wanglab/gogpt-training-data huggingface dataset:
Protein: Amino acid transporter AVT6E (AtAvt6E) (Q9M8L9)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:27925655}; Multi-pass membrane protein {ECO:0000255}. Vacuole membrane {ECO:0000269|PubMed:27925655}; Multi-pass membrane protein {ECO:0000255}. Note=Predominantly located in endoplasmic reticulum membrane. {ECO:0000269|PubMed:27925655}.
Interaction partners:
- Partner of SLD five 1
- Syntaxin-52
- Aromatic aminotransferase ISS1
- Syntaxin-112
- Vesicle transport v-SNARE 13
- Chloride channel protein CLC-d
- Signal peptidase complex subunit 2
- Vesicle-associated membrane protein 713
- VAMP-like protein YKT61
Sequence:
MDSSYSVISKTSYVELQKPTVNGKPRNKLLPSDEESFVNDFDDARNGVGGEDADDLDFDVADYPLVHGKSSNQGSGIYGAVFNLTTSIIGAGIMALPATMKVLGLVLGFVLIILMALLSEISVELLVRFSVLYKSKSYGEVVQFALGKTARVLSEICIIVNNGGVLVVYLIIMGDVMSGSLHHIGVLDQWLGNGFWDHRKVLILIVMVIFLAPLCALNKIDSLSVTSAASVALAVVFVVVCFVVATIKLIEGTIDPPRLSPDFGSKQAILDLLVVIPIMSNAYVCHFNVQPIYNELEGRSPHKMNRVGRITTAICVVVYASTAVSGYLLFGKDTESDILTNFDQDLGIRFSSAVNYIVRIGYILHLVLVFPVIHFSLRETVNTLLFEGSPPLSESKKRSLGLTVVLLALIYIGSTMIPNIWTAFKFTGATSAVSLGFTFPALIALRLGKQSNSLSFVERSVSWLMLILAVVVSIVGTIGNIYSLESKSD
Protein: Uncharacterized protein ely5 (O94384)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Subcellular location: Cytoplasm {ECO:0000269|PubMed:16823372}. Nucleus {ECO:0000269|PubMed:16823372}.
Interaction partners:
- Nucleoporin nup107
- Nucleoporin nup85
- Protein transport protein sec13
- Nucleoporin nup132
- Nucleoporin nup131
- Nucleoporin seh1
- Probable nucleoporin C890.06
- Nucleoporin nup45
- Nucleoporin nup186
- Uncharacterized WD repeat-containing protein C4F10.18
Sequence:
MLKMEDDQFERFVGLFSMKDEDFPYNSQVTNEIQTFRKQQVDSQLFFDVLLSFIEGIEDPSSLYPPKSIDDLQSLFMIIENSNIDELKQQCFYYYLLKDWEKSETYSEQVSLPKNYQHLMDGYYYLDRLKFEEAINHLLLPDVLPNFPDKIIETLYSNEKYKFLIRFVSFVGPPLDTFRKEECYALSLVRYSFLASYHYMKKCTKPLVLWEEMIQLILESNDTQSCKLIVSLPLSQEECEVLFSLLRSKKEPLYLNTLLALLVESNNIQEALELSSNSTHLQKSAVNTYLHKLNSLSS
Protein: Calpastatin (Calpain inhibitor) (E9PCH5)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MNPTETKAVKTEPEKKSQSTKLSVVHEKKSQEGKPKEHTEPKSLPKQASDTGSNDAHNKKAVSRSAEQQPSEKSTEPKTKPQDMISAGGESVAGITAISGKPGDKKKEKKSLTPAVPVESKPDKPSGKSGMDAALDDLIDTLGGPEETEEENTTYTGPEVSDPMSSTYIEELGKREVTIPPKYRELLAKPIGPDDAIDALSSDFTCGSPTAAGKKTEKEESTEVLKAQSAGTVRSAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCGEDDETIPSEYRLKPATDKDGKPLLPEPEEKPKPRSESELIDELSEDFDRSECKEKPSKPTEKTEESKAAAPAPVSEAVCRTSMCSIQSAPPEPATLKGTVPDDAVEALADSLGKKEADPEDGKPVMDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKPLLPKESKEQLPPMSEDFLLDALSEDFSGPQNASSLKFEDAKLAAAISEVVSQTPASTTQAGAPPRDTSQSDKDLDDALDKLSDSLGQRQPDPDENKPMEDKVKEKAKAEHRDKLGERDDTIPPEYRHLLDDNGQDKPVKPPTKKSEDSKKPADDQDPIDALSGDLDSCPSTTETSQNTAKDKCKKAASSSKAPKNGGKAKDSAKTTEETSKPKDD
Protein: Fibulin-1 (D3ZQ25)
Organism: Rattus norvegicus (Rat)
Subcellular location: Secreted, extracellular space, extracellular matrix {ECO:0000256|ARBA:ARBA00004498, ECO:0000256|PIRNR:PIRNR036313}.
Interaction partners:
- Aggrecan core protein
- Basement membrane-specific heparan sulfate proteoglycan core protein
- A disintegrin and metalloproteinase with thrombospondin motifs 1
- Collagen alpha-1
Sequence:
MERPAPSRLVPLPLLLLGSLSLLAARANADISMEACCTEGNQMANQHRDCSLSYTSESKECRMVQEQCCHNQLEELHCATGINLASEPDGCASLHNYNSSLETIFIKRCCHCCMLGRAAQARGQTCEPNLMISYQCGLVFRACCVKGQENSDFVRGDGTDLQDPAKIPEEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVICSCFVGYQLQSDGVSCEDINECITGSHNCRLGESCINTVGSFRCQRDSSCGTGYELTEDNNCKDIDECETGIHNCPPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGKGHHCLNSPGSFRCECKAGYYFDGISRTCVDINECQRYPGRLCGHKCENTPGSYHCSCSAGFRLSVDGRSCEDVNECLNSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLSFECPENYRRSADTRCERLPCHENQECPRLPLRITYYHLSFPTNIQVPAVVFRMGPSSAVPGDSMQLAITAGNEEGFFTTRKLSPREDRHRPLHQVLPSHR
Protein: Rho GTPase-activating protein 28 (Rho-type GTPase-activating protein 28) (Q9P2N2)
Organism: Homo sapiens (Human)
Function: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state.
Interaction partners:
Sequence:
MEVEDSGGVVLTAYHSYARAQPPNAESRCAPRAAASHPLSRKSIPRCRRINRMLSNESLHPPAFSRSNSEASVDSASMEDFWREIESIKDSSMGGQEEPPPAEVTPVDEGELEAEWLQDVGLSTLISGDEEEDGKALLSTLTRTQAAAVQKRYHTYTQTMRKKDKQSIRDVRDIFGVSESPPRDTCGNHTNQLDGTKEERELPRVIKTSGSMPDDASLNSTTLSDASQDKEGSFAVPRSDSVAILETIPVLPVHSNGSPEPGQPVQNAISDDDFLEKNIPPEAEELSFEVSYSEMVTEALKRNKLKKSEIKKEDYVLTKFNVQKTRFGLTEAGDLSAEDMKKIRHLSLIELTAFFDAFGIQLKRNKTEKVKGRDNGIFGVPLTVLLDGDRKKDPGVKVPLVLQKFFEKVEESGLESEGIFRLSGCTAKVKQYREELDAKFNADKFKWDKMCHREAAVMLKAFFRELPTSLFPVEYIPAFISLMERGPHVKVQFQALHLMVMALPDANRDAAQALMTFFNKVIANESKNRMSLWNISTVMAPNLFFSRSKHSDYEELLLANTAAHIIRLMLKYQKILWKVPSFLITQVRRMNEATMLLKKQLPSVRKLLRRKTLERETASPKTSKVLQKSPSARRMSDVPEGVIRVHAPLLSKVSMAIQLNNQTKAKDILAKFQYENSHGSSECIKIQNQRLYEIGGNIGEHCLDPDAYILDVYRINPQAEWVIKPQQSS
Protein: Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase beta5 subunit (Acetyl-CoA carboxylase) (ACC) (EC 2.1.3.15) (Propionyl-CoA carboxylase) (PCC) (EC 2.1.3.-) (P9WQH7)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Function: Component of a biotin-dependent acyl-CoA carboxylase complex. This subunit transfers the CO2 from carboxybiotin to the CoA ester substrate. When associated with the alpha3 subunit AccA3, is involved in the carboxylation of acetyl-CoA and propionyl-CoA, with a preference for propionyl-CoA. Is also required for the activity of the long-chain acyl-CoA carboxylase (LCC) complex.
Interaction partners:
- Biotin-dependent acyl-coenzyme A carboxylase alpha3 subunit
- Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit
- Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase epsilon subunit
- Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit
- Conserved protein
- Biotin--[acetyl-CoA-carboxylase] ligase
- Nucleoside triphosphate pyrophosphatase
- propanoyl-CoA C-acyltransferase
- Acetyl-coenzyme A synthetase
- Biotin-dependent acetyl-/propionyl-coenzyme A carboxylase beta6 subunit
Sequence:
MTSVTDRSAHSAERSTEHTIDIHTTAGKLAELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLDDEFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPPKKHGNVPL
Protein: Dof zinc finger protein DOF4.4 (AtDOF4.4) (Q9SUA9)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Probable E3 ubiquitin-protein ligase EDA40
- Pollen Ole e 1 allergen and extensin family protein
- Defensin-like protein 97
- Uncharacterized protein
- SWI-SNF-related chromatin binding protein
- F-box/LRR-repeat protein 16
- F-box protein At1g47056
- Germin-like protein subfamily 2 member 2
Sequence:
MDNLNVFANEDNQVNGLKRPPPSRVCPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSCRKPKRLKVDQSSISEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLSELHGVTNLLPIQSFRTMDCLDFGDESFQQGYYDVGSNDLIDNPLINQSIGGYVDNLTSYCINQVEPKLQPRYEHES
Protein: T-box transcription factor 4 (T-box transcription factor TBX4) (F1R688)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|PROSITE-ProRule:PRU00201}.
Interaction partners:
- Homeobox protein.
- PDZ and LIM domain protein 7
- NK2 homeobox 5.
Sequence:
MLQEKASVVADEGMTVAQSGGRPELASDSSHLGLPTTPSNPQNNEPDQSIENIKVVLHDRELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLTDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNAFGSKNTAYCTHVFHETAFISVTSYQNHKITQLKIENNPFAKGFRGSDEGDLRVSRLQGKDYPVISKNMVRQRLISSHGHLSGKLSAGVLSSHPQVLSHYQYDSGVPLPNSDSQEALSNSFTSSREPSLLYHCFKHRDNPRHLELGCKRPYLDTTSSAVSEEHYFRSPPSYDSPLLSHPYCNEALGSREACMYGGLEGEGGGAVGTDDLPAPSLNCNMWASVQPYPRYGMQTVEAMQYQPFTAHFNSTASAASMVSHHSPSMQRPHPTPPDLVTFTTQRVLPPTPSSASTSPSGSGHHDRAHSSLFHRKAGSPLRSQRDFTGYSTHSPTPTREPAYQYQTGLSSVGPHWTDS
Protein: V-type proton ATPase subunit G (V-ATPase subunit G) (V-ATPase 13 kDa subunit) (Vacuolar proton pump subunit G) (Q9XZH6)
Organism: Drosophila melanogaster (Fruit fly)
Function: Subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (By similarity). V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment (By similarity). In enterocytes, acts as part of a pHCl-2 sensory pathway which mediates Tor-dependent larval growth and metabolism in response to zinc availability. Likely acts in maintaining enterocyte lysosomal acidification which consequently promotes Tor activation at the lysosome membrane.
Interaction partners:
- V-type proton ATPase subunit H
- V-type proton ATPase subunit B
- V-type proton ATPase subunit C
- V-type proton ATPase subunit E
- V-type proton ATPase subunit S1
- V-type proton ATPase subunit F 1
- V-type proton ATPase 16 kDa proteolipid subunit c
- V-type proton ATPase 16 kDa proteolipid subunit c
- V-type proton ATPase subunit d 1
- V-type proton ATPase catalytic subunit A isoform 2
Sequence:
MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEAKHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNYNHK
Protein: Pleckstrin homology-like domain family A member 1 (Proline- and glutamine-rich protein) (PQ-rich protein) (PQR protein) (T-cell death-associated gene 51 protein) (Q62392)
Organism: Mus musculus (Mouse)
Function: Seems to be involved in regulation of apoptosis. May be involved in detachment-mediated programmed cell death. May mediate apoptosis during neuronal development. May be involved in regulation of anti-apoptotic effects of IGF1. Required for TCR-induced apoptosis and expression of TNFRSF6/FAS in a T-cell hybridoma cell line. May be involved in translational regulation.
Subcellular location: Cytoplasm {ECO:0000250|UniProtKB:Q8WV24}. Cytoplasmic vesicle {ECO:0000250|UniProtKB:Q8WV24}. Nucleus, nucleolus {ECO:0000250|UniProtKB:Q8WV24}. Note=Colocalizes with intracellular vesicles. {ECO:0000250|UniProtKB:Q8WV24}.
Interaction partners:
- Aurora kinase A
Sequence:
MRRTPAAERLSELGFPPRRGRQEPPFPLGVTRGWGGWPIEKRREGPRPVPFSERSPEDGREQPAHGSGILWRVRTRLSLCRDPEPPPPPPPLCLLRVSLLCALRAGGRGSRWGEDGAGLLLLPPAGASGSLKAERSSSTPYAGRMLENSGCKALKEGVLEKRSDGLLQLWKKKCCILTEEGLLLIPPKQLQQQQQQQQPGQGTAEPSQPSGPTVASLEPPVKLKELHFSNMKTVDCVERKGKYMYFTVVMTEGKEIDFRCPQDQGWNAEITLQMVQYKNRQAILAVKSTRQKQQHLVQQQPPQTQQIQPQPQPQIQPQPQPQIQPQPQPQPQPQPQPQPQPQPQQLHSYPHPHPHPYSHPHQHPHPHPHPHPHPHPHPYQLQHAHQPLHSQPQGHRLLRSTSNSA
Protein: ATP synthase subunit a (ATP synthase F0 sector subunit a) (F-ATPase subunit 6) (P9WPV7)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Function: Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
Subcellular location: Cell membrane {ECO:0000255|HAMAP-Rule:MF_01393}; Multi-pass membrane protein {ECO:0000255|HAMAP-Rule:MF_01393}.
Interaction partners:
- ATP synthase subunit b-delta
- ATP synthase epsilon chain
- ATP synthase subunit c
- ATP synthase subunit beta
- ATP synthase subunit alpha
- ATP synthase gamma chain
- ATP synthase subunit b
- Probable cytochrome c oxidase subunit 3
- Uncharacterized protein Rv1507c
- Uncharacterized protein Rv1303
Sequence:
MTETILAAQIEVGEHHTATWLGMTVNTDTVLSTAIAGLIVIALAFYLRAKVTSTDVPGGVQLFFEAITIQMRNQVESAIGMRIAPFVLPLAVTIFVFILISNWLAVLPVQYTDKHGHTTELLKSAAADINYVLALALFVFVCYHTAGIWRRGIVGHPIKLLKGHVTLLAPINLVEEVAKPISLSLRLFGNIFAGGILVALIALFPPYIMWAPNAIWKAFDLFVGAIQAFIFALLTILYFSQAMELEEEHH
Protein: Chromodomain Y-like protein 2 (CDY-like 2) (Q8N8U2)
Organism: Homo sapiens (Human)
Subcellular location: Nucleus {ECO:0000250}.
Interaction partners:
- Histone H3.1
- Histone H3.2
- Histone H3.1t
- Histone H3-7
- Sterol carrier protein 2
- Hydroxysteroid dehydrogenase-like protein 2
Sequence:
MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSSGGDRATKTVSYRTTPSGLQIMPLKKSQNGMENGDAGSEKDERHFGNGSHQPGLDLNDHVGEQDMGECDVNHATLAENGLGSALTNGGLNLHSPVKRKLEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDKIYEV
Protein: Lipopolysaccharide 1,2-glucosyltransferase (EC 2.4.1.58) (UDP-glucose:(glucosyl) LPS alpha 1,2-glucosyltransferase) (P27129)
Organism: Escherichia coli (strain K12)
Function: Adds the glucose(II) group on the galactose(I) group of LPS.
Subcellular location: Cell inner membrane {ECO:0000305}. Note=Membrane associated. {ECO:0000250|UniProtKB:Q9ZIT6}.
Interaction partners:
- Lipopolysaccharide 1,6-galactosyltransferase
- Putative lipopolysaccharide heptosyltransferase 4
- Lipopolysaccharide core heptose
- Probable 3-deoxy-manno-octulosonic acid transferase
- Lipopolysaccharide core heptose
- Lipopolysaccharide core biosynthesis protein WaaS
- Lipopolysaccharide glucosyltransferase WaaO
- Lipopolysaccharide glucosyltransferase WaaG
- Lipopolysaccharide heptosyltransferase 3
- O-antigen ligase
Sequence:
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
Protein: Sedoheptulokinase (SHK) (EC 2.7.1.14) (Carbohydrate kinase-like protein) (Q9UHJ6)
Organism: Homo sapiens (Human)
Function: Acts as a modulator of macrophage activation through control of glucose metabolism.
Subcellular location: Cytoplasm {ECO:0000250}.
Interaction partners:
- Cystinosin
- Potassium voltage-gated channel subfamily A member 3
- FGGY carbohydrate kinase domain-containing protein
- Glycerol-3-phosphate dehydrogenase, mitochondrial
- Potassium voltage-gated channel subfamily A member 1
- Intermediate conductance calcium-activated potassium channel protein 4
- Potassium voltage-gated channel subfamily A member 6
Sequence:
MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQDVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFEPRAVSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVETLRSSGFPVHLLPDIAEPGSVAGRTSHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVLNISTSVQLAASMPSGFQPAQTPDPTAPVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEVEESTVYSRMIQAAVQQRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQEWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAALVMLRRHLNQKES
Protein: RicA (G5D8T1)
Organism: Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) (Neosartorya fumigata)
Interaction partners:
Sequence:
MMADKSKEVTELLKTLENDLNDRSLTSAQKTERLLRLREYGTNPSNAGLIYSEWGMKILGRYGVEGETPDVRRAALRCVANALLLDDKMRQIFADTGYGSKLAEMLKCDNSEDEMVISRILFICTYDTTMDYEQLIKNHSLGDNVNYQIIRHAKQFPKSGKKPLVQIDELALTDTLKLIFNVSKVYPDLSATFSPSIPYIFKIISRIDIPPKPLDGLLGYLLNCLSTLDLENKKGKHFESSPIFPTFNQNCNVDKLINILDQAVSAYDAQDLATKAIPLLHTLVTIYEVAPDGPRKYMQWLLLPEDSDRKQPIGKSDTLSSKLLRLSTTPYQNLKIAISELMFVLSGKDAENLTKNIGYGFAAGLLASRGIEIPQSASEAFATNSNSFDPEINPITGQRWDAEKQDTGPPMSREEKEREAERLFVLFERARATGVLNVENPVRQAVESGRFEELPDSDESD
Protein: Lipoxygenase 2.1, chloroplastic (EC 1.13.11.12) (LOX-100) (LOX2:Hv:1) (P93184)
Organism: Hordeum vulgare (Barley)
Function: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This enzyme is possibly involved in jasmonic acid synthesis. It exhibits linoleate 13-lipoxygenase and arachidonate 15-lipoxygenase activity.
Subcellular location: Plastid, chloroplast.
Interaction partners:
Sequence:
MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTLSADSNGAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILKTWLHVDLVSSELDPQTGQEREPISGAVKHSGRVDDEWDMYEATFKVPASFGPIGAVQVTNYHHSEMLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRELEILRGTGCGERKEHDRIYDYDVYNDLGNPDDDNNPTTRPVLGGKEHPYPRRCRTGRPRSKKDPFSEERSHKEHIYVPRDEAFTERKMGAFDTKKFMSQLHALTTGLKTAKHKSQSFPSLSAIDQLYDDNFRNQPVQPEGGKLRFVIDLLETELLHLFKLEGAAFLEGIRRVFKFETPEIHDRDKFAWFRDEEFARQTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRKLDGTTLYGSRALFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPNGELELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI
Protein: Ac1288 (Hook microtubule-tethering protein 3) (Q7TQ77)
Organism: Rattus norvegicus (Rat)
Interaction partners:
- FHF complex subunit HOOK-interacting protein 1B
- AKT-interacting protein
- Hook microtubule-tethering protein 2
- Cytoplasmic dynein 1 light intermediate chain 1
- Hook microtubule-tethering protein 1
Sequence:
MERLNQSDSIEDPNSPAGRRHLQLQTQLEQLQEETFSFKIRNSCLKLVIEGARMARTVKELAAKPDSLSSLPEPARAHTHMHSHTHTLTYMHTGKDSVLGPMGNYRPRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADEAQSLKDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLEEELRKANAARGQLETYKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDGLQKEKDRLRTERDSLKETIEELRCVQAQEGQLTTQDHLSHPSLPFHVYMSQSLASVTPHQYSILIRSPVVALCHGDPVPLEQQDWPFHTSQTIRPVQSPVSGTGWQLNWSALLCCPDEDQGLLSQVLQLVRAGLALPSSHPVGSFLRAGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKINQEGSDNEKIALLQSLLDDANLRKNELETENRLVNQRLLEVQSQVEELQKSLQDQGSKAEDVIRTLDPKQNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKTQRDMEEKYIVSAWYNMGMTLHKKAAEDRLASTGSGQSFLARQRQATSTRRSYPGHVQPATASLCFFLKFTLQKFHLALVTYKMVLNLNGFSILNSFNNKTKNTRKGTQSLVKLTCAVCQKDADEGAGEVLCWVRACSALAEDLSLVPAPLVRQLIMSSIKHLPEG
Protein: Sm-like protein LSM8 (AtLSM8) (U6 snRNA-associated Sm-like protein LSM8) (Q8VYI0)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs). LSM8 is essential for the formation of the nuclear LSM2-LSM8 complex involved in the accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression.
Subcellular location: Nucleus {ECO:0000269|PubMed:23221597, ECO:0000269|PubMed:23620288}.
Interaction partners:
- Sm-like protein LSM7
- Sm-like protein LSM36B
- Sm-like protein LSM6A
- Sm-like protein LSM3A
- Sm-like protein LSM3B
- Sm-like protein LSM4
- Sm-like protein LSM2
- Sm-like protein LSM5
- Small nuclear ribonucleoprotein Sm D2
- Probable small nuclear ribonucleoprotein G
Sequence:
MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
Protein: tRNA-splicing ligase RtcB (EC 6.5.1.8) (3'-phosphate/5'-hydroxy nucleic acid ligase) [Cleaved into: Mka hyp2 intein (EC 3.1.-.-)] (Q8TUS2)
Organism: Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Function: Essential for tRNA splicing and maturation. Acts by directly joining spliced tRNA halves to mature-sized tRNAs. Joins RNA with 2',3'-cyclic-phosphate or 3'-phosphate ends to RNA with 5'-hydroxy ends.
Interaction partners:
- Protein archease
- RNA 3'-terminal phosphate cyclase
- Translation initiation factor 1A
- Translation initiation factor 2 subunit alpha
- acetate--CoA ligase
- Acyl-CoA synthetase
- Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
- RNA 2',3'-cyclic phosphodiesterase
- Uncharacterized conserved protein
- SAM-dependent methyltransferase
Sequence:
MAPKSMLKHIRNNVVWELPEDYKGCMKVPGRIYATEKLIDGMEKGVFDQVANVACLPGIYGYSIALPDAHYGYGFPIGGVAAFDVEEGVVSPGGVGYDINCLAPGTKILTEHGCWVKVEDLPKMLTDQKLKVYDVDEGREDDSEIKFVMERGIEEDERAVVLVTESGLTIEGSEDHPVLTPEGYVELGEIEEGDLVVVYPFEGVEYEEKEGTILDESDFEDVDPQVLRYLEERDLIPLRWSDPKVGTLARILGFAMGDGHLGEQAGRLTLSFYGDERTLRELKRDLESLGVKANLHVRKRRYEIETASGRYEGEATSVELRVASRSFALLMEKLGMPRGRKVETPYKVPDWIKEAPLWVKRNFLAGLFAADGSVVKFKRYTPLPINLTQAKVEELEENLREFMNDVAKLLREFGIETTLYEVKSKKNVVYKLAIVGEENIKRFLGKVGYEYDPEKKVEGLAAYAYLKLKERVKKDRKEAAETAAEVYEETGSITKAHEAVADVVNRRFVERVVYDGGISSVRVPEDFPTFERFKEERVLAGGFVIEEVVEVKGVEPEYDRFYDIGVCHGAHNFIADGVVVHNCGVRVMKTDLTEDDVRPKLRELLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGNMTHAYETIGWEEYGPRDDVASKRAIERGRPQLGTLGSGNHFLEVQVVDEIYDKEAAEKMGIREEGQVTIMVHTGSRGFGHQVCSDHLRIMERSMRDVERRFGVRIPDRQLACAAMGTDEAKRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDEYGDADDMGIEVIYDIAHNMAKIEKHPVDGEERWLVVHRKGATRAFSEEALKKHGEPVPFEGLPQPVLIPGDMGTGSYILIGTEKAMEETWGSTCHGAGRTMSRAAAKRKFWGEDVARELERQGILVKAASMPVVAEEAPPAYKDVDEVVRAVAEAGISDPVVRLRPIGVVKG
Protein: Circadian locomoter output cycles protein kaput (Q5RIV1)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cytoplasm, cytosol {ECO:0000256|ARBA:ARBA00004514}.
Interaction partners:
- Cryptochrome-1
- Cryptochrome circadian regulator 3a.
- Cryptochrome circadian regulator 3b.
- Cryptochrome circadian regulator 1b.
- Cryptochrome 3
- CLOCK-interacting pacemaker a
- Cryptochrome circadian regulator 4
- CLOCK-interacting pacemaker b.
- Aryl hydrocarbon receptor nuclear translocator-like 1a
- Cryptochrome circadian regulator 5
Sequence:
MTSSIDRDDSSIFDGLMEEDEKDKAKRVSRNRSEKKRRDQFNVLIKELGTMLPGNTRKMDKSTILQKSIDFLRKHKEIAAQSESSEIRQDWKPPFLSNEEFTQLMLEALDGFFLAIMTDGNIIYVSESVTSLLEHLPSDLVDQNLLNFLPLGEHSEVYKALSTHMLEGETLTPDYLKTKNQLEFCCHMLRGTIDPKEPPVYEYVKFIGNFKSLNTVPNSTRNGFEGVIQRSLRHAFEDRVCFIATVRLAKPQFIKEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLETLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAEQRRELGIEESPPEISADKSQDSGSESQLNTSSLKEALERFDHSRTPSASSRSSRKSSSHTAVSDPTSTQTKLQTDRSTPPRQSVSAIEMTSQRRSSISSQSMSSQTTGQTMGTSLVSQPQQPQTLQATVQPVLQFSTQMDAMQHLKEQLEQRTRMIEANIQRQQEELRQIQDELQRVQGQGLQMFLQPSGGGLNLSSVQLTQSSSVQTAGTLSMQGAVVPTATLQSSLQSTHSSTQHTVTQHPQQTAVQQQNLLRDQTTNLNQQSQRSTHTLQSPQGALPASLYNTMMISQPTQANVVQISTSLAQNSSTSGAAVATFSQDRQIRFPATQQLLTKLVTGPMACGAVMVPTTMFMGQVVTAFAPQQGQPQTISIAQQPSAQTADQQTHTQAQTQAAATAQQQGQNQAQLTQQQTQFLQAPRLLHSNQSTQLILQAAFPLQQQGTFTTATQQQQQLHQQQQQLQQQQQLQQQQQQQQQQLQQQHQQQQQQLQQQHQQQQQQLAAHRSDSMTERSNPPPQ
Protein: Small ribosomal subunit protein RACK1 (Guanine nucleotide-binding protein subunit beta-like protein) (Receptor of activated protein kinase C homolog) (O18640)
Organism: Drosophila melanogaster (Fruit fly)
Function: Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes (By similarity).
Interaction partners:
- Large ribosomal subunit protein eL8
- Small ribosomal subunit protein uS15
- 40S ribosomal protein S24
- Small ribosomal subunit protein eS4
- Ubiquitin-ribosomal protein eL40 fusion protein
- Large ribosomal subunit protein eL20
- Small ribosomal subunit protein uS12
- Large ribosomal subunit protein eL19
- Small ribosomal subunit protein eS26
- Small ribosomal subunit protein eS10B
Sequence:
MSETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALCFSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFAGYSDNTIRVWQVSVSAH