wanglab/gogpt-training-data huggingface dataset:
Protein: Cullin-2 (AtCUL1) (Q9SRZ0)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes. Involved in ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).
Interaction partners:
- RING-box protein 1a
- SKP1-like protein 1B
- SKP1-like protein 1A
- SKP1-like protein 18
- SKP1-like protein 19
- SKP1-like protein 5
- SKP1-like protein 14
- SKP1-like protein 9
- SKP1-like protein 10
- SKP1-like protein 13
Sequence:
MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQKPPNDYSQQIYDRYGGVYVDYNKQTVLPAIREKHGEYMLRELVKRWANQKILVRWLSHFFEYLDRFYTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVIDVYCGNGMGELVKYEEDFESFLLEDSASYYSRNASRWNQENSCPDYMIKAEESLRLEKERVTNYLHSTTEPKLVAKVQNELLVVVAKQLIENEHSGCRALLRDDKMDDLARMYRLYHPIPQGLDPVADLFKQHITVEGSALIKQATEAATDKAASTSGLKVQDQVLIRQLIDLHDKFMVYVDECFQKHSLFHKALKEAFEVFCNKTVAGVSSAEILATYCDNILKTGGGIEKLENEDLELTLEKVVKLLVYISDKDLFAEFFRKKQARRLLFDRNGNDYHERSLLTKFKELLGAQFTSKMEGMLTDMTLAKEHQTNFVEFLSVNKTKKLGMDFTVTVLTTGFWPSYKTTDLNLPIEMVNCVEAFKAYYGTKTNSRRLSWIYSLGTCQLAGKFDKKTIEIVVTTYQAAVLLLFNNTERLSYTEILEQLNLGHEDLARLLHSLSCLKYKILIKEPMSRNISNTDTFEFNSKFTDKMRRIRVPLPPMDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEHLSKMFKPDIKMIKKRIEDLISRDYLERDTDNPNTFKYLA
Protein: Copper-dependent transcription factor 1 (J9VT33)
Organism: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii)
Function: Transcription factor that regulates copper acquisition and homeostasis, and which plays a central role in fungal pathogenesis during neurologic infection. The transcriptional regulation exerted by CUF1 is intrinsically complex since it acts as a dual sensor of copper levels, responsible for expression of a set of copper-specific copper transporters, CTR1 and CTR4, at low copper concentrations, and 2 metallothioneins, CMT1 and CMT2, at high copper concentrations. Positively regulates the expression of the copper acquisition factor BIM1 under copper-limiting conditions. Also positively regulates the expression of super oxide dismutase SOD2 isoform 2 during oxidative stress and copper-limiting conditions. Negatively regulates the expression of super oxide dismutase SOD1 during copper-limiting conditions. Regulates also ATM1, an ABC transporter with functions in the iron-sulfur clusters (ISC) export machinery, during copper stress. Another target of CUF1 is the gene encoding the laccase LAC1. Binds promoters of target genes at Cu-responsive elements (CuREs) that contain a variable A/T rich 5' region followed by the core consensus sequence 5'-G(G/C)CTC(A/G)-3'. Negatively regulates capsule biosynthesis, probably via modulating iron acquisition through the high-affinity iron uptake pathway.
Subcellular location: Nucleus {ECO:0000269|PubMed:21489137, ECO:0000269|PubMed:33567338}. Cytoplasm, cell cortex {ECO:0000269|PubMed:21489137}. Note=Upon copper depletion, localizes exclusively to the nucleus as an activator for CTR4 transcription, while it is located to the cell periphery in the presence of exogenous copper. {ECO:0000269|PubMed:21489137}.
Interaction partners:
Sequence:
MVLINDKKFACEKCIKGHRVSACTHTDRPLFEVKKKGRPSTQCRHCKEKRKSAGSSVHTKCQCGATDPKTLKDILASVNAAHAAANESGGASATANTSAEPEIETRKGQPGSKPTFPRGLKDVHEIAAAANALQGWGEDDQVVKAAERTVQALLNPCKCELGGPCTCCQIKTKPRRKHSGHEFENPASAGATPPGGGCCGSSVHSRDDVATRNSPTSINSSEAIHHPPQTAPMLHKTRLFSPYSTDLRRRDSSSSTGSKTPGWASPRAMRPPVSRIKPLTDMRRLMNAAVNQDGTLASEIPRSVVGLPTLPGIESFNTSANLENGEKSKDVDMPLAFPTSEDVVIGACMCGDDCSCPGCATHDHHNISPSNRTHDGSCGESCKGHNDCAHSIPIPSGVQSIAQLICIAASQVPPPPPNRTDSLNPHDTRILPPSVSLSEDVARTMGIVPLKPLECCGGKCGCPPGECACTKQCCGCCGECTCEKDEDTRMEEEGEYTESARDVTTSSCGGCKGKEKQSGFSDMMSPQIPQSVSPTSYHVPPLQPKPLNLPVSTIHHSTLSPSFNTPQPSPPAVSSPADSLSMAVHPSNGPNVRPVPMIQPRPILPKRASDTGLVMPQGSRPPSALGRSGSMTATKRSGTSTGVRRSNSDVRKVVGPSQPHHRPSIQSSSDRSFYIGSPSNQIAPGGVPMASAPSQMTAPLNSADSNSDLLAFIQQQWSADKTSNSNSDMNPSHPTMPVSLTAEPWAFPPQNETTDDSAPVPFDLDAFLMSIGVQPDGELRNDRPLSSQPPQSLMPNIPPTQPIAPLPPIPPSMSDVRPGYDMTFANFFLNSTPSGPSGPSAIPATNIPSRHTTPQASRPLTPPESSFTEPPRWKFPGDLGGEIPIWNGPEALEGFGVLGSPVSEKEEVTEESQNEKDIIDLSKPLDSAALTKIMKALEKQGGGQSSSQGAPSVANTDQQLQSLPALQTVPPVHPASVISPTRADPAHELDDMFSQFVTLDGTPIGSNNDGLGLNGGPGMMALPTNLSLGDELGFGGEMRWDQARMWSN
Protein: Transcription factor collier (Transcription factor knot) (P56721)
Organism: Drosophila melanogaster (Fruit fly)
Function: May act as a 'second-level regulator' of head patterning. Required for establishment of the PS(-1)/PS0 parasegmental border and formation of the intercalary segment. Required for expression of the segment polarity genes hedgehog, engrailed and wingless, and the segment-identity genes CAP and collar in the intercalary segment. Required at the onset of the gastrulation for the correct formation of the mandibular segment.
Subcellular location: Nucleus {ECO:0000305}.
Interaction partners:
- Ubiquitin fusion degradation protein 1 homolog
- Phospholipase A2 activator protein, isoform A
- Ubiquitin thioesterase Otu1
Sequence:
MEWGRKLYPSAVSGPRSAGGLMFGLPPTAAVDMNQPRGPMTSLKEEPLGSRWAMQPVVDQSNLGIGRAHFEKQPPSNLRKSNFFHFVIALYDRAGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRLIDSVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVISTQVAVDGPLLAISDNMFVHNNSKHGRRAKRLDTTEGTGNTSLSISGHPLAPDSTYDGLYPPLPVATPCIKAISPSEGWTTGGATVIIVGDNFFDGLQVVFGTMLVWSELITSHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGSPGRFVYVSALNEPTIDYGFQRLQKLIPRHPGDPEKLQKEIILKRAADLVEALYSMPRSPGGSTGFNSYAGQLAVSVQDGSGQWTEDDYQRAQSSSVSPRGGYCSSASTPHSSGGSYGATAASAAVAATANGYAPAPNMGTLSSSPGSVFNSTSMSAVSSTWHQAFVQHHHAATAHPHHHYPHPHQPWHNPAVSAATAAAV
Protein: Transmembrane protein 11 homolog, mitochondrial (Protein PMI) (Q8IQ56)
Organism: Drosophila melanogaster (Fruit fly)
Function: Plays a role in mitochondrial morphogenesis.
Subcellular location: Mitochondrion inner membrane {ECO:0000305|PubMed:21274005}; Multi-pass membrane protein {ECO:0000305|PubMed:21274005}.
Interaction partners:
- Mannose-P-dolichol utilization defect 1 protein homolog
- GDP-fucose protein O-fucosyltransferase 2
- Polypeptide N-acetylgalactosaminyltransferase 35A
Sequence:
MVSRNIESTSKVPTFHVIREVYDSSNAHERFEAELDKALEAKLDFIVIEPPRLGDETGRWIWVGNCLHKTAVATGVVSLVASLLWRDRPIIAAPACALSIFCTGLYTVSWNYDPCCQYQVENNDTVLEKLPLTDVSSPVILGYSPNSKTKYLHRSVSLLSAALCAWQIWRSYNRFVHSAGSG
Protein: Endogenous retrovirus group K member 6 Rec protein (Central open reading frame) (c-orf) (cORF) (Endogenous retrovirus K protein 6) (HERV-K(C7) Rec protein) (HERV-K(HML-2.HOM) Rec protein) (HERV-K108 Rec protein) (HERV-K_7p22.1 provirus Rec protein) (K-Rev) (Rev-like protein) (Rev/Rex homolog) (Q69383)
Organism: Homo sapiens (Human)
Function: Retroviral replication requires the nuclear export and translation of unspliced, singly-spliced and multiply-spliced derivatives of the initial genomic transcript. Rec interacts with a highly structured RNA element (RcRE) present in the viral 3'LTR and recruits the cellular nuclear export machinery. This permits export to the cytoplasm of unspliced genomic or incompletely spliced subgenomic viral transcripts.
Subcellular location: Cytoplasm. Nucleus, nucleolus. Note=Shuttles between the nucleus and the cytoplasm. When in the nucleus, resides in the nucleolus.
Interaction partners:
Sequence:
MNPSEMQRKAPPRRRRHRNRAPLTHKMNKMVTSEEQMKLPSTKKAEPPTWAQLKKLTQLATKYLENTKVTQTPESMLLAALMIVSMVSAGVPNSSEETATIENGP
Protein: C2H2-type domain-containing protein (G5EB21)
Organism: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Interaction partners:
Sequence:
MDDERSNPGKVRKKSTTVHRKSLSCEYCNRSFARLEHLQRHLRTHTKEKPFSCDICSKSFARSDLLVRHERLVHPAEAAANRENRNHSHTNHEVSQTQASIVQPSHHESRMLELVDAIPLQTQPVPPAPEVQVQPPPIVETAHFNPSWGYDLNLLSHAASHVALEGQQESLETLRKPSQNIQAPPPPPPLSHIPERGITDNYGVEPSILDLTDLGDPVQDFTVFLESVGLSSDWDSGIFSSVEEPLLPTSLPMDSKPPARESSRLGPDLMGDPRPAADEPPSFSNFGSRLPSLQPEAHDVDDRLGFGDEGPRPAWDISNADRQVFISKLEEFAYVLPKGFVPPSRHALSRFFAGYINGLNEHLPFIHVPTLSIAKCSPELTLALAAAGSHYRFENNRGFDLFHAAKAILLERLQRRDSKQVQFPTWNFLSPSSGFHNSRGSSANSNSPYQSHQHQSYVLYPVDSASLPPEDSYAHMEVIKTFLLLTVFASWERHPELLREILSLQSTLARLVREHGLTESNIGVDPNNWEEWVRRECNRRTKLIVYCFFNLHSIMYNIPPLILNAELKLNMPCSHDLWKASSAAQWRRLLRTRHGSEVSFQEAFTRLFTKSNITNTAPISPLGNYILIHALIQQIFFARQLCLSAPSLHGTSLRPDDLNILDSSLGSWKALWKRTPESSIDPQNPAGPIAFTSTALLGLAYIRLHVDLGPCRRLVTQDPVQIARALNDSPPIARSPRLIMALLHSAHALSIPVRLGIDFVARTHSFFWSIQHSLCSLECAFLLSRWLLSIPVTQAEQRLSEHERKLLLWIKSMMDETDMAVDPAGAPDFDFIANPYKAKQLSVAIVRVWARTFKGNTSWAIVDLVGQSLDAYADLLESQV
Protein: Rifin (Q8IIY4)
Organism: Plasmodium falciparum (isolate 3D7)
Interaction partners:
Sequence:
MKLHYTKMLLFFFLLNILLTSYYAHNKNKPSITSHHTPRYTSRVLSECDTESSIYDSDEEINSVKEIFERQTSQRLREYDERLQEKRQKRKEQRDKNIQKIIQKDKMEKNLAEKIEKGCLMCGCGLGSVAGSVGLFGGIAINIWKNVALDVGIKEAIKAAAAEISASANAAGAAEIMKLIKSKFVVSTLGGKDLGTYFATTSYKDVTNITQAVQQLYFEKCILPSSGSLRFPFADANRHIPICQSVWNQIQTVSQRGQYISPDEIIKRTVKTMVADAEEPAKAAAEAARESAINAIKARETGLINTVFMSKQTAIIASVVAILIIVLVMIIIYLVLRYRRKKKMNKKAQYTKLLKE
Protein: EEA1 protein (Q05D76)
Organism: Homo sapiens (Human)
Interaction partners:
Sequence:
MLRRILQRTPGRVGSQGSDLDSSATPINTVDVNNESSSEGFICPQCMKSLGSADELFKHYEAVHDAGNDSGHGGESNLALKRDDVTLLRQEVQDLQASLKEEKWYSEELKKELEKYQGLQQQEAKPDGLVTDSSAELQSLEQQLEEAQTENFNIKQMKDLFEQKAAQLATEIADIKSKYDEERSLREAAEQKVTRLTEELNKEATVIQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASSEATISQLRSELAKGPQEVAVYVQELQKLKSSVNELTQKKKKKKKKK
Protein: Irak1 protein (Q99J34)
Organism: Mus musculus (Mouse)
Interaction partners:
Sequence:
MDALEPADWCQFAALIVRDQTELRLCERSEQRTASVLWPWINRNARVADLVHILTHLQLLRARDIITAWHPPAPVVPPSTAAPRPSSISAGSEAGDWSPRKLQSSASTFLSPAFPGSQTHSESELLQVPLPVSLGPPLPSSAPSSTKQSSPESPVSGLQRAHPSPFCWPFCEISQGTCNFSEELRIGEGGFGCVYRAVMRNTTYAVKRLKEEADLEWTMVKQSFLTEVEQLSRFRHPNIVDFAGYCAESGLYCLVYGFLPNGSLEDQLHLQTQACSPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVLLDERLMPKLGDFGLARFSRFAGAKASQSSTVARTSTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVILETLAGQRAVRTQGAKTKYLKDLIEDEAEEAGVTLKSTQPTLWVGVATDAWAAPIAAQIYKKHLDSRPGPCPPQLGLALAQLACCCMHRRAKKRPPMTQRQNSQHSLLALWLYLGRCSVELSGKGLLLCWMSLRSQEQVYKRLEGLQAGPPWELEVAGHGSPSPQENSYMSTTGSAQSGDEPWQPLVVTTRAPAQAAQQLQRSPNQPVESDESVPGLSATLHSWHLTPGSHPSPASFREASCTQGGTTRESSVRSSPGFQPTTMEGSPTGSSSLLSSEPPQIIINPARQKMVQKLALYEEGVLDSLQLLSSGFFPGLDLEPEKSQGPEESDEFQS
Protein: Ethylene response sensor 2 (AtERS2) (EC 2.7.11.-) (Protein ERS2) (P93825)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Ethylene receptor related to bacterial two-component regulators. Acts as a redundant negative regulator of ethylene signaling.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
Interaction partners:
- Serine/threonine-protein kinase CTR1
- Protein REVERSION-TO-ETHYLENE SENSITIVITY1
- Ethylene-insensitive protein 2
- Protein RTE1-HOMOLOG
- Protein ETHYLENE INSENSITIVE 3
- ETHYLENE INSENSITIVE 3-like 1 protein
- Ethylene receptor 1
- Histidine kinase 5
- Ethylene response sensor 1
- EIN3-binding F-box protein 2
Sequence:
MLKTLLVQWLVFFFFFLIGSVVTAAEDDGSLSLCNCDDEDSLFSYETILNSQKVGDFLIAIAYFSIPIELVYFVSRTNVPSPYNWVVCEFIAFIVLCGMTHLLAGFTYGPHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLPLLLKAKVREFMLSKKTRELDREVGIIMKQTETSLHVRMLTTKIRTSLDRHTILYTTLVELSKTLGLKNCAVWIPNEIKTEMNLTHELRPRIDDENENEHFGGYAGFSIPISESDVVRIKRSEEVNMLSPGSVLASVTSRGKSGPTVGIRVPMLRVCNFKGGTPEAIHMCYAILVCVLPLRQPQAWTYQELEIVKVVADQVAVAISHAVILEESQLMREKLAEQNRALQVARENALRANQAKAAFEQMMSDAMRCPVRSILGLLPLILQDGKLPENQTVIVDAMRRTSELLVQLVNNAGDINNGTIRAAETHYFSLHSVVKESACVARCLCMANGFGFSAEVYRALPDYVVGDDRKVFQAILHMLGVLMNRKIKGNVTFWVFPESGNSDVSERKDIQEAVWRHCYSKEYMEVRFGFEVTAEGEESSSSSSGSNLEEEEENPSLNACQNIVKYMQGNIRVVEDGLGLVKSVSVVFRFQLRRSMMSRGGGYSGETFRTSTPPSTSH
Protein: Meiotically up-regulated gene 129 protein (O14278)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Has a role in meiosis.
Interaction partners:
Sequence:
MLWRILTCCKSPEEDKDEHKKKPPNVGHAHLSVVSPLNELASEKSRSSLCIEWTIDSLRQFVQQLSVRQNMSKDRREALTYFINSYNDLFHDVYYGDGRSMSKTEEAQTIVTFTIGSYLYKYTHPSELFWQRLSDNMANIEDDGTCTEAQLAFRKRAALSKLGHPAFHFLPMNNKESFHYAWSLFTSTYFQKAATVSPSPNQQPVDSVANPQLRKASEITTISSRSDVDILLGKFKALIQESPDEHCNSWIQRIYITCVLPRNHYIYLLNEQVDFLTSIEIMKNQVTEGKLCLLNEDLGTLN
Protein: SKP1-like protein 20 (SKP1-like 20) (Q651E8)
Organism: Oryza sativa subsp. japonica (Rice)
Function: Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, a RING-box and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends on the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Subcellular location: Nucleus {ECO:0000250|UniProtKB:Q9FHW7}.
Interaction partners:
- Os01g0185400 protein
- F-box protein
- Os02g0708300 protein
- Os01g0106800 protein
- COP9 signalosome complex subunit 5
- Cyclin-dependent kinases regulatory subunit 1
- Cullin-1
- Os01g0935300 protein
- Calcyclin-binding protein
- Os05g0425700 protein.
Sequence:
MAAEAETKAMITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEARGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Protein: Seipin (Bernardinelli-Seip congenital lipodystrophy type 2 protein homolog) (Q9Z2E9)
Organism: Mus musculus (Mouse)
Function: Plays a crucial role in the formation of lipid droplets (LDs) which are storage organelles at the center of lipid and energy homeostasis (By similarity).In association with LDAF1, defines the sites of LD formation in the ER (By similarity). Also required for growth and maturation of small nascent LDs into larger mature LDs (By similarity). Mediates the formation and/or stabilization of endoplasmic reticulum-lipid droplets (ER-LD) contacts, facilitating protein and lipid delivery from the ER into growing LDs (By similarity). Regulates the maturation of ZFYVE1-positive nascent LDs and the function of the RAB18-ZFYVE1 complex in mediating the formation of ER-LD contacts (By similarity). Binds anionic phospholipids including phosphatidic acid (By similarity). Plays an important role in the differentiation and development of adipocytes.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000269|PubMed:19574402}; Multi-pass membrane protein {ECO:0000255}. Lipid droplet {ECO:0000250|UniProtKB:Q96G97}. Note=Localizes at endoplasmic reticulum-lipid droplets (ER-LD) contact sites. {ECO:0000250|UniProtKB:Q96G97}.
Interaction partners:
- 1-acyl-sn-glycerol-3-phosphate acyltransferase beta
- Lipid droplet assembly factor 1
- Glycerol-3-phosphate acyltransferase 4
- Spartin
- Acyl-coenzyme A diphosphatase FITM2
- Phosphatidate phosphatase LPIN1
- Ras-related protein Rab-18
- Receptor expression-enhancing protein 1
Sequence:
MVNDPPVPALLWAQEVGHVLAGRARRLMLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFHYRTDCDSSTASLCSFPVANVSLAKSGRDRVLMYGQPYRVTLELELPESPVNQDLGMFLVTVSCYTRGGRIISTSSRSVMLHYRSQLLQVLDTLLFSSLLLFGFAEQKQLLEVELYSDYRENSYVPTTGAIIEIHSKRIQMYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGAVWPRHRFSLQVNIRQRDNSHHGAPRRISRHQPGQESTQQSDVTEDGESPEDPSGTEGQLSEEEKPEKRPLNGEEEQEPEASDGSWEDAALLTEANPPTSASASALAPETLGSLRQRPTCSSS
Protein: Ephrin-B1 (Q90Z33)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004370}.
Interaction partners:
Sequence:
MAGSDGSWKYYLWILTAMCRYALPAAKSLESVVWNSQNPKFVSGKGLVIYPEIGDKLDIICPKGDMGRPYEFYKLYLVKKEQAESCSTILDPNVLVTCNKPEKDIKFTIKFQEFSPNYMGLEFKRFTNYYITSTSNGTQEGLENREGGVCSTRSMKIIMKVGQDPNAPDPDLPDLPDRPYDNEIKDPTTSPSRKTERGRENEVDGNGSKMPGKDTRNQNNSPGSVEGIFGSKPALFAAIGAGCVIFLLIIIILIVLLLKLRKRTRKHSQPRGGTALSLSTLATPKGAAQAGSEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Protein: Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit PetG) (Cytochrome b6-f complex subunit V) (P0C391)
Organism: Oryza sativa subsp. indica (Rice)
Function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex.
Subcellular location: Plastid, chloroplast thylakoid membrane {ECO:0000255|HAMAP-Rule:MF_00432}; Single-pass membrane protein {ECO:0000255|HAMAP-Rule:MF_00432}.
Interaction partners:
- Cytochrome b6-f complex subunit 4
- Cytochrome b6
- Cytochrome f
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic
- Photosystem II CP47 reaction center protein
- Uncharacterized protein
- DUF1618 domain-containing protein
- DUF1618 domain-containing protein
- Cytochrome b-c1 complex subunit Rieske, mitochondrial
- DUF1618 domain-containing protein
Sequence:
MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Protein: Ion-translocating oxidoreductase complex subunit A (EC 7.-.-.-) (Nitrogen fixation protein RnfA) (Rnf electron transport complex subunit A) (P0CZ13)
Organism: Rhodobacter capsulatus (Rhodopseudomonas capsulata)
Function: Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane (By similarity). Required for nitrogen fixation. Involved in electron transfer to nitrogenase.
Subcellular location: Cellular chromatophore membrane {ECO:0000250|UniProtKB:D5ARY9, ECO:0000255|HAMAP-Rule:MF_00459}; Multi-pass membrane protein {ECO:0000255|HAMAP-Rule:MF_00459}.
Interaction partners:
Sequence:
MQDFLLVLLSTALVNNVVLVKFLGLCPFMGVSRKTDAAIGMGLATTFVITVASAACWLVEALILEPLDLKFLRILSMILVIAAIVQFIETVMRKVTPDLHKALGIYLPLITTNCAVLGLPLMYIQGHLSLAMSTLSGFGASVGFTLVLVIFAGMRERLAQLSVPAAFAGTPIAFVSAGLLGLAFMGFAGLVHV
Protein: DUF1547 domain-containing protein (Q824H6)
Organism: Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) (Chlamydophila caviae)
Interaction partners:
Sequence:
MTSPINNPSTTNVTTTTTSTPVVTTSTSFGGHVVSTTGTGALETTAQTVNTTAEQAVAQAESDSGAVIFTTQRDVSTTAPTTGGSASTATAASLLGTHILGTGRARTDSTSSSDSSISDTSTTSSTQDTGATGETQDAGATGETQDAGATGEAGGTQEASGDVDLGDLAGLRGSEAADGAERAEGPGGLPSMALPKYDPTDKASIIKFLSTPSVQAKLQTKAGHIVFMDEARGSFIFVRNGDWSTAESIAVTNGKTKEPITDVKDLEMCIAKFCVGYESMQADWSNNIQPRVAGQTGETGHYDHLLMSMKFKTTVLYGPWNSKESSSGYTPSVWRRGTKCDSGPIWGDVGGLKGINWNNVAKPDATAFSRETAAPAQPQPGPYTPPVINVNLGGISTNVNVTGGTTTTTVTTSPTPDMSEVDSTAGFDEIDGLSTQDESTETDIDDVETQSTSTQYEDTLHYESGGEEVDNLAPAPLPPGPPPPAKGGVNITGMPAANLQQILNNVREHLDTVYDQNGVHHEGNQDLGTVVRTSENGTYKPTVLLKNDQGDGGRGVQRSNDDDGGELGNILNRVREHLDVVYPESNEGEPIPVNQNLGDVIQAVESGNTPKPTQPEGVFVAKKVNLDGDGNIVGGNARTSSESRASNLMSAAGGEGAEGLEHLLPQLRSHLDDAFDQQGNLVGAPGTNVGSLIKAFQERTGSGGIVAPLPASVVTSSSAPQQSATVSDLPKAQTAETTTPGGSPDLHGAAKGVADSLSNLLQAATPSTTSTTVSSPAPRQETATSTSVAGTRGTATPTTGGSPSGIPGAAANVTATLSSVANKIALFEKGARLQEALDSADTESTQGKQLLEAARNTTTMLSKTLSKVTGSPPSPPQRHS
Protein: Rho guanine nucleotide exchange factor 2, isoform H (A0A0B4LFF8)
Organism: Drosophila melanogaster (Fruit fly)
Subcellular location: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}. Membrane {ECO:0000256|ARBA:ARBA00004370}.
Interaction partners:
Sequence:
MDDPSIKKRLLDLYTDEHEYDEVQEIPEESSIQPPETSTSHTSTNGSSHSGPGTATGPGATSAGPSAGAPQSPVIVVDSVPELPAPKQKSVKNSKSKQKQKQLANKSKIPRSPSLASSLSSLASSLSGHRDRDKDRDKDRENQNAVPPQTPPLPPSYKQNQMNGDSTAAAGGGVSAPATPTTANNNNASHNNGSIMGGGVQLNQSDNSNPVLQAPGERSSLNLTPLSRDLSGGHTQESTTPATTPSTPSLALPKNFQYLTLTVRKDSNGYGMKVSGDNPVFVESVKPGGAAEIAGLVAGDMILRVNGHEVRLEKHPTVVGLIKASTTVELAVKRSQKLTRPSSVSVVTPSTPILSGRDRTASITGPQPVDSIKRREMETYKIQTLQKMLEQEKLNLERLKSDQNNPSYKLSEANIRKLREQLHQVGAEQQRMSHQAESMSQSMHQHTSTPTSQQFFHPHQQQHRFKETGPTSKGKNKFLISRSLIEEDVPPPLPQRNPPRQLNLDLKNGNASPGGSHLVAPVSDLDRATSPQLNRSQQQQLPSSTDNSPSNAKSKRSKIKTKALSDPKMSTQMFLQMESASAAGAAGGSIEVDGGPPPLPPRLPGMMTEDMSRGSCQNLAQPNSVGTAFNYPLVSTTTAVQNDNLNIAFPLSQRPNIVQQLQQYQQQQQHQMSGGQATGALGQTPNLGKNKHRRVGSSPDNMHPRHPDRITKTTSGSWEIVEKDGESSPPGTPPPPYLSSSHMTVLEDPNENNRGAAAAGPGVFIESHQFTPMAGASSPIPISLHSSHMHAAQSNDTQKEIISMEDENSDLDEPFIDENGPFNNLTRLLEAENVTFLAIFLNYVISNSDPAPLLFYLITELYKEGTSKDMRKWAYEIHSTFLVPRAPLSWYRQDESLAREVDNVLQLEYDKVEILRTVFLRSRKRAKDLISEQLREFQQKRTAGLGTIYGPTDDKLAEAKTDKLREQIIDKYLMPNLHALIEDENGSPPEDVRKVALCSALSTVIYRIFNTRPPPSSIVERVHHFVSRDKSFKSRIMGKNRKMNVRGHPLVLRQYYEVTHCNHCQTIIWGVSPQGYHCTDCKLNIHRQCSKVVDESCPGPLPQAKRLAHNDKISKFMGKIRPRTSDVIGNEKRSRQDEELDVELTPDRGQASIVRQPSDRRPDANISIRSNGNTSCNTSGLNTTDLQSSFHGSCANDSINPGGGAGCNMDLSTSVASTTPSTSGSVAAGLSAFAELNALDTVDKEARRERYSQHPKHKSAPVSVNRSESYKERLSNKRNRNSRRKTSDPSLSSRPNDEQLDLGLSNATYVGSSNSSLSSAGGSESPSTSMEHFAAPGAAGGVQVPPMGLNQNQHPHLLIQQHAQQYCQQDSFQAGLAGAAGSSAASNSSFWNAGHPLPVARWTLESEDEDDVNEADWSSMVAAEVLAALTDAEKKRQEIINEIYQTERNHVRTLKLLDRLFFLPLYESGLLSQDHLLLLFPPALLSLREIHGAFEQSLKQRRIEHNHVVNTIGDLLADMFDGQSGVVLCEFAAQFCARQQIALEALKEKRNKDEMLQKLLKKSESHKACRRLELKDLLPTVLQRLTKYPLLFENLYKVTVRLLPENTTEAEAIQRAVESSKRILVEVNQAVKTAEDAHKLQNIQRKLDRSSYDKEEFKKLDLTQHHLIHDGNLTIKKNPSVQLHGLLFENMIVLLTKQDDKYYLKNLHTPLSITNKPVSPIMSIDADTLIRQEAADKNSFFLIKMKTSQMLELRAPSSSECKTWFKHFSDVAARQSKNRSKNASSNHDTSISDPALAAIPHSNTKESLELSTDTVQPLAATATLTTTPLAPMLPIATVTPAPATNNSNVSSLTGVQLRNPQRDATASESDADYVNTPKPRSSQNEVNRTMSIRSTGEPIQKYSANGTEANDVTLRHSQSTRESVRPGSTGEERNSTYGMVGGNSKRDSASIVCSNNSNNTRTLLMQSPLVDPTAIQVSISPAHTAEPVLTPGEKLRRLDASIRNDLLEKQKIICDIFRLPVEHYDQIVDIAMMPEAPKDSADIALAAYDQIQTLTKMLNEYMHVTPEQEVSAVSTAVCGHCHEKEKLRKKVAPSSSFSSSPPPLPPPNRQHAQAQAQIPPSRLMPKLQTLDLDEVAIHEDDDGYCEIDELRLPAIPSKPHERPTTPLAPFNTEPKTSQSVIDASKRQSTDAVPEGLLEQEPLEGDKTETKGEDNEVKTVPSDKLSESCNEERQCVEADITKEVADPTTSKNEAAASVDELPSQSREIKTAENASKSVADKKEDNEETIEEGVASTVDSSTQTSPTESPKETDKLTGGSSSTCGPNRIQHASVLEPSVPCHALSSIVTILNEQISMLLPKINERDMERERLRKENQHLRELLSALHDRQRVDEVKETPFDLKKLMHAEDVEFDDDIDAISNSSLTPTPTPIPTASPSASGQVETAEAMRITSTEDEE
Protein: Ribonucleoprotein PTB-binding 1 (Protein raver-1) (Q8IY67)
Organism: Homo sapiens (Human)
Function: Cooperates with PTBP1 to modulate regulated alternative splicing events. Promotes exon skipping. Cooperates with PTBP1 to modulate switching between mutually exclusive exons during maturation of the TPM1 pre-mRNA (By similarity).
Subcellular location: Nucleus {ECO:0000250}. Cytoplasm {ECO:0000250}. Note=Nuclear, in perinucleolar structures. Shuttles between nucleus and cytoplasm. Cytoplasm, at focal contacts and cell-cell contacts. Associated with myotubes during muscle differentiation (By similarity). {ECO:0000250}.
Interaction partners:
- Vinculin
- Ribonucleoside-diphosphate reductase subunit M2
- Polypyrimidine tract-binding protein 1
- Polypyrimidine tract-binding protein 2
- Heterogeneous nuclear ribonucleoprotein D-like
- CCR4-NOT transcription complex subunit 7
- Heterogeneous nuclear ribonucleoproteins C1/C2
- Protein Tob1
- NADPH-dependent diflavin oxidoreductase 1
- Calcium homeostasis endoplasmic reticulum protein
Sequence:
MAADVSVTHRPPLSPKSGAEVEAGDAAERRAPEEELPPLDPEEIRKRLEHTERQFRNRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAPPAMPLLNGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLRGSGLRGPLSHFYSGSPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKVRAGGGDMQGWEAPAPQRPLTRPALPSVSRPHWAARNAALPTCCPRPSPAQKAAMWASTPRASAATTRTPT
Protein: Cell wall synthesis protein CwsA (Cell wall synthesis and cell shape protein A) (P9WJF3)
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Function: Required for regulated cell division, cell wall synthesis and the maintenance of cell shape.
Subcellular location: Cell membrane {ECO:0000305|PubMed:23002219}; Single-pass membrane protein {ECO:0000305|PubMed:23002219}. Note=Localizes to poles and midcell sites.
Interaction partners:
- Cell wall synthesis protein Wag31
- Cell division protein CrgA
- Peptidyl-prolyl cis-trans isomerase A
Sequence:
MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRS