wanglab/bioreason-pro-rl-reasoning-data huggingface dataset:
Protein: Zinc finger-like gene 1g (B8A500)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Function: Not known
Sequence: MAESARNYANGATLRTTSEKHGTEPPCVTIDQMLENLNAYLDKRLGLRKCCDDVSKKYSIKHSQSGLWALPDIKRAYGKTQRLCTTTKKDGLSVILVKQILQHEHMCETDKLERENKAEKAKVRALAEQLQNLKKDKERLENENNKLLTLISKQLESRSSSSFVDSEADLSINTCVHDHVNSKIRLAPVIVKHRRTNIEIDNEEGYEDNGERRTRTVTKVVKKYVPYRTYHPATPEQVDKWSKELPDVYKQPRKVWQFLQRLQKIYILHPLDGVMILNVTLRDSDQKRLTESVERRIGESQENIEDGWEAIKNFLFELKPAEVNWARITSCMQKTGESVAEFEERFRQIWTEHSGLNTSEDLDKDTGIPLKTAFVNGLNPEISKDLKIRYDDWDSTVTTFIQIVEWSAKLERAQDVRLRSLQSESLFYKNRTIEDEQKECVYMGYSKLRTKGRCRNCNEEGHWARECKLSLKHQSKDDDHLFKQFQQLTIQQKQTLLNAVQPQGN
InterPro domains: - IPR001878: Zinc finger, CCHC-type (domain) [453-469]
- IPR036875: Zinc finger, CCHC-type superfamily (homologous_superfamily) [439-474]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0030902 (hindbrain development), GO:0060322 (head development), GO:0048731 (system development), GO:0048513 (animal organ development), GO:0007420 (brain development), GO:0007417 (central nervous system development), GO:0007399 (nervous system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: ORF169b (Q8VSD5)
Organism: Shigella flexneri
Function: Not known
Sequence: MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQIDSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC
InterPro domains: - IPR049308: OspI-like superfamily (homologous_superfamily) [21-212]
- IPR049307: OspI-like (family) [23-193]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0140096 (catalytic activity, acting on a protein), GO:0016787 (hydrolase activity), GO:0008233 (peptidase activity), GO:0008234 (cysteine-type peptidase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0035821 (modulation of process of another organism), GO:0044068 (modulation by symbiont of host cellular process), GO:0044403 (biological process involved in symbiotic interaction), GO:0051701 (biological process involved in interaction with host), GO:0044003 (modulation by symbiont of host process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0018995 (host cellular component), GO:0043657 (host cell), GO:0033643 (host cell part), GO:0033646 (host intracellular part), GO:0043656 (host intracellular region), GO:0033647 (host intracellular organelle), GO:0033648 (host intracellular membrane-bounded organelle), GO:0042025 (host cell nucleus)
Protein: Acyl-CoA thioester hydrolase YciA (EC 3.1.2.-) (Protein P14) (P0A8Z0)
Organism: Escherichia coli (strain K12)
Function: Catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA.
Sequence: MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASEPIGQRYKATEALFKYVAVDPEGKPRALPVE
InterPro domains: - IPR029069: HotDog domain superfamily (homologous_superfamily) [7-130]
- IPR040170: Cytosolic acyl coenzyme A thioester hydrolase (family) [5-130]
- IPR033120: Hotdog acyl-CoA thioesterase (ACOT)-type domain (domain) [8-123]
- IPR006683: Thioesterase domain (domain) [26-98]
Interaction partners: - UPF0259 membrane protein YciC
- Acyl-CoA thioesterase 2
- Long-chain acyl-CoA thioesterase FadM
- 1,4-dihydroxy-2-naphthoyl-CoA hydrolase
- Acyl-CoA thioester hydrolase YbgC
- Inner membrane-spanning protein YciB
- Thioesterase 1/protease 1/lysophospholipase L1
- Acyl-coenzyme A thioesterase PaaI
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0016787 (hydrolase activity), GO:0005515 (protein binding), GO:0042802 (identical protein binding), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0016790 (thiolester hydrolase activity), GO:0016289 (CoA hydrolase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0009056 (catabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:1901575 (organic substance catabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0044260 (cellular macromolecule metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0044248 (cellular catabolic process), GO:0046700 (heterocycle catabolic process), GO:0034655 (nucleobase-containing compound catabolic process), GO:0009057 (macromolecule catabolic process), GO:0044270 (cellular nitrogen compound catabolic process), GO:0090304 (nucleic acid metabolic process), GO:0044265 (cellular macromolecule catabolic process), GO:0019439 (aromatic compound catabolic process), GO:1901361 (organic cyclic compound catabolic process), GO:0016070 (RNA metabolic process), GO:0006401 (RNA catabolic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:0005829 (cytosol), GO:1902494 (catalytic complex), GO:0005622 (intracellular anatomical structure), GO:0005737 (cytoplasm), GO:1990234 (transferase complex)
Protein: Large ribosomal subunit protein uL6c (50S ribosomal protein L6, chloroplastic) (Protein EMBRYO DEFECTIVE 2394) (O23049)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.
Subcellular location: Plastid, chloroplast {ECO:0000250}.
Sequence: MASSLVSSFQPRSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK
InterPro domains: - IPR019906: Large ribosomal subunit protein uL6, bacterial-type (family) [43-219]
- IPR002358: Large ribosomal subunit protein uL6, conserved site (conserved_site) [197-205]
- IPR020040: Large ribosomal subunit protein uL6, alpha-beta domain (domain) [53-207]
- IPR036789: Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily (homologous_superfamily) [42-223]
- IPR000702: Large ribosomal subunit protein uL6-like (family) [44-218]
Interaction partners: - Large ribosomal subunit protein uL3c
- Large ribosomal subunit protein bL27c
- Large ribosomal subunit protein bL28c
- Large ribosomal subunit protein uL2cz/uL2cy
- Large ribosomal subunit protein uL24c
- Large ribosomal subunit protein uL5c
- Large ribosomal subunit protein uL4c
- Large ribosomal subunit protein uL16c
- Small ribosomal subunit protein uS9c
- Small ribosomal subunit protein uS14m
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0006950 (response to stress), GO:0009628 (response to abiotic stimulus), GO:0009266 (response to temperature stimulus), GO:0009409 (response to cold)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0009532 (plastid stroma), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0031975 (envelope), GO:0005737 (cytoplasm), GO:0031967 (organelle envelope), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0009536 (plastid), GO:0009570 (chloroplast stroma), GO:0009526 (plastid envelope), GO:0009507 (chloroplast), GO:0043231 (intracellular membrane-bounded organelle), GO:0009941 (chloroplast envelope)
Protein: Envelope glycoprotein N (F5HFQ0)
Organism: Human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus)
Function: Envelope glycoprotein necessary for proper maturation of gM and modulation of its membrane fusion activity. Also plays a critical role in virion morphogenesis.
Subcellular location: Virion membrane {ECO:0000255|HAMAP-Rule:MF_04037, ECO:0000269|PubMed:12771417}; Single-pass type I membrane protein {ECO:0000255|HAMAP-Rule:MF_04037, ECO:0000269|PubMed:12771417}. Host membrane {ECO:0000255|HAMAP-Rule:MF_04037}; Single-pass type I membrane protein {ECO:0000255|HAMAP-Rule:MF_04037, ECO:0000269|PubMed:12771417}. Host Golgi apparatus, host trans-Golgi network {ECO:0000255|HAMAP-Rule:MF_04037}. Note=When coexpressed with gM, localizes in the host trans-Golgi network. {ECO:0000255|HAMAP-Rule:MF_04037}.
Sequence: MTASTVALALFVASILGHCWVTANSTGVASSTERSSPSTAGLSARPSPGPTSVTTPGFYDVACSADSFSPSLSSFSSVWALINALLVVVATFFYLVYLCFFKFVDEVVHA
InterPro domains: - IPR005211: Herpesvirus envelope glycoprotein N domain (domain) [29-109]
- IPR034707: Envelope glycoprotein N (family) [2-109]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0016032 (viral process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0035821 (modulation of process of another organism), GO:0044068 (modulation by symbiont of host cellular process), GO:0019048 (modulation by virus of host process), GO:0044403 (biological process involved in symbiotic interaction), GO:0035821 (modulation of process of another organism), GO:0051701 (biological process involved in interaction with host), GO:0019054 (modulation by virus of host cellular process), GO:0044003 (modulation by symbiont of host process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0044423 (virion component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Poly A polymerase head domain-containing protein (Q54BQ2)
Organism: Dictyostelium discoideum (Social amoeba)
Function: Not known
Sequence: MYTRPISKIEKSQDGYDRLYFHKQTNNEKEKLSPMQTSTPTSLKKDQPHENIKVSIYYSNERESESVDIRLTECEIQLFKELMHVIRDSGCGTTLRVAGGWVRDKLRGDDSNDIDITLDNMMGEAFAELVNKHLSSKHHQTHRIGVIQSNPEQSKHLETATVKVFDMWIDFVNLRSESYTDTSRIPVISIGTPLQDALRRDLTINSLFFNINENRIEDFTGQGINDLRDGIIRTPLPSLTTFLDDPLRVFRSIRFASRLNFKIDEELFKAGSDPVVKDAIKSKISHERIAKEFDGMLSAEEPYLSIELINKFGLFDCLFSLPTVGLDETYIEQLKNSNKDSEKYCEIADSWIGMGKQYEEIDTKRQLILSALMIPFYGIKFKNANKKNKEMSIIHYMFIEYIKFSNKDYDDVSLILECSEQLMEHIIKFVSAGIFNRKEIGLIIHKSAQLWIVVIIISFIKIQYRPNKLQTLFSRYDKPENEKYTIFHKFVGEIKEHDLIGIWNIKRLLNGKQVQDLLNRKPGTWLAPVIQLILEWQLENPSKTEQDCKDWLLTLDIK
InterPro domains: - IPR032828: tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain (domain) [282-319]
- IPR043519: Nucleotidyltransferase superfamily (homologous_superfamily) [59-229]
- IPR002646: Poly A polymerase, head domain (domain) [72-233]
Interaction partners: - Strictosidine synthase family protein
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0140640 (catalytic activity, acting on a nucleic acid), GO:0016740 (transferase activity), GO:0140098 (catalytic activity, acting on RNA), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0140101 (catalytic activity, acting on a tRNA), GO:0016779 (nucleotidyltransferase activity), GO:0070567 (cytidylyltransferase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0090304 (nucleic acid metabolic process), GO:0010467 (gene expression), GO:0016070 (RNA metabolic process), GO:0006396 (RNA processing), GO:0034470 (ncRNA processing), GO:0031123 (RNA 3'-end processing), GO:0034660 (ncRNA metabolic process), GO:0042780 (tRNA 3'-end processing), GO:0006399 (tRNA metabolic process), GO:0008033 (tRNA processing)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0005739 (mitochondrion), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: UDP-glycosyltransferase 74B1 (N-hydroxythioamide S-beta-glucosyltransferase) (EC 2.4.1.195) (Thiohydroximate S-glucosyltransferase) (O48676)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Involved in the biosynthesis of glucosinolate. In in vitro assay, may use phenylacetothiohydroximate (PATH), but not phenylacetic acid (PAA), indole-3-acetic acid (IAA) or salicylic acid (SA) as substrate. Specific for the thiohydroximate functional group and does not glucosylate the carboxylate group or a hydroxyl group.
Sequence: MAETTPKVKGHVVILPYPVQGHLNPMVQFAKRLVSKNVKVTIATTTYTASSITTPSLSVEPISDGFDFIPIGIPGFSVDTYSESFKLNGSETLTLLIEKFKSTDSPIDCLIYDSFLPWGLEVARSMELSAASFFTNNLTVCSVLRKFSNGDFPLPADPNSAPFRIRGLPSLSYDELPSFVGRHWLTHPEHGRVLLNQFPNHENADWLFVNGFEGLEETQDCENGESDAMKATLIGPMIPSAYLDDRMEDDKDYGASLLKPISKECMEWLETKQAQSVAFVSFGSFGILFEKQLAEVAIALQESDLNFLWVIKEAHIAKLPEGFVESTKDRALLVSWCNQLEVLAHESIGCFLTHCGWNSTLEGLSLGVPMVGVPQWSDQMNDAKFVEEVWKVGYRAKEEAGEVIVKSEELVRCLKGVMEGESSVKIRESSKKWKDLAVKAMSEGGSSDRSINEFIESLGK
InterPro domains: - IPR002213: UDP-glucuronosyl/UDP-glucosyltransferase (family) [11-458]
- IPR035595: UDP-glycosyltransferase family, conserved site (conserved_site) [336-379]
Interaction partners: - Cytosolic sulfotransferase 16
- S-alkyl-thiohydroximate lyase SUR1
- Cytosolic sulfotransferase 18
- Cytochrome P450 83B1
- Cytosolic sulfotransferase 17
- Gamma-glutamyl peptidase 1
- Dihomomethionine N-hydroxylase
- Cytochrome P450 83A1
- Tryptophan N-monooxygenase 1
- Tryptophan N-monooxygenase 2
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0016757 (glycosyltransferase activity), GO:0016758 (hexosyltransferase activity), GO:0008194 (UDP-glycosyltransferase activity), GO:0046527 (glucosyltransferase activity), GO:0035251 (UDP-glucosyltransferase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0042440 (pigment metabolic process), GO:0009058 (biosynthetic process), GO:0071704 (organic substance metabolic process), GO:0051552 (flavone metabolic process), GO:1901615 (organic hydroxy compound metabolic process), GO:0009812 (flavonoid metabolic process), GO:1901576 (organic substance biosynthetic process), GO:0046148 (pigment biosynthetic process), GO:1901617 (organic hydroxy compound biosynthetic process), GO:0009813 (flavonoid biosynthetic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0012505 (endomembrane system), GO:0043229 (intracellular organelle), GO:0005783 (endoplasmic reticulum), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: AcrIIA6 (A0A2U7VJX7)
Organism: Streptococcus phage D1024
Function: Not known
Sequence: MKINDDIKELILEYMSRYFKFENDFYKLPGIKFTDANWQKFKNGGTDIEKMGAARVNAMLSCLFEDFELAMIGKAQTNYYIDNSLKLNMPFYAYYDMFKKQLLINWLKNNRDDVICGTGRMYTASGNYIANAYLEVALESSRLGGGEYMLQMRFKNYSRSQEPIPSGRQNRLEWIENNLENIR
InterPro domains: - IPR049858: Anti-CRISPR type II subtype A6-like (domain) [1-179]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0016032 (viral process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0009605 (response to external stimulus), GO:0035821 (modulation of process of another organism), GO:0044068 (modulation by symbiont of host cellular process), GO:0019048 (modulation by virus of host process), GO:0044403 (biological process involved in symbiotic interaction), GO:0009607 (response to biotic stimulus), GO:0051707 (response to other organism), GO:0051701 (biological process involved in interaction with host), GO:0075136 (response to host), GO:0043207 (response to external biotic stimulus), GO:0052173 (response to defenses of other organism), GO:0019054 (modulation by virus of host cellular process), GO:0044003 (modulation by symbiont of host process), GO:0052200 (response to host defenses), GO:0019049 (mitigation of host antiviral defense response), GO:0030682 (mitigation of host defenses by symbiont)
Cellular Component (CC): GO:0005575 (cellular component), GO:0044423 (virion component), GO:0019028 (viral capsid)
Protein: Frequenin-2 (Q9VWX8)
Organism: Drosophila melanogaster (Fruit fly)
Function: Not known
Subcellular location: Cytoplasm {ECO:0000269|PubMed:25074811}.
Sequence: MGKKNSKLKQDTIDRLTTDTYFTEKEIRQWHKGFLKDCPNGLLTEQGFIKIYKQFFPDGDPSKFASLVFRVFDENNDGAIEFEEFIRALSITSRGNLDEKLHWAFRLYDVDNDGYITREEMYNIVDAIYQMVGQQPQTEDENTPQKRVDKIFDQMDKNHDDRLTLEEFREGSKADPRIVQALSLGGD
InterPro domains: - IPR011992: EF-hand domain pair (homologous_superfamily) [1-182]
- IPR018247: EF-Hand 1, calcium-binding site (binding_site) [73-168]
- IPR002048: EF-hand domain (domain) [60-178]
- IPR028846: Recoverin family (family) [7-180]
Interaction partners: - Phosphatidylinositol 4-kinase beta
- Protein cycle
- Chaperone Ric-8
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0098772 (molecular function regulator activity), GO:0005488 (binding), GO:0030234 (enzyme regulator activity), GO:0140677 (molecular function activator activity), GO:0043167 (ion binding), GO:0043169 (cation binding), GO:0010851 (cyclase regulator activity), GO:0008047 (enzyme activator activity), GO:0030249 (guanylate cyclase regulator activity), GO:0046872 (metal ion binding), GO:0010853 (cyclase activator activity), GO:0030250 (guanylate cyclase activator activity), GO:0005509 (calcium ion binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0051179 (localization), GO:0009987 (cellular process), GO:0023052 (signaling), GO:0007267 (cell-cell signaling), GO:0065008 (regulation of biological quality), GO:0051641 (cellular localization), GO:0051234 (establishment of localization), GO:0071840 (cellular component organization or biogenesis), GO:0140352 (export from cell), GO:0007154 (cell communication), GO:0099536 (synaptic signaling), GO:0006810 (transport), GO:0051649 (establishment of localization in cell), GO:0001505 (regulation of neurotransmitter levels), GO:0016043 (cellular component organization), GO:0032940 (secretion by cell), GO:0023061 (signal release), GO:0006836 (neurotransmitter transport), GO:0099643 (signal release from synapse), GO:0099537 (trans-synaptic signaling), GO:0046903 (secretion), GO:0007269 (neurotransmitter secretion), GO:0034330 (cell junction organization), GO:0098916 (anterograde trans-synaptic signaling), GO:0050808 (synapse organization), GO:0007528 (neuromuscular junction development), GO:0007268 (chemical synaptic transmission)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0005886 (plasma membrane), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Cyclin/Brf1-like TBP-binding protein (F4IN86)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Not known
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
Sequence: MVWCKHCAKNVPKIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQVCNIVTSVGNSSSRDRRRRKAIDELRNLKDALGIGDERDDVVDMAAVFYEAAMDQNFTKGRRAELVQSSCLYLACSYLRVSVYELGSVYLQLCEMLYLVQNKNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKPSGICGAAIYMAALSHGIMYSRADIAKVVHMCEATITKRLNEFANTEAGSLTVDELDESEEILRKETFTPRPNSDKGVVNCKHKDLKRFGYGLCKSCHDDFIIISGGVVGGSDPPAYQRAEKERMEKAAREENEGGIGNLNHDEQVNVSKRAKKCSEKGEGETYGGERHAEYSDESDICSDDDDSEVEHVLLGEDETRLKTTAWNLQNKDYLEEQAEKEAALKAANCPEDARNLVEASKAAVANSRKEKRRKRAEEAKNAPPSATATEASYTETQRVNQHHVLDELLDTSPTQKKPRTETVTEKKKEEHEIVEDEEDEEDYAAPHADENFYEDEVEEEENGYDFGLY
InterPro domains: - IPR013150: Transcription factor TFIIB, cyclin-like domain (domain) [67-247]
- IPR036915: Cyclin-like superfamily (homologous_superfamily) [68-248]
- IPR013763: Cyclin-like domain (domain) [71-246]
- IPR000812: Transcription factor TFIIB (family) [2-453]
- IPR011665: Brf1, TBP-binding domain (domain) [381-470]
Interaction partners: - Homeodomain-like superfamily protein
- Tetratricopeptide repeat
- DNA-directed RNA polymerase III subunit RPC6
- DNA-directed RNA polymerase III subunit 2
- DNA-directed RNA polymerase III subunit 1
- Plant-specific TFIIB-related protein 2
- Transcription initiation factor IIB-2
- Plant-specific TFIIB-related protein 1
- TATA-box-binding protein 1
- TATA-box-binding protein 2
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:1901363 (heterocyclic compound binding), GO:0097159 (organic cyclic compound binding), GO:0005515 (protein binding), GO:0003676 (nucleic acid binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003677 (DNA binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding), GO:0000987 (cis-regulatory region sequence-specific DNA binding), GO:0001016 (RNA polymerase III transcription regulatory region sequence-specific DNA binding), GO:0001046 (core promoter sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0055046 (microgametogenesis), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0048229 (gametophyte development), GO:0009555 (pollen development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)