wanglab/gogpt-training-data huggingface dataset:
Protein: Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Ribonucleotide reductase R1 subunit) (O15909)
Organism: Trypanosoma brucei brucei
Function: Provides the precursors necessary for DNA synthesis. Catalyzes the rate limiting step in the de novo synthesis of deoxyribonucleotides by directly reducing ribonucleotides to the corresponding deoxyribonucleotides.
Interaction partners:
Sequence:
MLETVKLVTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAETAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALGIHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQCAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAPFLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKDGAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAMKELPKPDKQSKEEVHGSVGRGKRKRVGEKPTANHSNAGAPNLNGPPDTDGDGGCLNCGS
Protein: Erythrocyte membrane protein 1, PfEMP1 (Q8IK37)
Organism: Plasmodium falciparum (isolate 3D7)
Interaction partners:
Sequence:
MAAQSSGGGGGCGEEDKDAKYMFDRIGKEVHDEVKNAANVFKDYLKGNLTISTIFGEETVAFTDPCELIKEKRDELLAARGDPCGKGKEHRFSKERGAECDDNKIEGNVRSKGKGGKSAGACAPYRRLSLCNKNFPNMNSKDSLKAKNDLLVDVCYAAKYEAESLIPYHDQYKLTYGDSQICTVLARSFADIGDIVRGKDLFLGHNQRKKKLEERLEQMFKNITHSNAAKLSVLSSKEIREYWWALNRDQVWKALTCDEENKLGGNAYFHATCSERNGGCSQAHEKCRCPMTSDGKPNDQVPTYFDYVPQYLRWFEEWAEDFCRKKKIYVDIVKKYCRGERDGEKYCSLNGCDCTKTVRARGKLRYGNRCTDCLFACHRYENWIDNQRKQFLKQRNKYTEEINGTSTSSRTRRSARGGSDHKGYEKIFYEKLEGEYRTVDGFLELLNKEKACQEVKDSEGGKINFSEKHSGNSNDETKGTFYRSEYCQPCPYCGVRKTKGNQWENKSKNDQCNIKLYRPNPGESGTPIEILKSGEGETEIENKLNAFCAQTKNGSVVGGGSGGGNSDSKELYDEWQCYEFKQLTTDGQEDDDDEDYDKDVRTGGGLCILEKKKEEGEAKSQNEPDEIQKTYNDFFYYWVAHMLKDSIHWRTKKLDKCINNTNKSKACKNSNKCNNDCGCFQKWVDQKKEKEWDAIKQQFRKQKDIGDETNCDPIVTLEGVLQIEFLKGDSEDSSEEKSENSLDAKEIQHLRQMLKQAGVAIGLDAFVALRGRCTEGGADSQNKTTIDKLLDEEAKEAKDCQSKHKDPCPKPQDGVAGRSAEHPEEQEEEEEDDDEEIEEKSEENDEESEKTVEDKETEAENVAEVPPTTQDNAEKPCDIVAELFKKPDTLKQACPTKYGSKAPTSWKCIPTKPNSDSSTTGGGSDTGVPTTKSGATGKSGGSDTGSVCIPPRRRKLYVGELTKWAESKQVAQAQTTDTQTQVDAASTSTSQTSLLRDAFIQSAAVETFFLWHRYKKEWELRQKEAEQGQSGLPGIGVPGAGIPVVPGAGIPGVVGANGLSQPVLGVDNDNPQTSLQNGTIPTDFLRQMFYTLGDYRDILFSGSNDTTSGSKDTSSGSNDNLKHIVLNAGGDQKSKDEMQTIQTAISSYFSNSGKPSTSVTPVTQPSGTTPQALWSKYAESIWNGMVCALTYRDSGDKGGKPQKVEAANGKLFQQLKDKYGEYDKVKLEEEDSENQAKGSSSQHPENPSTTSENKPTHLTDFISRPPYFRYLEEWGQNFCKKRTEMLGKIKDNCTEDGGKTKKCSGDGHDCTDGKRRYNNMFDDLDCRPCYEQCRKYRKWIDIKFVEYQNQKNKYGEEHEKLKTNSNGDNNCCTEIKEKTSAADFLKALKHCKDGQTGGEKNKTHFENPETTFGPLDYCKTCPPNKVSCNVIRGRSGGRNGCNVKDNEDKWKEVFDGISGNGGKSSTIEVEMIDRRGPYMKEYMKENSKNPFKTSRLFKGIRKEQWECKVTNDDMHICKLDQFKENINLNPYTTFKVLLHYWLEDFLYGYYISKKKIEKCTQKEKNACDEETKKNCVCVKTWVEQKKKEWKEIKKHFKNREQKYGQGNDIKSKVKMFLETLIPLMDLVNNKGKHESLDAFLKSYECKCAESSGKKGGKENNIVLCLLDMLEKKATPCLSSTSDSSETPCENTPTTLDDDDPLEEENPVIHPQICGDIPTTKETVDEDACKRAEEPPKEPAPTGPKKPAPTAGGEEDQTEKDTEVNPLAPAPADETFDPTILQTTIPLGIALALGSIAFLFLKKKTKASVGNLFQILQIPKSDYDIPTKLSPNRYIPYTSGKYRGKRYIYLEGDSGTDSGYTDHYSDITSSSESEYEEFDINDIYVPGSPKYKTLIEVVLEPSGNNTTASGNNTTASGNNTTASGNNTTASGNNTTASDTQNDIQNDGIPSSKITDNEWNTLKDEFISQYLQSEQPKDVPNDYKSGNSSTNTNITTTSRDNMEEKPFIMSIHDRDLYSGEEYSYNVNMSTNSMDDPKYVSNNVYSGIDLINDSLNSNNVDIYDEVLKRKENELFGTNHVKQTSIHSVAKLTNSDPIHNQLELFHTWLDRHRDMCEKWNNKEEVLDKLKEEWENDTSTSGNTHPSDSNKTLNTDVSIQIHMDNPKPINQFNNMDTILEDLDKPFNEPYYYDMYDDDIYYDVNDDNDTSTVDSNNMDVPSKVQIEMDVNTKLVKEKYPISDVWDI
Protein: Type IV major pilin protein PilA (Pilin) (P04739)
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Function: Major component of the type IV pilus (T4P) that plays a role in surface and host cell adhesion, colonization, biofilm maturation, virulence, and twitching, a form of surface-associated motility facilitated by cycles of extension, adhesion, and retraction of T4P fibers. In addition, plays a critical role in type II secretion of exoenzymes by interacting with specific components such as XcpT or XcpU. Modulates host calcium signaling through interaction with host calcium-modulating cyclophilin ligand.
Subcellular location: Fimbrium {ECO:0000269|PubMed:39666767}. Cell inner membrane {ECO:0000269|PubMed:27162347}; Single-pass membrane protein {ECO:0000255}. Host endoplasmic reticulum membrane {ECO:0000269|PubMed:23266901}. Note=Likely secreted through the outer membrane PilQ secretin channel for surface display. {ECO:0000305|PubMed:39666767}.
Interaction partners:
- Type IV pilus assembly ATPase PilB
- Prepilin leader peptidase/N-methyltransferase
- Type IV pilus retractation ATPase PilT
- Fimbrial assembly protein PilQ
- Type IV pilus inner membrane component PilM
- Type IV pilus ATPase PilU
- Type IV pilus inner membrane component PilO
- High-affinity zinc uptake system protein ZnuA
- Type 4 fimbrial biogenesis protein PilW
- Type 4 fimbrial biogenesis protein PilX
Sequence:
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALATINPLKTTVEESLSRGIAGSKIKIGTTASTATETYVGVEPDANKLGVIAVAIEDSGAGDITFTFQTGTSSPKNATKVITLNRTADGVWACKSTQDPMFTPKGCDN
Protein: U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA-processing factor 31) (Serologically defined breast cancer antigen NY-BR-99) (U4/U6 snRNP 61 kDa protein) (Protein 61K) (hPrp31) (Q8WWY3)
Organism: Homo sapiens (Human)
Function: Involved in pre-mRNA splicing as component of the spliceosome. Required for the assembly of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome.
Subcellular location: Nucleus {ECO:0000269|PubMed:12444105, ECO:0000269|PubMed:26912367, ECO:0000269|PubMed:28781166, ECO:0000269|PubMed:34023904}. Nucleus speckle {ECO:0000269|PubMed:11867543}. Nucleus, Cajal body {ECO:0000269|PubMed:11867543}. Note=Predominantly found in speckles and in Cajal bodies. {ECO:0000269|PubMed:11867543}.
Interaction partners:
- Pre-mRNA-processing factor 6
- Small nuclear ribonucleoprotein E
- U4/U6.U5 tri-snRNP-associated protein 1
- Peptidyl-prolyl cis-trans isomerase H
- U4/U6 small nuclear ribonucleoprotein Prp4
- Small nuclear ribonucleoprotein F
- U5 small nuclear ribonucleoprotein 200 kDa helicase
- NHP2-like protein 1
- 116 kDa U5 small nuclear ribonucleoprotein component
- U6 snRNA-associated Sm-like protein LSm2
Sequence:
MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVKGEKSGLMST
Protein: Small GTP-binding rab protein, putative (Q57Y26)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
- 60S ribosomal protein L39, putative
- Rab GDP dissociation inhibitor
Sequence:
MRPEFPGLVEAATETECTEASTEPEDEQWEDEEQMFVFKVAIVGDYSVGKTSMVKRLLDIPYEKIASSSSAPQPPGSSREGEVVSNSLQPLHTTTPTVGTDFFSRVVRNVRAGQHVRLQLWDTAGLERYASVDKSTFRCASAAIVVFDVKNRESFAHVTSQHLDLVMRYNPDISGRHIFVVGNKVDLIDNTEVEDMDRLVTQHELQFELFSAFPDVQYYEVSTLTNYGLREMLHGLCHTLLNDHTTCEEGNIKENGPTPAERGPLHSHLPLNFDTGTTMDGETGTDGTLFTTDGVMASAPSLYSLGSMVTVRSAQIAESGWFTPRERGSEGDTCACDKYMTEEVKESPTHGPSGTDTTLVAEDVDGHEETACSHMHMDPTALLSCKEEERDITLYSVCSALESGVVDNSVAEASNGSGSIDALNMGDETGVESTRQQTSAAPPSVENTARFVGGSQRLHNSMSMDSYFGSLSHSWAATGRNANAISSDDHPEASSHRRRIDDMLRRIDRDAELENSPESRHVAEDVDYGATPVDHGNEKPSKVNLSSCSCFGSKGDRSKRSGC
Protein: Low affinity immunoglobulin gamma Fc region receptor II (Fc-gamma RII) (FcRII) (IgG Fc receptor II beta) (CD antigen CD32) (Q63203)
Organism: Rattus norvegicus (Rat)
Function: Binds to the Fc region of immunoglobulins gamma. Low affinity receptor. By binding to IgG it initiates cellular responses against pathogens and soluble antigens.
Subcellular location: Cell membrane; Single-pass type I membrane protein.
Interaction partners:
- T-cell surface glycoprotein CD4
- Integrin alpha-D
- CD19 molecule
- Galectin-3
- Receptor-type tyrosine-protein phosphatase C
- Tyrosine-protein kinase Lyn
- T-lymphocyte activation antigen CD86
- Fc fragment of IgG receptor Ia.
- Ig gamma-1 chain C region
- Serum amyloid P-component
Sequence:
MDSNRTVVHVLSRTLYHMLLWTAVLNLVAESHAGLPKAVVKLEPPWIQVLKEDTVTLMCEGTHNTKNCSTQWFHNGSSIWHQAQANYTFKATVNDSGEYRCRMEETGISEPIHLGVISDWLLLQTSQLVFEEGETITLRCHSWKNKQLTKVLLFQNGKPVRYYHQSSNFSIPKANHSHSGNYYCKAYLGRTMHVSKPVTITVQEPKSSSSLPVLTIVAAVAGIAVAAIVIILVSLVYLKKKQVPDTPSGLEEAEKNEVENTITYSLLKHPEAPDEESDHDYQNHI
Protein: Pyruvate, phosphate dikinase 1, chloroplastic (EC 2.7.9.1) (Pyruvate, orthophosphate dikinase 1) (O23404)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Formation of phosphoenolpyruvate. May be involved in regulating the flux of carbon into starch and fatty acids of seeds and in the remobilization of nitrogen reserves in senescing leaves.
Subcellular location: Plastid, chloroplast {ECO:0000269|PubMed:16915520}. Cytoplasm {ECO:0000269|PubMed:16915520}. Note=Isoform 1 is targeted to the chloroplast while isoform 2 is found in the cytoplasm.
Interaction partners:
- Phosphoenolpyruvate carboxylase 3
- Phosphoenolpyruvate carboxylase 2
- Phosphoenolpyruvate carboxylase 1
- Phosphoenolpyruvate carboxylase 4
- NAD-dependent malic enzyme 2, mitochondrial
- NAD-dependent malic enzyme 1, mitochondrial
- Phosphoenolpyruvate carboxykinase 1
- phosphoenolpyruvate carboxykinase
- NADP-dependent malic enzyme 2
- Alanine aminotransferase 1, mitochondrial
Sequence:
MLYIRKKMTSMIVKTTPELFKGNGVFRTDHLGENRMVSRSNRLGDGSNRFPRTGTIHCQRLSIAKTGLHRETKARAILSPVSDPAASIAQKRVFTFGKGRSEGNKGMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQQYQIAGKKLPEGLWEEILEGLSFIERDIGASLADPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDQVVVGLAAKSGERFAYDSFRRFLDMFGDVVMGIPHAKFEEKLERMKERKGVKNDTDLSAADLKELVEQYKSVYLEAKGQEFPSDPKKQLELAIEAVFDSWDSPRANKYRSINQITGLKGTAVNIQCMVFGNMGDTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDTMKRFMPEAYAELVENCNILERHYKDMMDIEFTVQEERLWMLQCRAGKRTGKGAVKIAVDMVGEGLVEKSSAIKMVEPQHLDQLLHPQFHDPSGYREKVVAKGLPASPGAAVGQVVFTAEEAEAWHSQGKTVILVRTETSPDDVGGMHAAEGILTARGGMTSHAAVVARGWGKCCIAGCSEIRVDENHKVLLIGDLTINEGEWISMNGSTGEVILGKQALAPPALSPDLETFMSWADAIRRLKVMANADTPEDAIAARKNGAQGIGLCRTEHMFFGADRIKAVRKMIMAVTTEQRKASLDILLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLDNIVHELAEETGVKEDEVLSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAASMQDQGVTVIPEIMVPLVGTPQELGHQVDVIRKVAKKVFAEKGHTVSYKVGTMIEIPRAALIADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLAKGILQHDPFEVLDQQGVGQLIKMATEKGRAARPSLKVGICGEHGGDPSSVGFFAEAGLDYVSCSPFRVPIARLAAAQVVVA
Protein: Small ribosomal subunit protein uS12 (40S ribosomal protein S23) (Q6FLA8)
Organism: Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) (Yeast) (Nakaseomyces glabratus)
Interaction partners:
- Small ribosomal subunit protein uS10
- 40S ribosomal protein S12
- Candida glabrata strain CBS138 chromosome K complete sequence
- Small ribosomal subunit protein uS9
- Small ribosomal subunit protein uS2
- Large ribosomal subunit protein uL5
- L37
- Large ribosomal subunit protein eL38
- 60S ribosomal protein L6
- 40S ribosomal protein S30
Sequence:
MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS
Protein: Glucose transporter 1A (Q9I8M1)
Organism: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
Sequence:
MDSGGKQVTFQLMLTVGAAVIGSLQFGYNTGVINAPQKVIERFLNETWFDRYQEPISKTSLTTLWSVSVAIFSVGGIFGSFSVGLFVNRFGRRNSMLMANVLAFVSAALMGFSKMGGSWEMLIIGRFVVGLYSGLSTGFVPMYVGEVAPTALRGALGTLHQLGIVTGILMAQVFGMEALMGNASLWPFLLGFTFIPALAQCALLPFCPESPGFLLINRNEENKAKTVLKKLRGTTDVSADMQEMKEEARQMMREKKVTILELFRSPLYRQPIFIAIMLQLSQQLSGINAVFYYSTRIFEKAGVAQPVYATIGAGVVNTAFTVVSLFVVERAGRRSLHLLGLIGMAGAAVLMTIALALLDKLPWMSYVSIVAIFAFVAFFEIGPGPIPWFIVAELFSQGPPPSAFAVAGFSNWTANFIVGMAFQYVEELCGPYVFVIFTILLLSFFIFTYFKVPETKGRTFDEISAGFRQSSGTGGEKHSPEELNSLGADSQL
Protein: Desmoglein-2 (Cadherin family member 5) (HDGC) (Q14126)
Organism: Homo sapiens (Human)
Function: Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
Subcellular location: Cell membrane {ECO:0000269|PubMed:27338829, ECO:0000269|PubMed:31402609}; Single-pass type I membrane protein. Cell junction, desmosome {ECO:0000269|PubMed:20859650, ECO:0000269|PubMed:25208567, ECO:0000269|PubMed:29999492, ECO:0000269|PubMed:31402609, ECO:0000269|PubMed:33596089}. Cytoplasm {ECO:0000269|PubMed:27338829}.
Interaction partners:
- Plakophilin-2
- Desmocollin-2
- Desmoplakin
- Junction plakoglobin
- Desmocollin-3
- Plakophilin-3
- Transmembrane protein 43
- Plakophilin-1
- Gap junction alpha-1 protein
- Desmoglein-3
Sequence:
MARSPGRAYALLLLLICFNVGSGLHLQVLSTRNENKLLPKHPHLVRQKRAWITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQDVFVGSVEELSAAHTLVMKINATDADEPNTLNSKISYRIVSLEPAYPPVFYLNKDTGEIYTTSVTLDREEHSSYTLTVEARDGNGEVTDKPVKQAQVQIRILDVNDNIPVVENKVLEGMVEENQVNVEVTRIKVFDADEIGSDNWLANFTFASGNEGGYFHIETDAQTNEGIVTLIKEVDYEEMKNLDFSVIVANKAAFHKSIRSKYKPTPIPIKVKVKNVKEGIHFKSSVISIYVSESMDRSSKGQIIGNFQAFDEDTGLPAHARYVKLEDRDNWISVDSVTSEIKLAKLPDFESRYVQNGTYTVKIVAISEDYPRKTITGTVLINVEDINDNCPTLIEPVQTICHDAEYVNVTAEDLDGHPNSGPFSFSVIDKPPGMAEKWKIARQESTSVLLQQSEKKLGRSEIQFLISDNQGFSCPEKQVLTLTVCECLHGSGCREAQHDSYVGLGPAAIALMILAFLLLLLVPLLLLMCHCGKGAKGFTPIPGTIEMLHPWNNEGAPPEDKVVPSFLPVDQGGSLVGRNGVGGMAKEATMKGSSSASIVKGQHEMSEMDGRWEEHRSLLSGRATQFTGATGAIMTTETTKTARATGASRDMAGAQAAAVALNEEFLRNYFTDKAASYTEEDENHTAKDCLLVYSQEETESLNASIGCCSFIEGELDDRFLDDLGLKFKTLAEVCLGQKIDINKEIEQRQKPATETSMNTASHSLCEQTMVNSENTYSSGSSFPVPKSLQEANAEKVTQEIVTERSVSSRQAQKVATPLPDPMASRNVIATETSYVTGSTMPPTTVILGPSQPQSLIVTERVYAPASTLVDQPYANEGTVVVTERVIQPHGGGSNPLEGTQHLQDVPYVMVRERESFLAPSSGVQPTLAMPNIAVGQNVTVTERVLAPASTLQSSYQIPTENSMTARNTTVSGAGVPGPLPDFGLEESGHSNSTITTSSTRVTKHSTVQHSYS
Protein: Phycobiliprotein ApcE (EC 4.-.-.-) (Phycobilisome LCM core-membrane linker polypeptide) (Phycobilisome core-membrane linker phycobiliprotein ApcE) (Q55544)
Organism: Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity (By similarity).
Subcellular location: Cellular thylakoid membrane {ECO:0000250}; Peripheral membrane protein {ECO:0000250}; Cytoplasmic side {ECO:0000250}. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane. {ECO:0000250}.
Interaction partners:
- Allophycocyanin subunit beta-18
- Allophycocyanin subunit alpha-B
- Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
- C-phycocyanin beta subunit
- C-phycocyanin alpha subunit
- Allophycocyanin beta chain
- Allophycocyanin alpha chain
- Phycobilisome rod-core linker polypeptide CpcG
- Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod
- Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 1
Sequence:
MSVKASGGSSLARPQLYQTVPVSAISQAEQQDRFLEGSELNELTAYFQSGALRLEIAETLTQNADLIVSRAANRIFTGGSPLSYLEKPVERQPALVGASSDSRNGSVTYAESNGSGGLFGGLRSVFSSTGPIPPGFRPINIARYGPSNMQKSLRDMSWFLRYTTYAIVAGDPNIIVVNTRGLKEVIENACSIDATIVAIQEMRAASADYFRNNAQAKEIVLQYFDILLSEFKAPTPANKVRQGPSNDIQGLELPQSYFNAAAKRQKYAMKPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAKSPLYRKQFFEPFINSRALELAFRHILGRGPSSREEVQKYFSIVSSGGLPALVDALVDSQEYADYFGEETVPYLRGLGVEAQECRNWGMQQDLFSYSAPFRKVPQFITTFAQYDRPLPDQHVYGSGNDPLEIQFGAIFPKETRNPSKRPAPFNKDTKRILIHRGPAVNNQVGNPSAVGEFPGSLGAKVFRLNGGLPGAKVGKNTGTSVKFGESSTQALIRAAYRQVFGRDLYEGQRLSVAEIQLENGDISVREFIKRLAKSELFLKLYWAPHYVCKAIEYMHRRLLGRPTYGRQEMNQYFDIASKQGFYAVVEAMIDSKEYSDAFGEDTVPYERYLTPGGLQMRSARVGSLREDIGQRVDKEVTPRFVELGQVSAIRTEPEIAYRSNQGVTRQRQQTKVFKLVSTYDKVAVKNAIRAAYRQVFERDLEPYIINSEFTALESKLSNNEINVKEFIEGLGTSELYMKEFYAPYPNTKVIEMGTKHFLGRAPLNQKEIQQYNQILASQGLKAFIGAMVNGMEYLQTFGEDTVPYRRFPTLPAANFPNTERLYNKLTKQDKELVVPSFTPVVKVGG
Protein: Probable G-protein coupled receptor 139 (G(q)-coupled orphan receptor GPRg1) (G-protein-coupled receptor PGR3) (Q80UC8)
Organism: Mus musculus (Mouse)
Function: Orphan receptor. Seems to act through a G(q/11)-mediated pathway.
Subcellular location: Cell membrane; Multi-pass membrane protein.
Interaction partners:
- Probable G-protein coupled receptor 149
Sequence:
MEHTHAHLAANSSACGLGFVPVVYYSFLLCLGLPANILTVIILSQLVARRQKSSYNYLLALAAADILVLFFIVFVDFLLEDFILTMQMPLIPDKIIEVLEFSSIHTSIWITVPLTVDRYIAVCHPLKYHTVSYPARTRKVILSVYITCFLTSIPYYWWPNIWTEDYISTSMHHVLVWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAILFTITSIFATLWAPRIIMILYHLYGAPIQNPWLVHIMLDVANMLALLNTAINFFLYCFISKRFRTMAAATLKALFKCQKQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKHGKPIKVSP
Protein: Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 (UDP-GlcA:xylan glucuronyltransferase 3) (EC 2.4.1.-) (Glycogenin-like protein 3) (Plant glycogenin-like starch initiation protein 2) (Protein GLUCURONIC ACID SUBSTITUTION OF XYLAN 3) (AtGUX3) (Q8W4A7)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: May be involved in the substitutions of the xylan backbone in stem glucuronoxylan.
Subcellular location: Golgi apparatus membrane {ECO:0000305|PubMed:20852069}; Single-pass type II membrane protein {ECO:0000305|PubMed:20852069}.
Interaction partners:
- Filament-like protein
- Haloacid dehalogenase-like hydrolase
- C2 domain-containing protein At1g53590
- Transmembrane protein, putative
- Probable beta-1,4-xylosyltransferase IRX10L
- Probable beta-1,4-xylosyltransferase IRX9H
- Xylan O-acetyltransferase 1
- Probable beta-1,4-xylosyltransferase IRX14H
- Protein NETWORKED 2D
- At3g45160
Sequence:
MIPSSSPMESRHRLSFSNEKTSRRRFQRIEKGVKFNTLKLVLICIMLGALFTIYRFRYPPLQIPEIPTSFGLTTDPRYVATAEINWNHMSNLVEKHVFGRSEYQGIGLINLNDNEIDRFKEVTKSDCDHVALHLDYAAKNITWESLYPEWIDEVEEFEVPTCPSLPLIQIPGKPRIDLVIAKLPCDKSGKWSRDVARLHLQLAAARVAASSKGLHNVHVILVSDCFPIPNLFTGQELVARQGNIWLYKPNLHQLRQKLQLPVGSCELSVPLQAKDNFYSAGAKKEAYATILHSAQFYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHKSGLVAAGWKIQMFQRIRNPNAVPNAYNEWNYSKFRLWQLTEYSKIIFIDADMLILRNIDFLFEFPEISATGNNATLFNSGLMVVEPSNSTFQLLMDNINEVVSYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEPEIKKMKTSLFGADPPILYVLHYLGYNKPWLCFRDYDCNWNVDIFQEFASDEAHKTWWRVHDAMPENLHKFCLLRSKQKAQLEWDRRQAEKGNYKDGHWKIKIKDKRLKTCFEDFCFWESMLWHWGETNSTNNSSTTTTSSPPHKTALPSL
Protein: Glucosidase 2 subunit beta (Alpha-glucosidase 2 subunit beta) (Q9USH8)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins in the endoplasmic reticulum (ER). Specifically required for the cleavage of the final glucose. The subunit beta retains the catalytic subunit alpha in the ER.
Subcellular location: Endoplasmic reticulum {ECO:0000269|PubMed:16823372}.
Interaction partners:
- Glucosidase 2 subunit alpha
- Putative mannose 6-phosphate receptor-like protein C530.09c
- UDP-glucose:glycoprotein glucosyltransferase
- Calnexin homolog
- Protein OS-9 homolog
- Uncharacterized family 31 glucosidase C1039.11c
- Alpha-glucosidase
- Uncharacterized family 31 glucosidase C30D11.01c
Sequence:
MKFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCPNTCAQKAREYLATLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLSLVDERNEMQERLDILTNLLDELTLLYETDKFDETMKEAILSFEDLKEQEIRRKVSSDDVHNYLESCNNHLSMLTGPSEDITFSSLIKDIKKILNSLVWNIKLSLINFGILSPSASSTPLTDSESYRRFEAAQRDLDAAEENEKSLEKEHTKLMHELEYHHGWDLYRAIKGMETKREIGGYTYKVVFYENVFQDSILLGNFASQEGNVLKYENGQSCWNGPHRSAIVTVECGVENEIVSVLEAQKCEYLIKMKSPAACSPDQLKQSLLNTQNSANENAVNGMEDKESSVDEL
Protein: Histidine-rich protein III (C0H5M9)
Organism: Plasmodium falciparum (isolate 3D7)
Interaction partners:
Sequence:
MVSFSKNKILSAAVFASVLLLDNNNSEFNNNLFSKNAKGLNSNKRLLHESQAHAGDAHHAHHVADAHHAHHVADAHHAHHVADAHHAHHVADAHHAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAADANHGFHFNLHDNNSHTLHHAKANACFDDSHHDDAHHDGAHHDDAHHDGAHHDDAHHDGAHHDDAHHDGAHHDDAHHDGAHHDGAHHDGAHHDGAHHNATTHHLHH
Protein: Putative ethanolamine phosphotransferase (EC 2.7.8.1) (Q4QDW1)
Organism: Leishmania major
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004370}.
Interaction partners:
Sequence:
MCEEAMQSWISPAAPPGTPSLSADPSIMAEYLFFPFYDYVVQFYPQSWVPNKVTLVGIFSTISASVLLLSSMPAGLQFQSGRMQLLPASLVEDAAMLQMPPLSPTQMTPILSFISPNLMLILCGSLNVLYCVADNTDGRLARRDKKTSVIGEYLDHGLDCVTSLLSTCCVFALVGSLCNMVTSVCLIAFVTVLCHTLHFEKNIFIWGNRIATVDEAMILFGVSMWLPLICPTVSTATVPGWILESIFGPNSSWTAYLRRLRMIELLYVFCSVAQTHTIFSMARRCWSMLCRIHVIFSVLNSVLLVLLIGVHSEHIAAAAPATSVPGYTLGPFTYPALWIITTACTSSTIIHIPIVARCARLPTTDPLPLAGVMLVWFAFVSCPVAGAILAVVLHVGQLLLNVDFIQRHARRKGAE
Protein: Alpha-galactosidase C (EC 3.2.1.22) (Melibiase) (Q9UUZ4)
Organism: Aspergillus niger
Function: Involved in galactomannan degradation.
Interaction partners:
Sequence:
MIGSSHAVVALGLFTLYGHSAAAPAIGASNSQTIVTNGTSFALNGDNVSYRFHVNSSTGDLISDHFGGVVSGTIPSPVEPAVNGWVGMPGRIRREFPDQGRGDFRIPAVRIRESAGYTVSDLQYVSHEVIEGKYALPGLPATFGDAQDATTLVVHLYDNYSSVAADLSYSIFPKYDAIVRSVNVTNQGPGNITIEALASISIDFPYEDLDMVSLRGDWAREANVQRSKVQYGVQGFGSSTGYSSHLHNPFLAIVDPATTESQGEAWGFNLVYTGSFSAQVEKGSQGFTRALLGFNPDQLSWNLGPGETLTSPECVAVYSDKGLGSVSRKFHRLYRNHLMKSKFATSDRPVLLNSWEGVYFDYNQSSIETLAEESAALGVHLFVMDDGWFGDKYPRVSDNAGLGDWMPNPARFPDGLTPVVQDITNLTVNGTESTKLRFGIWVEPEMVNPNSTLYHEHPEWALHAGPYPRTERRNQLVLNLALPAVQDFIIDFMTNLLQDTGISYVKWDNNRGIHETPSPSTDHQYMLGLYRVFDTLTTRFPDVLWEGCASGGGRFDAGMLQYVPQIWTSDNTDAIDRITIQFGTSLAYPPSAMGAHLSAVPNAQTGRTVPFTFRAHVAMMGGSFGLELDPATVEGDEIVPELLALAEKVNPIILNGDLYRLRLPQDSQWPAALFVSQDGAQAVLFYFQVQPNVNHAVPWVRLQGLDPKADYTVDGDQTYSGATLMNLGLQYSFDTEYGSKVVFLERQ
Protein: Inner membrane protein YebZ (P76278)
Organism: Escherichia coli (strain K12)
Subcellular location: Cell inner membrane; Multi-pass membrane protein.
Interaction partners:
- Protein YobA
- Uncharacterized protein YebY
Sequence:
MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF
Protein: Phytosulfokine receptor 1 (DcPSKR1) (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase 1) (Q8LPB4)
Organism: Daucus carota (Wild carrot)
Function: Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.
Subcellular location: Cell membrane; Single-pass type I membrane protein.
Interaction partners:
Sequence:
MGVLRVYVILILVGFCVQIVVVNSQNLTCNSNDLKALEGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNLTHNSLSGSIAASLLNLSNLEVLDLSSNDFSGLFPSLINLPSLRVLNVYENSFHGLIPASLCNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRSLSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKENAVEEPSPDFPFFKKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPCHITDQSPHGSAVKSKKNIRKIVAVAVGTGLGTVFLLTVTLLIILRTTSRGEVDPEKKADADEIELGSRSVVLFHNKDSNNELSLDDILKSTSSFNQANIIGCGGFGLVYKATLPDGTKVAIKRLSGDTGQMDREFQAEVETLSRAQHPNLVHLLGYCNYKNDKLLIYSYMDNGSLDYWLHEKVDGPPSLDWKTRLRIARGAAEGLAYLHQSCEPHILHRDIKSSNILLSDTFVAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGRRPMDVCKPRGSRDLISWVLQMKTEKRESEIFDPFIYDKDHAEEMLLVLEIACRCLGENPKTRPTTQQLVSWLENIDVSS