wanglab/bioreason-pro-rl-reasoning-data huggingface dataset:
Protein: Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (IDH-III) (Isocitric dehydrogenase 3) (NAD(+)-specific ICDH 3) (O81796)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Performs an essential role in the oxidative function of the citric acid cycle.
Subcellular location: Mitochondrion {ECO:0000269|PubMed:14671022}.
Sequence: MARRSVSIFNRLLANPPSPFTSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEEVIESVKRNKVCLKGGLATPVGGGVSSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAVIAALE
InterPro domains: - IPR004434: Isocitrate dehydrogenase NAD-dependent (family) [37-366]
- IPR024084: Isopropylmalate dehydrogenase-like domain (domain) [40-363]
Interaction partners: - Peroxisomal isocitrate dehydrogenase
- Cytosolic isocitrate dehydrogenase
- Isocitrate dehydrogenase, chloroplastic/mitochondrial
- 2-oxoglutarate dehydrogenase, mitochondrial
- 2-oxoglutarate dehydrogenase, mitochondrial
- Aconitate hydratase 1
- Isocitrate dehydrogenase catalytic subunit 5, mitochondrial
- Isocitrate dehydrogenase catalytic subunit 6, mitochondrial
- Aconitate hydratase 2, mitochondrial
- Aconitate hydratase 3, mitochondrial
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0043167 (ion binding), GO:0016491 (oxidoreductase activity), GO:0043169 (cation binding), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0046872 (metal ion binding), GO:0046914 (transition metal ion binding), GO:0004448 (isocitrate dehydrogenase [NAD(P)+] activity), GO:0008270 (zinc ion binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0044238 (primary metabolic process), GO:0006091 (generation of precursor metabolites and energy), GO:0006099 (tricarboxylic acid cycle), GO:0015980 (energy derivation by oxidation of organic compounds), GO:0045333 (cellular respiration), GO:0009060 (aerobic respiration)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0005739 (mitochondrion), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: Fructoselysine 6-phosphate deglycase (EC 3.5.-.-) (P0AC00)
Organism: Escherichia coli (strain K12)
Function: Catalyzes the reversible conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine. Functions in a fructoselysine degradation pathway that allows E.coli to grow on fructoselysine or psicoselysine.
Sequence: MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLVEY
InterPro domains: - IPR035490: GlmS/FrlB, SIS domain 2 (domain) [196-334]
- IPR046348: SIS domain superfamily (homologous_superfamily) [16-338]
- IPR001347: SIS domain (domain) [35-169]
Interaction partners: - Fructoselysine 6-kinase
- Probable fructoselysine/psicoselysine transporter FrlA
- Fructoselysine 3-epimerase
- Probable fructoselysine utilization operon transcriptional repressor
- Fructose-like permease IIC component 1
- Clamp-binding protein CrfC
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0005515 (protein binding), GO:0042802 (identical protein binding), GO:0016769 (transferase activity, transferring nitrogenous groups), GO:0008483 (transaminase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0009058 (biosynthetic process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044281 (small molecule metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0044249 (cellular biosynthetic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:1901576 (organic substance biosynthetic process), GO:1901564 (organonitrogen compound metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0046483 (heterocycle metabolic process), GO:0055086 (nucleobase-containing small molecule metabolic process), GO:1901566 (organonitrogen compound biosynthetic process), GO:1901362 (organic cyclic compound biosynthetic process), GO:0044271 (cellular nitrogen compound biosynthetic process), GO:0009112 (nucleobase metabolic process), GO:0072527 (pyrimidine-containing compound metabolic process), GO:0018130 (heterocycle biosynthetic process), GO:0046112 (nucleobase biosynthetic process), GO:0006206 (pyrimidine nucleobase metabolic process), GO:0072528 (pyrimidine-containing compound biosynthetic process), GO:0019856 (pyrimidine nucleobase biosynthetic process), GO:0006207 ('de novo' pyrimidine nucleobase biosynthetic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure)
Protein: POM121 and ZP3 fusion (C9J370)
Organism: Homo sapiens (Human)
Function: Not known
Sequence: MVCSPVTLRIAPPDRRFSRSAIPEQIISSTLSSPSSNAPDPCAKETVLSALKEKKKKRTVEEEDQIFLDGQENKRRPSLSLSPRLVQWCNFGSLHPLPPRFKRFSCLSLPSRWITGVHCCTQLIFVFLVETRFHHVCQASLELLTSSDPPTLASQSAGIMGVSHGARPTCLALTPFCFLPSCLVDGLTDASSAFKVPRPGPDTLQFTVDVFHFANDSRNMIYITCHLKVTLAEQDPDELNKACSFSKPSN
InterPro domains: - IPR042235: Zona pellucida, ZP-C domain (homologous_superfamily) [134-250]
- IPR055355: ZP-C domain (domain) [188-244]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0050789 (regulation of biological process), GO:0022414 (reproductive process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0000003 (reproduction), GO:0032501 (multicellular organismal process), GO:0019953 (sexual reproduction), GO:0048869 (cellular developmental process), GO:2000243 (positive regulation of reproductive process), GO:0048856 (anatomical structure development), GO:0022412 (cellular process involved in reproduction in multicellular organism), GO:2000241 (regulation of reproductive process), GO:0040017 (positive regulation of locomotion), GO:0050794 (regulation of cellular process), GO:0021700 (developmental maturation), GO:0032504 (multicellular organism reproduction), GO:0003006 (developmental process involved in reproduction), GO:0048609 (multicellular organismal reproductive process), GO:0040012 (regulation of locomotion), GO:0048522 (positive regulation of cellular process), GO:0007276 (gamete generation), GO:0007281 (germ cell development), GO:2000145 (regulation of cell motility), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0048469 (cell maturation), GO:0048515 (spermatid differentiation), GO:0060046 (regulation of acrosome reaction), GO:0032886 (regulation of microtubule-based process), GO:0048240 (sperm capacitation), GO:1901317 (regulation of flagellated sperm motility), GO:2000147 (positive regulation of cell motility), GO:0007283 (spermatogenesis), GO:0071695 (anatomical structure maturation), GO:1902019 (regulation of cilium-dependent cell motility), GO:2000155 (positive regulation of cilium-dependent cell motility), GO:0060632 (regulation of microtubule-based movement), GO:0007286 (spermatid development), GO:0048232 (male gamete generation), GO:0003352 (regulation of cilium movement), GO:0060295 (regulation of cilium movement involved in cell motility)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Uncharacterized protein (Q57TY3)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Function: Not known
Sequence: MVFSTHGIRVVYNTANVDRSLYAVVHCSDGKYAEVSKDHLNRLKFIEKSSEEEDIEFDYPEAVLESLAQWTLKYGMDGVAVSSTVRPCIYRNVQHVLKDDWEREFFTTRLMNDLNIMHYLQTINAAEKYEMKGFHDFLCVCLSCKLRNEEDTELVHKIMGLEDFVEIGPSDLDEAACRYTWLDQAIKPTVRR
InterPro domains: - IPR011333: SKP1/BTB/POZ domain superfamily (homologous_superfamily) [24-184]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050789 (regulation of biological process), GO:0065007 (biological regulation), GO:0019222 (regulation of metabolic process), GO:0060255 (regulation of macromolecule metabolic process), GO:0010468 (regulation of gene expression), GO:0010608 (post-transcriptional regulation of gene expression)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0042995 (cell projection), GO:0005737 (cytoplasm), GO:0120025 (plasma membrane bounded cell projection), GO:0099568 (cytoplasmic region), GO:0043227 (membrane-bounded organelle), GO:0005929 (cilium), GO:0032838 (plasma membrane bounded cell projection cytoplasm), GO:0097014 (ciliary plasm)
Protein: Serine protease inhibitor swm-1 (Sperm activation without mating protein 1) (Q18158)
Organism: Caenorhabditis elegans
Function: Serine protease inhibitor (Probable). Probably by inhibiting serine protease tyr-5 in males, prevents the maturation of spermatids into mature motile spermatozoa until their transfer into a hermaphrodite. Also required for efficient sperm transfer and thus for male fertility.
Subcellular location: Secreted {ECO:0000269|PubMed:30470702}. Cytoplasmic vesicle, secretory vesicle lumen {ECO:0000269|PubMed:30470702}. Note=In males, partially colocalizes with tyr-5 in vesicles near the apical membrane of cuboidal cells. Secreted predominantly by muscles into the pseudocoelom where it enters the seminal vesicle in males and the spermatheca in hermaphrodites. Localizes around the spermatocytes at the late stages of meiosis. During mating, transferred together with sperm into hermaphrodites where it spreads into the uterus. Also, is uptaken by coelomocytes. {ECO:0000269|PubMed:30470702}.
Sequence: MRILVIITCIVAVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMNTCDCKDGFVRNSLGKCVEVSECTKETTKCPENETFFGCGTACEATCEKPNPTVCTKQCIVNVCQCSKGFVRHGLRCIDKKDCPK
InterPro domains: - IPR051368: Serine Protease Inhibitor-like TIL Domain (family) [76-135]
- IPR036084: Serine protease inhibitor-like superfamily (homologous_superfamily) [19-134]
- IPR002919: Trypsin Inhibitor-like, cysteine rich domain (domain) [20-133]
Interaction partners: - Trypsin-like protease try-5
- Spermatocyte protein spe-8
- Serine/threonine-protein kinase spe-6
- Transporter
- Spermatocyte protein spe-27
- Spermatogenesis-defective protein spe-17
- Spermiogenesis protein SPE-29
- Peptidase S1 domain-containing protein
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0098772 (molecular function regulator activity), GO:0030234 (enzyme regulator activity), GO:0140678 (molecular function inhibitor activity), GO:0061134 (peptidase regulator activity), GO:0004857 (enzyme inhibitor activity), GO:0061135 (endopeptidase regulator activity), GO:0030414 (peptidase inhibitor activity), GO:0004866 (endopeptidase inhibitor activity), GO:0004867 (serine-type endopeptidase inhibitor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0002376 (immune system process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0009605 (response to external stimulus), GO:0051707 (response to other organism), GO:0006955 (immune response), GO:0009607 (response to biotic stimulus), GO:0006950 (response to stress), GO:0006952 (defense response), GO:0045087 (innate immune response), GO:0098542 (defense response to other organism), GO:0043207 (response to external biotic stimulus)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005576 (extracellular region), GO:0005615 (extracellular space)
Protein: StAR-related lipid transfer protein 4 (START domain-containing protein 4) (StARD4) (Q99JV5)
Organism: Mus musculus (Mouse)
Function: Involved in the intracellular transport of cholesterol. Binds cholesterol or other sterols.
Sequence: MADPESPWSQIGRKIKLEGLSDVASISTKLQNTLIQYHSIKEDEWRVAKKVKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGLRKA
InterPro domains: - IPR023393: START-like domain superfamily (homologous_superfamily) [24-224]
- IPR002913: START domain (domain) [25-224]
- IPR042555: StAR-related lipid transfer protein 4 (family) [17-222]
Interaction partners: - Phosphatidylcholine transfer protein
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0036094 (small molecule binding), GO:0097159 (organic cyclic compound binding), GO:0008289 (lipid binding), GO:0043178 (alcohol binding), GO:0005496 (steroid binding), GO:0032934 (sterol binding), GO:0015485 (cholesterol binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0050789 (regulation of biological process), GO:0048519 (negative regulation of biological process), GO:0051241 (negative regulation of multicellular organismal process), GO:0044238 (primary metabolic process), GO:0051239 (regulation of multicellular organismal process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044281 (small molecule metabolic process), GO:0019222 (regulation of metabolic process), GO:0044255 (cellular lipid metabolic process), GO:0040008 (regulation of growth), GO:0009892 (negative regulation of metabolic process), GO:1901615 (organic hydroxy compound metabolic process), GO:0006066 (alcohol metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0120161 (regulation of cold-induced thermogenesis), GO:0006629 (lipid metabolic process), GO:0120163 (negative regulation of cold-induced thermogenesis), GO:0016125 (sterol metabolic process), GO:1902652 (secondary alcohol metabolic process), GO:0008202 (steroid metabolic process), GO:0008203 (cholesterol metabolic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0031410 (cytoplasmic vesicle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0031982 (vesicle), GO:0043231 (intracellular membrane-bounded organelle), GO:0097708 (intracellular vesicle)
Protein: Probable trehalose-phosphate phosphatase H (AtTPPH) (EC 3.1.3.12) (Trehalose 6-phosphate phosphatase) (Q8GWG2)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Removes the phosphate from trehalose 6-phosphate to produce free trehalose. Trehalose accumulation in plant may improve abiotic stress tolerance (By similarity).
Sequence: MVRFIEENTKLVEKETGNKSNNDVTTTKKKALQDIIINNGVGLINSWVDSMRACSPTHLKSLLKQSSWLTEHPSALDMFEEILHLSEGKQIVMFLDYDGTLSPIVDDPDRAFMSRKMRRTVRKLANCFPTAIVSGRCIEKVYNFVKLTELYYAGSHGMDIKGPEQGSKYEQILQDSKSLLCQPATEFLPMIDEVYHKLVEKTKSTPGAQVENNKFCVSVHFRRVDENNWSDLANQVRSVMKDYPKLRLTQGRKVLEVRPIIKWDKGKALEFLLESLGYANCTDVFPLYIGDDRTDEDAFKVLRERRQGLGILVSKFPKETSASYSLQEPDEVMEFLQRLVEWKQLRSGA
InterPro domains: - IPR006379: HAD-superfamily hydrolase, subfamily IIB (family) [93-304]
- IPR044651: Trehalose 6-phosphate OTSB-like (family) [22-347]
- IPR036412: HAD-like superfamily (homologous_superfamily) [92-342]
- IPR003337: Trehalose-phosphatase (family) [89-340]
- IPR023214: HAD superfamily (homologous_superfamily) [91-348]
Interaction partners: - Trehalase
- Alpha,alpha-trehalose-phosphate synthase 1
- Probable alpha,alpha-trehalose-phosphate synthase 10
- Probable alpha,alpha-trehalose-phosphate synthase 2
- Probable alpha,alpha-trehalose-phosphate synthase 9
- Probable alpha,alpha-trehalose-phosphate synthase 11
- Probable alpha,alpha-trehalose-phosphate synthase 4
- Alpha,alpha-trehalose-phosphate synthase 5
- Probable alpha,alpha-trehalose-phosphate synthase 7
- Probable alpha,alpha-trehalose-phosphate synthase 3
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0042578 (phosphoric ester hydrolase activity), GO:0016791 (phosphatase activity), GO:0019203 (carbohydrate phosphatase activity), GO:0004805 (trehalose-phosphatase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0009058 (biosynthetic process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0044249 (cellular biosynthetic process), GO:0005975 (carbohydrate metabolic process), GO:1901576 (organic substance biosynthetic process), GO:0044262 (cellular carbohydrate metabolic process), GO:0009311 (oligosaccharide metabolic process), GO:0005984 (disaccharide metabolic process), GO:0016051 (carbohydrate biosynthetic process), GO:0034637 (cellular carbohydrate biosynthetic process), GO:0005991 (trehalose metabolic process), GO:0009312 (oligosaccharide biosynthetic process), GO:0046351 (disaccharide biosynthetic process), GO:0005992 (trehalose biosynthetic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0009536 (plastid), GO:0009507 (chloroplast), GO:0043231 (intracellular membrane-bounded organelle)
Protein: Acyl-CoA-binding protein homolog 3 (ACBP-3) (Q20507)
Organism: Caenorhabditis elegans
Function: Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.
Sequence: MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTDRPGIFSIIERKKWDSWKELEGVSQDEAKERYIKALNDMFDKIAEELDVAAWLEQIDPVIKTNLALIGK
InterPro domains: - IPR022408: Acyl-CoA-binding protein, ACBP, conserved site (conserved_site) [25-43]
- IPR000582: Acyl-CoA-binding protein, ACBP (domain) [3-92]
- IPR014352: FERM/acyl-CoA-binding protein superfamily (homologous_superfamily) [2-106]
- IPR035984: Acyl-CoA binding protein superfamily (homologous_superfamily) [2-90]
Interaction partners: - ACB domain-containing protein
- Fungal lipase-like domain-containing protein
- Acyl-coenzyme A oxidase acox-3
- Acyl-coenzyme A oxidase acox-1.3
- Uncharacterized protein EEED8.3
- ACB domain-containing protein
- Enoyl-CoA Hydratase
- Acyl-coenzyme A oxidase acox-1.2
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0036094 (small molecule binding), GO:1901363 (heterocyclic compound binding), GO:0008289 (lipid binding), GO:1901681 (sulfur compound binding), GO:0097159 (organic cyclic compound binding), GO:0043167 (ion binding), GO:0033218 (amide binding), GO:0097367 (carbohydrate derivative binding), GO:1901265 (nucleoside phosphate binding), GO:1901567 (fatty acid derivative binding), GO:0120227 (acyl-CoA binding), GO:0043168 (anion binding), GO:0000166 (nucleotide binding), GO:0032553 (ribonucleotide binding), GO:0000062 (fatty-acyl-CoA binding), GO:0032555 (purine ribonucleotide binding), GO:0017076 (purine nucleotide binding), GO:0032559 (adenyl ribonucleotide binding), GO:0030554 (adenyl nucleotide binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0000003 (reproduction), GO:0032501 (multicellular organismal process), GO:0051234 (establishment of localization), GO:0051641 (cellular localization), GO:0071840 (cellular component organization or biogenesis), GO:0032504 (multicellular organism reproduction), GO:0051649 (establishment of localization in cell), GO:0016043 (cellular component organization), GO:0046907 (intracellular transport), GO:0051668 (localization within membrane), GO:0006810 (transport), GO:0016192 (vesicle-mediated transport), GO:0016197 (endosomal transport), GO:0006996 (organelle organization), GO:0098876 (vesicle-mediated transport to the plasma membrane), GO:0010256 (endomembrane system organization), GO:0032456 (endocytic recycling), GO:0016050 (vesicle organization), GO:0007032 (endosome organization)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)