wanglab/bioreason-pro-rl-reasoning-data huggingface dataset:
Protein: Uncharacterized protein YmfM (P75977)
Organism: Escherichia coli (strain K12)
Sequence: MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
Interaction partners: - Uncharacterized protein YmfL
- Prophage transcriptional regulatory protein
- Uncharacterized protein YmfJ
- Uncharacterized protein YmfR
- Prophage excisionase-like protein
- Prophage integrase IntE
- Uncharacterized protein StfP
- Uncharacterized protein YmfQ
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0098772 (molecular function regulator activity), GO:0030234 (enzyme regulator activity), GO:0140678 (molecular function inhibitor activity), GO:0061134 (peptidase regulator activity), GO:0004857 (enzyme inhibitor activity), GO:0061135 (endopeptidase regulator activity), GO:0030414 (peptidase inhibitor activity), GO:0004866 (endopeptidase inhibitor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0009987 (cellular process), GO:0009605 (response to external stimulus), GO:0009628 (response to abiotic stimulus), GO:0042221 (response to chemical), GO:0051716 (cellular response to stimulus), GO:0006950 (response to stress), GO:0007154 (cell communication), GO:0009408 (response to heat), GO:0009266 (response to temperature stimulus), GO:0009991 (response to extracellular stimulus), GO:0010035 (response to inorganic substance), GO:0104004 (cellular response to environmental stimulus), GO:0042594 (response to starvation), GO:0006979 (response to oxidative stress), GO:0070887 (cellular response to chemical stimulus), GO:0033554 (cellular response to stress), GO:0071214 (cellular response to abiotic stimulus), GO:1901700 (response to oxygen-containing compound), GO:0031668 (cellular response to extracellular stimulus), GO:0071496 (cellular response to external stimulus), GO:0009409 (response to cold), GO:0010033 (response to organic substance), GO:0034599 (cellular response to oxidative stress), GO:0009267 (cellular response to starvation), GO:0031667 (response to nutrient levels), GO:0062197 (cellular response to chemical stress), GO:0042542 (response to hydrogen peroxide), GO:1901701 (cellular response to oxygen-containing compound), GO:0031669 (cellular response to nutrient levels), GO:0000302 (response to reactive oxygen species), GO:0071467 (cellular response to pH), GO:0071468 (cellular response to acidic pH), GO:0034614 (cellular response to reactive oxygen species), GO:0070301 (cellular response to hydrogen peroxide)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0043226 (organelle), GO:0042995 (cell projection), GO:0099080 (supramolecular complex), GO:0097740 (paraflagellar rod), GO:0043227 (membrane-bounded organelle), GO:0120025 (plasma membrane bounded cell projection), GO:0005929 (cilium), GO:0031514 (motile cilium), GO:0097729 (9+2 motile cilium), GO:0036126 (sperm flagellum)
Protein: Inner membrane protein YmgF (P58034)
Organism: Escherichia coli (strain K12)
Function: Could be involved in cell division. May participate in the stabilization of the cell divisome under specific conditions
Subcellular location: Cell inner membrane; Multi-pass membrane protein. Note=Localizes to the division septum. Localization requires FtsZ, FtsA, FTsQ and FtsN
Sequence: MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTINLLNALVWLAINLVNRLRERLVNHRDQQ
InterPro domains: - IPR048171: Cell division-associated protein YmgF (family) [1-72]
Interaction partners: - Cell division protein FtsQ
- Cell division protein FtsL
- Cell division protein FtsL
- Cell division protein FtsL
- Cell division protein FtsL
- Divisome-associated membrane protein Blr
- Cell division protein FtsN
- Peptidoglycan D,D-transpeptidase FtsI
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:1901702 (salt transmembrane transporter activity), GO:0015075 (monoatomic ion transmembrane transporter activity), GO:0015318 (inorganic molecular entity transmembrane transporter activity), GO:0022804 (active transmembrane transporter activity), GO:0015079 (potassium ion transmembrane transporter activity), GO:0022890 (inorganic cation transmembrane transporter activity), GO:0022853 (active monoatomic ion transmembrane transporter activity), GO:0008324 (monoatomic cation transmembrane transporter activity), GO:0015081 (sodium ion transmembrane transporter activity), GO:0015291 (secondary active transmembrane transporter activity), GO:0015297 (antiporter activity), GO:0015078 (proton transmembrane transporter activity), GO:0022821 (solute:potassium antiporter activity), GO:0046873 (metal ion transmembrane transporter activity), GO:0140828 (metal cation:monoatomic cation antiporter activity), GO:0015385 (sodium:proton antiporter activity), GO:0015386 (potassium:proton antiporter activity), GO:0051139 (metal cation:proton antiporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0009987 (cellular process), GO:0051716 (cellular response to stimulus), GO:0006950 (response to stress), GO:0033554 (cellular response to stress), GO:0006974 (cellular response to DNA damage stimulus)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Uncharacterized WD repeat-containing protein C713.05 (Q9C1X0)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Subcellular location: Cytoplasm. Nucleus
Sequence: MRLEAKTKLSSKAKEPINVVKYNRTGKYVLAAGNERVVRLWNVKSGACIHEYAGHGHEILDLDLVYDSTKFASCGGDKFIQVWDVNTGKVDRRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGTLRTYDIRKGTLSSDYFSHPITSVKTSKSASFSLISSLNSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLENETQITSTSVVGTPIVTDISCHPTMDDFIIATVHGDLFIYQYN
InterPro domains: - IPR020472: PAC1/LIS1-like, WD-40 repeat (repeat) [113-253]
- IPR036322: WD40-repeat-containing domain superfamily (homologous_superfamily) [13-295]
- IPR015943: WD40/YVTN repeat-like-containing domain superfamily (homologous_superfamily) [2-297]
- IPR001680: WD40 repeat (repeat) [4-297]
- IPR051980: WD repeat domain-containing protein MORG1 (family) [5-292]
- IPR019775: WD40 repeat, conserved site (conserved_site) [239-253]
Interaction partners: - Spliceosome-associated protein 49
- Uncharacterized protein C20H4.06c
- Pre-mRNA-splicing factor spp42
- Pre-mRNA-splicing factor cwf18
- Pre-mRNA-splicing factor cwf19
- Pre-mRNA-splicing factor ini1
- Pre-mRNA-processing ATP-dependent RNA helicase prp11
- Splicing factor cactin
- Protein psi1
- PWI domain-containing protein C825.05c
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0060090 (molecular adaptor activity), GO:0030674 (protein-macromolecule adaptor activity), GO:0005515 (protein binding), GO:0035591 (signaling adaptor activity), GO:0030159 (signaling receptor complex adaptor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0090304 (nucleic acid metabolic process), GO:0010467 (gene expression), GO:0016070 (RNA metabolic process), GO:0006396 (RNA processing), GO:0008380 (RNA splicing), GO:0006397 (mRNA processing), GO:0016071 (mRNA metabolic process), GO:0000398 (mRNA splicing, via spliceosome), GO:0000375 (RNA splicing, via transesterification reactions), GO:0045292 (mRNA cis splicing, via spliceosome), GO:0000377 (RNA splicing, via transesterification reactions with bulged adenosine as nucleophile)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Low conductance mechanosensitive channel YnaI (P0AEB5)
Organism: Escherichia coli (strain K12)
Function: Mechanosensitive channel that protects cells against hypoosmotic stress when highly overexpressed
Subcellular location: Cell inner membrane; Multi-pass membrane protein
Sequence: MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHAVQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFEKQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMDNITPPEQGR
InterPro domains: - IPR045042: Mechanosensitive ion channel protein YnaI-like (family) [40-334]
- IPR049278: Mechanosensitive ion channel MscS, C-terminal domain (domain) [237-324]
- IPR023408: Mechanosensitive ion channel MscS, beta-domain superfamily (homologous_superfamily) [179-229]
- IPR006686: Mechanosensitive ion channel MscS, conserved site (conserved_site) [194-228]
- IPR011066: Mechanosensitive ion channel MscS, C-terminal domain superfamily (homologous_superfamily) [231-335]
- IPR011014: Mechanosensitive ion channel MscS, transmembrane-2 (homologous_superfamily) [79-160]
- IPR006685: Mechanosensitive ion channel MscS (domain) [162-229]
- IPR049142: Mechanosensitive ion channel, transmembrane helices 2/3 (domain) [121-161]
- IPR010920: LSM domain superfamily (homologous_superfamily) [162-228]
Interaction partners: - Moderate conductance mechanosensitive channel YbiO
- Large-conductance mechanosensitive channel
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0005515 (protein binding), GO:0015075 (monoatomic ion transmembrane transporter activity), GO:0042802 (identical protein binding), GO:0022803 (passive transmembrane transporter activity), GO:0005216 (monoatomic ion channel activity), GO:0015267 (channel activity), GO:0022839 (monoatomic ion gated channel activity), GO:0022836 (gated channel activity), GO:0008381 (mechanosensitive monoatomic ion channel activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0050896 (response to stimulus), GO:0009605 (response to external stimulus), GO:0051716 (cellular response to stimulus), GO:0006950 (response to stress), GO:0007154 (cell communication), GO:0009991 (response to extracellular stimulus), GO:0031668 (cellular response to extracellular stimulus), GO:0042594 (response to starvation), GO:0071496 (cellular response to external stimulus), GO:0033554 (cellular response to stress), GO:0031669 (cellular response to nutrient levels), GO:0009267 (cellular response to starvation), GO:0031667 (response to nutrient levels)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Uncharacterized protein YncE (P76116)
Organism: Escherichia coli (strain K12)
Sequence: MHLRHLFSSRLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL
InterPro domains: - IPR011048: Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily (homologous_superfamily) [34-337]
- IPR015943: WD40/YVTN repeat-like-containing domain superfamily (homologous_superfamily) [31-353]
- IPR051200: Multi-functional host-pathogen interaction and enzymatic activity protein (family) [19-343]
- IPR048433: YNCE-like beta-propeller (domain) [71-333]
Interaction partners: - Ferrienterobactin receptor
- Enterobactin synthase component B
- Enterobactin synthase component F
- Ferric siderophore reductase
- Pyrroloquinoline quinone transporter
- Iron(III) enterobactin esterase
- Isochorismate synthase EntC
- NADPH-dependent ferric-chelate reductase
- Colicin I receptor
- Ferric enterobactin-binding periplasmic protein FepB
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0051641 (cellular localization), GO:0055085 (transmembrane transport), GO:0033036 (macromolecule localization), GO:0070727 (cellular macromolecule localization), GO:0051649 (establishment of localization in cell), GO:0046907 (intracellular transport), GO:0045184 (establishment of protein localization), GO:0071806 (protein transmembrane transport), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0065002 (intracellular protein transmembrane transport), GO:0006886 (intracellular protein transport), GO:0071705 (nitrogen compound transport), GO:0008104 (protein localization), GO:0015031 (protein transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0031975 (envelope), GO:0042597 (periplasmic space), GO:0030313 (cell envelope), GO:0030288 (outer membrane-bounded periplasmic space)
Protein: Uncharacterized GST-like protein YncG (P76117)
Organism: Escherichia coli (strain K12)
Sequence: MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGASRELLKTLNPLCQVPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQLFQRLLVWLVANVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDCYLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII
InterPro domains: - IPR036249: Thioredoxin-like superfamily (homologous_superfamily) [2-79]
- IPR010987: Glutathione S-transferase, C-terminal-like (domain) [86-205]
- IPR036282: Glutathione S-transferase, C-terminal domain superfamily (homologous_superfamily) [79-203]
- IPR004045: Glutathione S-transferase, N-terminal (domain) [1-82]
Interaction partners: - Uncharacterized protein YncH
- Uncharacterized acetyltransferase YdcK
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups), GO:0004364 (glutathione transferase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0006950 (response to stress), GO:0042221 (response to chemical), GO:0006979 (response to oxidative stress), GO:0010033 (response to organic substance), GO:1901700 (response to oxygen-containing compound), GO:0010035 (response to inorganic substance), GO:0000302 (response to reactive oxygen species), GO:0042542 (response to hydrogen peroxide)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure)
Protein: Inner membrane ABC transporter permease protein YnjC (P76224)
Organism: Escherichia coli (strain K12)
Function: Probably part of the binding-protein-dependent transport system YnjCD. Probably responsible for the translocation of the substrate across the membrane
Subcellular location: Cell inner membrane; Multi-pass membrane protein
Sequence: MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWLLQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKPATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQGLR
InterPro domains: - IPR000515: ABC transporter type 1, transmembrane domain MetI-like (domain) [54-502]
- IPR035906: MetI-like superfamily (homologous_superfamily) [5-502]
Interaction partners: - Uncharacterized ABC transporter ATP-binding protein YnjD
- Protein YnjB
- TVP38/TMEM64 family inner membrane protein YdjZ
- Uncharacterized protein YdjY
- TVP38/TMEM64 family membrane protein YdjX
- Uncharacterized protein YnjA
- Thiosulfate sulfurtransferase YnjE
- Inner membrane protein YnjF
- Uncharacterized protein YdhS
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0015203 (polyamine transmembrane transporter activity), GO:0015101 (organic cation transmembrane transporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0055085 (transmembrane transport), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0071705 (nitrogen compound transport), GO:0015695 (organic cation transport), GO:0015846 (polyamine transport), GO:0015848 (spermidine transport), GO:0015847 (putrescine transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Uncharacterized ABC transporter ATP-binding protein YnjD (P76909)
Organism: Escherichia coli (strain K12)
Function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system
Sequence: MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
InterPro domains: - IPR003593: AAA+ ATPase domain (domain) [26-214]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [1-208]
- IPR050093: ABC Transporter, Small Molecule Importer (family) [2-198]
- IPR017871: ABC transporter-like, conserved site (conserved_site) [134-148]
- IPR003439: ABC transporter-like, ATP-binding domain (domain) [2-216]
Interaction partners: - Inner membrane ABC transporter permease protein YnjC
- Protein YnjB
- Uncharacterized protein YdjY
- TVP38/TMEM64 family inner membrane protein YdjZ
- Uncharacterized protein YnjA
- TVP38/TMEM64 family membrane protein YdjX
- Thiosulfate sulfurtransferase YnjE
- Vitamin B12 import ATP-binding protein BtuD
- Inner membrane protein YnjF
- Nickel import ATP-binding protein NikD
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0140318 (protein transporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0042592 (homeostatic process), GO:0048878 (chemical homeostasis), GO:0019725 (cellular homeostasis), GO:0050801 (monoatomic ion homeostasis), GO:0055082 (intracellular chemical homeostasis), GO:0098771 (inorganic ion homeostasis), GO:0006873 (intracellular monoatomic ion homeostasis), GO:0055072 (iron ion homeostasis), GO:0055080 (monoatomic cation homeostasis), GO:0006879 (intracellular iron ion homeostasis), GO:0030003 (intracellular monoatomic cation homeostasis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Protein YobA (P0AA57)
Organism: Escherichia coli (strain K12)
Subcellular location: Periplasm
Sequence: MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK
InterPro domains: - IPR014755: Copper resistance protein CopC/internalin, immunoglobulin-like (homologous_superfamily) [27-124]
- IPR014756: Immunoglobulin E-set (homologous_superfamily) [26-124]
- IPR007348: CopC domain (domain) [27-123]
- IPR047685: Copper resistance protein CopC-like (family) [19-124]
- IPR032694: Copper transport protein C/D (family) [13-123]
Interaction partners: - Inner membrane protein YebZ
- Uncharacterized protein YebY
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0042221 (response to chemical), GO:0046677 (response to antibiotic)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0031975 (envelope), GO:0042597 (periplasmic space), GO:0030313 (cell envelope), GO:0030288 (outer membrane-bounded periplasmic space)
Protein: Inner membrane protein YohD (P33366)
Organism: Escherichia coli (strain K12)
Subcellular location: Cell inner membrane; Multi-pass membrane protein
Sequence: MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA
InterPro domains: - IPR032816: VTT domain (domain) [24-143]
- IPR051311: DedA domain-containing protein (family) [3-186]
Interaction partners: - Inner membrane protein YabI
- TVP38/TMEM64 family inner membrane protein YdjZ
- Inner membrane protein YohC
- TVP38/TMEM64 family membrane protein YdjX
- Inner membrane protein YqaA
- Inner membrane protein YqaA
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0043167 (ion binding), GO:0016740 (transferase activity), GO:0005515 (protein binding), GO:0042802 (identical protein binding), GO:0043169 (cation binding), GO:0016741 (transferase activity, transferring one-carbon groups), GO:0046872 (metal ion binding), GO:0008168 (methyltransferase activity), GO:0000287 (magnesium ion binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0055085 (transmembrane transport), GO:1903825 (organic acid transmembrane transport), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0071705 (nitrogen compound transport), GO:1905039 (carboxylic acid transmembrane transport), GO:0003333 (amino acid transmembrane transport), GO:0006865 (amino acid transport), GO:0015849 (organic acid transport), GO:0015711 (organic anion transport), GO:0015807 (L-amino acid transport), GO:1902475 (L-alpha-amino acid transmembrane transport), GO:0015803 (branched-chain amino acid transport), GO:0015804 (neutral amino acid transport), GO:0046942 (carboxylic acid transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)