wanglab/bioreason-pro-rl-reasoning-data huggingface dataset:
Protein: UPF0339 protein YegP (P76402)
Organism: Escherichia coli (strain K12)
Sequence: MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
InterPro domains: - IPR051141: UPF0339 domain-containing protein (family) [1-110]
- IPR010879: Domain of unknown function DUF1508 (domain) [11-108]
- IPR036913: YegP-like superfamily (homologous_superfamily) [1-108]
Interaction partners: - Potassium binding protein Kbp
- Potassium binding protein Kbp
- Uncharacterized protein YcgB
- Acidic protein MsyB
- Probable hydrolase YcaC
- Trehalose-6-phosphate synthase
- Phosphate starvation-inducible protein PsiF
- Uncharacterized protein YdiZ
- Mannosyl-3-phosphoglycerate phosphatase
- Inner membrane protein YohC
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0005515 (protein binding), GO:0003676 (nucleic acid binding), GO:0042802 (identical protein binding), GO:0003677 (DNA binding), GO:0003723 (RNA binding), GO:0003697 (single-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0009058 (biosynthetic process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0044249 (cellular biosynthetic process), GO:0006725 (cellular aromatic compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901576 (organic substance biosynthetic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0009059 (macromolecule biosynthetic process), GO:1901362 (organic cyclic compound biosynthetic process), GO:0044271 (cellular nitrogen compound biosynthetic process), GO:0090304 (nucleic acid metabolic process), GO:0019438 (aromatic compound biosynthetic process), GO:0010467 (gene expression), GO:0018130 (heterocycle biosynthetic process), GO:0034654 (nucleobase-containing compound biosynthetic process), GO:0016070 (RNA metabolic process), GO:0032774 (RNA biosynthetic process), GO:0097659 (nucleic acid-templated transcription), GO:0006351 (DNA-templated transcription)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure), GO:0005737 (cytoplasm), GO:0005667 (transcription regulator complex)
Protein: Uncharacterized lipoprotein YgeR (Q46798)
Organism: Escherichia coli (strain K12)
Subcellular location: Cell inner membrane; Lipid-anchor. Note=Slightly enriched at the septal ring
Sequence: MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
InterPro domains: - IPR050570: Bacterial cell wall metabolism enzyme (family) [18-243]
- IPR011055: Duplicated hybrid motif (homologous_superfamily) [41-243]
- IPR016047: M23ase, beta-sheet core domain (domain) [145-238]
- IPR018392: LysM domain (domain) [40-85]
- IPR053529: Peptidase M23B (family) [9-251]
- IPR036779: LysM domain superfamily (homologous_superfamily) [40-80]
Interaction partners: - N-acetylmuramoyl-L-alanine amidase AmiB
- N-acetylmuramoyl-L-alanine amidase AmiC
- N-acetylmuramoyl-L-alanine amidase AmiC
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity), GO:0140096 (catalytic activity, acting on a protein), GO:0008233 (peptidase activity), GO:0004175 (endopeptidase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0065007 (biological regulation), GO:0065009 (regulation of molecular function), GO:0042221 (response to chemical), GO:0050790 (regulation of catalytic activity), GO:0009410 (response to xenobiotic stimulus), GO:0044093 (positive regulation of molecular function), GO:0043085 (positive regulation of catalytic activity), GO:0051336 (regulation of hydrolase activity), GO:0051345 (positive regulation of hydrolase activity)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0031975 (envelope), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0030312 (external encapsulating structure), GO:0009279 (cell outer membrane), GO:0019867 (outer membrane), GO:0030313 (cell envelope)
Protein: Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ (P45769)
Organism: Escherichia coli (strain K12)
Function: Probably part of a binding-protein-dependent transport system YdhWXYZ for an amino acid. Probably responsible for energy coupling to the transport system
Subcellular location: Cell inner membrane; Peripheral membrane protein
Sequence: MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKSERTRAFLSQVIH
InterPro domains: - IPR030679: ABC-type amino acid transport system, ATPase component, HisP-type (family) [11-251]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [10-252]
- IPR003593: AAA+ ATPase domain (domain) [37-224]
- IPR050086: Methionine import ATP-binding protein MetN-like (family) [9-251]
- IPR017871: ABC transporter-like, conserved site (conserved_site) [148-162]
- IPR003439: ABC transporter-like, ATP-binding domain (domain) [13-247]
Interaction partners: - Inner membrane amino-acid ABC transporter permease protein YhdY
- Putative amino-acid ABC transporter permease protein YhdX
- L-cystine transport system permease protein TcyL
- L-cystine transport system permease protein TcyL
- L-cystine transport system permease protein TcyL
- Glutamine transport system permease protein GlnP
- Glutamine transport system permease protein GlnP
- Glutamine transport system permease protein GlnP
- Glutamine transport system permease protein GlnP
- Glutamate/aspartate import permease protein GltK
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:1901682 (sulfur compound transmembrane transporter activity), GO:0008514 (organic anion transmembrane transporter activity), GO:0005342 (organic acid transmembrane transporter activity), GO:0072349 (modified amino acid transmembrane transporter activity), GO:0046943 (carboxylic acid transmembrane transporter activity), GO:0000099 (sulfur amino acid transmembrane transporter activity), GO:0015171 (amino acid transmembrane transporter activity), GO:0015179 (L-amino acid transmembrane transporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0071705 (nitrogen compound transport), GO:0072348 (sulfur compound transport), GO:0000101 (sulfur amino acid transport), GO:0072337 (modified amino acid transport), GO:0006865 (amino acid transport), GO:0015849 (organic acid transport), GO:0015711 (organic anion transport), GO:0015807 (L-amino acid transport), GO:0015804 (neutral amino acid transport), GO:0046942 (carboxylic acid transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Protein YhjJ (P37648)
Organism: Escherichia coli (strain K12)
Subcellular location: Periplasm
Sequence: MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQWQVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQQGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHALQSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAMTLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRAQCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARADTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILLQPKGEPEFNMKALQAVWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ
InterPro domains: - IPR007863: Peptidase M16, C-terminal (domain) [200-377]
- IPR050626: Peptidase M16 (family) [37-378]
- IPR011765: Peptidase M16, N-terminal (domain) [46-158]
- IPR011249: Metalloenzyme, LuxS/M16 peptidase-like (homologous_superfamily) [29-452]
Interaction partners: - NADH-quinone oxidoreductase subunit C/D
- NADH-quinone oxidoreductase subunit F
- NADH-quinone oxidoreductase subunit G
- Kdo(2)-lipid A phosphoethanolamine 7''-transferase
- NADH-quinone oxidoreductase subunit E
- NADH-quinone oxidoreductase subunit E
- NADH-quinone oxidoreductase subunit E
- Chaperone protein YcdY
- TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase
- dTDP-fucosamine acetyltransferase
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity), GO:0043167 (ion binding), GO:0140096 (catalytic activity, acting on a protein), GO:0008233 (peptidase activity), GO:0043169 (cation binding), GO:0008237 (metallopeptidase activity), GO:0004175 (endopeptidase activity), GO:0046872 (metal ion binding), GO:0004222 (metalloendopeptidase activity), GO:0046914 (transition metal ion binding), GO:0008270 (zinc ion binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0009056 (catabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0043603 (amide metabolic process), GO:1901564 (organonitrogen compound metabolic process), GO:1901575 (organic substance catabolic process), GO:1901135 (carbohydrate derivative metabolic process), GO:0044248 (cellular catabolic process), GO:0006518 (peptide metabolic process), GO:1901565 (organonitrogen compound catabolic process), GO:0043171 (peptide catabolic process), GO:1901136 (carbohydrate derivative catabolic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0031975 (envelope), GO:0042597 (periplasmic space), GO:0030313 (cell envelope), GO:0030288 (outer membrane-bounded periplasmic space)
Protein: Probable metabolite transport protein C1271.09 (O94342)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Subcellular location: Membrane; Multi-pass membrane protein
Sequence: MSGGWDESKYVDNGEDEVVRQVSEPSVEEPIEASVTRYRSDEEKLDDKSSGAHVTEKEAEFDIEGGSRETSQWKHFLNVAVAGVALMSDGYCSNSIGTVITILRKLYPEETTHNKSLQDIGMIAYVGTIVGQLSFGWYSDRFGRKNGMITATIILIVSTALCTGAYGYKGSINGMLSALIAYRFFLGIGIGAEYPCGSVAASESSNELKSGLRHAAFIVVTDGAIDFGFVVGALVPYILVCIFGEHHLRIVWRLSIGLGLVIPCVLLPFRIAMKDPKTYVKHKVPLTKIPWLLVLKMYGFRLFILCLIWFVYDLSAFAFGLYSSTIVDGVLPADASTARSFGWNVLINTFYLPGALLGGVFSDLLGPKYCLITGLVLQSIFGFFMSGFYNQLVHKIAGFCVIYGIFLTLGEFGPGGNIGLLASKTSPTAIRGVYYGIAAAIGKCGAIAGVYAFGGDQVRNYFYAASAMAIFVAVLALLFVPKLKQTCIEDEDKRFIQACIDAGYGNPYNYEKNEPEQLEEPDRPPAFNPFLSATFSFHHIILC
InterPro domains: - IPR005828: Major facilitator, sugar transporter-like (family) [80-279]
- IPR036259: MFS transporter superfamily (homologous_superfamily) [66-501]
- IPR020846: Major facilitator superfamily domain (domain) [78-484]
Interaction partners: - Uncharacterized transcriptional regulatory protein C27B12.11c
- Acid phosphatase
- Uncharacterized transporter C3B8.04c
- Rpb7-binding protein seb1
- UPF0400 protein C337.03
- Exosome complex exonuclease rrp6
- RNA binding exosome specificity factor Mmi1
- DNA-directed RNA polymerase II subunit rpb1
- Putative D-3-phosphoglycerate dehydrogenase
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0015605 (organophosphate ester transmembrane transporter activity), GO:0008514 (organic anion transmembrane transporter activity), GO:1901505 (carbohydrate derivative transmembrane transporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0055085 (transmembrane transport), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0015748 (organophosphate ester transport), GO:1901264 (carbohydrate derivative transport), GO:0015711 (organic anion transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0012505 (endomembrane system), GO:0043229 (intracellular organelle), GO:0005783 (endoplasmic reticulum), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: Uncharacterized protein YiaF (P0ADK0)
Organism: Escherichia coli (strain K12)
Sequence: MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
InterPro domains: - IPR021413: Protein of unknown function DUF3053 (family) [14-231]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0042802 (identical protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0051641 (cellular localization), GO:0055085 (transmembrane transport), GO:0140352 (export from cell), GO:0033036 (macromolecule localization), GO:0070727 (cellular macromolecule localization), GO:0032940 (secretion by cell), GO:0045184 (establishment of protein localization), GO:0071806 (protein transmembrane transport), GO:0006810 (transport), GO:0035592 (establishment of protein localization to extracellular region), GO:0098776 (protein transport across the cell outer membrane), GO:0071702 (organic substance transport), GO:0046903 (secretion), GO:0071705 (nitrogen compound transport), GO:0008104 (protein localization), GO:0009306 (protein secretion), GO:0015031 (protein transport), GO:0071692 (protein localization to extracellular region)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Medium/long-chain acyl-CoA thioesterase YigI (P0ADP2)
Organism: Escherichia coli (strain K12)
Function: Displays thioesterase activity against medium- to long-chain acyl-CoA substrates. Is involved in the thioesterase- dependent beta-oxidation pathway of (9Z,11E)-octadecadienoate (conjugated linoleic acid or CLA), along with TesB and FadM. In vitro, is active against decanoyl-CoA and palmitoyl-CoA (hexadecanoyl-CoA), but not with acetyl-, butyl- or benzoyl-CoA. Lacks general lipase or amidase activity. Likely plays an important and specific role under natural conditions in permitting the metabolism of unusual carbon sources
Subcellular location: Cytoplasm
Sequence: MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAFKNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTIDLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG
InterPro domains: - IPR003736: Phenylacetic acid degradation-related domain (domain) [25-153]
- IPR029069: HotDog domain superfamily (homologous_superfamily) [12-154]
- IPR006683: Thioesterase domain (domain) [58-143]
Interaction partners: - Protein RarD
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity), GO:0005515 (protein binding), GO:0042802 (identical protein binding), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0016790 (thiolester hydrolase activity), GO:0016289 (CoA hydrolase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0009058 (biosynthetic process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044281 (small molecule metabolic process), GO:0044238 (primary metabolic process), GO:0044255 (cellular lipid metabolic process), GO:0044249 (cellular biosynthetic process), GO:1901576 (organic substance biosynthetic process), GO:0006629 (lipid metabolic process), GO:0044283 (small molecule biosynthetic process), GO:0006082 (organic acid metabolic process), GO:0006631 (fatty acid metabolic process), GO:0043436 (oxoacid metabolic process), GO:0016053 (organic acid biosynthetic process), GO:0008610 (lipid biosynthetic process), GO:0006633 (fatty acid biosynthetic process), GO:0019752 (carboxylic acid metabolic process), GO:0046394 (carboxylic acid biosynthetic process), GO:0072330 (monocarboxylic acid biosynthetic process), GO:0032787 (monocarboxylic acid metabolic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure)
Protein: Putative inactive recombination-promoting nuclease-like protein YjiP (P0DP21)
Organism: Escherichia coli (strain K12)
Function: This pseudogene is the N-terminal fragment of low activity DNA endonuclease RpnD which probably yields 3'-hydroxyl ends (By similarity). The intact protein can be seen in this entry (AC B7NGZ6). Expression of the repaired protein increases the frequency of recA- independent recombination, but also decreases viability probably via DNA damage; in a RecA strain expression has no effect on viability but does induce the SOS repair response. May play a role in horizontal gene transfer
Sequence: MTNFTTSTPHDALFKTFLTHPDTARDFMEIHLPKDLRELCDLDSLKLESASFVDEKLRALHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAVM
InterPro domains: - IPR051699: Rpn/YhgA-like nuclease (family) [2-103]
- IPR010106: Recombination-promoting nuclease RpnA (family) [9-102]
- IPR006842: Transposase (putative), YhgA-like (domain) [8-103]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0044260 (cellular macromolecule metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0006259 (DNA metabolic process), GO:0090304 (nucleic acid metabolic process), GO:0006310 (DNA recombination)
Cellular Component (CC): GO:0005575 (cellular component), GO:0032991 (protein-containing complex), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0032993 (protein-DNA complex), GO:0016020 (membrane), GO:0005829 (cytosol), GO:0005657 (replication fork), GO:0009295 (nucleoid), GO:0030894 (replisome), GO:0043229 (intracellular organelle), GO:0043590 (bacterial nucleoid), GO:0043228 (non-membrane-bounded organelle), GO:0043232 (intracellular non-membrane-bounded organelle), GO:0005694 (chromosome)
Protein: Uncharacterized protein C20H4.06c (Q9HE07)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Subcellular location: Cytoplasm. Nucleus
Sequence: MYANSRKRSNVDVHRHPYVVYGSPFDLEPSRINQGVPVWKQEARDERNRKRFHGAFTGGFSAGYFNTVGSKEGWQPKSWKSSRNENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNLGWNGHDFVISPFQGYYDDTKLTNQAYHGIGYQADDVFQLERKPVGMAKNLRGGFGSGVLNDDGIEDQDIYDLGAPKMRYDKSINITKKVASPFTPVKHTFLSKKDRSKGKSIIKSQNCSDGLPPLPGFVVVFNLQSPFQNNWFPPPTIPEGWEPKLFTNSQGFSQKKAQTSNERLPLFAEKSETNSNGEASLPSDVNHGVKEDEGSWQLIDIETAKNAMSRKDNPYNDERAGIYEIFLKAHLMNMPRLLRDIDSRHLLEFTQTASLYRPMSKNLSMRFVSSFEASTKKESINSHSETDDSILRRPRTVVTFIPERLLCKRFNVALPYGQEKQKRKNISSIENVPIIAEIENKSIDSIDTRKLNRPQDIEEKPKAPQTLFSAIFGDD
InterPro domains: - IPR011666: G patch domain-containing protein, N-terminal (domain) [36-110]
Interaction partners: - Uncharacterized WD repeat-containing protein C713.05
- Pre-mRNA-splicing factor cwf18
- Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09
- Protein NRDE2 homolog
- U4/U6.U5 tri-snRNP-associated protein 3-like protein C162.01c
- Pre-mRNA-splicing factor cwf19
- Uncharacterized protein C17A2.08c
- Uncharacterized helicase C17H9.02
- Pre-mRNA-splicing factor cwf14
- Uncharacterized protein C18G6.13
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0090304 (nucleic acid metabolic process), GO:0010467 (gene expression), GO:0016070 (RNA metabolic process), GO:0006396 (RNA processing), GO:0008380 (RNA splicing), GO:0006397 (mRNA processing), GO:0016071 (mRNA metabolic process), GO:0000398 (mRNA splicing, via spliceosome), GO:0000375 (RNA splicing, via transesterification reactions), GO:0045292 (mRNA cis splicing, via spliceosome), GO:0000377 (RNA splicing, via transesterification reactions with bulged adenosine as nucleophile)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Uncharacterized protein YmdF (P56614)
Organism: Escherichia coli (strain K12)
Sequence: MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN
InterPro domains: - IPR019626: Stress-induced protein, KGG, repeat (repeat) [10-52]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0048870 (cell motility), GO:0001539 (cilium or flagellum-dependent cell motility), GO:0097588 (archaeal or bacterial-type flagellum-dependent cell motility), GO:0071973 (bacterial-type flagellum-dependent cell motility), GO:0071978 (bacterial-type flagellum-dependent swarming motility)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure)