPALLQGVPDYICENPYAIIVGLNPGITSSLKGHAFASPSNRFWKMLNKSKLLEGNAEFTYLNDKDLPAHGLGITNLCARPSSSGADLRKEEMQDGARILYEKVKRYRPQVGLFISGKGIWEEMYKMLTGKKLPKTFVFGWQPEKFGDANVFVGISSSGRAAGYSDEKKQNLWNLFAEEVNRHREIVKHAV
Protein: VirA/G regulated protein (A9CL19)
Organism: Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Interaction partners:
Sequence:
MRPSGNPNVDLSGSTASLAEVPAGATPVLNLIEPRNRPADDSLEGQTDRGEHPSASFDYDGMKLGAAEREAYENWCPSNRPTWKDLVLRARLDAIDSSAWLPDLGEESPLIFRYEGIPLGEGERQAYKEWQEEAQPTWEDLVVNARMAVPDPCADVADEHNPLKEGEEFRSEASKRKRKKPIDQDENSPTSFYYDGMRLGEPEREAYDNWGNAEPPTWKDLVLKARLDAIDSSAWLFASEGSSSTFEYEGIPLGEGERQAYKEWQEDAQPTWEDLVINARMAELDHPSWITDEHNSLEENLEFRPDARQASLKDSTDQRKSSSASFIYDGMKLGEPEHAAYENWSKPERPSWEALILDARQASIASSSVSNSLLAKTSSPVFLYEGMSLGDAERQSYGRWRQPAQPRWQNLVVNARLADLDPLAWIPDEHDPFAEAEALSPTSQSSGANKSNRALGQSDSGRPAFAYLAAQEASHLQSPACSQLETRRALNFGSPGPDANPTESIAKCNRLDGVSKIKRLGTKGRRAVNATIHGGKFGAQGLLSEDCGQAAEPSPSEQTTRPRTDNIGTYASRKNERARLATETGKYESEHIFGFKVVHDTLRATKEGRRLERPMPAYLEYKELHRQHVGTGRGRTGLVGRGWPDDASYRADQRATLSDPVASAEGATASNGYQLNQLGYAHQLATHGLQSETPDGVTMPIQVATISYNYTVSRDPVLSPPSKEQAPPLLHLGPRGQTEAVLARETALTGKWPTLERECQVYQRFLALYDVKKDLDAKQLGVRQKKQALVAALNRTAGLIGASPLEAQSSTAEVEYTTDEPDERRVYDPRDRGRDKAFNR
Protein: U3 small nucleolar RNA-associated protein 16 (U3 snoRNA-associated protein 16) (Bud site selection protein 21) (U three protein 16) (Q08492)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Involved in nucleolar processing of pre-18S ribosomal RNA. Has a role in bud site selection maybe via the regulation of expression of bipolar budding components.
Subcellular location: Nucleus, nucleolus {ECO:0000269|PubMed:11452010, ECO:0000269|PubMed:12068309}.
Interaction partners:
- NET1-associated nuclear protein 1
- Periodic tryptophan protein 2
- U3 small nucleolar RNA-associated protein 13
- U3 small nucleolar RNA-associated protein MPP10
- RNA cytidine acetyltransferase
- U3 small nucleolar RNA-associated protein 20
- Nucleolar protein 58
- Small ribosomal subunit protein eS8A
- U3 small nucleolar RNA-associated protein 8
- KRR1 small subunit processome component
Sequence:
MSNGHVKFDADESQASASAVTDRQDDVLVISKKDKEVHSSSDEESDDDDAPQEEGLHSGKSEVESQITQREEAIRLEQSQLRSKRRKQNELYAKQKKSVNETEVTDEVIAELPEELLKNIDQKDEGSTQYSSSRHVTFDKLDESDENEEALAKAIKTKKRKTLKNLRKDSVKRGKFRVQLLSTTQDSKTLPPKKESSIIRSKDRWLNRKALNKG
Protein: DNA replication licensing factor mcm4 (EC 3.6.4.12) (Cell division control protein 21) (Minichromosome maintenance protein 4) (P29458)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Required for S phase execution.
Subcellular location: Nucleus.
Interaction partners:
- DNA replication licensing factor mcm3
- DNA replication complex GINS protein psf3
- Cell division control protein 18
- Cell division control protein 45 homolog
- DNA replication licensing factor mcm7
- DNA replication licensing factor mcm5
- DNA replication complex GINS protein sld5
- Cell division cycle protein cdt1
- DNA replication licensing factor mcm10
- DNA replication complex GINS protein psf2
Sequence:
MSSSQQSGRANELRTPGRANSSSREAVDSSPLFFPASSPGSTRLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFLDSSSQRTPRSTRRGDIHSSVQMSTPSRRREVDPQRPGVSTPSSLLFSGSDALTFSQAHPSSEVADDTVRVIWGTNVSIQESIASFRGFLRGFKKKYRPEYRNELMPPPDAEQLVYIEALRNMRIMGLEILNLDVQDLKHYPPTKKLYHQLYSYPQEIIPIMDQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVIPDMKQAFFRCSVCGHCVTVEIDRGRIAEPIKCPREVCGATNAMQLIHNRSEFADKQVIKLQETPDVVPDGQTPHSVSLCVYDELVDSARAGDRIEVTGIFRCVPVRLNPRMRTVKSLFKTYVDVVHIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSKRDDIYDILSRSLAPSIYEMDDVKKGLLLQLFGGTNKSFHKGASPRYRGDINILMCGDPSTSKSQILKYVHKIAPRGVYTSGKGSSAVGLTAYITRDQDTKQLVLESGALVLSDGGICCIDEFDKMSDATRSILHEVMEQQTVTVAKAGIITTLNARTSILASANPIGSKYNPDLPVTKNIDLPPTLLSRFDLVYLILDRVDETLDRKLANHIVSMYMEDTPEHATDMEVFSVEFLTSYITYARNNINPVISEEAAKELVNAYVGMRKLGEDVRASEKRITATTRQLESMIRLSEAHAKMHLRNVVEVGDVLEAARLIKTAIKDYATDPATGKISLDLIYVNERETLVPEDMVKELANLISNLTVGGKTMLVSQLLTRFREQSSTRLDASDFEACLGALERRGRIKVITSAGHRIVRSIAQTD
Protein: Opacity protein opA58 (Q04882)
Organism: Neisseria gonorrhoeae
Function: Implicated in a number of adherence functions. OPA proteins are implicated in pathogenesis and are subject to phase variation.
Subcellular location: Cell outer membrane.
Interaction partners:
Sequence:
MNPAPKKPSLLFSSLLFSSAAQAAGEDHGRGPYVQADLAYAYEHITHDYPEQTDPSKGKISTVSDYFRNIRTHSIHPRVSVGYDFGGWRIAADYARYRKWNNNKYSVSIKELLRNKVNGNRTDRKTENQENGTFHAVSSLGLSAVYDFKLNDKFKPYIGARVAYGHVRHSIDSTKKTTEVTTILHGPGTTPTVYPGKNTQDAHRESDSIRRVGLGAVAGVGIDITPNLTLDAGYRYHYWGRLENTRFKTHEASLGVRYRF
Protein: DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.4.13) (P93008)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity).
Subcellular location: Cytoplasm {ECO:0000250}. Nucleus {ECO:0000250}.
Interaction partners:
- U1 small nuclear ribonucleoprotein C
- Protein STABILIZED1
- Small nuclear ribonucleoprotein Sm D2
- Pre-mRNA-processing-splicing factor 8A
- Pre-mRNA-processing-splicing factor 8B
- 110 kDa U5 small nuclear ribonucleoprotein component CLO
- 109 kDa U5 small nuclear ribonucleoprotein component GFL
- Small nuclear ribonucleoprotein E
- Small nuclear ribonucleoprotein E
- Small nuclear ribonucleoprotein SmD3a
Sequence:
MKRTINEVVGSTSVNTLDSSIAKKPVFLTKKQREELALKRRQDQISEQRVRREQLGRPEPETEDVSNGDTNRDKDRDRDRDRDRERDRDRERDRGRDRDRDRDRDRDRDRERERDRERDRRERDREPDRRNREKEREEEVKAREKARVEKLVEREKEKELDAIKEQYLGGKKPKKRVIRPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKQAAKHEKEMRDEIRKKDGIVEKPEEAAAQRVREEAADTYDSFDMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTVPDRPPRHSDTVYIN
Protein: Cyclin-B1-1 (Cyc1-At) (G2/mitotic-specific cyclin-B1-1) (CycB1;1) (P30183)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Nucleus {ECO:0000269|PubMed:1373494}.
Interaction partners:
- Cyclin-dependent kinase A-1
- Cyclin-dependent kinase B2-1
- Cyclin-dependent kinase B2-2
- Cyclin-dependent kinase B1-1
- Cyclin-dependent kinase B1-2
- Wee1-like protein kinase
- Protein FIZZY-RELATED 3
- Anaphase-promoting complex subunit 10
- Protein FIZZY-RELATED 2
- Cell division cycle 20.2, cofactor of APC complex
Sequence:
MMTSRSIVPQQSTDDVVVVDGKNVAKGRNRQVLGDIGNVVRGNYPKNNEPEKINHRPRTRSQNPTLLVEDNLKKPVVKRNAVPKPKKVAGKPKVVDVIEISSDSDEELGLVAAREKKATKKKATTYTSVLTARSKAACGLEKKQKEKIVDIDSADVENDLAAVEYVEDIYSFYKSVESEWRPRDYMASQPDINEKMRLILVEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKELQLVGLSALLMSAKYEEIWPPQVEDLVDIADHAYSHKQILVMEKTILSTLEWYLTVPTHYVFLARFIKASIADEKMENMVHYLAELGVMHYDTMIMFSPSMVAASAIYAARSSLRQVPIWTSTLKHHTGYSETQLMDCAKLLAYQQWKQQEEGSESSTKGALRKKYSKDERFAVALIPPAKALLTGTESA
Protein: ERAD-associated E3 ubiquitin-protein ligase component HRD3A (AtSel1A) (Protein EMS-MUTAGENIZED BRI1 SUPPRESSOR 5) (Q9LM25)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Component of the endoplasmic reticulum (ER) quality control system called ER-associated degradation (ERAD) and involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. Functions as an ERAD substrate-recruiting factor that recognizes misfolded proteins for the HRD1 E3 ubiquitin ligase complex. Targets the misfolded LRR receptor kinase BRI1.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000305}; Single-pass membrane protein {ECO:0000255}.
Interaction partners:
- Protein OS-9 homolog
- Derlin-2.1
- ERAD-associated E3 ubiquitin-protein ligase HRD1A
- Derlin-1
- ERAD-associated E3 ubiquitin-protein ligase HRD1B
- Derlin-2.2
- Ubiquitin-conjugating enzyme E2 32
- ERAD-associated E3 ubiquitin-protein ligase component HRD3B
- Cell division control protein 48 homolog A
- E3 ubiquitin-protein ligase RMA1
Sequence:
MRILSYGIVILSLLVFSFIEFGVHARPVVLVLSNDDLNSGGDDNGVGESSDFDEFGESEPKSEEELDPGSWRSIFEPDDSTVQAASPQYYSGLKKILSAASEGNFRLMEEAVDEIEAASSAGDPHAQSIMGFVYGIGMMREKSKSKSFLHHNFAAAGGNMQSKMALAFTYLRQDMHDKAVQLYAELAETAVNSFLISKDSPVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKIGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSLSRWALEAYLKGDVGKALILYSRMAEMGYEVAQSNAAWILDKYGERSMCMGVSGFCTDKERHERAHSLWWRASEQGNEHAALLIGDAYYYGRGTERDFVRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDESLQSDAAARLPVTLALASLWLRRNYADTVLVRVVDSLPEVYPKVETWIENVVFEEGNATILTLFVCLITILYLRERQRRQVVVVADPVAADVAQPLDADVAQHLAAFPR
Protein: Uncharacterized protein, isoform A (Uncharacterized protein, isoform B) (Q9VBU0)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MPEKTTHNAPAWLTEEYVEKKLRVYFKNDTLNLKKLTIKPATANGENYASVMTRISVEYITKDSKDNQSATFLLKTTFADKDPAAHLLINYGIYTREIDMYEQILPRLADIVKNELHDSRKLFAATVGVDRERDSIMFEDLSLERYKVACRVKKLDLEHTYLVLEKLADFHAAGAALAQRQPGIFEKNYDRGFFNKHVRGYEPIMKNILKALSRTLDLSPDLKERYQAKIDRLIDNVMDYGERSTSVAPGDFVTLAHGDIWTTNVMFQYDDEGHPVNAIFIDFQFSVWNSPAIDLQYFFSTSIHENLRLERQTELVQFYFYKLVVALERVKYSGKVPSLFEFQQQFRTKGFYAVFASLIFEPTMVYNGKEEPSIEQFMTSDEKGVRLRDAVYQTEENLKKLHLTLPFLDQLGLLDEM
Protein: Polyadenylate-binding protein RBP47 (Poly(A)-binding protein RBP47) (RNA-binding protein 47) (NplRBP47) (Q9LEB3)
Organism: Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco)
Function: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation.
Subcellular location: Nucleus. Cytoplasmic granule. Note=Relocalizes from nucleus to cytoplasmic stress granules (SGs) under heat stress.
Interaction partners:
Sequence:
MNGGDMNQQQQQQQQQHQQQQQQWLAMQQYQQQWMAMQYPAAAMAMQQQMMYGQQYMPYYQQHQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS
Protein: GH07792p (Q95TB1)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MVTGPGGAITMMNMIENATDVRLFDCIWIIKPGNNYMMMKTHISLRVDDFYGMAARSELTIRQGTTSDAVEIENVMWPNNGLSKESHVAPILNGYYIRLRGVFGMSSKLAIVYSVFNYLNCYIGSEFLCGNNHCISIRLHCDGFDHCGDGSDEPDSCEEDWAHLHHDRRWYSHKPNYYFPKIDQYPDLKTATGIFIISTLGIFGVLSGWMVILYRMGVRARHQRELQSHLQTISELLDRQDEDRTPDEPPSYEAPPDYEEVIKVGMQQELREPRRQRRARRAPPRDRSCSRAASNCTVQSVLPLHRSCTLERDQEQPSTSAAAMTHAVAATDTTEDAEHVQTMAQRMLLATAICGRSRVPPIPPCSR
Protein: Protein MENT (Methylated in normal thymocytes protein) (Q569E4)
Organism: Mus musculus (Mouse)
Function: Involved in control of cellular proliferation. Onconcogenic modifier contributing to the tumor suppressor function of DNMT3B.
Subcellular location: Secreted {ECO:0000305}.
Interaction partners:
Sequence:
MVPAACMLLWALLLSLEYRAAGAEDQTTTPTATTIGMQRVSFRFGGPARSLHSTNPTARTTVPGKLRVTLEDENDALATADRLALPAAAELLSTVTGYSRSSVPSPSDWEEDGSLEEGVVDTRKTTNGPVSLFSTTNTVGSSGTTGRFLANSQEREIKLTTDVRSLSSKTTVVDLSSESTLQQWSTPGSTPSPWLKPSFTAMPSPEDLRVVLMPWGPWHCHCKSGTMSRSRAGKLHGLSGRLRVGALNELRTEHRPCTYQLCACNRHLEECPLDSSLCSDHSCSSRAPFQSSTTSLVPVHLRRRPILPPTSPSPSPALAFWKRVRIGLEDIWNSLSSVFTETQPVERIQR
Protein: LIM domain-containing protein (Q502G3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
Sequence:
MEAEAEAPELNVDGLQQNQTAGEPEVPKRSDVKVYKEFCDFYVRYNMTNALANAVCERCKSSFSPTEKMVNSNGELYHEQCFTCAQCFQQLIQGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFVVGRVIKAMNSSWHPDCFCCEVCEAVLADVGFVKSGGRPLCRSCHSRQKALSLGKHVCQKCLCVVEEPLMYRSDPYHPDHFNCSHCGKELTADARELKGELYCLPCHDKLGVPICGACRRPVEGRVVNAMGKQWHVEHFVCVKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFQCNRVIEGDVVSALNKAWCVRCFSCSTCTSRLTLKDKFVEIDLKPVCKHCYERMPDELKRRLSREQESRDKRKRRPMCL
Protein: histidine--tRNA ligase (EC 6.1.1.21) (Histidyl-tRNA synthetase) (Q584V0)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
- Elongation initiation factor 2 alpha subunit, putative
- Tyrosyl/methionyl-tRNA synthetase, putative
- Uracil-DNA glycosylase
- threonine--tRNA ligase
- Alanine--tRNA ligase
- Valine--tRNA ligase, mitochondrial
Sequence:
MAKTVDNAALLAEIDQLRRLIAEKEALITPDGGSLSKKSKKKSQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAVRELRDFITQIEAYGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALCGGGRYDNLLTTYGSPTAVPCVGFGFGDCVIVELLNEKKLLPELHHVVDDLVIPFDETMRPHALSILRRLRDAGRSADIVFDKKKVVQAFNYADRIGALRAVLVAPDEWARGEVRVKMLREGAGREEGANERGIVLPVDKIV