wanglab/gogpt-training-data huggingface dataset:
Protein: Par-1, isoform R (EC 2.7.11.-, EC 2.7.11.26) (SD05712p) (Q7YU80)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MEATTTTTPDLNRGDATRKSVRLYAARKGAAPAPPKLSVAPSSNQNSNHSSNNNNSSSNLPETEKEMELRQTHLANKDLDGATEDDSIVELRRRDAQATPLPRIAVSALPTLQPHPTPKERQKPPMPRLLSTEDDAGVSFALGSIEKHIHNVEESFKQQQQNQQSQSSMDVMKLEIKRKQSKRYGETENLLRPGISDMSSENDFQYLGGRRAGELDDSNELMLSEFQRGSDGRNSIGAYSKNSAAAANGANAVKAKLARTASDTKNNDTVLAMRATFKQKQHLQDEKQPAVWRPAGTGPTPAARSSSSTTSTSGSASRGGSSSSVVDGVAPSKLTATTISASKRREENLRQFEALLAQKSSHRHGASGASGTGSNAASSKRRSDRPIVAPIPPYNSSRAEHVTSSTRHSVDPRSHSGHESRSGTASTHPPVGHHPTSRVPSVVANRSNVYSNNAAQGSPNMQMRSSAPMRWRATEEHIGKYKLIKTIGKGNFAKVKLAKHLPTGKEVAIKIIDKTQLNPGSLQKLFREVRIMKMLDHPNIVKLFQVIETEKTLYLIMEYASGGEVFDYLVLHGRMKEKEARVKFRQIVSAVQYCHQKRIIHRDLKAENLLLDSELNIKIADFGFSNEFTPGSKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGSTLRELRERVLRGKYRIPFYMSTDCENLLRKFLVLNPAKRASLETIMGDKWMNMGFEEDELKPYIEPKADLADPKRIEALVAMGYNRSEIEASLSQVRYDDVFATYLLLGRKSTDPESDGSRSGSSLSLRNISGNDAGANAGSASVQSPTHRGVHRSISASSTKPSRRASSGVGPTNAAATVAAATGAVGAVNPSNNYNAAGSAADRASVGSNFKRQNTIDSATIKENTARLAAQNQRPASATQKMLTTADTTLNSPAKPRTATKYDPTNGNRTVSGTSGIIPRRSTTLYEKTSSTEKTNVIPAETKHFPRNVPSRSTFHSGQTRARNNTALEYSGTSGASGDSSHPGRMSFFSKLSSRFSKRPNQ
Protein: Uncharacterized protein, isoform E (Q8IMP0)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
Sequence:
MRGLVEDTKRTKLSSANNNNLSSTSGSGRIKSSSLATGSSASGSSSKPLRSAVKTPTSGSATSLSSGTMAAKKAPQTGQQQVGKSAKSATAATPTGTTATAIGATATTRAQAAAAKSQKGQNPPSQQVQPKQQPPQPQQTQQQPLVLQQQQASNSSNTIALPKASHANTSEELAGGVQDTIYLCNFRVSVDGEWLCLKELQDIDVAGGTGNQAAQTSEKLAGGSSSQTGGFGSNYNVGSSSSKRNSKRFSGLSTGSGSGGNAGGGGGLDITDNGIMAIENLIGRRLCDMVNSGSSALGQSQSHSQSQHQSVGLFAEWSHLSRDTAEIERSNLVNICKLVVKELLEQSLRYGRMLDSDHLPLQHFFIVIEHVLGHGLRPKKGLLGPRKELWDLLQSVEHYCPEAQDITASVRDLPTVRTHIGRARAWLRIALMQKKLSDYLQALIEHREDSLFDYYEPHALMMSDEIVVIMGILVGLNVIDCNLCVKEEDLDSQQGVIDFSLYLRSSSRNADAAPEDSAPPALLDATGQGNMIAVLDQKNYIEELNRHLNATVGNLQAKVESLTTTNALMKEDLAIARNSLLALQAENQAMRQSTSAGDNNSTGSGGSSDKDKEKASEELVEERRKNSELEKELKLQVSLKAESDMAMKLLEKDIHEKQDTIVSLRRQLDDIKQINLEMYRKLQECEDELTQKGEMVSRLQTKASQIGNILQSLEKKYESKLIDQQHHGPGSGSGTGAGTGAGNGAIGGDRSPNTRRQQNLEKFEALTKKHKQDAGPPMKRMHLKMDAFPPFDPSKYRKSPRQPDAPNTEELQQSKDAKTPTSAKSLNDELAEAAAAVTQHFGVDASQSDYVLCREQAADGET
Protein: Acyltransferase Pun1 (EC 2.3.2.35) (Acyltransferase 3) (Capsaicin synthase) (Capsiate synthase) (Protein PUNGENT 1) (D2Y3X2)
Organism: Capsicum annuum (Capsicum pepper)
Function: Participates in the biosynthesis of capsaicinoids in pungent cultivars of Capsicum annuum. Capsaicinoids, the alkaloids responsible for the heat or pungency of chili pepper, are synthesized from phenylpropanoid intermediates in the placental tissue of chili peper fruit (Probable). Can transfer an acyl from (6E)-8-methylnon-6-enoyl-CoA to vanillylamine forming capsaicin and CoA.
Interaction partners:
- Vanillin aminotransferase
- Putative aminotransferase ACS10
- Putative aminotransferase ACS10
Sequence:
MAFALPSSLVSVCNKSFIKPSSLTPSTLRFHKLSFIDQSLSNMYIPCAFFYPKVQQRLEDSKNSDELSHIAHLLQTSLSQTLVSYYPYAGKLKDNATVDCNDMGAEFLSVRIKCSMSEILDHPHASLAESIVLPKDLPWANNCEGGNLLVVQVSKFDCGGIAISVCFSHKIGDGCSLLNFLNDWSSVTRDRTTTTLVPSPRFVGDSVFSTQKYGSLITPQILSDLNQCVQKRLIFPTDKLDALRAKVAEESGVKNPTRAEVVSALLFKCATKASSSMLPSKLVHFLNIRTMIKPRLPRNAIGNLSSIFSIEATNMQDMELPTLVRNLRKEVEVAYKKDQVEQNELILEVVESMREGKLPFENMDGYKNVYTCSNLCKYPYYTVDFGWGRPERVCLGNGPSKNAFFLKDYKAGQGVEARVMLHKQQMSEFERNEELLEFIA
Protein: Voltage-dependent calcium channel gamma-5 subunit (Neuronal voltage-gated calcium channel gamma-5 subunit) (Transmembrane AMPAR regulatory protein gamma-5) (TARP gamma-5) (Q9UF02)
Organism: Homo sapiens (Human)
Function: Regulates the gating properties of AMPA-selective glutamate receptors (AMPARs). Modulates their gating properties by accelerating their rates of activation, deactivation and desensitization. Displays subunit-specific AMPA receptor regulation. Shows specificity for GRIA1, GRIA4 and the long isoform of GRIA2. Thought to stabilize the calcium channel in an inactivated (closed) state (By similarity).
Subcellular location: Membrane {ECO:0000250}; Multi-pass membrane protein {ECO:0000250}. Postsynaptic density membrane {ECO:0000250}.
Interaction partners:
- Voltage-dependent calcium channel gamma-1 subunit
- Glutamate receptor 2
- Glutamate receptor 4
- Voltage-dependent calcium channel gamma-4 subunit
- Protein cornichon homolog 2
- Glutamate receptor 3
- Glutamate receptor 1
- Voltage-dependent calcium channel gamma-3 subunit
- Voltage-dependent L-type calcium channel subunit beta-1
- Voltage-dependent calcium channel gamma-8 subunit
Sequence:
MSACGRKALTLLSSVFAVCGLGLLGIAVSTDYWLYLEEGVIVPQNQSTEIKMSLHSGLWRVCFLAGEERGRCFTIEYVMPMNTQLTSESTVNVLKMIRSATPFPLVSLFFMFIGFILNNIGHIRPHRTILAFVSGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISFLLTESAGVMSVYLFMKRYTAEDMYRPHPGFYRPRLSNCSDYSGQFLHPDAWVRGRSPSDISSEASLQMNSNYPALLKCPDYDQMSSSPC
Protein: Histone H1 (P53551)
Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Function: Could act as an H1-type linker histone. Has been shown to bind DNA.
Subcellular location: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00837}. Chromosome {ECO:0000255|PROSITE-ProRule:PRU00837}.
Interaction partners:
- Cyclin-dependent kinase 1
- Histone H3
- Histone H2A.Z
- Histone H2A.2
- Histone H2B.1
- Histone H2B.2
- Histone H4
- Histone H2A.1
- Replication factor A protein 2
- Importin subunit beta-1
Sequence:
MAPKKSTTKTTSKGKKPATSKGKEKSTSKAAIKKTTAKKEEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKKSPEVKKEKEVSPKPKQAATSVSATASKAKAASTKLAPKKVVKKKSPTVTAKKASSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKKKVKLST
Protein: Prolyl 4-hydroxylase 1 (AtP4H-1) (AtP4H1) (EC 1.14.11.2) (Q9ZW86)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in proline-rich peptide sequences of plant glycoproteins and other proteins. Hydroxylates preferentially prolines in second positions in the -Pro-Pro-Gly-triplets. Hydroxyprolines are important constituent of many plant cell wall glycoproteins such as extensins, hydroxyproline-rich glycoproteins, lectins and arabinogalactan proteins. Can hydroxylate collagen-like peptides and hypoxia-inducible transcription factor peptides.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000250|UniProtKB:Q24JN5}; Single-pass type II membrane protein {ECO:0000250|UniProtKB:Q24JN5}.
Interaction partners:
- Pyrroline-5-carboxylate reductase
- Proline iminopeptidase
- Proline dehydrogenase 2, mitochondrial
- Proline dehydrogenase 1, mitochondrial
- Phytanoyl-CoA dioxygenase
- Beta-1,2-xylosyltransferase
Sequence:
MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYLRDVSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDVKTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLRYEPQQFYKPHHDYFADTFNLKRGGQRVATMLMYLTDDVEGGETYFPLAGDGDCTCGGKIMKGISVKPTKGDAVLFWSMGLDGQSDPRSIHGGCEVLSGEKWSATKWMRQKATS
Protein: Candida glabrata strain CBS138 chromosome E complete sequence (Q6FVF6)
Organism: Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) (Yeast) (Nakaseomyces glabratus)
Interaction partners:
Sequence:
MSAQELGKKVDETNEQVAAKVEESKEQLVDKVDEVKQGSEEAADNAKAQVEEAKENAAEAVEEAKEKTAEAVEDAKAKTEEAKDKAAKKVEEVKKDSKKDSKKSEKENKNFFSKFTKKISSFFN
Protein: Ornithine aminotransferase, mitochondrial (EC 2.6.1.13) (Ornithine delta-aminotransferase) (Ornithine--oxo-acid aminotransferase) (Q9FNK4)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Mediates degradation of arginine for nitrogen recycling. Plays a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response.
Subcellular location: Mitochondrion matrix {ECO:0000269|PubMed:18419821}.
Interaction partners:
- Delta-1-pyrroline-5-carboxylate synthase A
- Delta-1-pyrroline-5-carboxylate synthase B
- Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial
- Arginase 1, mitochondrial
- Arginase 2, chloroplastic/mitochondrial
- Pyrroline-5-carboxylate reductase
- Argininosuccinate lyase, chloroplastic
- Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
- Ornithine transcarbamylase, chloroplastic
- Acetylglutamate kinase, chloroplastic
Sequence:
MAATTRRLLYYVSKRFSTAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAHNYHPVPVVFSRANGSTIWDPEGKRYIDFLAAYSAVNQGHCHPKIMKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMFGYDMVLPMNTGAEGVETALKLARKWGHEKKNIPKDEAIIVSCCGCFHGRTLAIVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEKIFKEKGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGLARSGKMLACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMASLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSAYDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLELDLPNLLKINSGKTPVSHITECDRCGRNLYA
Protein: FI20148p1 (Oo18 RNA-binding protein, isoform A) (Oo18 RNA-binding protein, isoform G) (Q9VCN7)
Organism: Drosophila melanogaster (Fruit fly)
Interaction partners:
- ATP-dependent RNA helicase me31b
- Translational regulator orb2
- Maternal effect protein oskar
- Fragile X messenger ribonucleoprotein 1 homolog
- LD37574p
- Poly
- Trailer hitch, isoform H
- polynucleotide adenylyltransferase
- Poly
- Protein cup
Sequence:
MPLLQQYDTPDCSGSGGNMRALSGGSTTELLQKHSISSYLDHHHQQQQQQQHHLQLQQHQQQHSLLERCNDDGLISFINDPITLNDLLGLCGASTANEVVGTGQTPSTSAPILGAGGGGRANGVTAGAATATGVGVGAGGTLPGPGVPSIQGGGGGGVVGQQTNASCNTSAANPSASFGGNGSSSDVNNLLLASAAAAAAAAAGDGAQLSANAAAYAPLTPSSTHSSASPGTKSNFDYFQFENVAQSNPLKAFQRTNISFDCSAPLSPSTPTSIYNRSFHSSPLVSDSSNSSSGIGLSMDSINMFYNQQQQQQQPEQQGYTSLGNSMGSGLGLSLANASTRSNSPESQNSSNSTTEQNLLDMINLLSVNSNKIPHQQQQQQQQQQQQQQQQQQNQQQLQVQQQHQLQQQFVNLNRNYEQQISANLGSQQHGFEHNGVGVGASSSGNENCFSQYNLENITSVDMELAKLQNLQRINTLKLLHAQAQQMPLINQLLQSYAGNAIGSVGGSNLGNLMSAGGSSLMTEMAGNVGGIITTNDGHLDRVAKFYKSSAALCDATCTWSGHLPPRSHRMLNYSPKVFLGGIPWDISEQSLIQIFKPFGSIKVEWPGKEQQAAQPKGYVYIIFESDKQVKALLSACVLQVDDSHCGRNYFFKISSRRIKSKDVEVIPWIIADSNFVRSSSQKLDPTKTVFVGALHGKLTAEGLGNIMDDLFDGVLYAGIDTDKYKYPIGSGRVTFSNFRSYMKAVSAAFIEIRTTKFTKKVQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPLTRNSKSQSLVGIGPSSSNVSLPFSGQRSIRDNRMGNGQHQQHQQHQYQQQKHRQLQEYSQPHSLNVMGNSGAANAAATSMVTLQQRQIHKVRIQRQQHQAI
Protein: Mothers against decapentaplegic homolog (MAD homolog) (Mothers against DPP homolog) (SMAD family member) (Q5U110)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Cytoplasm {ECO:0000256|RuleBase:RU361195}. Nucleus {ECO:0000256|RuleBase:RU361195}.
Interaction partners:
- E3 ubiquitin-protein ligase Smurf1
- Protein mothers against dpp
- Mothers against decapentaplegic homolog
- Mothers against decapentaplegic homolog
- receptor protein serine/threonine kinase
- E3 ubiquitin-protein ligase Su
- Transcriptional coactivator yorkie
- E3 ubiquitin-protein ligase Nedd-4
- HECT-type E3 ubiquitin transferase
- receptor protein serine/threonine kinase
Sequence:
MIFPREKKVLWRYASSNNPSNGVSAAPPAQPPRPPPPPHRPRPHQCTPSFGYSCNEEDSLAMRQTPLPPYSSIACGMDCSSSNSSSCGQSLSLSQGQGHNNNNSHPYRRLPNHMDVLPPPPSACDRCCTAPGYSCASSCDDMLIDGSDLDQDRSPDQGQVQPVDRRMISATTFTTMFRKCCGGATESTSGSTLTIPVSTSRATAHPPQTQAQNGKRFREDFEALMKQLKRKQRNELLLAVKSRLDPPTKTQRDVVEPTTTTAPTYLQCILIPCKTQTVWEPHVTASRLFFWRELWNAKELKRLPTCPAARDCIYMCCNPLHWFRILHQPETESPTPPYQRSKMLRLKDADFEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQVWCQIAYWEMAHRVGEFFHAKTNAVNIYTDGIVASEVDSMCLRDLTPAGNQIHSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLDRVCKVMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKRQDIMGCPCWLEVHFSHLR
Protein: Opioid binding protein/cell adhesion molecule-like preprotein isoform a (Opioid binding protein/cell adhesion molecule-like, isoform CRA_a) (cDNA FLJ76211, highly similar to Homo sapiens opioid binding protein/cell adhesion molecule-like(OPCML), mRNA) (A8K0Y0)
Organism: Homo sapiens (Human)
Subcellular location: Cell membrane {ECO:0000256|ARBA:ARBA00004609}; Lipid-anchor, GPI-anchor {ECO:0000256|ARBA:ARBA00004609}.
Interaction partners:
Sequence:
MGVCGYLFLPWKCLVVVSLRLLFLVPTGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDDRVTRVAWLNRSTILYAGNDKWSIDPRVIILVNTPTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVNSASRALACLWLSGTLLAHFFIKF
Protein: Deoxypodophyllotoxin synthase (EC 1.14.20.8) (2-oxoglutarate dependent dioxygenase) (A0A0N9HQ36)
Organism: Sinopodophyllum hexandrum (Himalayan may apple) (Podophyllum hexandrum)
Function: 2-oxoglutarate-dependent dioxygenase involved in the biosynthesis of etoposide, a chemotherapeutic compound of the topoisomerase inhibitor family. Catalyzes the conversion of yatein to deoxypodophyllotoxin. Can also use, to some extent, demethylyatein as substrate.
Interaction partners:
Sequence:
MGSTAPLRLPVIDLSMKNLKPGTTSWNSVRTQVREALEEYGCFEAVIDAVSPELQKAVCNKGHELLNLPLETKMLNGNKPEYDGFTSIPNLNEGMGVGRITDLEKVERFTNLMWPEGNKDFCETVYSYGKRMAEVDHILKMMVFESFGMEKHFDSFCESTNYLLHFMRYQQPGKDGRSPALSLHKDKSILTIVNQNDVKGLEFETKDGEWILPTADNHIVLLGDCFMAWSNGRLHSPLHRVTLVANQARLSTSSFSFPKDIIETPAELVDEEHPLLFNPFEITELLAYCFTKEGAKAVCDLKQYKAYTGA
Protein: Transcription initiation factor TFIID subunit 12 (TAFII30 alpha) (Transcription initiation factor TFIID 28-alpha kDa/22 kDa subunits) (p28-alpha/p22) (P49905)
Organism: Drosophila melanogaster (Fruit fly)
Function: TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors.
Subcellular location: Nucleus.
Interaction partners:
- SAGA factor-like TAF6
- Transcriptional adapter 1-2
- IP01149p
- Transcription initiation factor TFIID subunit 7
- Transcription initiation factor TFIID subunit 9
- Transcription initiation factor TFIID subunit 6
- Transcription initiation factor TFIID subunit 10
- Transcriptional adapter 2b
- TATA-box-binding protein
- SAGA complex subunit Spt3
Sequence:
MSDLFTTFDSNGVAEHHLHHNHNSTSSASGLLHDPPMASPSQHSPMTNNSNSSSQNGGPVSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTELVREVDTTTQLDEDVEELLLQIIDDFVEDTVKSTSAFAKHRKSNKIEVRDVQLHFERKYNMWIPGFGTDELRPYKRAAVTEAHKQRLALIRKTIKKY
Protein: Ras-like protein rasS (EC 3.6.5.2) (P32254)
Organism: Dictyostelium discoideum (Social amoeba)
Function: Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.
Subcellular location: Cell membrane {ECO:0000305}; Lipid-anchor {ECO:0000305}; Cytoplasmic side {ECO:0000305}.
Interaction partners:
- Ras guanine nucleotide exchange factor B
- Probable serine/threonine-protein kinase roco5
- Rac guanine nucleotide exchange factor B
- Uncharacterized protein
- Serine/threonine-protein kinase phg2
- Ras guanine nucleotide exchange factor C
Sequence:
MFNFKLVLVGPGGVGKSCLTIQFIAQKFVDEYDPTLEDSYRKQTTVDGEECLLDIYDTAGQEDFSAVRDQYMRTGEGFLCVYSITYLQSFKEIHRLHNHLLKVKDLDSVPFVLVGNKCDLNEYREVSTAEGEELAKKLNCKFLETSAKERINVSESFYELVREVKKARQSNQHSNSQEQNTDQPIKKKKSCNLL
Protein: ECF RNA polymerase sigma factor SigR (ECF sigma factor SigR) (Alternative RNA polymerase sigma factor SigR) (RNA polymerase sigma-R factor) (Sigma-R factor) (Q7AKG9)
Organism: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Extracytoplasmic function (ECF) sigma factors are held in an inactive form by an anti-sigma factor (RsrA) until released. Responds to thiol-oxidative stress, involved in regulation of about 30 genes and operons, including the thioredoxin system (trxB-trxA, trxC), ribosomal protein L31, RNA polymerase-binding protein RbpA and mycothiol (MSH) biosynthetic (mshA) and recycling genes (mca). In conjunction with its cognate anti-sigma factor RsrA may sense the intracellular level of reduced MSH.
Interaction partners:
- Anti-sigma factor RsrA
- DNA-directed RNA polymerase subunit beta'
- DNA-directed RNA polymerase subunit beta
- ECF sigma factor
- DNA-directed RNA polymerase subunit omega
- DNA-directed RNA polymerase subunit alpha
- ECF sigma factor
- ECF sigma factor
- RNA polymerase sigma factor
- Integral membrane protein
Sequence:
MGPVTGTDAGTEHGQAEQPEGRGTGAESTAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRILTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKQALQAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARDRGLVPAGAGESNEAKGSGS
Protein: Pde4dip protein (B7ZNY0)
Organism: Mus musculus (Mouse)
Subcellular location: Cytoplasm, cytoskeleton, microtubule organizing center, centrosome {ECO:0000256|ARBA:ARBA00004300}. Golgi apparatus {ECO:0000256|ARBA:ARBA00004555}.
Interaction partners:
Sequence:
MKRTDSGSICHHAPPPCWAHHAPRQSPRQPSSRERRPPERAGSWAVAAEEEEAASAAPCMRHYFGEDDGEMVPRTSSAAAFLSDTKDRGPPVQSQTWRSAERVPFGQAHSLRAFEKPPLVQTQALRDFEKHLNDLKKENFSLKLRIYFLEERMQQKYEVSREDVYKRNIELKVEVESLKRELQDRKQHLDKTWADAEDLNSQNEAELRRQVEERQQETEHVYELLGNKIQLLQEEPRLAKNEATEMETLVEAEKRCNLELSERWTNAAKNREDAAGDQEKPDQYSEALAQRDRRIEELRQSLAAQEGLVEQLSQEKQQLLHLLEEPASMEVQPVPKGLPTQQKPDLHETPTTQPPVSESHLAELQDKIQQTEATNKILQEKLNDLSCELKSAQESSQKQDTTIQSLKEMLKSRESETEELYQVIEGQNDTMAKLREMLHQSQLGQLHSSEGIAPAQQQVALLDLQSALFCSQLEIQRLQRLVRQKERQLADGKRCVQLVEAAAQEREHQKEAAWKHNQELRKALQHLQGELHSKSQQLHVLEAEKYNEIRTQGQNIQHLSHSLSHKEQLIQELQELLQYRDNADKTLDTNEVFLEKLRQRIQDRAVALERVIDEKFSALEEKDKELRQLRLAVRDRDHDLERLRCVLSANEATMQSMESLLRARGLEVEQLTATCQNLQWLKEELETKFGHWQKEQESIIQQLQTSLHDRNKEVEDLSATLLCKLGPGQSEVAEELCQRLQRKERMLQDLLSDRNKQAVEHEMEIQGLLQSMGTREQERQAAAEKMVQAFMERNSELQALRQYLGGKELMTSSQAFISNQPAGVTSIGPHHGEQTDQGSMQMPSRDDSTSLTAREEASIPRSTLGDSDTVAGLEKELSNAKEELELMAKKERESQMELSALQSMMAVQEEELQVQAADLESLTRNVQIKEDLIKDLQMQLVDPEDIPAMERLTQEVLLLREKVASVEPQGQEVSGNKRQQLLLMLEGLVDERSRLNEALQAERQLYSSLVKFHAQPENSERDRTLQVELEGAQVLRTRLEEVLGRSLERLSRLESLAAIGGATAGDETEDTSTEFTDSIEEEAAHTSHQQLIKVALEKSLATMETQNICLQPPSPVGEDSNRCLQEEMLHLRAEIHQHLEEKRKAEVELKELKAQIEEAGFSSVSHIRNTMLSLCLENAELKEQMGEAMSDGWEVEEDKEKGEVMLETVVAKGCLNENSLQAEFRKVQGKLKSAYNIINLLKEQLLLRSSEGNSKEMPELLVRLAREVDRMNTGLPSLGKHQHQEQENTTTARPGSRPQSLPLGAALSVDGYQLENKSQTQDSGHQPEFSLPGSTKHLRSQLAQCRQRYQDLQEKLLISEATVFAQANQLEKYRAVFSESLVKQDSKQIQVDLQDLGYETCGRSENEAEREETTSPECEEHNNLRPVVLMEGLCSEQGYLDPVLVSPPAKKPLENKPGKQEEFRAHGTPDDSSLLRKDIRDLKAQLQNANKVIQNLRSRVRSLSATSDYSSSLERPRKLRAVATLEGASPHSVTDEDEGWLSDGTGAFYPPGLQAKKDLESLIQRVSQLEAQLPKTGLEGKLAEELRCASWPGKYDSLIQDQARELSYLRQKIREGRGICYLLTQHAKDTVKSFEDLLRSNDIDYYLGQSFREQLAQGGQLTERLTSKLSTKDHKSEKEEAGLEPLALRLSRELQEKEKVIEVLQAKLDTRSLSPPSSHAVSDSHRSASTTSFLSDDIEACSDMDVASEYTHYDEKKPSPSHSGFHFHSIPKPASLSQTPMHSALPSFVPFSPSGPPLLGCCETPMVSLAEAQQELQMLQKQLGESVSIAPPASTSTLLSNQTEASSPHYINPAQPHTPTRSTIELGRILEPGYLGSSGQWDMMRPQKGSVSGELSSGSSMYQLNSKPTGADLLEEHLGEIRNLRQRLEESICVNDRLREQLQHRLSSTARENGSTSHFYSQGLESMPQLYNENRALREENQSLQTRLSHASRGHSQEVDHLREALLSSRSQLQELEKELEQQKAERQQLLEDLQEKQDEIVQFREERLSLQENNSRLQHKLALLQQQCEEKQQLSLSLQSELQIYESLCENPKKALKAFSLDSCHQVPGELSCLVAEIRALRGQLEQSIEVNNHLRLQLEQQMDRGAGKASLGPIAVGQSFPDKAEPANLHQGSAASPPVRDVGLNSPAMVLPNSSCSAPGSDHAIVTRTNNELSSDDSAAMKNPPKLEVDATDGPFANKHGRHVIGHVDDYDALQQQIGEGKLLVQKILSLMRSARSIPGQEAQGTEAPGNISAHELRSSAKALNHTLEESTSLLNMFWRAALPNTHGPVLVGKEGQLMEKELLDLRAQVSQQEQILQNTAARLKRANQRKKSMEQFIVSHLTRTHDVLKKARTNLEMKSFRALTCTPAL
Protein: OmpA family membrane protein (Q0PAR8)
Organism: Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Interaction partners:
- Membrane protein
- Tol-Pal system protein TolB
- Flagellar motor protein
- 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase
- Flagellar motor switch protein FliG
- Flagellar protein FliL
- GMP synthase
- Putative peptidyl-prolyl cis-trans isomerase Cbf2
- Secreted transglycosylase
- Inosine-5'-monophosphate dehydrogenase
Sequence:
MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDLKEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITNYKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLSKELQSKLDNNITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDPKIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRSFSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH
Protein: Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1 protein) (Q9D824)
Organism: Mus musculus (Mouse)
Function: Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex (By similarity).
Subcellular location: Nucleus {ECO:0000250}.
Interaction partners:
- Cleavage and polyadenylation specificity factor subunit 2
- Cleavage and polyadenylation specificity factor subunit 1
- pre-mRNA 3' end processing protein WDR33
- Cleavage and polyadenylation specificity factor subunit 3
- Cleavage and polyadenylation specificity factor subunit 4
- Symplekin
- Cleavage stimulation factor subunit 3
- Cleavage stimulation factor subunit 2
- Poly
- Cleavage and polyadenylation specificity factor subunit 5
Sequence:
MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIEEEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKAGGRVYGNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKEAALPSTKAEFTSPPSLFKTGLPPSRNSTSSQSQTSTASRKASSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPSWPSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPVPEQESTEAAPAE
Protein: Radial spoke head protein 6 homolog A (Radial spoke head-like protein 1) (Q8CDR2)
Organism: Mus musculus (Mouse)
Function: Essential for sperm flagellar assembly and male fertility.
Subcellular location: Cytoplasm, cytoskeleton, flagellum axoneme {ECO:0000269|PubMed:30185526, ECO:0000269|PubMed:30239614, ECO:0000269|PubMed:34871179}.
Interaction partners:
- Radial spoke head protein 9 homolog
- Radial spoke head protein 3 homolog B
- E3 SUMO-protein ligase RanBP2
- Dynein regulatory complex subunit 3
- Outer dynein arm-docking complex subunit 1
- Radial spoke head 1 homolog
Sequence:
MGEPPPNPDPSQTRRASQGSERARSQEYSQPLLTIPEDGLNRPPPQRGSRSSQGSQDLQGTGLPHWPQRSSLVPDVQGDEGTEYHQSMPLGYTPGFPMEFSQQGYLDDSRMMEQFPQGQDLLEQLESTYQGSASGILGQLNLYPREDEIFSQDTQHGPYLRDDPSLHLRPSDLGFMPIVGEVPDPEPRELAIQNAKAYLLRTSMSCNLSLYEHLVNLLTKILNQRPEDPLSILESLNRTMQWEWFHPKLDTLRDDPEMQPTYEMAEKQKALFIRGGGEGEQEMEEEVTDSPVPNIMETAFYFEQAGVGLSSDESFRIFLALKQLVEQQPIHMCRFWGKILGLSRSYLVAEVEFREGEEEGEEEEVEEMMEGGEVLETHGEEEGEEDEEKVVDSVPKPQWKPPPIIPKEESRSGTNKYLYFVCNEPGRPWTRLPHVTPAQIVCARKIKKFFTGFLDTPVISYPPFPGNEANYLRAQIARISAATHISPLGFYQFGEEEGDEEEEGGAGRDSFEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEELGEEEEKADEAMEEVEQEVGPPLLTPLSEDAEIMHLSPWTTRLSCSLSPQYSVAIVRSNLWPGAYAYATGKKFENIYIGWGHKYSPENFNPMLPALIQQEYPSGPEITEMSDPTVEEEQALKAAQEQALAAAEEEEEDEEEEEDEDLED