wanglab/gogpt-training-data huggingface dataset:
Protein: Arogenate dehydrogenase 2, chloroplastic (EC 1.3.1.78) (TyrAAT2) (Q9LMR3)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Involved in the biosynthesis of tyrosine. Has a weak prephenate dehydrogenase activity.
Subcellular location: Plastid, chloroplast {ECO:0000269|PubMed:19136569}.
Interaction partners:
- Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
- Histidinol-phosphate aminotransferase 1, chloroplastic
- Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
- Arogenate dehydratase/prephenate dehydratase 2, chloroplastic
- Arogenate dehydratase/prephenate dehydratase 6, chloroplastic
- Arogenate dehydratase 3, chloroplastic
- Arogenate dehydratase 5, chloroplastic
- Arogenate dehydratase 4, chloroplastic
- Aspartate aminotransferase, chloroplastic
- Aspartate aminotransferase, mitochondrial
Sequence:
MLLHFSPAKPLISPPNLRRNSPTFLISPPRSLRIRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLERLDMAFESVKKELFGRLHQQYRKQMFGGEVQSPKKTEQKLLNDGGVVPMNDISSSSSSSSSSS
Protein: SLAM family member 7 (B4DW98)
Organism: Homo sapiens (Human)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004370}.
Interaction partners:
Sequence:
MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGDCLSPLHRRLCPGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
Protein: Intraflagellar transport protein component, putative (Q388B0)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
- Intraflagellar transport protein 57/55
- C2H2-type domain-containing protein
- Intraflagellar transport protein IFT88, putative
- Intraflagellar transport protein A1
- Uncharacterized protein
- Intraflagellar transport protein 56 homolog
- Intraflagellar transport protein 80
- IFT80/172/WDR35 TPR domain-containing protein
- Ankyrin repeat protein
- Intraflagellar transport protein 22
Sequence:
MTDAPRVTIAADGEETSNGPTAGAGLREHPPKILFNVCRRELFHPNKGYKQLTRRLRQFCTVDVNKEDISMDRLAPYDIVVFGSPQERLSTEDLSVIREYVQQGGSVIMLFGDGHGGRYSYLNGTLEEWTGITLNEDCVVRTVMNKYLHPKEVCVVNGITNRAINKAAGKNVPGVTGYQGYRTGFAMGGTAPFGNRGAPTTLNRTATAGALGNAATTVAAMAMQQQLVDEAAAEAPTNLTFVYPHGLSFNVNRSAVPILSSGFMAYPLNRPIAVVWENSDEAEHNGRRKRGKLLLVGTGLLLEDSWLGKEENELLSTVLFDYMNHHIKLNQIDADEPDITDYHHVPDIASLSERLRVAVEQQEELPRDFTKLFQIETFKLDTDMIPEVVEAYEKLNVKQEPLTLIPPEFLTPLPPVKPAVFEPTHRDPMQPALDLFDLDEEFAPDKVRLSQLTNKCKAEDVHFYILQASEILGVTKKLRSPRNRDPRALLDHVFRHVMQYKMSTAGPRNSSASGLDGMNADTNAAAAAAAGSMMRVIRVLTNENGNKDATPFDNNVPWMLEIRADFGSGDITGKLTLQESSDQFPAQEALLEGTIRPPGEREYPMEYGTALRGAAGEQVFFVFLAILQGNSLRGVCEVAGGVNNSRHFVYEIEEL
Protein: Double-strand break repair protein MRE11 (EC 3.1.-.-) (Meiotic recombination 11 homolog 1) (MRE11 homolog 1) (Meiotic recombination 11 homolog A) (MRE11 homolog A) (MmMRE11A) (Q61216)
Organism: Mus musculus (Mouse)
Function: Component of the MRN complex, which plays a central role in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity and meiosis. The complex possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity, which are provided by MRE11. RAD50 may be required to bind DNA ends and hold them in close proximity. This could facilitate searches for short or long regions of sequence homology in the recombining DNA templates, and may also stimulate the activity of DNA ligases and/or restrict the nuclease activity of MRE11 to prevent nucleolytic degradation past a given point. The complex may also be required for DNA damage signaling via activation of the ATM kinase. In telomeres the MRN complex may modulate t-loop formation.
Subcellular location: Nucleus {ECO:0000250|UniProtKB:P49959}. Chromosome {ECO:0000250|UniProtKB:P49959}. Chromosome, telomere {ECO:0000250|UniProtKB:P49959}. Note=Localizes to DNA double-strand breaks (DSBs). {ECO:0000250|UniProtKB:P49959}.
Interaction partners:
- DNA repair protein RAD50
- Nibrin
- Serine-protein kinase ATM
- Breast cancer type 1 susceptibility protein homolog
- BRCA1-associated RING domain protein 1
- DNA endonuclease RBBP8
- Fanconi anemia group J protein homolog
- X-ray repair cross-complementing protein 6
- Exonuclease 1
- X-ray repair cross-complementing protein 5
Sequence:
MSPTDPLDDEDTFKILVATDIHLGFMEKDAVRGNDTFVTFDEILRLALENEVDFILLGGDLFHENKPSRKTLHSCLELLRKYCMGDRPVQFEVISDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDVLSCAGFVNHFGRSMSVEKVDISPVLLQKGSTKLALYGLGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGNTNFIPEQFLDDFIDLVIWGHEHECKIGPIKNEQQLFYVSQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMQKLPLRTVRRFFIEDVVLANHPNLFNPDNPKVTQAIQSFCLEKIEEMLDSAERERLGNPQQPGKPLIRLRVDYSGGFEPFNVLRFSQKFVDRVANPKDVIHFFRHREQKGKTGEEINFGMLITKPASEGATLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLKERHIDALEDKIDEEVRRFRESRQRNTNEEDDEVREAMSRARALRSQSETSTSAFSAEDLSFDTSEQTANDSDDSLSAVPSRGRGRGRGRRGARGQSSAPRGGSQRGRDTGLEITTRGRSSKATSSTSRNMSIIDAFRSTRQQPSRNVAPKNYSETIEVDDSDEDDIFPTNSRADQRWSGTTSSKRMSQSQTAKGVDFESDEDDDDDPFMSSSCPRRNRR
Protein: GH27479p (Thrombospondin, isoform C) (Thrombospondin, isoform D) (Thrombospondin, isoform E) (Q8T0I9)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHIRPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRNFEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMDDPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITEREKNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALARSLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEPDCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYPGVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNVQHYQRQSQYTARKYSVVTN
Protein: Meromycolate extension acyl carrier protein (ACP) (P9WQF3)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Function: Acyl carrier protein involved in meromycolate extension.
Subcellular location: Cytoplasm {ECO:0000250}.
Interaction partners:
- Probable arabinosyltransferase B
- 3-oxoacyl-[acyl-carrier-protein] synthase 1
- Malonyl CoA-acyl carrier protein transacylase
- Probable arabinosyltransferase C
- 3-oxoacyl-[acyl-carrier-protein] synthase 2
- Probable fatty acid synthase Fas
- Probable arabinosyltransferase A
- Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase beta6 subunit
- Acyl carrier protein MbtL
- NADH-quinone oxidoreductase subunit B
Sequence:
MPVTQEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEEENPEAAQALRAKIESENPDAVANVQARLEAESK
Protein: Protease HtpX homolog (EC 3.4.24.-) (P9WHS5)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Subcellular location: Cell membrane {ECO:0000250}; Multi-pass membrane protein {ECO:0000250}.
Interaction partners:
- PspA protein
- Serine protease PepD
- Probable phosphoglycerate mutase
- ATP-dependent zinc metalloprotease FtsH
- Protein GrpE
- Chaperone protein ClpB
- Conserved protein
- Menaquinone reductase
Sequence:
MTWHPHANRLKTFLLLVGMSALIVAVGALFGRTALMLAALFAVGMNVYVYFNSDKLALRAMHAQPVSELQAPAMYRIVRELATSAHQPMPRLYISDTAAPNAFATGRNPRNAAVCCTTGILRILNERELRAVLGHELSHVYNRDILISCVAGALAAVITALANMAMWAGMFGGNRDNANPFALLLVALLGPIAATVIRMAVSRSREYQADESGAVLTGDPLALASALRKISGGVQAAPLPPEPQLASQAHLMIANPFRAGERIGSLFSTHPPIEDRIRRLEAMARG
Protein: Protein STRICTOSIDINE SYNTHASE-LIKE 5 (AtSSL5) (Protein YELLOW-LEAF-SPECIFIC GENE 2) (Q9CAZ7)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Vacuole {ECO:0000250}.
Interaction partners:
- Cystatin/monellin superfamily protein
- Jasmonate-induced oxygenase 1
- GPI-anchored protein
- Defensin-like protein 200
- Non-specific lipid transfer protein GPI-anchored 13
- Beta-glucosidase 16
- DJ-1 protein homolog E
- Cysteine/Histidine-rich C1 domain family protein
Sequence:
MPMFYSSRFLFFFTIVPLLVSIALYQLDTFDPAPVPSEAYASSTTSIPPLISDKYLTGAEFIGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPLGIAFGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRCSKYYINEERVEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITAIAAKYGVELMFMKNAGVLQVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYIIRLDLLKYPAQKKKL
Protein: Atf1 protein (Q5BK34)
Organism: Rattus norvegicus (Rat)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Interaction partners:
Sequence:
PAPGLCGSCRQRRPSRPGNGSRDGWLLSYDVLFPRPADRRDRRHPAAVRGWQVRSEVGAAWDGGVELPAPGSGQEASRLIMEDSHKSNTSETASQPGSTVPGIISQIVHQVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKILKDLSSEDTRGRKGDGENPSISAVTSMSVPTPIYQTSSGQYIAIAPNGALQLASPGPDGVQALQTLTMTNSSSAQQGAILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPSATSLPQTMVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV
Protein: Retinol-binding protein 4 (Plasma retinol-binding protein) (PRBP) (RBP) (P41263)
Organism: Gallus gallus (Chicken)
Function: Retinol-binding protein that mediates retinol transport in blood plasma. Delivers retinol from the liver stores to the peripheral tissues. Transfers the bound all-trans retinol to STRA6, that then facilitates retinol transport across the cell membrane.
Subcellular location: Secreted {ECO:0000269|PubMed:11738088}.
Interaction partners:
- Transthyretin
- Transthyretin
- Uncharacterized protein.
- TR_THY domain-containing protein.
- Uncharacterized protein.
- FABP domain-containing protein
Sequence:
MAYTWRALLLLALAFLGSSMAERDCRVSSFKVKENFDKNRYSGTWYAMAKKDPEGLFLQDNVVAQFTVDENGQMSATAKGRVRLFNNWDVCADMIGSFTDTEDPAKFKMKYWGVASFLQKGNDDHWVVDTDYDTYALHYSCRELNEDGTCADSYSFVFSRDPKGLPPEAQKIVRQRQIDLCLDRKYRVIVHNGFCS
Protein: Protein DOS2 (P54858)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Acts in ubiquitin metabolism and is necessary for the control of single-copy DNA replication.
Interaction partners:
- Putative uncharacterized protein YGR259C
- Putative magnesium-dependent phosphatase YER134C
- Uncharacterized transcriptional regulatory protein YNR063W
- Putative uncharacterized protein YJL064W
- Vacuolar basic amino acid transporter 5
Sequence:
MEFFYEEQVACIEDDKISNSHTKETGSTENTENNELQSRDDKTNEAFQKLEEEVNKRYEKTTSAFKKLVIEKDDGIEINLPISNETTETAQKYLKKLDENIHSVESLAQSYWSKMKTKNFWSGFSSFDNAAENDSNDKDENSKENEIAVGGNRTEAELRTLSKDKSVYLDNKMDLQLDPFDVDEKTEEICSILQGDKDISKLMNDIVPHKISYKDFWHIYFLQRNKILDKESKRKEILSKKEKETEEKEVEWDDEEEEEDDDKVEAVADNKSKGETKVAVSQEGLKDVSDHVGLANKDESKDDDDDDDWE
Protein: Cytosolic carboxypeptidase 2 (EC 3.4.17.-) (ATP/GTP-binding protein-like 2) (Protein deglutamylase CCP2) (Q8CDK2)
Organism: Mus musculus (Mouse)
Function: Metallocarboxypeptidase that mediates deglutamylation of tubulin and non-tubulin target proteins. Catalyzes the removal of polyglutamate side chains present on the gamma-carboxyl group of glutamate residues within the C-terminal tail of tubulin protein. Specifically cleaves tubulin long-side-chains, while it is not able to remove the branching point glutamate. Also catalyzes the removal of polyglutamate residues from the carboxy-terminus of non-tubulin proteins such as MYLK.
Subcellular location: Cytoplasm, cytosol {ECO:0000269|PubMed:17244818}. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole {ECO:0000250|UniProtKB:Q5U5Z8}. Cytoplasm, cytoskeleton, cilium basal body {ECO:0000250|UniProtKB:Q5U5Z8}. Note=Colocalizes with gamma-tubulin in the centrioles and with glutamylated tubulin in the basal bodies of ciliated cells. {ECO:0000250|UniProtKB:Q5U5Z8}.
Interaction partners:
- Latexin
- Retinoic acid receptor responder
Sequence:
MNVLLEMAFLSQTLPDPYEDFIHHHLQYYGYFKAQKSSLPNSGTHQRVWRNSPRYMLNGSFGERDDFISDSLEKEMLLWPTCLSSTGHAHIDAVNRDSLLLSSPLLRTRQLIFDELDEASPRLREPRELFSCFSSRGPLQAPRWPIECEVIKENIHHIEWVPHQPEYFYQPTGSEKVPEIVGEEQGTVVYQLDSVPAEGTYFTSSRIGGKRGTIKELAVTLQGPDDNTLLFESRFESGNLQKAVRVGIYEYELTLRTDLYTDKHTQWFYFRVQNTRKDATYRFTIVNLLKPKSLYAVGMKPLMYSQLDATIYNIGWRREGREIKYYKNNVDDGQQPLYCLTWTTQFPHDQDTCFFAHFYPYTYTDLQCYLLSVANNPIQSQFCKLRALCRSLAGNTVYLLTITNPSRTPQEAAAKKAVVLSARVHPGESNSSWIMNGFLDFILSNSPDAQLLRDIFVFKVIPMLNPDGVIVGNYRCSLAGRDLNRHYKTVLKDSFPCIWYTKNMIKRLLEEREVLLYCDFHGHSRKNNIFLYGCHSNNRKHWLHERVFPLMLSKNAPDKFSFDSCNFKVQKCKEGTGRVVMWRMGIINSYTMESTFGGSTLGSKRDTHFTIEDLKSLGYHVCDTLLDFCDPDQTKYTQCLQELKELLQQEINKKLNNFGQDMDLEGNWSDIPLSDIESSTSGSDSSLSDGPPIRLLNIVADEPNQKTVLKNPKKKRLQTRKQRNEQYQKSYLMRELKLTENAPGRARFVSTLQKQPTFLKSPESPSPSVRRSENPRLNETQLSGREKGTSLDPPLTSPKNKERIQSKKPGFTASCSPKRSTNSSLGPAPDVKPNWSKTRYSATRKDHATMAVYPSLHIYTYP
Protein: LD06837p (Q7KLW6)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
TRNSQRKRRALNCFVKLLLRSESNLKYIQLLSYFTCVNEMALWVDKYRPRELSKLDFHKDQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPSDAGMYDRTVVIDLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLDWQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAKTLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSELDMTDDF
Protein: Pescadillo homolog (AtPES) (Q9LYK7)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (By similarity). Plays an essential role in cell growth and survival through its regulation of ribosome biogenesis and mitotic progression. Required for normal root cell growth and differentiation.
Subcellular location: Nucleus, nucleolus {ECO:0000255|HAMAP-Rule:MF_03028, ECO:0000269|PubMed:23909681, ECO:0000269|PubMed:25443833, ECO:0000269|PubMed:26163696, ECO:0000269|Ref.3}. Nucleus, nucleoplasm {ECO:0000255|HAMAP-Rule:MF_03028}. Note=Localizes in the granular component (GC) region of the nucleolus. {ECO:0000269|PubMed:25443833}.
Interaction partners:
- Probable ribosome biogenesis protein RLP24
- AT5g04600/T32M21_200
- Nuclear/nucleolar GTPase 2
- Guanine nucleotide-binding protein-like NSN1
- Ribosome biogenesis protein BOP1 homolog
- Ribosome assembly factor mrt4
- Ribosome biogenesis protein WDR12 homolog
- Transducin/WD40 repeat-like superfamily protein
- Ribosome production factor 2 homolog
- Probable rRNA-processing protein EBP2 homolog
Sequence:
MPKHYRPTGKKKEGNAARYMTRSQALKHLQVNLNLFRRLCIVKGIFPREPKKKIKGNHHTYYHVKDIAFLMHEPLLEKFREIKTYQKKVKKAKAKKNEELARLLLTRQPTYKLDRLIRERYPTFIDALRDLDDCLTMVHLFAVLPASDRENLEVKRVHNCRRLTHEWQAYISRSHALRKVFVSVKGIYYQAEIEGQKITWLTPHAIQQVFTNDVDFGVLLTFLEFYETLLAFINFKLYHSLNVKYPPILDSRLEALAADLYALSRYIDASSRGMAVEPKVDASFSSQSNDREESELRLAQLQHQLPSSEPGALMHLVADNNKEVEEDEETRVCKSLFKDLKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHHIIDKPSAGHLYLSRVYVQPQWIYDCVNARIILPTEKYLVGRIPPPHLSPFVDNEAEGYVPDYAETIKRLQAAARNEVLPLPGVGKEDLEDPQNLLYAGVMSRAEEAEAAKNKKKMAAQEKQYHEELKMEINGSKDVVAPVLAEGEGEESVPDAMQIAQEDADMPKVLMSRKKRKLYDAMKISQSRKRSGVEIIEQRKKRLNDTQPSS
Protein: Thymidylate synthase 1 (TS 1) (TSase 1) (EC 2.1.1.45) (Thymidylate synthase A) (TS A) (TSase A) (P0CI79)
Organism: Bacillus subtilis (strain 168)
Function: Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
Subcellular location: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00008}.
Interaction partners:
- Dihydrofolate reductase
- Thymidine kinase
- Deoxyuridine 5'-triphosphate nucleotidohydrolase YncF
- SPbeta prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS
- Dihydrofolate synthase/folylpolyglutamate synthase
- Serine hydroxymethyltransferase
- Bifunctional protein FolD
- Thymidylate kinase
- Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase
- ComE operon protein 2
Sequence:
MTQFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSEVPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV
Protein: DNA-directed RNA polymerase subunit Rpo11 (EC 2.7.7.6) (DNA-directed RNA polymerase subunit L) (mjL) (Q57832)
Organism: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Function: DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Subcellular location: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00261}.
Interaction partners:
- DNA-directed RNA polymerase subunit Rpo10
- DNA-directed RNA polymerase subunit Rpo3
- DNA-directed RNA polymerase subunit Rpo5
- DNA-directed RNA polymerase subunit Rpo6
- DNA-directed RNA polymerase subunit Rpo7
- DNA-directed RNA polymerase subunit Rpo1N
- DNA-directed RNA polymerase subunit Rpo1C
- Transcription factor S
- Uncharacterized protein MJ0388
- DNA-directed RNA polymerase subunit Rpo2C
Sequence:
MEIKILERKDNLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEGTDPLEVLKEGLRDIIKMCDTLLDELKEKK
Protein: T-box transcription factor TBX6L (T-box protein 6L) (T-box transcription factor TBX6) (T-box protein 6) (P79742)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Function: Probable transcriptional regulator involved in developmental processes.
Subcellular location: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00201}.
Interaction partners:
- Mesoderm posterior ab.
- Homeobox protein MOX-1
- Fibroblast growth factor 8
- Mesogenin-1
- Paired box 3a
- Protein Wnt
- Hairy-related 1.
- Protein ripply2
- Bone morphogenetic protein 4.
- Mesoderm posterior ba.
Sequence:
MNHLANNYGYYPQDCRTQYSRMNSAEAELTSLPVHVSLQDRELWDKFSSIGTEMLITKSGRRMFPSCKVTVTGLNPKVKYVVIMDMVPFDNHKYKWNKDCWEVNGSSDPHLPNRFFIHPDSPAPGQKWMQYPISFHKLKLTNNTLNSNGLVVLHSMHKYQPRLHIVQSPDPCTPHNPGAYLRFTFPEAAFIAVTAYQNQEITKLKIDNNPFAKGFRDNGLNRKRFRDKGTQEMQDTDRQVKLDLTANECAAGMSQMVEDVDVSVSSSVDCRDTQNSSSVSLNPFISAFTNPSSAGGAAAHQTHTLLSLSNRHFSSPRESNLNSVCAALPVSQLSTGHTSFSRLNPQETHHNSRPKIQLQPPHPSLQCHDLDVRLPLPPKLSRVQLSESALRNLEMSPLSDCANPRPLTNILNRSCFRASTPSGKLLPNPPQPEQFLRGSEREIYPAVQEYTDQQFTLNSQTEHRPHMRPLTEY
Protein: Retrotransposon hot spot (RHS) protein, putative (Q584N3)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
Sequence:
MWNSMRRFYTDGLHAARRFLKRLRGDEEGPTWTMNSSIEDVLLQRFAGLRDMKLHDLLNHHFGETLGTSNVSVGVFVQSPEDYIVNAGFLGRIQRLDEFQLLRAVIYLPRNRIEDIHQWEENATAQIREFVGPVAATKLDSALRIAKEARERAHQTADGVELKGVYESIYNATWGYVESGHNDLPLGMKVVGNSDGEPELWTEEEVNVSHTPYDLCDPLPRHGNLEIAVLTSQEGWPYNSFSIPEHAIQEEAEEPGDYVFDGDVYIRREVMRVWYLVKHRLDLWLGPGVNKKQIPCVLVGTPGIGKSFGVGSFLLQRLLHYDSELLRNIAYFVKGRAYIFFRATNDHPGKVVFYEKEKDGLDAVEAFVVEKVLGYIIYDFWKDRHQPIPADLPGAWPVIVLTSPDPNNYKDWKEPRGCEFLCINCYEEVELKAAVAWRRLSKLEESKITEAHIINLENEWQKTLGWIKKVGPLARQVLEGEKRYKGRVREINEALAEISRGDDSHYMKVLNSRVQWRQDGTTYMLAKLVRVVTENGEECRNRAVSIDIEQKLRVWANTACMRDNYLRKVFRGKEERAADEFENVGVYAFTMGNVVQTIVTHLRYLPRVGEEMDSNVSVLASGNAVGRVPTSLRQFNPETTGQDIEVGCFYRPVQGNFPVVDAFFFVTEPAVDREGRAITATTIVLLQATVAPTHHTTRAKVDKFIKAMKKLFGEWDELARNLKWELIYIQYSDSKPIEERQKCEPVGGRGDYTTELWNRINQFQVKMEGNIVKEITQDEPNAIAGGPAA
Protein: Organic solute transporter ostalpha protein (DUF300) (O65422)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
Sequence:
MMDLTKLKPPQITFYCSAFSVLLTLHFTIQLVSQHLFHWKNPKEQKAILIIVLMAPIYAVVSFIGLLEVKGSETFFLFLESIKECYEALVIAKFLALMYSYLNISMSKNILPDGIKGREIHHSFPMTLFQPHVVRLDRHTLKLLKYWTWQFVVIRPVCSTLMIALQLIGFYPSWLSWTFTIIVNFSVSLALYSLVIFYHVFAKELAPHNPLAKFLCIKGIVFFVFWQGIALDILVAMGFIKSHHFWLEVEQIQEAIQNVLVCLEMVIFAAVQKHAYHAGPYSGETKKKLDKKTE
Protein: C-CAP/cofactor C-like domain-containing protein (O02096)
Organism: Caenorhabditis elegans
Interaction partners:
- Protein phosphatase PHLPP-like protein
- Uncharacterized F-box protein C05B5.5
- DreBriN 1/DreBriN-like family homolog
- F-actin-capping protein subunit beta
- Twinfilin
- Profilin-3
- Actin-depolymerizing factor 2, isoform c
- Glutaredoxin domain-containing protein
- Actin-depolymerizing factor 1, isoforms a/b
- ADP-ribosylation factor-like protein 2
Sequence:
MDPSVVSRLENVANRTENILLKYDSNKKETPVDATPQIINLYDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTHRYFLWIACGRKKADNDEFATLVNDLSKEIVAFSDFKEKNRKSEFYNHICGLEAAVGGFGWVAEPKTPAPFIKDAIDTSVFYLNRILMEHKGKNDFHSEWAKSIKELMLSLHEYVRQHHTTGLVWNSDPGATPMCNRKSGGAPTPPPPPPPPISLIAPSKPSGVGALLESLNTGLSATSRLKKVTPEMQTHKNPVLREVNGQMNRKTEERKVSENKKPEKIHESSIFWDGKIWKVDHQVGNKNAVVEVTDKKESIYIYKCNDSIIKIKGKANAITLDGCRKTSVVFDGLVAQCEIINCQSIQIQTLGELPTVSIQKTDGCHIYLSRDALNAQIVASKSSEMNISAMLEDGDDEYTEMALPEQFMTKIVGKKLVTVASEIV
Protein: AAA-ATPase At2g18193 (EC 3.6.1.-) (Q8GW96)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Membrane {ECO:0000255}; Single-pass membrane protein {ECO:0000255}.
Interaction partners:
- Sulfite exporter TauE/SafE family protein 1
- At5g54100
- WPP domain-containing protein 3
- At5g09570
- At2g41380
Sequence:
MFPSSDFSFSPSSLFSAYASLTGFLMLFRSMLHDFVPEKLRSYFSSLLDRFFTPKSKYLTVIIDENFGLNRNQVFDAAEMYLRSKIGPETERLRVGKIPKQKHFTISIERGEEILDTFEESEVKWSYVQSENEKGDKVKRYYELTFEKKLRDKVLNSYLTHVVAESEEIKRNLRVVKLYSRDVYASDDDDGMAGGNWGCINLEHPSTFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDVFDLELSSIYDNGELKRVLLSTTNRSILVIEDIDCNAEVRDREAENQEDEQIKGKVTLSGILNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDVHINMSYCTGLGFRTLVSNYLGLDGLNHPLCEEIEALVDSTEVTPAELAEELMQDDDTDVVLRGVISFVEKRKVERSKTKKEVSICKATDDDEKQNGSLGCVKKKKKGGKQKGKGKGKGKAKTYLI
Protein: Kinesin-related protein 4 (Kinesin family member 4) (Kinesin-7) (Q54NP8)
Organism: Dictyostelium discoideum (Social amoeba)
Function: Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end (By similarity). Cooperates with dynein in organizing spindle assembly during cell division.
Subcellular location: Cytoplasm, cytoskeleton {ECO:0000305}.
Interaction partners:
- Microtubule-associated protein RP/EB family member 1
Sequence:
MDNNNNNNNNNNDKNDKNELNKIKVAIRVRPLNSRELGIDQKIPWSISKDTISLSQNPNINFTYDYVFGIDSNTIDVYNAIAKSIVNSSLNGINGTIFAYGQTSSGKTFSMRGTESIPGIIKLSIKDIFKSIEDSILEKDYLLKVSYLEIYNEEIKDLLNPTISNKKKLKIHEDIYKGVVVANLKEEIVISPDQIFALMNFGEERRHIGSTMMNDSSSRSHTIFRMQIQSTCKQNGTIQMSTLTLVDLAGSERVSSTGAEGVRLKEGTHINKSLMTLSKVISKLSEEKTQQHVPYRDSKLTRILQPSLGGNSKTAILCTITPATTHQEESISTLQFAKRAKRVKTNYKINQVADANTMLKKYESEILELQNQLVKSEEINSLLRNTISTQEISSNNFKLGMKRFNDAIIGGSLINENKKKKKRRNTLDPSYLLKDKIIKKKIRKSENQKIKKIKNSENNISSSSSNSSGEEDDDDKDDENNYSINQDDKDDSNYEDDDDEDEDDDEESDTDNEDDEDNDEDNDDDDDDDDEFKDNLNLIEPLDDETIKKIKDLDDSLGISGQVKVKREDLDLIYEELEENKKLIEEYESTLELLNNQLDEKEIEHKELLIIIDQWEQECTNRENQNQELLEIDQQSKQSIQQLNDKLLETKQQSKQSIDQLNLQLIDIESESSKNKKSFENVLGVFEKSYRLAERLEDKYFTKEIESKKQIETLANSYLQLETTYQQQLNINQQSQQKIQSLNNDIEQFKLVWVPLKDQVNGYFQENQMFKQYIIELEEKYNTLIDLQKEVEQNYLTNTLEQQRNDQYQIEINQLTTEYNNQIQQLESTNQKLQTQLYNLLANATQSTQTLEQQLQTSKQEIDTLTNEIEQLKNQYDIIRVDNDNLSKESLELKQILLSKTQQLEEQLSLAQQQKGNIEIIQQLESIIVDNQQSIDQLKIEFDQSQQDNQSIKQSYNQLESTLTLAQSENQRLLTENKQFITSLNEIKSLFNSIQQQKETIQLEFNQRLQSWSLDSEKYKEIISTLEQSNQKSIESYESKSLEFQEKENQFDSLLTNYNQLFSKYNDLATSNESNRLEFDQFKKDSNQSIQSLESLERSLKSENDNLLQQSNLLKSQLESIEKQKQDQLIPIQLELESKKCELSKLSSQFSEQTKQVTQLLISVDQYKISTNKLESQISDRNEEINNLKLKAIEINALKEENISLKDQLTKLKKAPKSQTDREKDMIKKELEKLREKFNAIDAKLKQAIQDKQTIQSEKQSLEREIKDLKRSHTSTETELDKLKKTHLAADVKSKDFIALNKSVEILTKSQEQLKSTIIELESDLSKKNIELEKKQEELVTLNQDKLEKEKKTNQLESDHSSATIKLENYENQITQLTSEIIDLKSKFQEFKSESESNIKQQEINLKESNDLNQQLTNDKFELTKQLSDLKVEFDKSKQLWSTRSSESNDTIKELQESIISKDKERQLTSEQLVKLTDQINLKTWEYNDLNSQCQQLTKTLQNVKSSNEQQEQSIVSLESQTSAKIKSLELEISQIQENHRLEVLELNRCKNQLSEKQTLMEQDNIQLNERIIQLLHQKTKHENEILSMESNIIDLENQTKELKSKIETAQQDFEIEKNYHTGLNETNTTTIKTMNEELTRSNQTIQQLLFKISKLEQTSLQTQQQQELQQATISAQQQKQQQLADDQEKQQLYQKIKLIEKELESTKQKNLYITEQFTLKESEYLDTITDYVCKEKEFEKSKASLKTSATKIQALNDIIKKLQEEKPQQQPVVKVSSSQVVNQNGQPIKSILKKPKLVIIPREQLQQPPQFKELTLSTLNSNDSNCEPESVSASSTLTSLQSISKYIGKRSEQTTLEHDLTSSTLNLPLQQQNKKVRLVITKNNKTSTDNLTTTSTSLKSKSSSNGENKENQNNNIIIKNN