wanglab/gogpt-training-data huggingface dataset:
Protein: Histone deacetylase complex subunit SAP18 (18 kDa Sin3-associated polypeptide) (O64644)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Links the histone deacetylase complex to transcriptional repressors bound to chromatin. Involved in the tethering of the SIN3 complex to core histone proteins.
Interaction partners:
- SAP domain-containing protein
- Protein-protein interaction regulator family protein
- Histone deacetylase 19
- Serine/arginine-rich splicing factor SR45
- Protein mago nashi homolog
- RNA-binding protein Y14
- THO complex subunit 4C
- THO complex subunit 4A
- THO complex subunit 4D
- THO complex subunit 4B
Sequence:
MAEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAIY
Protein: Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1) (EC 2.7.7.18) (Q8T405)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MSAFIEETKSLLPRIAFIACGCFSPPTPMHLRMFEIAKDHFEMQGTHRVVGGIISPTHDSYGKKGLASALDRCAMVKLATQSSNWIRLSDWEVHQNQWMRTQAVLQHHQNYINNHINSGGGGGDDGENTHLPGWLPRGLHDSRDPVHLKLLCGADLLESFAVPGLWAEADIEDIVANHGLVVITRAGSNPGKFIFDSDILTKYQSNITLITNWVPNEVSSTLIRRLLGRGQSVKYLLDDLVLEYIKRQRLFNFKSRDAPAPTECDS
Protein: AN1-type zinc finger protein 3 (Zgc:110105) (Zinc finger, AN1-type domain 3) (Q4KMI6)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Interaction partners:
- C2 calcium-dependent domain-containing 4A.
- Pleiomorphic adenoma gene X
- Zinc finger protein 341
- Si:dkey-256k13.2
- Diacylglycerol kinase.
Sequence:
MGDTGSERSKPPSIPPRCPCGFWGSSKTMNLCSKCFADIQKKQPDEDCTPEPAPSSSNSQSAVFCNETSSSSSQTLSSKPASSEEPSTEATPLPAQDEVSSTDTARGTLSTPTKRPCDSASGSESESSPEKRVRVGEASCSEDSPRVPKQKNRRRCHRCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCMFDHLGRGREEAVLKMVKLDRKVGRTCQRIGEECS
Protein: Eukaryotic initiation factor 4A (EC 3.6.4.13) (ATP-dependent RNA helicase eIF4A) (Q02748)
Organism: Drosophila melanogaster (Fruit fly)
Function: ATP-dependent RNA helicase which is a subunit of the eIF4F complex involved in cap recognition and is required for mRNA binding to ribosome. In the current model of translation initiation, eIF4A unwinds RNA secondary structures in the 5'-UTR of mRNAs which is necessary to allow efficient binding of the small ribosomal subunit, and subsequent scanning for the initiator codon. Involved in germ cell formation.
Subcellular location: Cytoplasm {ECO:0000269|PubMed:18590813}. Cytoplasm, Cytoplasmic ribonucleoprotein granule {ECO:0000269|PubMed:18590813}. Note=Component of the meiotic nuage (also known as germline granule or P granule), a germline-specific membraneless ribonucleoprotein biocondensate involved in post-transcriptional regulation of transposons and mRNAs. {ECO:0000269|PubMed:18590813}.
Interaction partners:
- Polyadenylate-binding protein
- Eukaryotic translation initiation factor 4E1
- Eukaryotic initiation factor 4B
- eIF-4F 25 kDa subunit
- eIF-4F 25 kDa subunit
- eIF-4F 25 kDa subunit
- eIF-4F 25 kDa subunit
- eIF-4F 25 kDa subunit
- Eukaryotic translation initiation factor 4G1, isoform B
- Eukaryotic translation initiation factor 4 gamma 2
Sequence:
MDDRNEIPQDGPASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI
Protein: Organelle RRM domain-containing protein 1, chloroplastic (ZmORRM1) (C0HFE5)
Organism: Zea mays (Maize)
Function: Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.
Subcellular location: Plastid, chloroplast {ECO:0000255}.
Interaction partners:
- RanBP2-type zinc finger protein
- RanBP2-type zinc finger protein
- RanBP2-type zinc finger protein
- RanBP2-type zinc finger protein
- TATA-binding protein-associated factor BTAF1
- DNA-directed RNA polymerase subunit beta
Sequence:
MDTALPSVLIGGGLSVSVSISTATKAGSQSISSHLSTSSLRLTARHRNRRRLPLLASSSESPPAQLAAASTESQSRSSRWVVVMDTPPAAAGGSGVSRAEAVDYYAATLAQVVGSEKEAQMRICEASWDGTYEFRCEIDEDASKELAKMPGVLSVQLDMGNKSEKDNHSLSLSTANLVSISDGASTSSSGKNEFWLVRMEKPGVEVVTKAQMVDHYTQILMKVLGNEQDAQVSIYHVSWDRDYGFCCHIDEECAKELADVPGVLSVQPDTNFGSDNKNYKGDDGVKSSEGTGAVDIKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQIINGWMIVVDVAKTRSRDRLSGGSNQAFRPHYQAR
Protein: Homeodomain protein (Q9YHC2)
Organism: Gallus gallus (Chicken)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
Interaction partners:
Sequence:
PPWRDARIGCAPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASDNEDDDDDYNKPLDPNSDDEKIAQLLKKHKPGAGGLLPHPAEGEASA
Protein: HSF-type DNA-binding domain-containing protein (I1LGH5)
Organism: Glycine max (Soybean) (Glycine hispida)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Interaction partners:
Sequence:
MAPLPAEQTGESAPTELQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERALLRDIQRRKLLPVPPAAAAPAAVTANTVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIAGNNNNNTVHRTTSCTTAPELLEENERLRKENIQLSNELSQLKGLCNNILSLMTNYASGFSRQQLESSTSAVRTVPVPDGKAPLELLPAKHVSSADDALHVGGAAGAAACATGNAAEAEVPKLFGVSIGLKRCRTECEAEPEGEDQNQMQTRAQTQSQSSQEPDHGSDVKSEPLDGDDSDYQDHDPHWLEL
Protein: V-type proton ATPase catalytic subunit A (EC 7.1.2.2) (V-ATPase 69 kDa subunit) (Vacuolar proton pump subunit alpha) (C9JVW8)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MDFSKLPKILDEDKESTFGYVHGVSGPVVTACDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELGPGIMGAIFDGIQRPLSDISSQTQSIYIPRGVNVSALSRDIKWDFTPCKNLRVGSHITGGDIYGIVSENSLIKHKIMLPPRNRGTVTYIAPPGNYDTSDVVLELEFEGVKEKFTMVQVWPVRQVRPVTEKL
Protein: TBC1 domain family member 31 (H2LP95)
Organism: Oryzias latipes (Japanese rice fish) (Japanese killifish)
Function: Molecular adapter which is involved in cilium biogenesis. Part of a functional complex including OFD1 a centriolar protein involved in cilium assembly. Could regulate the cAMP-dependent phosphorylation of OFD1, and its subsequent ubiquitination by PJA2 which ultimately leads to its proteasomal degradation.
Subcellular location: Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000250|UniProtKB:Q96DN5}. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite {ECO:0000250|UniProtKB:Q96DN5}. Cytoplasm, cytoskeleton, cilium basal body {ECO:0000250|UniProtKB:Q96DN5}.
Interaction partners:
- SH3 domain-containing protein
- EH domain-containing protein
- SH3 domain-containing protein
- Intersectin 2a
- Intersectin 2b
- Dynactin 2
- Rab3 GTPase-activating protein catalytic subunit
Sequence:
MEVTDIGNKEEGKVWHRKPTPGKSVLASLVRTAQQGKVVRFLHVTFDTTGDCFLAGDHHGNIYLFDISRNRFRLVLKTGQACTALAFNLRRTTEFLVALADYSIRCFDKDTKQLVSWMRGHEGAVSSISVHSSGRYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVFFLPLSNTILSCFSDDSIFAWECDTLFCKYQLPLPDSGPRISYKAFAVTLDGKSLASGGRSNLLHLWCLESRQLVRVIQMPSQVRTIRQLEFLPDSFDGGASQTLGVLSQDGMMRFINIHTCKLLFHIGSHDEAITAVAVNPSGRHIVAVMDNGRINIYSVQNLTQELNKPPPAQVAVVSGSEGVPDLPNLKMKVRSEVLPRPKRISGRRPQVKLLSLPAASSAEDKENELPAGLNKKRLVALLKAFGEYPAKYRMFVWRSLLCLPENHAAYSSLTDKGLHSAFLTLHEKYPIKSQKLQRALQRVLSALAHWAAIFGEVEYLPLVAFPFVKLFQNNAMLCFEVVATVIENWCQHWFEYFPNPPLNILSMVENVVAHHDKELLQHLVDCGITSQLYVWPLLETLFSEVLTRDEWLRLFDNIFSNHPSFLLMACAAYIICCREPLLHCSQRQDFEYFFHHRNNLDVGAMIKEAYRFMSSTPADLHPRTMLSDFTPLTSGQYPVFNKYPEFIVEYQSRERERIRLQEMEYLRERQQMSALRADFVRRRAEEEAFYAQQELLQKAEEQRKHVLEQEEEKLTQQRAKLAAMKRELKVKELQLLDATRRRFLKHQQELQASQIKKLDQEISRKMDLRDKETATAVQDLEIRQMELEVQRKRLEQRLLKEQQHVGHKVEEEVRIKMKEAEENLKEMLHGAETNMQALEESLAEVCRLDLESDWQREVVERLQKADAERERSRGGVEELQRQTGTEEQGLVNAMREEAHRKKDEAAAQIQESLQPRPSTHSDGQRLMGIHSAYAPPGFAHRHACSAGLKGESLTDRNKSASFKQAETNMVCLNSSSPPESTSTAFSFCRGRTQLDSGERELLKEIRELRQKLAARAKEGSSASSQTVCTPTPVSP
Protein: ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) (Q6ENH7)
Organism: Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea)
Function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
Subcellular location: Plastid, chloroplast thylakoid membrane {ECO:0000255|HAMAP-Rule:MF_01346}; Peripheral membrane protein {ECO:0000255|HAMAP-Rule:MF_01346}.
Interaction partners:
- ATP synthase subunit a, chloroplastic
- ATP synthase epsilon chain, chloroplastic
- Uncharacterized protein
- ATP synthase CF0 subunit I
- ATP synthase subunit b, chloroplastic
- ATP synthase subunit c, chloroplastic
- ATP synthase subunit gamma, mitochondrial
- ATP synthase subunit beta, chloroplastic
- H
- ATP synthase subunit beta
Sequence:
MATLRVDEIHKILRERIEQYNRKVGIENIGRVVQVGDGIARIIGLGEIMSGELVEFAEGTRGIALNLESKNVGIVLMGDGLMIQEGSFVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIVASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQKGQDVICVYVAIGQRASSVAQVVTTFHEEGAMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQT
Protein: Ankyrin repeat and SAM domain-containing protein 3 (Q6ZW76)
Organism: Homo sapiens (Human)
Function: May be involved in vasopressin signaling in the kidney.
Subcellular location: Cell projection, cilium {ECO:0000250|UniProtKB:Q9CZK6}. Cytoplasm {ECO:0000250|UniProtKB:Q9CZK6}.
Interaction partners:
- Ankyrin repeat and SAM domain-containing protein 6
- Serine/threonine-protein kinase Nek7
- Serine/threonine-protein kinase Nek8
- Serine/threonine-protein kinase Nek9
- Protein bicaudal C homolog 1
- Serine/threonine-protein kinase Nek6
- Nephrocystin-1
- Nephrocystin-3
Sequence:
MSELSDEASEPELLNRSLSMWHGLGTQVSGEELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLLEAGVSVNVPTPEGQTPLMLASSCGNESIAYFLLQQGAELEMKDIQGWTALFHCTSAGHQHMVRFLLDSGANANVREPICGFTPLMEAAAAGHEIIVQYFLNHGVKVDARDHSGATARMLAKQYGHMKIVALMDTYSPSLPKSLYRSPEKYEDLSSSDESCPAPQRQRPCRKKGVSIHEGPRALARITGIGLGGRAPRPRYEQAPPRGYVTFNSSGENPLEEEGLCCRDVTSPINERDVESSSSSSSREEHAFCANLGPVQSSSSSEGLARAQGLSSEASVESNEDSDHACKSSARKQAKSYMKTKNPDSQWPPRAATDREGFLAESSPQTQRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPGDALELAYADRLEAEMQELAIQLHKRCEEVEATRGQVCQEQELRAVVESCLLEQDRAREDLQARLRETWALARDAALVLDQLRACQAELSSRVRQDQPPGAATLGLAVPPADSKGWQASLQAMSLPELSGALEDRVREMGQALCLVTQSLEKLQVLNGKKWRET
Protein: Chondroitin sulfate synthase 2 (EC 2.4.1.175) (EC 2.4.1.226) (Chondroitin glucuronyltransferase 2) (Chondroitin-polymerizing factor) (ChPF) (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (N-acetylgalactosaminyltransferase 2) (Q6IQX7)
Organism: Mus musculus (Mouse)
Function: Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronic acid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc) from UDP-GalNAc to the non-reducing end of the elongating chondroitin polymer. Seems to act as a specific activating factor for CHSY1 in chondroitin polymerization.
Subcellular location: [Isoform 1]: Golgi apparatus, Golgi stack membrane {ECO:0000250|UniProtKB:Q8IZ52}; Single-pass type II membrane protein {ECO:0000250|UniProtKB:Q8IZ52}. Cytoplasm, cytosol {ECO:0000250|UniProtKB:Q8IZ52}.; SUBCELLULAR LOCATION: [Isoform 3]: Cytoplasm, cytosol {ECO:0000250|UniProtKB:Q8IZ52}. Mitochondrion {ECO:0000250|UniProtKB:Q8IZ52}.; SUBCELLULAR LOCATION: [Isoform 2]: Mitochondrion matrix {ECO:0000250|UniProtKB:Q8IZ52}.
Interaction partners:
- Chondroitin sulfate synthase 1
- Chondroitin sulfate synthase 3
- Chondroitin sulfate N-acetylgalactosaminyltransferase 2
- Chondroitin sulfate N-acetylgalactosaminyltransferase 1
- Hexosyltransferase
Sequence:
MRASLLLSVLRPAGPVAVGISLGFTLSLLSVTWVEEPCGPGPPQPGDSELPPRGNTNAARRPNSVQPGSERERPGAGAGTGESWEPRVLPYHPAQPGQATKKAVRTRYISTELGIRQKLLVAVLTSQATLPTLGVAVNRTLGHRLEHVVFLTGARGRRTPSGMAVVALGEERPIGHLHLALRHLLEQHGDDFDWFFLVPDATYTEAHGLDRLAGHLSLASATHLYLGRPQDFIGGDTTPGRYCHGGFGVLLSRTLLQQLRPHLESCRNDIVSARPDEWLGRCILDATGVGCTGDHEGMHYNYLELSPGEPVQEGDPRFRSALTAHPVRDPVHMYQLHKAFARAELDRTYQEIQELQWEIQNTSRLAADGERASAWPVGIPAPSRPASRFEVLRWDYFTEQYAFSCADGSPRCPLRGADQADVADVLGTALEELNRRYQPALQLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRWPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLASGFLEAFATAALEPGDAAALTLLLLYEPRQAQRAAHSDVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAPPQGPGPPELGRDTGHFDRQAASEACFYNSDYVAARGRLVAASEQEEELLESLDVYELFLRFSNLHVLRAVEPALLQRYRAQPCSARLSEDLYHRCRQSVLEGLGSRTQLAMLLFEQEQGNST
Protein: Glutathione S transferase T3, isoform A (EC 1.11.1.9, EC 2.5.1.18) (Glutathione S transferase T3, isoform C) (Q9VRA4)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
Interaction partners:
Sequence:
MSAPIRYYYDLMSQPSRALFIIFRLSNMPFEDCVVALRNGEHLTEDFKKEINRFQRVPCIHDNGYKLAESVAILRYLSAKGKIPEHLYPKYFVDQSRVDEFLEWQHMSLRLTCAMYFRTVWLEPLLTGRTPSEAKIETFRMQMERNLDVVEEVWLEGKDFLTGSSLTVADIFAACEIEQTRMADYDVRIKYPKIRAWLKRVRQSCNPYYDVAHEFVYKISGTGPQAKL
Protein: CHE-2 protein (WD_REPEATS_REGION domain-containing protein) (G5EGF0)
Organism: Caenorhabditis elegans
Subcellular location: Cell projection, cilium {ECO:0000256|ARBA:ARBA00004138}.
Interaction partners:
- Intraflagellar transport protein 88 homolog
- Intraflagellar transport protein che-13
- Intraflagellar transport protein 52 C-terminal domain-containing protein
- Tetratricopeptide repeat protein 30 homolog
- TRAF3-interacting protein 1
- Intraflagellar transport protein osm-1
- Clusterin-associated protein 1 homolog
- Intraflagellar transport protein 46 homolog
- Intraflagellar transport protein 56 homolog
- Intraflagellar transport protein 81 homolog
Sequence:
MKLKLSASRKTRHTEMVCGVGWIGTEAILSAADDHVFLLTNTATNESQQILNMPETFFPTSLHIFPRSQTKGGQNDVFAVSTSDGKINILSRNGKVENMVDAHNGAALCARWNSDGTGLLSSGEDGFVKMWSRSGMLRSVLAQFATAVYCVAWDSTSSNVLYCNADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTGGEDLKFKVWDGFGQILFNSSVHDYPITSISWNTDGTLFAVGSHNILRLCDKSGWSHSLEKMNAGSVMALSWSPDGTQLAVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETLETKERISKIAILYKYLIVVTSSHIYIYSSKNWNTPTMIEYNERTVNIIVQCEKIFLVSDGMTITIFTYEGRKLINLNPPGQVMALLDERKIDLANDTLVVRDRADNKVLHFFDPTTGKAQGDGNLKHEHDIVELTVNQCGPLNDRNVAFRDQIGAVHIAMVKTFGVSQRMVKIGSLVEQLVFNDVTNMLCGISEGKIAVWPLPNVAFHDRNLLQKSLIQKNIGSVGKFPQLANFAGNTIVIRKSDGCLLPTGILPFYGTLITMASQSKWDQAIRLCRSIGNDTMWATFAGLAVLHKNMIVMEIAYAALEDDEKVSLINEIKDKTDKETRQAMQVVLTGKLADADVLLERSGLSFRSLMLNIQMFKWKRALELGLKNKQWLEIVMGYREKYLKNCGQKETDPLFLKHMSEVEIDWVHIRELIAAEKAKGNN
Protein: Cell division control protein 48 homolog A (AtCDC48a) (P54609)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Probably functions in cell division and growth processes. Interacts with certain SNAREs as part of specialized membrane fusion events where vesicles from the same organelle fuse (homotypic fusion) (By similarity).
Subcellular location: Nucleus. Cytoplasm, cytoskeleton, phragmoplast. Cell membrane; Peripheral membrane protein. Note=Primarily localized to the nucleus and, during cytokinesis, to the phragmoplast, a site where membrane vesicles are targeted in the deposition of new cell wall materials.
Interaction partners:
- NPL4-like protein 1
- AT2G21270 protein
- NPL4-like protein 2
- Probable ubiquitin conjugation factor E4
- Plant UBX domain-containing protein 5
- Plant UBX domain-containing protein 3
- Plant UBX domain-containing protein 1
- Plant UBX domain-containing protein 4
- Protein OS-9 homolog
- Plant UBX domain-containing protein 6
Sequence:
MSTPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFENSAGSGATTGVADPFATSAAAAGDDDDLYN
Protein: ATP citrate synthase (EC 2.3.3.8) (Q54YA2)
Organism: Dictyostelium discoideum (Social amoeba)
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
Interaction partners:
- Probable ATP-citrate synthase
- Citrate synthase, peroxisomal
- Citrate synthase, mitochondrial
- Citrate synthase
- Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
- Succinate--CoA ligase subunit alpha, mitochondrial
- Probable malate dehydrogenase 2, mitochondrial
- Probable malate dehydrogenase 1
- Probable malate dehydrogenase 3
- Probable aconitate hydratase, mitochondrial
Sequence:
MARKKLREYSTKYIIKNNFALSCNGSKLNLKMIQVSPTTPTLIELSKSIDNIWVNNSKLVVKPDMLFGKRGKNGLVLLNATLEEADKFIKEKINKPVEIGGKSGLVTHFIVEPFLPHTEEYYLSITAERESNRISFSNCGGMEIEENWDKVSSIEIPYGESIDKFDLHTIIDSSVQNREYVIDFIRNVYKLFNDLSFHFIEMNPFTLDAEGKPYPLDARGEVDECASFKCGGRWLVDGEPVQFPQPFGRSLYPEETYVNEIDEKTGASLKLTLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISLATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRRGGPNYQSGLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSPTLNGVH
Protein: ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit) (P0C2Z1)
Organism: Oryza sativa (Rice)
Function: Produces ATP from ADP in the presence of a proton gradient across the membrane.
Subcellular location: Plastid, chloroplast thylakoid membrane {ECO:0000255|HAMAP-Rule:MF_00530}; Peripheral membrane protein {ECO:0000255|HAMAP-Rule:MF_00530}.
Interaction partners:
Sequence:
MKLNLYVLTPKRIIWDCEVKEIILSTNSGQIGVLPNHAPINTAVDMGPLRIRLLNDQWLTAVLWSGFARIVNNEIIILGNDAELGSDIDPEEAQQALEIAEANVSRAEGTKELVEAKVALRRARIRVEAVNWIPPSN
Protein: Methylthioacryloyl-CoA hydratase (EC 4.2.1.155) (Q5LLW6)
Organism: Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Function: Involved in the assimilation of dimethylsulphoniopropionate (DMSP), an important compound in the fixation of carbon in marine phytoplankton, by catalyzing both the hydration and the hydrolysis of 3-(methylthio)acryloyl-CoA (MTA-CoA) to acetaldehyde, CO2, MeSH, and CoA.
Interaction partners:
- 3-methylmercaptopropionyl-CoA dehydrogenase
- Selenium-binding protein, putative
- Methanethiol oxidase
- 3-hydroxybutyryl-CoA dehydrogenase
- Adenosylhomocysteinase
- Homocysteine S-methyltransferase family protein
- O-acetylhomoserine aminocarboxypropyltransferase
- 3-mercaptopyruvate sulfurtransferase
- O-succinylhomoserine sulfhydrylase
- Pterin-binding enzyme domain protein
Sequence:
MTQDVTSGYSNLDLDLRDNGVCVVTLNRPDKRNALDVATIEELVTFFSTAHRKGVRAVVLTGAGDHFCAGLDLVEHWKADRSADDFMHVCLRWHEAFNKMEYGGVPIIAALRGAVVGGGLELASAAHLRVMDQSTYFALPEGQRGIFTGGGATIRVSDMIGKYRMIDMILTGRVYQGQEAADLGLAQYITEGSSFDKAMELADKIASNLPLTNFAICSAISHMQNMSGLDAAYAEAFVGGIVNTQPAARERLEAFANKTAARVRPNS
Protein: Syntaxin-like protein fsv1 (O14222)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Involved in vesicle-mediated protein transport between the Golgi and the vacuole.
Subcellular location: Golgi apparatus membrane {ECO:0000269|PubMed:14575697}; Peripheral membrane protein {ECO:0000269|PubMed:14575697}. Prevacuolar compartment membrane {ECO:0000269|PubMed:14575697}; Peripheral membrane protein {ECO:0000269|PubMed:14575697}. Note=Associated with the Golgi and prevacuolar membrane.
Interaction partners:
- Vesicle transport v-SNARE protein vti1
- Synaptobrevin homolog ykt6
- Syntaxin pep12
- Vacuolar morphogenesis protein 7 homolog
- t-SNARE affecting a late Golgi compartment protein 1
- Synaptobrevin homolog 1
- t-SNARE affecting a late Golgi compartment protein 2
- Protein transport protein sec22
- Integral membrane protein sed5
- Probable vesicular-fusion protein sec17 homolog
Sequence:
MSNLLLIIDSVSQKIRDRRKLEEFGQNPDEEIESSLKDVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEEEFEKQRRASSIPADGTSAFSANPQVASTNNKLTPLPSLQKTTSSSEGSDIEMEAMYPVDGNDPDPINVNVLAQMHQQMLNEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKNRLNKVSRKAKQYPRCFIILLLCALLLLVASI
Protein: Mannan endo-1,4-beta-mannosidase 7 (EC 3.2.1.78) (Beta-mannanase 7) (Endo-beta-1,4-mannanase 7) (AtMAN7) (Q9FJZ3)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. May participate in the hydrolysis of the mannans in the cell wall of germinating seeds.
Subcellular location: Secreted {ECO:0000269|PubMed:23461773, ECO:0000305}.
Interaction partners:
- GTPase ERA-like, chloroplastic
- Ethylene-responsive transcription factor ERF015
- Bifunctional fucokinase/GDP-fucose pyrophosphorylase
- bZIP transcription factor 44
- Pentatricopeptide repeat-containing protein At1g02060
- Transmembrane protein
- Octanoyltransferase LIP2p, chloroplastic
- Nucleolar histone methyltransferase-related protein
- Myelin transcription factor-like protein
- Putative pectinesterase/pectinesterase inhibitor 43
Sequence:
MKLLALFPFLAIVIQLSCWELGTDALPSGGFVRTKGVQFSLNGYPYYANGFNAYWLMYVASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGYRALQYSPGSYNEDMFQGLDFALAEARRHGIKIILSFANNYESFGGRKQYVDWARSRGRPVSSEDDFFTDSLVKDFYKNHIKAVLNRFNTFTKVHYKDDPTIMAWELMNEPRCPSDPSGRAIQAWITEMAAHVKSLDRNHLLEAGLEGFYGQSSPQSKTLNPPGQFGTDFIANNRIPGIDFVTVHSYPDEWFPDSSEQSQMDFLNKWLDAHIQDAQNVLHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKRGGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKIFARMINVEKWKRARGQGQVGKRGHKINN
Protein: Protein NEDD1 (Neural precursor cell expressed developmentally down-regulated protein 1) (NEDD-1) (P33215)
Organism: Mus musculus (Mouse)
Function: Required for mitosis progression. Promotes the nucleation of microtubules from the spindle (By similarity). May play an important role during the embryonic development and differentiation of the central nervous system.
Subcellular location: Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000250|UniProtKB:Q8NHV4}.
Interaction partners:
- Mitotic-spindle organizing protein 2
- Gamma-tubulin complex component 4
- Gamma-tubulin complex component 5
- Gamma-tubulin complex component 6
- Mitotic-spindle organizing protein 1
- Tubulin gamma-1 chain
- Serine/threonine-protein kinase PLK1
- HAUS augmin-like complex, subunit 6
- Nucleoside diphosphate kinase homolog 7
- CDK5 regulatory subunit-associated protein 2
Sequence:
MQENLRFASSGDDVKIWDASFLTLVDKFNPHTSPHGISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELAEGQKQTCVDLNSTSMYLASGGLNNTVNIWDLKSKRLHRSLKDHKCEVTCVAYNWNDCYIASGSLSGEIILHSVTTNTSSTPFGHGSKQPIRHIKYSLFRKSLLGSVSDNGVVTLWDVNSQSSYHTFDSTHKAPASGICFSPVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAVDFMPDGATLAIGSSRGKIYQYDLRMLKSPVKTISAHKTSVQCIAFQYSTSLTKASLSKGSSNKATAVNKRSVPVSSSSGAAQNSGIVREAPSPSIATVLPQPVTTALGKGSGAAQDEAGLARSKSTDIFSKETDAGKSQDFSSFDDTGKNSLGDMFSPIRDDAVVSKGGDESIGKGDGLDFLPQLNSVFPLRKNAGASSSLVLHSSPLNVLMGSSGKEENESHEPSAESKRAYLGKQEPKDAMKQFTKLISSGAEPGILNTCPSSNQARNLEKFEKPEKDIEAQLIHEPSVNGSSTTVPKAASSVTAGVASSLSEKIVDTLGNSRPGAPLTSVQIRFIQNMIQETLDDFREACHRDIVNLQVEMIKQFHIQLNEMHSLLERYSVNEGLVAEIERLREENKRLRAHF