wanglab/gogpt-training-data huggingface dataset:
Protein: Laccase-17 (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase 17) (Diphenol oxidase 17) (Urishiol oxidase 17) (Q9FJD5)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Lignin degradation and detoxification of lignin-derived products.
Subcellular location: Secreted, extracellular space, apoplast {ECO:0000305}.
Interaction partners:
- Cellulose synthase A catalytic subunit 4
- Phenylalanine ammonia-lyase 1
- Cellulose synthase A catalytic subunit 7
- Chitinase-like protein 2
- Cellulose synthase A catalytic subunit 8
- Phenylalanine ammonia-lyase 4
- Cinnamoyl-CoA reductase 1
- Cinnamoyl-CoA reductase 2
- Transcription factor MYB63
- Phenylalanine ammonia-lyase 2
Sequence:
MALQLLLAVFSCVLLLPQPAFGITRHYTLEIKMQNVTRLCHTKSLVSVNGQFPGPKLIAREGDQVLIKVVNQVPNNISLHWHGIRQLRSGWADGPAYITQCPIQTGQSYVYNYTIVGQRGTLWYHAHISWLRSTVYGPLIILPKRGVPYPFAKPHKEVPMIFGEWFNADTEAIIRQATQTGGGPNVSDAYTINGLPGPLYNCSAKDTFRLRVKPGKTYLLRLINAALNDELFFSIANHTVTVVEADAIYVKPFETETILIAPGQTTNVLLKTKSSYPSASFFMTARPYVTGQGTFDNSTVAGILEYEPPKQTKGAHSRTSIKNLQLFKPILPALNDTNFATKFSNKLRSLNSKNFPANVPLNVDRKFFFTVGLGTNPCNHKNNQTCQGPTNTTMFAASISNISFTMPTKALLQSHYSGQSHGVYSPKFPWSPIVPFNYTGTPPNNTMVSNGTNLMVLPYNTSVELVMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDPNKDPRNFNLVDPIERNTVGVPSGGWAAIRFLADNPGVWFMHCHLEVHTSWGLRMAWLVLDGDKPDQKLLPPPADLPKC
Protein: Glutamine synthetase cytosolic isozyme 1-3 (GS1) (EC 6.3.1.2) (Glutamate--ammonia ligase GLN1;3) (GLN1;3) (Q9LVI8)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Low-affinity glutamine synthetase. May contribute to the homeostatic control of glutamine synthesis in roots.
Subcellular location: Cytoplasm.
Interaction partners:
- Ferredoxin--nitrite reductase, chloroplastic
- Ferredoxin-dependent glutamate synthase 2, chloroplastic
- Glutamate synthase 1, chloroplastic
- Ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial
- Glutamate dehydrogenase 1
- Glutamate dehydrogenase 2
- Carbamoyl phosphate synthase arginine-specific large chain, chloroplastic
- Carbamoyl phosphate synthase small chain, chloroplastic
- Glutamate--glyoxylate aminotransferase 1
- Glutamine--fructose-6-phosphate aminotransferase 1
Sequence:
MSLLSDLVNLNLTDATGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILG
Protein: SH3 domain-binding protein 4 (EH-binding protein 10) (Transferrin receptor-trafficking protein) (Q9P0V3)
Organism: Homo sapiens (Human)
Function: May function in transferrin receptor internalization at the plasma membrane through a cargo-specific control of clathrin-mediated endocytosis. Alternatively, may act as a negative regulator of the amino acid-induced TOR signaling by inhibiting the formation of active Rag GTPase complexes. Preferentially binds inactive Rag GTPase complexes and prevents their interaction with the mTORC1 complex inhibiting its relocalization to lysosomes and its activation. Thereby, may indirectly regulate cell growth, proliferation and autophagy.
Subcellular location: Membrane, clathrin-coated pit. Cytoplasmic vesicle, clathrin-coated vesicle. Nucleus {ECO:0000305}. Note=Specifically associated with transferrin receptor-containing clathrin-coated pits and clathrin-coated vesicles. May also localize to the nucleus.
Interaction partners:
- Epidermal growth factor receptor substrate 15
- Ras-related GTP-binding protein B
- PDZ domain-containing protein GIPC1
- Protein numb homolog
- Numb-like protein
- Ephrin-A5
- PDZ domain-containing protein GIPC2
Sequence:
MAAQRIRAANSNGLPRCKSEGTLIDLSEGFSETSFNDIKVPSPSALLVDNPTPFGNAKEVIAIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMGYIPSSYVQPLNYRNSTLSDSGMIDNLPDSPDEVAKELELLGGWTDDKKVPGRMYSNNPFWNGVQTNPFLNGNVPVMPSLDELNPKSTVDLLLFDAGTSSFTESSSATTNSTGNIFDELPVTNGLHAEPPVRRDNPFFRSKRSYSLSELSVLQAKSDAPTSSSFFTGLKSPAPEQFQSREDFRTAWLNHRKLARSCHDLDLLGQSPGWGQTQAVETNIVCKLDSSGGAVQLPDTSISIHVPEGHVAPGETQQISMKALLDPPLELNSDRSCSISPVLEVKLSNLEVKTSIILEMKVSAEIKNDLFSKSTVGLQCLRSDSKEGPYVSVPLNCSCGDTVQAQLHNLEPCMYVAVVAHGPSILYPSTVWDFINKKVTVGLYGPKHIHPSFKTVVTIFGHDCAPKTLLVSEVTRQAPNPAPVALQLWGKHQFVLSRPQDLKVCMFSNMTNYEVKASEQAKVVRGFQLKLGKVSRLIFPITSQNPNELSDFTLRVQVKDDQEAILTQFCVQTPQPPPKSAIKPSGQRRFLKKNEVGKIILSPFATTTKYPTFQDRPVSSLKFGKLLKTVVRQNKNHYLLEYKKGDGIALLSEERVRLRGQLWTKEWYIGYYQGRVGLVHTKNVLVVGRARPSLCSGPELSTSVLLEQILRPCKFLTYIYASVRTLLMENISSWRSFADALGYVNLPLTFFCRAELDSEPERVASVLEKLKEDCNNTENKERKSFQKELVMALLKMDCQGLVVRLIQDFVLLTTAVEVAQRWRELAEKLAKVSKQQMDAYESPHRDRNGVVDSEAMWKPAYDFLLTWSHQIGDSYRDVIQELHLGLDKMKNPITKRWKHLTGTLILVNSLDVLRAAAFSPADQDDFVI
Protein: Neuropeptide-like 2 (NEF peptide) (Q9VU58)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Secreted {ECO:0000269|PubMed:16510152}.
Interaction partners:
- Neuropeptide-like 4
- Neuropeptide-like 3
Sequence:
MAKLAICILVFALFALALSARVPREESNPAQEFLTKAQGDFNEFIEKLKALDAKKVEGLFKDGLNTVQEGLQKLNETFLQAPAAST
Protein: Solute carrier family 45 member 3 (Prostate cancer-associated protein 6) (Prostein) (Q96JT2)
Organism: Homo sapiens (Human)
Function: Proton-associated sucrose transporter. May be able to transport also glucose and fructose.
Subcellular location: Membrane {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
Interaction partners:
- Prostatic acid phosphatase
- Prostate-specific antigen
- ETS translocation variant 1
- Plasma kallikrein
- Transmembrane protease serine 2
- Kallikrein-2
- ETS domain-containing protein Elk-4
- Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1
- Solute carrier family 41 member 1
- ETS translocation variant 5
Sequence:
MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVCVPLLGSASDHWRGRYGRRRPFIWALSLGILLSLFLIPRAGWLAGLLCPDPRPLELALLILGVGLLDFCGQVCFTPLEALLSDLFRDPDHCRQAYSVYAFMISLGGCLGYLLPAIDWDTSALAPYLGTQEECLFGLLTLIFLTCVAATLLVAEEAALGPTEPAEGLSAPSLSPHCCPCRARLAFRNLGALLPRLHQLCCRMPRTLRRLFVAELCSWMALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAISLVFSLVMDRLVQRFGTRAVYLASVAAFPVAAGATCLSHSVAVVTASAALTGFTFSALQILPYTLASLYHREKQVFLPKYRGDTGGASSEDSLMTSFLPGPKPGAPFPNGHVGAGGSGLLPPPPALCGASACDVSVRVVVGEPTEARVVPGRGICLDLAILDSAFLLSQVAPSLFMGSIVQLSQSVTAYMVSAAGLGLVAIYFATQVVFDKSDLAKYSA
Protein: PH and Rap-GAP domain-containing protein DDB_G0271806 (Q55AN8)
Organism: Dictyostelium discoideum (Social amoeba)
Interaction partners:
- Probable Ras GTPase-activating-like protein ngap
Sequence:
MHTGEYSELLIGINGHMKKITLKLKNNLEEDQYSNCVKYGWIEKRCGKNQSFSSWKRMWFILKDSKLTYYIKEKNLKKRSSTIGSTQEFFKQQHGIDNNNCTNSNSNNNNNNSDLIHLSAPSLSSSTSSTISPISSSSSLTTTTTTTTTTTNANTNNGLSDSINHVYLEGELGKKKEGKGWKVRWMKLLEHSLVYYKSSKDKEPLGIVNLNECQDCEVNKESSNKFVVVHSSNRYYFKTNTKQELTQWVKSVKSRIPSINQTKMDLDQFQLKGVIEFNSIQQIAETFKFNSQPNCLTITTDEKAYYLSFDSNKDKLDWLNQLNLTINKFKGGFNSGGGSNNSSPSSLQSQQAKESGNGGSLSPNILGNFKSSIKPWRFSSSPSQGRVSIGGGGDRSSTQVKFVDNPLSKSSNKEEFDGGEYGSQILPRKSTIIGPNGGVKVSTSGAVELSPVLISSNNNNNNTISSSGNSIPTCLSDLINESSDNEDGDDLKMMIPESLKNEMMRRSAISSLKNFKLEIFIWSNHQEVFTFLFSDSVLVDQVKAFAFKKIPSLANLSVLDYRLGIDEDTLLEVEFLKFIYSHTMVELALKTCGIVKIGIFHHRKDRRVKEKLYSDKFYGHLLSQSPDGRKGNGVGIGGNGIPIEYSRSEPNLQSCLSSSPSTRETMVPSSPSSHQLITPPPSLKQYEQQLSSSSSSSSQQLQLQLQQQEQEQLLQEQPEAEQSQPEPQPQLEPESEIEIEELEQPIEELLNISTTPISIRSNSILSSSTSASSSPSSTPSLTPVIERQQKMSAAGWHSVNPSVTLNQRRQLISGCPGWNIEVSNPTSTFTSQGFKPKFDKQEHGFYRRYNFDGTSTVQSFLGVDMKMGPLAFSLAKDANDNYRGVLHTKHGAKTISEDSKNIVGILNLLSLSKKVKTKKVVSHLIGLLDPSIDAKLLNLASNQSELQKELLSFEERQTTSGFKFGMVYCRHGQVTDDEIFSNKQGSPEWDEFLSLIGDKIELVGWPHYSAGLDVKFNSTGTHSLYTDYHGNEVMFHVSTMLPFSTTDYQQIERKRQVGNDICVVIFNDGTLSYMPNTITSQFNHVIILVQYDKQNNGYKVSMACKDGVKSPFEPLSPNNLIKKSDIKDFILTKLINGELASLQAPVFASKITRTRESLLNYYISQFL
Protein: Ubiquitin-conjugating enzyme E2 11 (EC 2.3.2.23) (E2 ubiquitin-conjugating enzyme 11) (Ubiquitin carrier protein 11) (Ubiquitin-conjugating enzyme E2-17 kDa 11) (Ubiquitin-protein ligase 11) (P35134)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Mediates the selective degradation of short-lived and abnormal proteins.
Interaction partners:
- RING-H2 finger protein ATL10
- E3 ubiquitin-protein ligase UPL4
- E3 ubiquitin-protein ligase UPL3
- Probable E3 ubiquitin-protein ligase ARI12
- Probable E3 ubiquitin-protein ligase ARI8
- Putative RING zinc finger protein
- Ubiquitin-activating enzyme E1 1
- Ubiquitin-activating enzyme E1 2
- OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1
- Anaphase-promoting complex subunit 10
Sequence:
MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG
Protein: Flavonol 7-O-rhamnosyltransferase (EC 2.4.1.-) (UDP-glycosyltransferase 89C1) (UDP-rhamnose: flavonol 7-O-rhamnosyltransferase) (Q9LNE6)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Flavonol 7-O-rhamnosyltransferase that catalyzes the transfer of rhamnose from UDP-rhamnose to the 7-OH position of 3-O-glycosylated flavonols, such as kaempferol 3-O-rhamnoside, kaempferol 3-O-glucoside, quercetin 3-O-glucoside, quercetin 3-O-galactoside, quercetin 3-O-rhamnoside and isorhamnetin 3-O-glucoside. Is able to glycosylate the flavonols quercetin and kaempferol to yield quercetin 7-O-rhamnoside and kaempferol 7-O-rhamnoside. Shows a strict specificity for UDP-rhamnose as sugar donor. Does not act on 3-O-glycosylated anthocyanins. The accumulation of kaempferol 3-O-rhamnoside-7-O-rhamnoside inhibits basipetal auxin transport, which influences auxin distribution and plant organ development.
Interaction partners:
- Flavonol synthase/flavanone 3-hydroxylase
- Chalcone--flavanone isomerase 1
- Leucine-rich repeat
- Chalcone synthase
- Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1
- Flavonoid 3'-monooxygenase
Sequence:
MTTTTTKKPHVLVIPFPQSGHMVPHLDLTHQILLRGATVTVLVTPKNSSYLDALRSLHSPEHFKTLILPFPSHPCIPSGVESLQQLPLEAIVHMFDALSRLHDPLVDFLSRQPPSDLPDAILGSSFLSPWINKVADAFSIKSISFLPINAHSISVMWAQEDRSFFNDLETATTESYGLVINSFYDLEPEFVETVKTRFLNHHRIWTVGPLLPFKAGVDRGGQSSIPPAKVSAWLDSCPEDNSVVYVGFGSQIRLTAEQTAALAAALEKSSVRFIWAVRDAAKKVNSSDNSVEEDVIPAGFEERVKEKGLVIRGWAPQTMILEHRAVGSYLTHLGWGSVLEGMVGGVMLLAWPMQADHFFNTTLIVDKLRAAVRVGENRDSVPDSDKLARILAESAREDLPERVTLMKLREKAMEAIKEGGSSYKNLDELVAEMCL
Protein: LD40663p (MIP14978p) (TAK1-associated binding protein 2, isoform A) (TAK1-associated binding protein 2, isoform B) (Q6NQZ7)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
- GH01161p
- Mitogen-activated protein kinase kinase kinase 7
- FI16976p1
- Inhibitor of nuclear factor kappa-B kinase subunit beta
- Death-associated inhibitor of apoptosis 2
- GEO06356p1
- Putative mitogen-activated protein kinase kinase kinase 7-like
- LD20892p
- NF-kappa-B essential modulator
- Ubiquitin-ribosomal protein eS31 fusion protein
Sequence:
MAATPPMPPGSNTHQLNGKTVGKGNPLAEAINQHFQRKKQNQHQSPNPSPNPNPNSPASRSGSYEQLELLDHATHPQQQQEASSGKAKPSCHCTNISIMHLFHEMKQEFPTIPDAIVTQCVNENCHQRENCIQMLRKELALHPIPVQSYPAKVLQQQQQQHHQNRQAKPPTPLKPSRIAPPQPEAVLSNGVATPPGVGSPHPDTQPRPRPTTLNLQRQFSTQLQQKIMQRQQRQQRDHQPAQLTPTSLSKPLRRAPPLPPPPKPKPGSFSNDSSCLTSPMSSSESELSLNAVPLSSPTSAAATAAAASAAIASTQQQPSPVRHRSVITLQPEPPYARDFRSIDFPPTTACTPRLPSPSSAASPSAPGGRKSFTSLNLTLRQPTGSAQSAIDITAGPAPSGQGSGITYSSVSFDARRGTQKNFQLTVTDEGSVFSAGSVRPRTLYATPCEPVTSVPANQQPPPPAAVVADGLGDADMTSDVFPYPTQEQNHIVASNYSNNHAVSDNNNIGISNSTDSSPTMPLYEGVMEECDREARAATIERQKQRRDKLANALRDNKKRLLVLEQEINILTEPVPVGESERLDRDIKQLTEDCNRLLDCLNEPQANGPGPAANPTNRQHLLPASNASQQQPQQQPQPFPRQRQSARVQAPPSSLRLHSVPAAPISQPVQDFGQHHSSAPTSACLTPQMQSQQQLLQLQQEPPPTYAQYYQFQQYLQQQRQQQLQQQMQQQQQLQHQMQQQQQPQPQQEEEFLSDSDVDEEEETLDSWACNMCTFRNHPQLNICEACENVRIQPGMIRIVPSGGGAAAAAATPPGSIEQQQQPSQQPYALHT
Protein: ADP-ribosylation factor 4 (P61750)
Organism: Mus musculus (Mouse)
Function: GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Subcellular location: Golgi apparatus {ECO:0000250|UniProtKB:P18085}. Membrane {ECO:0000250|UniProtKB:P18085}; Lipid-anchor {ECO:0000250|UniProtKB:P18085}.
Interaction partners:
- Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1
- Ras-related protein Rab-11A
- Ras-related protein Rab-8A
- Rhodopsin
- Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
- Coatomer subunit beta
- Rab11 family-interacting protein 3
- Rab-3A-interacting protein
- Polycystin-1
- Polycystin-2
Sequence:
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Protein: Aquaporin TIP2-1 (Delta-tonoplast intrinsic protein) (Delta-TIP) (Tonoplast intrinsic protein 2-1) (AtTIP2;1) [Cleaved into: Aquaporin TIP2-1, N-terminally processed] (Q41951)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm. Does not promote glycerol permeability. Its function is impaired by Hg(2+). Transports urea in yeast cells and Xenopus laevis oocytes in a pH-independent manner. Transports methylammonium or ammonium in yeast cells and Xenopus laevis oocytes, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium.
Subcellular location: Vacuole membrane {ECO:0000269|PubMed:10737809, ECO:0000269|PubMed:14576283, ECO:0000269|PubMed:17151019, ECO:0000269|PubMed:8624437}; Multi-pass membrane protein {ECO:0000255, ECO:0000269|PubMed:10737809, ECO:0000269|PubMed:14576283, ECO:0000269|PubMed:8624437}. Note=Tonoplast. It is specifically located in the tonoplast of protein storage vacuoles (PSV) (By similarity). {ECO:0000250}.
Interaction partners:
- NAC domain-containing protein 91
- Protein S-acyltransferase 24
- Probable aquaporin SIP2-1
- Pectin lyase-like superfamily protein
Sequence:
MAGVAFGSFDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLASADF
Protein: AT3g27930/K24A2_2 (Beta-galactosidase) (Q8W106)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Interaction partners:
- Pentatricopeptide repeat-containing protein At1g28690
- At4g16450
- Ethanolamine-phosphate cytidylyltransferase
- Proteinkinase AtPP-like protein
Sequence:
MGNALVKKEPPPPVVLVPPLFDYPPLSARTRMLESSYNLLFGKLALRCLFEDYFEEANRFTGKFLLKPTDDPHVDLVASVSGAVDGRVEGDFVGNAEFRWQSDVDDPHTFVDLSVSTSNPVLLMRSSAYYPKYGIGAFAVYPLISKITGKSSEEYRIMGLRYGSTNLSVGATVTPFSANNELPKHAWLVSKMGSLTVGVQYEPLHGSKDLAKYTDPRNWSCAAGYGVGSQSPLTPSFNIGIELARSSQFIASFYQHVVVQRRVQNPFEENQVVGITNYIDFGFELQSRVDDSKTPPNAPDSLLQVAASWQANKNFLLKGKVGAHSSTLSLAFKSWWKPSFAFNISATTNHRTGNVQCGFGLRVDNLREASYQRADPNFVMLTPNKEHLAEGIVWKMGKRPMYQADVDAENFSELPKELRPSQKIL
Protein: pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 (EC 2.1.1.-) (Protein ftsJ homolog 3) (Putative rRNA methyltransferase 3) (Q8IY81)
Organism: Homo sapiens (Human)
Function: RNA 2'-O-methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation.
Subcellular location: Nucleus, nucleolus {ECO:0000255|HAMAP-Rule:MF_03163, ECO:0000269|PubMed:12429849, ECO:0000269|PubMed:22195017}.
Interaction partners:
- Probable rRNA-processing protein EBP2
- Nucleolar complex protein 2 homolog
- Ribosome biogenesis protein BOP1
- Pescadillo homolog
- 28S rRNA
- WD repeat-containing protein 74
- Protein MAK16 homolog
- Ribosome biogenesis protein NSA2 homolog
- Nucleolar protein 58
- MKI67 FHA domain-interacting nucleolar phosphoprotein
Sequence:
MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGMFSLSTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAGVRGHQGLRDQKRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIEDDADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESWEPLRGKKRSRGPKSDDDGFEIVPIEDPAKHRILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGELPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNTVDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQKKKHKRK
Protein: Small ribosomal subunit protein uS3 (40S ribosomal protein S3) (A0A1D8PSV5)
Organism: Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
Function: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.
Subcellular location: Cytoplasm {ECO:0000305|PubMed:35613268}.
Interaction partners:
- Large ribosomal subunit protein eL27
- Large ribosomal subunit protein uL5
- Small ribosomal subunit protein eS26
- Large ribosomal subunit protein uL22
- Small ribosomal subunit protein eS10
- Large ribosomal subunit protein eL19
- Large ribosomal subunit protein eL15
- 60S acidic ribosomal protein P0
- Small ribosomal subunit protein eS4
- Small ribosomal subunit protein eS1
Sequence:
MVNAILSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGRRIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGIKVKIMKDPAANRFGPRALPDAVKIAEAKDEDEVIPAPTVKSYKQTAEDETETDAPVEAEAEVEATA
Protein: C-X-C motif chemokine ligand 12 (A0A8I6GDX4)
Organism: Rattus norvegicus (Rat)
Interaction partners:
Sequence:
MTSPVFLSTPPLGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKSNNRQVCIDPKLKWIQEYLDKALNK
Protein: Small ribosomal subunit protein uS13 (40S ribosomal protein S18) (J3JS69)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Protein: RNA-binding motif, single stranded-interacting protein (RNA-binding motif, single-stranded-interacting protein 3 isoform 2) (F1QGV3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
Sequence:
MGKRLEQQPMYPQYTYYYPHYLQTKQSYAPPPPPMAPPSPSTNSSSHSAAEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKASGVQAQMAKQQEQDPTNLYISNLPVSMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCDVVIQHFNGKFLKTPPGVPAPTEPLLCKFADGGQKKRQSQSKYPQNGRPWPREGESGMALTYDPTAMQNGFYSSPYSISTNRMIAQTSITPFIAASPVSTYQVQSTSWMPHQQYVMQPTGAVITPTMDHTISMQPANMMGPLTQQMNHLSLGTTGTYMTAAAAPMQGTYIPQYTAVPASAVSVEGVVTDASPQSVPASSQDASGQQQALGVENTSDHAPTYSFQPAK
Protein: Uncharacterized protein (Q4GYD3)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
Sequence:
MYTLYPRFDAQPSDPALLGEAAGNELLKEVTDLTSKGHRMDVGEYIPFRRSLRFNTPQSRRPARRRRGLQDTAPEYESEGSSGFCSDVLATFASQLRCLFPCCGPRRVEDEKLWFGFAMTRGVRNIYLRVVRQHPIVSMIVWSVLFLCETTMVAIYLWQVSGVAEGATWNSFTEEELGLCFCISSALSILLLSQLIFAYSFTPFTIVVVLVTTIYQIVLLFMALVFGLTWASRMYVPMFLRCWPMRQYFLFLLDSVAMLSSSSDRLDVVRLAAPSLSLFLTMVFTTACIFQIQQIFSGTMIGTIDSLYFVMATVSTTGFGDVLPQGNIGRMLTIGIIFVFLAKMPSWIVVVVGMVKMLRDFPKYGGPPHHFIVYGHVSQEDAVSILDEVFKLYPTRSVCFCNASFPRDVLSLGGHPNYRMRSTFMVVKVLNKASLHRMRVSEADAVIISPTSDGTAKARDDDVFLSSVTFQRHAPFVQQYLQLRFGTHIKLLEERETMVDQNMRSIMASALILPGIVPFLVNLVRTASSGGSSPASLWSEEGMDNWKDLYEYSRRATFRTFTVPPYFERRPLRDAVYLLKTFNVLVVGVEEGRNRMMILDLDYKLALSDTILVLHESGSDSVDLALRALDPTEGSRGSMTGCDRSEQWEARMASPAADASAQSGSRGDVPDAEVEELGAVGIDSASLIYPFNPSFEVPTGSNEEVPCLGTECDNSPGKTPPVAMQGHKGKANVPLPNSVALSKGTITSVLDMQVERLRRRLLGEDFVVKCFGDVSLSRLPLGGSLAVLTHLLNWRQAVCTRSEPVESSVERIERQINDILRHVSNEYQCGRSGKAPGENFLFIDHVSSFKQPLLESMYDHYLNDHASRFELVQMMRCIRGIHSRSRVTLLSWQSLSDSFLRQWDSSFEFPLRHIRGSSTMESHLNYAIKESGGAANLRGILIYCSQLSHWDFKDVPLVAVENNIRAILDCHATSEKQQQGVGGGSSRGAEVEQQVMVELKSFKSCISVTPHHADTEWRQRGEVHFQYSLAFMMGRCFSANMLQTIFIHAHRNRCIMKFLNNVLCLHRQGSVFDTGGWNSGDKSDTTLFKVCGNQLLHFQTFGDLFVFLLKHRSWVAIGVFRRFPTSEGLPGVPRYFITNPPMKMPLRVDDVVYALSGVTGAHNRMGC
Protein: NPC1 protein (Q9U5W1)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Endomembrane system {ECO:0000256|ARBA:ARBA00004127}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004127}.
Interaction partners:
Sequence:
MSPRSPLRISPFGVHILIAAVLFTLIQSSKQDCVWYGVCNTNDFSHSQNCPYNGTAKEMATDGLELLKKRCGFLLENSENKFCCDKNQVELLNKNVELAGNILDRCPSCMENLVRHICQFTCSPKQAEFMHVVATQKNKKGDEYISSVDLHISTEYINKTYKSCSQVSVPQTGQLAFDLMCGAYSASRCNPTKWFNFMGDATNPYVPFQITYIQHEPKSNSNNFTPLNVTTVPCNQAVSSKLPACSCSDCDLSCPQGPPEPPRPEPFKIVGLDAYFVIMAAVFLVGVLVFLMGSFLFTQGSSMDDNFQVDGNDVSDEMPYSENDSYFEKLGAHTETFLETFFTKWGTYFASNPGLTLIAGASLVVILGYGINFIEITTDPVKLWASPNSKSRLEREFFDTKFSPFYRLEQIIIKAVNLPQIVHNTSNGPYTFGPVFDREFLTKVLDLQEGIKEINANGTQLKDICYAPLSDDGSEIDVSQCVVQSIWGYFGDDRERLDDHDEDNGFNVTYLDALYDCISNPYLCLAPYGGPVDPAIALGGFLPPGDQLTGSTKFELANAIILTFLVKNHHNKTDLENALTWEKKFVEFMTNYTKNNMSQYMDIAFTSERSIEDELTRESQSDVLTILVSYLIMFMYIAISLGHVKEFKRVFIDSKITLGIGGVIIVLASVVSSVGVFGYIGLPATLIIVEVIPFLVLAVGVDNIFILVQTHQRDQRKPNETLEQQVGRILGKVGPSMLLTSLSESFCFFLGGLSDMPAVRAFALYAGVALIIDFLLQITCFVSLFTLDTKRREENRMDICCFIKGKKPDSITSNEGLLYKFFSSVYVPFLMKKIVRASVMVIFFAWLCFSIAIAPRIDIGLDQELAMPQDSFVLHYFQSLNENLNIGPPVYFVLKGDLAYTNSSDQNLVCAGQYCNDDSVLTQIYLASRHSNQTYIARPASSWIDDYFDWAAAASSCCKYRKDSGDFCPHQDTSCLRCNITKNSLLRPEEKEFVKYLPFFLKDNPDDTCAKAGHAAYGGAVRYSNSHERLNIEASYFMAYHTILKSSADYFLALESARKISANITQMLQGRLMSNGVPMASALTVEVFPYSVFYVFYEQYLTMWSDTLQSMGISVLSIFVVTFVLMGFDVHSALVVVITITMIVVNLGGLMYYWNISLNAVSLVNLVMAVGISVEFCSHLVHSFATSKSVSQIDRAADSLSKMGSSIFSGITLTKFAGILVLAFAKSQIFQVFYFRMYLGIVVIGAAHGLIFLPVLLSYIGAPVSNARLRYHSQAAAEHETALAGIL
Protein: DNA polymerase IV 1 (Pol IV 1) (EC 2.7.7.7) (Q92QM8)
Organism: Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Function: Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (By similarity).
Subcellular location: Cytoplasm {ECO:0000250}.
Interaction partners:
Sequence:
MIDSAAPPSGFCRDCLKEQAAHSRRCLACGSPRLLRHSELYRLTLAHIDCDAFYASVEKRDNPELADKPVIIGGGKRGVVSTACYIARIHGVRSAMPMFKALEACPQAVVIKPDMEKYVRVGREVRAMMQELTPLVQPLSIDEAFLDLSGTERLHHDPPARTLARFAKRVEQEIGITVSVGLSYCKFLAKVASDLQKPRGFSVIGQAEAADFLKAKPVTLIWGVGKAFAATLERDGIRAIGQLQTMEEADLMRRYGTMGRRLYRLSRGLDERSVEIDGEAKSVSSETTFNDDLARQEDLVAHLRGLSEQVAFRLRKSALAGQTVVLKLKTADFKTRTRNRRLESPTRLADRIFRTGLQLLEKEVDGTKYRLIGIGVSDLVDPDLADPPDLVDPQASRRAAAEDAINRLRDKFGKTSVETGYTFGKGRRGQ
Protein: Putative efflux system component YknX (O31710)
Organism: Bacillus subtilis (strain 168)
Function: Part of an unusual four-component transporter, which is required for protection against the killing factor SdpC (sporulation-delaying protein).
Subcellular location: Cell membrane {ECO:0000269|PubMed:22707703}; Single-pass membrane protein {ECO:0000255}.
Interaction partners:
- Uncharacterized ABC transporter ATP-binding protein YknY
- Uncharacterized ABC transporter permease YknZ
- Membrane protein YknW
- Uncharacterized ABC transporter permease YvrN
- Uncharacterized ABC transporter ATP-binding protein YvrO
- Sporulation delaying protein C
- Swarming motility protein SwrC
- CCA-adding enzyme
Sequence:
MKKVWIGIGIAVIVALFVGINIYRSAAPTSGSAGKEVQTGSVEENEISSTVMVPGTLKFSNEQYVFYEADKGTLEDIKVKEGDKVKKGTALVTYTNEQLSLEKEQNQLTSESNRLQIDQIQEKLKALDSKERELEKQVGKKEAEKQIESERTELQMQKKTAEIELKQTELQRQSLANRVSDLEVKSEIEGTVISVNQEAASKKSDIQEPVIHIGNPKDLVVSGKLSEYDTLKVKKGQKVTLTSDVIQGKTWKGTVSAVGLVPDQQESAAAQGTEQAVQYPLQVKIKGNLPEGKPGFKFIMNIETDKRKANTLPSKAVKKEDDQYYVYTVKDGKAKRVDVKIGEVTDDLTEIKEGLTQDDQVILNPSDQVTDGMEVKS