wanglab/bioreason-pro-rl-reasoning-data huggingface dataset:
Protein: Tubulin polymerization-promoting protein homolog (TPPP) (Protein ringmaker) (Q9VV43)
Organism: Drosophila melanogaster (Fruit fly)
Function: Regulator of microtubule required for axonal extension during embryonic development. Promotes microtubule bundling and polymerization. Together with futsch, required for neuromuscular junction (NMJ) bouton growth by regulating synaptic microtubules.
Subcellular location: Cytoplasm, cytoskeleton {ECO:0000269|PubMed:31156389}. Cell projection, axon {ECO:0000269|PubMed:27422099}. Presynapse {ECO:0000269|PubMed:31156389}. Note=Localizes at the presynaptic neuromuscular junction (NMJ). {ECO:0000269|PubMed:31156389}.
Sequence: MSEVAAANGSPSPAPTPEVPATELAQLALEDEPKVSFSDQFKAFSKFGDSKSDGKLITLSQSDKWMKQAKVIDKKITTTDTGIHFKKFKAMKISLSDYNKFLDDLAKTKKVELSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDASGKGKGIAGRRNVVDGSGYVSGYQHKDTYDNAH
InterPro domains: - IPR011992: EF-hand domain pair (homologous_superfamily) [36-156]
- IPR008907: Tubulin polymerization-promoting protein (family) [23-190]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0050789 (regulation of biological process), GO:0032501 (multicellular organismal process), GO:0071840 (cellular component organization or biogenesis), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0007017 (microtubule-based process), GO:0050794 (regulation of cellular process), GO:0048522 (positive regulation of cellular process), GO:0032989 (cellular component morphogenesis), GO:0000902 (cell morphogenesis), GO:0016043 (cellular component organization), GO:0051130 (positive regulation of cellular component organization), GO:0000226 (microtubule cytoskeleton organization), GO:0044085 (cellular component biogenesis), GO:0051128 (regulation of cellular component organization), GO:0044089 (positive regulation of cellular component biogenesis), GO:0044087 (regulation of cellular component biogenesis), GO:0031109 (microtubule polymerization or depolymerization), GO:0043254 (regulation of protein-containing complex assembly), GO:0030030 (cell projection organization), GO:0006996 (organelle organization), GO:0097435 (supramolecular fiber organization), GO:0032990 (cell part morphogenesis), GO:0022607 (cellular component assembly), GO:0031334 (positive regulation of protein-containing complex assembly), GO:0007010 (cytoskeleton organization), GO:0030031 (cell projection assembly), GO:0120036 (plasma membrane bounded cell projection organization), GO:0044782 (cilium organization), GO:0035082 (axoneme assembly), GO:0120031 (plasma membrane bounded cell projection assembly), GO:0060271 (cilium assembly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005622 (intracellular anatomical structure)
Protein: Squalene synthase BSS (EC 2.5.1.21) (Q9SDW9)
Organism: Botryococcus braunii (Green alga)
Function: Converts farnesyl diphosphate (FPP) into squalene, a precursor for sterol biosynthesis in eukaryotes. Does not possess botryococcene synthase activity.
Subcellular location: Endoplasmic reticulum membrane {ECO:0000250}; Single-pass membrane protein {ECO:0000255}.
Sequence: MGMLRWGVESLQNPDELIPVLRMIYADKFGKIKPKDEDRGFCYEILNLVSRSFAIVIQQLPAQLRDPVCIFYLVLRALDTVEDDMKIAATTKIPLLRDFYEKISDRSFRMTAGDQKDYIRLLDQYPKVTSVFLKLTPREQEIIADITKRMGNGMADFVHKGVPDTVGDYDLYCHYVAGVVGLGLSQLFVASGLQSPSLTRSEDLSNHMGLFLQKTNIIRDYFEDINELPAPRMFWPREIWGKYANNLAEFKDPANKAAAMCCLNEMVTDALRHAVYCLQYMSMIEDPQIFNFCAIPQTMAFGTLSLCYNNYTIFTGPKAAVKLRRGTTAKLMYTSNNMFAMYRHFLNFAEKLEVRCNTETSEDPSVTTTLEHLHKIKAACKAGLARTKDDTFDELRSRLLALTGGSFYLAWTYNFLDLRGPGDLPTFLSVTQHWWSILIFLISIAVFFIPSRPSPRPTLSA
InterPro domains: - IPR002060: Squalene/phytoene synthase (family) [35-335]
- IPR033904: Trans-isoprenyl diphosphate synthases, head-to-head (domain) [40-330]
- IPR008949: Isoprenoid synthase domain superfamily (homologous_superfamily) [36-382]
- IPR044844: Trans-isoprenyl diphosphate synthases, eukaryotic-type (family) [9-389]
- IPR006449: Squalene synthase-like (family) [38-380]
- IPR019845: Squalene/phytoene synthase, conserved site (conserved_site) [172-236]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0016765 (transferase activity, transferring alkyl or aryl (other than methyl) groups), GO:0004659 (prenyltransferase activity), GO:0004311 (farnesyltranstransferase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009058 (biosynthetic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:1901615 (organic hydroxy compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:1901576 (organic substance biosynthetic process), GO:0006629 (lipid metabolic process), GO:0016125 (sterol metabolic process), GO:1901617 (organic hydroxy compound biosynthetic process), GO:1901362 (organic cyclic compound biosynthetic process), GO:0008610 (lipid biosynthetic process), GO:0008202 (steroid metabolic process), GO:0016126 (sterol biosynthetic process), GO:0006694 (steroid biosynthetic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0016020 (membrane), GO:0005737 (cytoplasm), GO:0012505 (endomembrane system), GO:0031984 (organelle subcompartment), GO:0042175 (nuclear outer membrane-endoplasmic reticulum membrane network), GO:0031090 (organelle membrane), GO:0005783 (endoplasmic reticulum), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0098827 (endoplasmic reticulum subcompartment), GO:0043231 (intracellular membrane-bounded organelle), GO:0005789 (endoplasmic reticulum membrane)
Protein: Trans-3-hydroxy-L-proline dehydratase (T3LHyp dehydratase) (t3HypD) (EC 4.2.1.77) (Trans-L-3-hydroxyproline dehydratase) (Q92WR9)
Organism: Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Function: Catalyzes the dehydration of trans-3-hydroxy-L-proline (t3LHyp) to Delta(1)-pyrroline-2-carboxylate (Pyr2C). Can also catalyze the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp), albeit with 150-fold lower efficiency. May be involved in the degradation pathway that converts t3LHyp to L-proline, which would allow R.meliloti to grow on t3LHyp as a sole carbon source. Displays no proline racemase activity.
Sequence: MRSTKTIHVISAHAEGEVGDVIVGGVAPPPGDTIWEQSRWIAREQTLRNFVLNEPRGGVFRHVNLLVPPKHPDADAAFIIMEPEDTPPMSGSNSICVSTVLLDSGILPMKEPVTEITLEAPGGLVRVRAECRDGKAERIFVENLPSFAERLDAKLEVEGLGTLTVDTAYGGDSFVIVDAAAMGFALKPDEAHDIARLGVRITNAANAKLGFHHPENPDWRHFSFCLFAGPVERTAEGLRAGAAVAIQPGKVDRSPTGTALSARMAVLHARGQMGLSDRLTAVSLIGSTFSGRILGTTEVGGRPAVLPEISGRAWITGTHQHMLDPSDPWPEGYRLTDTWGAR
InterPro domains: - IPR008794: Proline racemase family (family) [1-336]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016829 (lyase activity), GO:0016835 (carbon-oxygen lyase activity), GO:0016836 (hydro-lyase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0009056 (catabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:0006575 (cellular modified amino acid metabolic process), GO:1901564 (organonitrogen compound metabolic process), GO:1901575 (organic substance catabolic process), GO:0044248 (cellular catabolic process), GO:0006577 (amino-acid betaine metabolic process), GO:0044270 (cellular nitrogen compound catabolic process), GO:0042219 (cellular modified amino acid catabolic process), GO:1901565 (organonitrogen compound catabolic process), GO:0006579 (amino-acid betaine catabolic process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0042579 (microbody), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005777 (peroxisome)
Protein: Small nuclear RNA activating protein 3 (Q38AQ6)
Organism: Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Function: Not known
Sequence: MQQRLVLIATDFVTLYQEALSRQLLTPAALTPDAFKDLFDRINVEYMHYAGAGATQPYFEDVVENLLQLAAAYITLPPDAAPNSRAFGVYLTFFLYATQPAIETSPVKVQISLGTLQRYVEDIDSTARDNQGVITSLGCRVSDGEKRLLLALHKSGALKVMPFIDDSLYVRTLIEVHEQAGLPLLTCVAPQRSNPSPHIALEGGTCVDDDLSNQLHAYREMRRRINTESLLKRK
InterPro domains: - IPR019188: snRNA-activating protein complex subunit 1 (family) [34-118]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0009058 (biosynthetic process), GO:0044237 (cellular metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0071840 (cellular component organization or biogenesis), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:1901576 (organic substance biosynthetic process), GO:0044085 (cellular component biogenesis), GO:0006139 (nucleobase-containing compound metabolic process), GO:0046483 (heterocycle metabolic process), GO:0044249 (cellular biosynthetic process), GO:0016043 (cellular component organization), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0009059 (macromolecule biosynthetic process), GO:1901362 (organic cyclic compound biosynthetic process), GO:0090304 (nucleic acid metabolic process), GO:0034654 (nucleobase-containing compound biosynthetic process), GO:0019438 (aromatic compound biosynthetic process), GO:0018130 (heterocycle biosynthetic process), GO:0044271 (cellular nitrogen compound biosynthetic process), GO:0043933 (protein-containing complex organization), GO:0010467 (gene expression), GO:0022607 (cellular component assembly), GO:0016070 (RNA metabolic process), GO:0065003 (protein-containing complex assembly), GO:0071824 (protein-DNA complex subunit organization), GO:0032774 (RNA biosynthetic process), GO:0097659 (nucleic acid-templated transcription), GO:0006352 (DNA-templated transcription initiation), GO:0065004 (protein-DNA complex assembly), GO:0006351 (DNA-templated transcription), GO:0006367 (transcription initiation at RNA polymerase II promoter), GO:0070897 (transcription preinitiation complex assembly), GO:0006366 (transcription by RNA polymerase II), GO:0051123 (RNA polymerase II preinitiation complex assembly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0031974 (membrane-enclosed lumen), GO:0005654 (nucleoplasm), GO:0043233 (organelle lumen), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0070013 (intracellular organelle lumen), GO:0031981 (nuclear lumen), GO:0005634 (nucleus)
Protein: V4-1 protein (Q5NV68)
Organism: Homo sapiens (Human)
Function: Not known
Sequence: QPVLTQPPSSSASPGESARLTCTLPSDINVGSYNIYWYQQKPGSPPRYLLYYYSDSDKGQGSGVPSRFSGSKDASANTGILLISGLQSEDEADYYCMIWPSNAS
InterPro domains: - IPR013106: Immunoglobulin V-set domain (domain) [5-102]
- IPR036179: Immunoglobulin-like domain superfamily (homologous_superfamily) [2-101]
- IPR007110: Immunoglobulin-like domain (domain) [2-104]
- IPR013783: Immunoglobulin-like fold (homologous_superfamily) [1-104]
- IPR003599: Immunoglobulin domain subtype (domain) [7-104]
- IPR050150: Immunoglobulin Variable Light Chain (family) [1-96]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0048731 (system development), GO:0007417 (central nervous system development), GO:0007399 (nervous system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005576 (extracellular region)
Protein: Aquaporin-8 (A0A060X7C2)
Organism: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri)
Function: Not known
Subcellular location: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
Sequence: MGVEKMELDEGHSTLMSGTKKPPPVRPPNTFERIIQPCLAEVVGTMFFVFIGCVSVIENVESAGRVQPALVHGLAVAVMVACMDQISGSHFNPPFTIAIYLCGGMKLFMVVPYLISQLLGGVLGAAMSKMMTSKENYANATGAAFTILHTEDQLAGAIFGEIAMTCLVTMVVLLGAVNAKSKSPMVPFLVGCTVIINILAGGDVSGTCLNPARALGPAVMANYWTYHWVYWAGPITGGLLAAGLVRLVLGDEKTRVIMK
InterPro domains: - IPR000425: Major intrinsic protein (family) [35-248]
- IPR034294: Aquaporin transporter (family) [33-248]
- IPR023277: Aquaporin 8 (family) [24-259]
- IPR023271: Aquaporin-like (homologous_superfamily) [9-256]
Interaction partners: - Aquaporin-4
- Aquaporin-9
- Aquaporin-9
- Aquaporin
- Aquaporin-7-like
- Katanin p60 ATPase-containing subunit A1 MIT domain-containing protein
- AAA ATPase AAA+ lid domain-containing protein
- Katanin p60 ATPase-containing subunit A1
- Uncharacterized protein
- Spastin/Vps4 C-terminal domain-containing protein
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0022803 (passive transmembrane transporter activity), GO:0015318 (inorganic molecular entity transmembrane transporter activity), GO:1901702 (salt transmembrane transporter activity), GO:0015267 (channel activity), GO:0005372 (water transmembrane transporter activity), GO:0015250 (water channel activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0009628 (response to abiotic stimulus), GO:0006950 (response to stress), GO:0042221 (response to chemical), GO:0006970 (response to osmotic stress), GO:0001101 (response to acid chemical), GO:1901700 (response to oxygen-containing compound), GO:0009414 (response to water deprivation), GO:0010035 (response to inorganic substance), GO:0009415 (response to water), GO:0010033 (response to organic substance), GO:1902074 (response to salt), GO:0009651 (response to salt stress), GO:0006972 (hyperosmotic response), GO:0042538 (hyperosmotic salinity response)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0045178 (basal part of cell), GO:0005622 (intracellular anatomical structure), GO:0042995 (cell projection), GO:0016020 (membrane), GO:0048471 (perinuclear region of cytoplasm), GO:0071944 (cell periphery), GO:0005737 (cytoplasm), GO:0098862 (cluster of actin-based cell projections), GO:0009925 (basal plasma membrane), GO:0098590 (plasma membrane region), GO:0120025 (plasma membrane bounded cell projection), GO:0005903 (brush border), GO:0005886 (plasma membrane), GO:0031526 (brush border membrane), GO:0031253 (cell projection membrane), GO:0016323 (basolateral plasma membrane)
Protein: Growth and differentiation factor 9 (Growth/differentiation factor 9) (Q5MD90)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Function: Not known
Subcellular location: Secreted {ECO:0000256|ARBA:ARBA00004613}.
Sequence: MATLFFKCSALCYLPRSLIVLAVLGLSITSSYNFENESVEPDVPLQHGNILSPLLKALSEQNPWGEFTHRTKPDSRYVRYMRRLYKQSSKPYRSPEASHLYNTARLITPREECLKQNREFFMQDISYSLNRVRSQEHLLKSVLLYSFDHNHLSPFSLLCYLDMKEQKSSKDQMCSNHLGIQHSVPLLSFRVHHRWVEVDVTSFLHPLIQAHKKDIHLLINLTCVEDMISRPGGQIHKSPVELTPRSPSLLLYLNDTSEVAYQRRSTQGRMVDLTSNHWDGKSTLWELTSRRRRGTLKSSETSMPKLVPMYEFTTDDCDLYDFRVSFKELKLDHWIIEPKKYNPRYCKGSCPRNVGFMYGSPMHTMVQNLIYEKLDSSVPRPTCVPSEYNPLSVLTFENDKSYAYKEYEEMIATKCACR
InterPro domains: - IPR015615: Transforming growth factor-beta-related (family) [36-418]
- IPR001839: Transforming growth factor-beta, C-terminal (domain) [290-418]
- IPR017948: Transforming growth factor beta, conserved site (conserved_site) [335-350]
- IPR029034: Cystine-knot cytokine (homologous_superfamily) [310-418]
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0048646 (anatomical structure formation involved in morphogenesis), GO:0031128 (developmental induction), GO:0007389 (pattern specification process), GO:0009799 (specification of symmetry), GO:0060061 (Spemann organizer formation), GO:0003002 (regionalization), GO:0009855 (determination of bilateral symmetry), GO:0009953 (dorsal/ventral pattern formation), GO:0048264 (determination of ventral identity), GO:0048262 (determination of dorsal/ventral asymmetry)
Cellular Component (CC): GO:0005575 (cellular component), GO:0032991 (protein-containing complex)
Protein: Putative amino-acid ABC transporter permease protein YhdX (P45767)
Organism: Escherichia coli (strain K12)
Function: Probably part of the binding-protein-dependent transport system YdhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane.
Subcellular location: Cell inner membrane {ECO:0000305}; Multi-pass membrane protein {ECO:0000255|PROSITE-ProRule:PRU00441}.
Sequence: MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTVTNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSAFDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWPIAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFIAEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVER
InterPro domains: - IPR010065: Amino acid ABC transporter, permease protein, 3-TM domain (domain) [84-147]
- IPR043429: ABC transporter membrane protein permease protein ArtM/GltK/GlnP/TcyL/YhdX-like (family) [69-392]
- IPR035906: MetI-like superfamily (homologous_superfamily) [71-390]
- IPR000515: ABC transporter type 1, transmembrane domain MetI-like (domain) [88-388]
Interaction partners: - Inner membrane amino-acid ABC transporter permease protein YhdY
- Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ
- Glutamate/aspartate import ATP-binding protein GltL
- Glutamine transport ATP-binding protein GlnQ
- Arginine ABC transporter permease protein ArtM
- L-cystine transport system ATP-binding protein TcyN
- Histidine/lysine/arginine/ornithine transport system permease protein HisQ
- Putative ABC transporter arginine-binding protein 2
- ABC transporter arginine-binding protein 1
- Glutamate/aspartate import permease protein GltK
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0042887 (amide transmembrane transporter activity), GO:1904680 (peptide transmembrane transporter activity), GO:0035673 (oligopeptide transmembrane transporter activity), GO:0071916 (dipeptide transmembrane transporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0006810 (transport), GO:0071702 (organic substance transport), GO:0071705 (nitrogen compound transport), GO:0072337 (modified amino acid transport), GO:0015695 (organic cation transport), GO:0015697 (quaternary ammonium group transport), GO:0015838 (amino-acid betaine transport), GO:0031460 (glycine betaine transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Pentatricopeptide repeat-containing protein At1g19720 (Protein DYW7) (Q9FXH1)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Not known
Sequence: MEKLFVPSFPKTFLNYQTPAKVENSPELHPKSRKKNLSFTKKKEPNIIPDEQFDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDCSCKDYW
InterPro domains: - IPR011990: Tetratricopeptide-like helical domain superfamily (homologous_superfamily) [50-786]
- IPR046960: Pentatricopeptide repeat-containing protein At4g14850-like, plant (family) [452-782]
- IPR002885: Pentatricopeptide repeat (repeat) [114-687]
- IPR032867: DYW domain (domain) [812-894]
Interaction partners: - Pentatricopeptide repeat-containing protein At1g26460
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0044237 (cellular metabolic process), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0006725 (cellular aromatic compound metabolic process), GO:0034641 (cellular nitrogen compound metabolic process), GO:1901360 (organic cyclic compound metabolic process), GO:0006139 (nucleobase-containing compound metabolic process), GO:0043170 (macromolecule metabolic process), GO:0046483 (heterocycle metabolic process), GO:0090304 (nucleic acid metabolic process), GO:0010467 (gene expression), GO:0016070 (RNA metabolic process), GO:0006396 (RNA processing), GO:0031425 (chloroplast RNA processing)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0009536 (plastid), GO:0009507 (chloroplast), GO:0043231 (intracellular membrane-bounded organelle)