wanglab/gogpt-training-data huggingface dataset:
Protein: Hematopoietic progenitor cell antigen CD34 (CD antigen CD34) (P28906)
Organism: Homo sapiens (Human)
Function: Possible adhesion molecule with a role in early hematopoiesis by mediating the attachment of stem cells to the bone marrow extracellular matrix or directly to stromal cells. Could act as a scaffold for the attachment of lineage specific glycans, allowing stem cells to bind to lectins expressed by stromal cells or other marrow components. Presents carbohydrate ligands to selectins.
Subcellular location: Membrane; Single-pass type I membrane protein.
Interaction partners:
- L-selectin
- ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
- Fibronectin
- Mast/stem cell growth factor receptor Kit
- E-selectin
- Myeloid cell surface antigen CD33
- Apoptosis regulator Bcl-2
- Granulocyte colony-stimulating factor
- Platelet endothelial cell adhesion molecule
- Kit ligand
Sequence:
MLVRRGARAGPRMPRGWTALCLLSLLPSGFMSLDNNGTATPELPTQGTFSNVSTNVSYQETTTPSTLGSTSLHPVSQHGNEATTNITETTVKFTSTSVITSVYGNTNSSVQSQTSVISTVFTTPANVSTPETTLKPSLSPGNVSDLSTTSTSLATSPTKPYTSSSPILSDIKAEIKCSGIREVKLTQGICLEQNKTSSCAEFKKDRGEGLARVLCGEEQADADAGAQVCSLLLAQSEVRPQCLLLVLANRTEISSKLQLMKKHQSDLKKLGILDFTEQDVASHQSYSQKTLIALVTSGALLAVLGITGYFLMNRRSWSPTGERLGEDPYYTENGGGQGYSSGPGTSPEAQGKASVNRGAQENGTGQATSRNGHSARQHVVADTEL
Protein: Ferulic acid decarboxylase 1 (EC 4.1.1.102) (Phenacrylate decarboxylase) (A2QHE5)
Organism: Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
Function: Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.
Subcellular location: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_03196}.
Interaction partners:
Sequence:
MSAQPAHLCFRSFVEALKVDNDLVEINTPIDPNLEAAAITRRVCETNDKAPLFNNLIGMKNGLFRILGAPGSLRKSSADRYGRLARHLALPPTASMREILDKMLSASDMPPIPPTIVPTGPCKENSLDDSEFDLTELPVPLIHKSDGGKYIQTYGMHIVQSPDGTWTNWSIARAMVHDKNHLTGLVIPPQHIWQIHQMWKKEGRSDVPWALAFGVPPAAIMASSMPIPDGVTEAGYVGAMTGSSLELVKCDTNDLYVPATSEIVLEGTLSISETGPEGPFGEMHGYIFPGDTHLGAKYKVNRITYRNNAIMPMSSCGRLTDETHTMIGSLAAAEIRKLCQQNDLPITDAFAPFESQVTWVALRVDTEKLRAMKTTSEGFRKRVGDVVFNHKAGYTIHRLVLVGDDIDVYEGKDVLWAFSTRCRPGMDETLFEDVRGFPLIPYMGHGNGPAHRGGKVVSDALMPTEYTTGRNWEAADFNQSYPEDLKQKVLDNWTKMGFSN
Protein: Protein CNGC15b (Cyclic nucleotide-gated ion channel protein 15 b) (G7JND3)
Organism: Medicago truncatula (Barrel medic) (Medicago tribuloides)
Function: Cyclic nucleotide-gated channel involved in the establishment of both rhizobial and mycorrhizal associations. Required for full activation of nuclear-localized Ca(2+) oscillations by Nod and Myc factors. Simultaneous activation of the K(+)-permeable channel DMI1 and the Ca(2+) channel CNGC15 can give rise to sustained Ca(2+) oscillations. May function during fertilization in both female and male gametophytic Ca(2+) signaling.
Subcellular location: Nucleus membrane {ECO:0000269|PubMed:27230377}; Multi-pass membrane protein {ECO:0000255}.
Interaction partners:
Sequence:
MVTPKFMSDLFEGDHLELAKLTSPNGDNGIKFNEKHVAPRVLSRVFSEDYKRVKRRRRIFDPRGQTIHQWNKIFLVACLISLFVDPLFFYLPIVQDEVCIDIGIAVEVFLIIIRSIADVFYVIHIFMRFHTAYVAPSSRVFGRGELVIDSSKIASRYLHKGFFLDFIAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIIQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCKLEESSCQFDFFDCNMVKDSLRVSWFVTSNVTNLCSPNSLFYQFGIYGDAVTSKVTTSAFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRKYDQYKWIATRGVDEESLLRGLPLDLRRDIKRHLCLELVRRVPLFDAMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGNLDSYTTDGGRTGFFNSCRIGPGDFCGEELLTWALDPRPTMVIPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQVAWRRTIQEKKGSC
Protein: Autophagy-related protein 11 (Q9SUG7)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Accessory protein involved in autophagy. Acts as scaffold protein of the ATG1-ATG13 complex for faithful delivery of autophagic vesicles to the vacuole. Involved in the stress-induced phosphorylation of ATG1A for turnover of ATG1-ATG13 complex and proper ATG1-ATG13 complex assembly or activity. Required for selective mitophagy. Required for senescence-induced breakdown of mitochondria-resident proteins and mitochondrial vesicles. Seems not essential for ATG8-mediated autophagy.
Subcellular location: Cytoplasmic vesicle, autophagosome {ECO:0000269|PubMed:24563201}.
Interaction partners:
- Autophagy-related protein 101
- Autophagy-related protein 13a
- Beclin-1-like protein
- Serine/threonine-protein kinase ATG1b
- Serine/threonine-protein kinase ATG1c
- Phosphatidylinositol 3-kinase VPS34
- Serine/threonine-protein kinase VPS15
- Autophagy-related protein 16
- Serine/threonine-protein kinase ATG1a
- Serine/threonine-protein kinase ATG1t
Sequence:
MSGSFTESFADDGKLLLCVAENGHSFEFQCSETTSVESVMRFVESVSGIALSDQLLLSLDMKLEPQKLLSAFGLPASDREVFVFNKAMLQSNSHPPSPEDVDLQDVADALPPASLHEHHPLDDASDPALKALPLYERQFRYHFHKGRTIYNCTVVKHENCERLTREQKVQQRAVEVATRNLEQYYRVIYQNFLEFMKRYKHQHRLHSDLLMNFGRDIEKLRSAKIHPYLQTESRKCLLDFVKEDNLKKAVENCASSHRQFENKIAQFQQMFVEVKRKVEELFACRASLSMKNLEVTVKDHERFIDEEKSIMQSLSKDVNTVKKLVDDCMSSQVSSSLRPHDAVSALGPMYEVHDKNHLPKMQACYNSISELLDFCKNKKNEMNNFVHGYMQKITYVTYIIKDAKLQFPVFREAMVRQDDLFADLKLVRGVGPAYRACLAEVVRRKASMKLYMGMAGQLAEKLAMKRETEVRKREEFLKTHGPFVPRDVLASMGLYDTPTQCDVNVAPYDTSLLNIEISDVDRYAPEFLVGLHSKIASLKSSLTMSGDSSLSAEPEEIGIDTFDKDNFDDILAASELIEIAGTSKMEVENAKLKADLASAISRICSLGPQFEYEVLDESEVENVLKNAADKTAEALQAKDEYEKHLLLMLKEKQMHCDSYEKRIRELEQRLSDEYLQGQRHNNKDVSGLNLMHEKVSEYKAEASSDVEGNKTHVSGSEPMDEVSCVSNLTSKQPCKAREGMDENMVDSSQVLSQPLDSSMLESQQNNEKGGKDSEAGEMGVFLSNSSTAESPQKSLDDNVATGRGLDAKDSGDIILELRNELMEKSNKLSEMESKLNGAMEEVSNLSRELETNQKLLEESQMNCAHLENCLHEAREEAQTHLCAADRRASQYTALRASAVKMRGLFERFRSSVCAGSGIADFADSLRTLAQALANSVNENEDDGTTEFRKCIRVLADKVSFLSKHREELLEKCQNLEATSEQTRKDLEEKKELVKTLYTKHQLGKQANKEKISFGRLEVHEIAAFVLNQAGHYEAINRNCPNYYLSSESEALFTDHLPSRPTYIVGQIVHIERQIVKLPSQLSASASPEAGKTHHLCSDQGSRTLASSSISTSTSATTTSNPYGLSSGCEYFIVTIAMLPDTAIHQQAS
Protein: Intraflagellar transport protein 70B (Tetratricopeptide repeat protein 30B) (TPR repeat protein 30B) (Q8N4P2)
Organism: Homo sapiens (Human)
Function: Required for polyglutamylation of axonemal tubulin. Plays a role in anterograde intraflagellar transport (IFT), the process by which cilia precursors are transported from the base of the cilium to the site of their incorporation at the tip.
Subcellular location: Cell projection, cilium {ECO:0000250}.
Interaction partners:
- Intraflagellar transport protein 27 homolog
- Intraflagellar transport protein 52 homolog
- Intraflagellar transport protein 46 homolog
- Intraflagellar transport protein 88 homolog
- Intraflagellar transport protein 74 homolog
- Intraflagellar transport protein 81 homolog
- Intraflagellar transport protein 22 homolog
- TRAF3-interacting protein 1
- Intraflagellar transport protein 56
- Intraflagellar transport protein 25 homolog
Sequence:
MAGLSGAQIPDGEFTAVVYRLIRNARYAEAVQLLGGELQRSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQALYKACLYAEATRVAFLLLDNPAYHSRVLRLQAAIKYSEGDLPGSRSLVEQLPSREGGEESGGENETDGQINLGCLLYKEGQYEAACSKFFAALQASGYQPDLSYNLALAYYSSRQYASALKHIAEIIERGIRQHPELGVGMTTEGIDVRSVGNTLVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLIYKFLTPYLYDFLDAVITCQTAPEEAFIKLDGLAGMLTEVLRKLTIQVQEARHNRDDEAIKKAVNEYDETMEKYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKHYDNILNVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYDDPDKKMYHLCIVNLVIGTLYCAKGNYDFGISRVIKSLEPYNKKLGTDTWYYAKRCFLSLLENMSKHTIMLRDSVIQECVQFLEHCELHGRNIPAVIEQPLEEERMHVGKNTVTYESRQLKALIYEIIGWNI
Protein: Transcriptional repressor LexA, putative (Q3Z9S7)
Organism: Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) (Dehalococcoides ethenogenes (strain 195))
Interaction partners:
- Protein RecA
Sequence:
MEDKSSIGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDISTSALLGEKEESLGNLLSRAQAISRRMDDIEFIPVIGYIPAGYPELVDEEAASDYVPVPKELLKNASKRVYALRVSGESLKGDGIENGDIIIVDKDSEMFEGKIYAVRTAHNEVTAKHLYLNNGQIILRSSNGDYKDLVMTNADILGRVIASIKRF
Protein: Protein ARV 2 (AtArv2p) (Q5MK23)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Mediator of sterol homeostasis involved in sterol uptake, trafficking and distribution into membranes. Regulates also the sphingolipid metabolism.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:16725371}; Multi-pass membrane protein {ECO:0000250|UniProtKB:Q9H2C2}.
Interaction partners:
Sequence:
MAREKKTCVECGHKVKSLFIQYSPGNFRLMKCENCEEVADEYVECELLIIFIDLILHKTKAYRHLLYNVVNQESANVQHLLWKLVLAYLLLDTYRSLLLRRTNDGSNVSMSFLFESLEVLVNVLSANFAFVFSFAFAAKLMLVMPRGKEILLTILISSYVKIFLFAMPVWEFPVSVIFIVDMLVLTSNAVALKVMTESATSRCLAVCFIAHSIRFLVDQISGHLGSVM
Protein: Signal recognition particle subunit SRP68 (SRP68) (Signal recognition particle 68 kDa protein) (Q00004)
Organism: Canis lupus familiaris (Dog) (Canis familiaris)
Function: Component of the signal recognition particle (SRP) complex, a ribonucleoprotein complex that mediates the cotranslational targeting of secretory and membrane proteins to the endoplasmic reticulum (ER). The SRP complex interacts with the signal sequence in nascent secretory and membrane proteins and directs them to the membrane of the ER. The SRP complex targets the ribosome-nascent chain complex to the SRP receptor (SR), which is anchored in the ER, where SR compaction and GTPase rearrangement drive cotranslational protein translocation into the ER (By similarity). Binds the signal recognition particle RNA (7S RNA), SRP72 binds to this complex subsequently. The SRP complex possibly participates in the elongation arrest function (By similarity).
Subcellular location: Cytoplasm {ECO:0000250|UniProtKB:Q9UHB9}. Nucleus, nucleolus {ECO:0000250|UniProtKB:Q9UHB9}. Endoplasmic reticulum {ECO:0000250|UniProtKB:Q9UHB9}.
Interaction partners:
- Signal recognition particle subunit SRP72
- Signal recognition particle subunit SRP54
- Signal recognition particle 9 kDa protein
- Signal recognition particle 19 kDa protein
- Signal recognition particle 14 kDa protein
- Signal recognition particle receptor subunit alpha
- Ubiquitin-like domain-containing protein.
- 40S ribosomal protein S30
- Ubiquitin-like domain-containing protein.
- SRP receptor subunit beta.
Sequence:
MAAEKQVPGGGGGGGGGGGGGGGSGGGRGAGGEENKENERPSAGSKANREFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDLPDVQELITQVRSEKCSLQAAAILDASDSHQPETSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKGIFGFRS
Protein: Protein YIPF6 (YIP1 family member 6) (Q96EC8)
Organism: Homo sapiens (Human)
Function: May be required for stable YIPF1 and YIPF2 protein expression.
Subcellular location: Golgi apparatus membrane {ECO:0000269|PubMed:27999994}; Multi-pass membrane protein {ECO:0000305}. Note=Evenly distributed between cis- and trans-Golgi apparatus (PubMed:27999994). Mainly localizes within medial-/trans-Golgi and trans-Golgi network (TGN), while less so within cis-Golgi (PubMed:28286305). {ECO:0000269|PubMed:27999994, ECO:0000269|PubMed:28286305}.
Interaction partners:
- Protein YIPF1
- Pseudouridine-5'-phosphatase
- Protein YIPF2
- StAR-related lipid transfer protein 8
- Phosphomannomutase 2
- Phosphomannomutase 1
- Zinc finger protein 335
- Catalase
- Oligophrenin-1
- Trans-Golgi network integral membrane protein 2
Sequence:
MAEAEESPGDPGTASPRPLFAGLSDISISQDIPVEGEITIPMRSRIREFDSSTLNESVRNTIMRDLKAVGKKFMHVLYPRKSNTLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVIVWFGAVTITLNSKLLGGNISFFQSLCVLGYCILPLTVAMLICRLVLLADPGPVNFMVRLFVVIVMFAWSIVASTAFLADSQPPNRRALAVYPVFLFYFVISWMILTFTPQ
Protein: Polypeptide N-acetylgalactosaminyltransferase 13 (EC 2.4.1.41) (Polypeptide GalNAc transferase 13) (GalNAc-T13) (pp-GaNTase 13) (Protein-UDP acetylgalactosaminyltransferase 13) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 13) (Q8IUC8)
Organism: Homo sapiens (Human)
Function: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine (GalNAc) residue from UDP-GalNAc to a serine or threonine residue on the protein receptor. Generates GalNAc-O-Ser/Thr structure also known as Tn antigen, which itself is immunogenic but also serves as a precursor for the synthesis of different mucin-type O-glycan core structures. Contributes to the synthesis of O-linked glycans on mucins and proteoglycans of the central nervous system. May promote neurogenesis through glycosylation and stabilization of PDPN (By similarity).
Subcellular location: Golgi apparatus membrane {ECO:0000250}; Single-pass type II membrane protein {ECO:0000250}.
Interaction partners:
- Beta-1,4 N-acetylgalactosaminyltransferase 1
- Mucin-3A
- Syndecan-3
Sequence:
MRRFVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLPALRAVISRNQEGPGEMGKAVLIPKDDQEKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVINRSPHYLLSEVILVDDASERDFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAHCECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATPYTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLENIYPDSQIPRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGPVIMLKCHHMRGNQLWEYDAERLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT
Protein: mRNA export factor MEX67 (Q386S2)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Interaction partners:
- NTF2-related export protein
- Poly
- Probable eukaryotic initiation factor 4A
- RNA-binding protein, putative
- Nuclear cap-binding protein subunit 2
- Nucleoporin
- Nucleoporin NSP1-like C-terminal domain-containing protein
- Uncharacterized protein
- RRM domain-containing protein
- Nucleoporin
Sequence:
MLKLVFEKQQQRVYNAETGVLNLTQFKEIPDLTDVAGSINFNTQAFCQALCSTIKSLIVPPPSAIQLKGNGILSVSHLAMQLEKADLHLTLRAISLEANLIKSVESLQELKKFTNLREIVLRDNPIANRSDYRTTIKKLMPSLIGLDGESICVPPLSLPWPQFSPTGYSEAQKHVLQFIQCGLLNPLEGDGASGVAHGVDAVSDLYAANAVLTLSLSSPEVAVSTPMRTMNGAAGVPQQRNVIRDIVSLRLKQTESNHNLLHGVKSTVVALGRTKVCSQMEHWLYPKTFRVHHYLHSSASTVFLDNSYLTGPSPTAMKVPVTIVTLHGTMTWNNTGVPGDATTIGPMTIRRNFTRVLSVTQGDAGRWLITNDMVSLYLTPSGSSASSKSGNGVPETTQLSECRILLDPRSDRSRAEVLSRKKDVPVEVIMALCQHVGNDAELFTVLDDIRGVPLSAFEHCANLAGENIMESIQMCRLVNLFGMAPQNALEMLRHNNGNWSDTVAAVAATAPVAAVPQ
Protein: Uncharacterized protein (Q9AB51)
Organism: Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus)
Interaction partners:
Sequence:
MRRRISGSCAWSLARDVRDEENAPMKRLKTFAMLALATTALATTPALALYRDRDHNPPGPRGGPGTNWENPPGWRGGPGVSPDRRYYRWNGQRVEFRYRDGYYYNHAYGYYRPGFGWWNQAGKCWFDNDRNPPGPRGGSGTNWENPPGWRGGPGASPDRYGRCR
Protein: Fibulin-1 (Q8NBH6)
Organism: Homo sapiens (Human)
Subcellular location: Secreted, extracellular space, extracellular matrix {ECO:0000256|ARBA:ARBA00004498, ECO:0000256|PIRNR:PIRNR036313}.
Interaction partners:
Sequence:
MSSWRPAVRTDTGWPLIRRTARCHMLRNPKNAGWCRSSAATASWRSCTVPRASAWPTSRTAVPRPMVGYQCGQVFRACCVKSQETGDLDVGGLQETDKIIEVEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYRRSAATLQQEKTDTVRCIKSCRPNDVTCVFDPVHTISHTVISLPTFREFTRPEEIIFLRAITPPHPASQANIIFDITEGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF
Protein: Insecticidal toxin complex protein TcdA1 (Q7N7Y9)
Organism: Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) (Photorhabdus luminescens subsp. laumondii)
Interaction partners:
- Insecticidal toxin complex protein TcdB1
- Insecticidal toxin complex protein TcdB2
- Insecticidal toxin complex protein TccC2
- Insecticidal toxin complex protein TccC3
- Insecticidal toxin complex protein TccC1
- NAD
- Insecticidal toxin complex protein TcaC
- Insecticidal toxin complex protein TccC7
- Insecticidal toxin complex protein TccC4
- Insecticidal toxin complex protein TccC6
Sequence:
MNSPVKEIPDVLKNQCGFNCLTDISHSSFNEFHQQVSAHLSWSEAHDLYHDAQQAQKDNRLYEARILKRANPQLQNAVHLAIIAPNVELIGYNSQFSGRASQYVAPGTVSSMFSPAAYLTELYREARNLHASNSVYYLDTRRPDLKSMALSQQNMDTELSTLSLSNELLLESIKTESKLDNYTKVMEMLSTFRPSGATPYHDAYENVREVIQLQDPGLEQLNASPAIAGLMHQASLLGINASISPELFNILTEEITEGNAEELYEKNFGNIEPASLAMPEYLKRYYNLSDEELSQFIGKASNFGQQEYSHNQLITPVVNSSDGTVKVYRITREYTTNAYQVDVELFPFGGENYRLDYKFKDFWNATYLSIKLNDKRELIRTEGAPQVNIEYSANITLSTTDISQPFEIGLTRVLPNTNYAYAAAKFTVEEYNQYSFLLKLNKAIRLSRATELSPTILEGIVRSVNQQLDINTEVLGKVFLTKYYMQRYAIDAETALILCHALISQRSYNNQTSQFDRLFNTPLLNGQYFSTGDEEIDLNPGSNGDFRKTILKRAFNIDDVSLYRLLKITDHNNKDGKIKNNLKDLSNLYIGKLLAEIHQLTIDELDLLLVAVGEGETNLSAISDKQLTTLIRKLNTITGWLHIQKWSVFQLFIMTSTSYNKTLTPEIKNLLDTVYHGLQGFDKDKADLLHVMAPYIAATLQLSSENVAHSVLLWADKLKPGDGAMTAEKFWDWLNTQYTPGLSEAVEMREHIVQYCQALAQLEMVYHSTGINENAFRLFVTKPEMFGTSIGAAPTHDALSLIMLTRFADWVNALGEKASSVLAALEANTLTAEQLADAMNLDANLLLQASTQAQNHQHLPPVTQENAFSCWTSINTILQWVNVAQQLNVAPQGVSALVGLDYIQSKQKTPTYTQWENAAGILTAGLNSQQADTLHAFLDESRSAALSTYYIRQVAKPAAAIKSRDDLYQYLLIDNQVSAAIKTTRIAEAIASIQLYVNRALENVEENADSGVISRQFFIDWDKYNKRYSTWAGVSQLVYYPENYIDPTIRIGQTKMMDALLQSVSQSQLNTDTVEDAFMSYLTSFEQVANLKVISAYHDNINNDQGLTYFIGLNETDAGEYYWRSVDHSKFSDGKFAANAWSEWHKIDCPINPYRSTIRPVMYKSRLYLLWLEQKEITKQTGNSKDGYQTETDYRYELKLAHIRYDGTWNTPITFDVNEKISELKLVKNKAPGLYCAGYQGEDTLLVMFYNQQDTLDSYKTAAMQGLYIFADMASKDMTLGQSNVYRDNSYKQFDTNSVRRVNNRYAENYEIPSSVNSNNSYGRGEYNLSMVHGGDIPIIRYQASSSDLKIHISPKLRITYEGADERTRNQCNLIKKYGKLGDKFIIYTNLSVNTQWTSNKKLIYPVYQYRGNTTNNSQGRLLFYRDNQIGKVSVFLPNWGQSLYSEVTNSNNGYIIDTSNQEPLFKQYLYMEDKNNGFRIIATDVYNAVEINTAISPAKIQVTVKAGSKEKTFTADKDVSVQPSPSFDEMYYQFNTLEIEGTGLNFNNNLASIDVTFTALAEDGRKLGYESFSIPVTRKVSTDNALTLHHNENGAQYMQWQAYRTRLNTLFARQLVARATTGIDTILSMETQNIQEPVLWSDNFTATLPIYNSSLHGNSKNIKIMLGNSEKQPDQANVIYQGELTDKNQLINLSETYISIKERSNNTKPVDNKGNDSWIYLFVKYSTNPIKIGEFWFKNGTNFQGYYPKGNEKNRDPIFIENQKTEPMDFSGANSLYFWELFYYTPMLVAQRLLHEQNFDEANRWLKYVWSPSGYIVHGQIQNYQWNVRPLLEDTSWNSDPLDSVDPDAVAQHDPMHYKVSTFMRTLDLLIARGDQAYRQLERDTLNEAKMWYMQALHLLGDKPYLPLSTTWNNPRLDRAADITTQNAHASSIVALRQSTPAPLALRSANTLTDLFLPQINEVMMNYWQTLAQRVYNLRHNLSIDGQPLYLPIYATPADPKALLSAAVATSQSGGKLPESFMSLWRFPHMLENARGMVSQLIQFGSTLQNIIERQDAEALNALLQNQAAELILTNLSIQDKTIEELDVEKTVLEKSKAGAQSRFDSYSKLYDENINAGENQAMMLRASAAGLTTAVQASRLAGAAADLVPNIFGFAGGGSRWGAIAEATGYVMEFSANVMNTEADKISQSETYRRRRQEWEIQRNNAEAELKQLDSQLKSLVVRREAAVLQKTSLKTQQEQTQSQLAFLQRKFSNQALYNWLRGRLAAIYFQFYDLAVARCLMAEQAYRWEINDASASFIKPGAWQGTYAGLLAGETLMLSLTQMEDAHLKRDKRALEVERTVSLAEVYAGLPQDKGPFSLAQEIEKLVSKGSGSAGSDNNNLAFGAGTDTKTSLQASISLADLKIREDYPTSLGKIRRIKQISVTLPALLGPYQDVQAILSYGDKTGLANGCEALAVSHGMNDSGQFQLDFNDGKFLPFEGIAIDQGTLTLSFPNASMPKKGKQATMLKTLNDIILHIRYTIK
Protein: ISG12a protein (Q70LN2)
Organism: Mus musculus (Mouse)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Interaction partners:
Sequence:
MAFSGTGTLVASIVSKMTSSAAMVKAGGAVSGTILAGSKGLILLTQSALGSATSALGALKVGTILSGFSASTLAASPIGEEPALVGREKKSDFRFSFPAAGKAARRHRKEGQSKIYLKGFEFSRAMTVAAVPPALSAVGFTASGIAASSLAAKMMSLSAIANGGGVPAGGLVAILQSAGAAGLSVPSTVIVGSAGSAVVASVMNICESFYPFLMGSEVADMATEVADMAIEVADISTEEALPNLSNTEKD
Protein: F-box only protein 25 (Q8TCJ0)
Organism: Homo sapiens (Human)
Function: Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. May play a role in accumulation of expanded polyglutamine (polyQ) protein huntingtin (HTT) (By similarity).
Subcellular location: Nucleus {ECO:0000269|PubMed:16278047, ECO:0000269|PubMed:18287534}. Note=In the nucleus, associates with a subnuclear dot-like structure. Colocalized with SKP1.
Interaction partners:
- S-phase kinase-associated protein 1
- Cullin-1
- F-box only protein 32
- Protein YIPF1
- Testis development-related protein
Sequence:
MPFLGQDWRSPGWSWIKTEDGWKRCESCSQKLERENNRCNISHSIILNSEDGEIFNNEEHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSPQHFIDLFKF
Protein: Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial (P33421)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Membrane-anchoring mono-heme cytochrome b subunit of succinate dehydrogenase (SDH) that is involved in system II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). SDH3 and SDH4 form the membrane dimer that anchors the catalytic dimer formed by SDH1 and SDH2 to the matrix surface of the mitochondrial inner membrane. Electrons originating from the catalytic dimer enter the membrane dimer for ubiquinone reduction.
Subcellular location: Mitochondrion inner membrane; Multi-pass membrane protein.
Interaction partners:
- Mitochondrial inner membrane protein SHH4
- Mitochondrial import inner membrane translocase subunit TIM18
- Succinate dehydrogenase cytochrome b small subunit, mitochondrial
- Succinate dehydrogenase iron-sulfur subunit, mitochondrial
- Mitochondrial import inner membrane translocase subunit TIM54
- Succinate dehydrogenase flavoprotein subunit 2, mitochondrial
- Succinate dehydrogenase flavoprotein subunit, mitochondrial
- Succinate--CoA ligase subunit beta, mitochondrial
- Succinate--CoA ligase subunit alpha, mitochondrial
- Fumarate hydratase, mitochondrial
Sequence:
MSAMMVKLGLNKSALLLKPSAFSRAAALSSSRRLLFNTARTNFLSTSPLKNVASEMNTKAAIAEEQILNKQRAKRPISPHLTIYQPQLTWYLSSLHRISLVLMGLGFYLFTILFGVSGLLGLGLTTEKVSNWYHQKFSKITEWSIKGSFAYLFAIHYGGAIRHLIWDTAKELTLKGVYRTGYALIGFTAVLGTYLLTL
Protein: Zinc finger protein 2 (AtZFP2) (Q39261)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs.
Subcellular location: Nucleus {ECO:0000269|PubMed:20466844}.
Interaction partners:
- Transcription factor bHLH99
- Uncharacterized protein
- Protein RALF-like 33
- Zinc finger CCCH domain-containing protein 14
Sequence:
MDYQPNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFSGRFELYGRGYQGFLESGGSRDFSARRVPESGLDQDQEKSHLDLSLRL
Protein: LP03982p (RNA polymerase I and III subunit C (EC 2.7.7.6)) (Q9VMX3)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
- DNA-directed RNA polymerase I subunit RPA2
- LD14127p
- DNA-directed RNA polymerases I, II, and III subunit RPABC1
- DNA-directed RNA polymerase I subunit RPA1
- RNA polymerase I subunit F
- DNA-directed RNA polymerases I, II, and III subunit RPABC3
- DNA-directed RNA polymerases I, II, and III subunit RPABC2
- DNA-directed RNA polymerases I and III subunit RPAC2
- DNA-directed RNA polymerases I, II, and III subunit RPABC5
- DNA-directed RNA polymerase subunit
Sequence:
MASKNRKEPLLYMEEYRVKQDPQDYGLADDVFSVQAFKEKLHIKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRLFAYRTEESTEAGTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPGVIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIEAE