Protein: High mobility group B protein 10 (Nucleosome/chromatin assembly factor group D 10) (Q9LTT3)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Binds preferentially DNA with A/T-rich content.
Subcellular location: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00267, ECO:0000255|PROSITE-ProRule:PRU00355, ECO:0000269|PubMed:19053246}.
Sequence: MSTDISPPYSQTHVEPVNGYPSDNKRCDDSSVPAKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYLEKPVSSLQSTDEALKSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQSQQTMETPSAIVQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEYHGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHESGATASTVAQ
InterPro domains: - IPR045303: HMGB9-like, ARID/BRIGHT DNA binding domain (domain) [42-127]
- IPR009071: High mobility group box domain (domain) [237-306]
- IPR001606: ARID DNA-binding domain (domain) [40-132]
- IPR036910: High mobility group box domain superfamily (homologous_superfamily) [220-319]
- IPR036431: ARID DNA-binding domain superfamily (homologous_superfamily) [34-148]
Interaction partners: - Actin-related protein 4
- At3g01890
- Chromatin structure-remodeling complex protein BSH
- SWI/SNF complex component SNF12 homolog
- Actin-related protein 5
- Actin-related protein 4A
- Histone deacetylase complex subunit SAP18
- SWI/SNF complex subunit SWI3D
- Actin-related protein 8
- SWI/SNF complex subunit SWI3A
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0005515 (protein binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0050789 (regulation of biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0019222 (regulation of metabolic process), GO:0050794 (regulation of cellular process), GO:0071840 (cellular component organization or biogenesis), GO:0009561 (megagametogenesis), GO:0030154 (cell differentiation), GO:0009889 (regulation of biosynthetic process), GO:0051171 (regulation of nitrogen compound metabolic process), GO:0060255 (regulation of macromolecule metabolic process), GO:0016043 (cellular component organization), GO:0031323 (regulation of cellular metabolic process), GO:0009559 (embryo sac central cell differentiation), GO:0048229 (gametophyte development), GO:0080090 (regulation of primary metabolic process), GO:0010556 (regulation of macromolecule biosynthetic process), GO:0009553 (embryo sac development), GO:0031326 (regulation of cellular biosynthetic process), GO:0019219 (regulation of nucleobase-containing compound metabolic process), GO:0051252 (regulation of RNA metabolic process), GO:0010197 (polar nucleus fusion), GO:0006996 (organelle organization), GO:0010468 (regulation of gene expression), GO:0006997 (nucleus organization), GO:2001141 (regulation of RNA biosynthetic process), GO:0048284 (organelle fusion), GO:0006355 (regulation of DNA-templated transcription), GO:0000741 (karyogamy), GO:1903506 (regulation of nucleic acid-templated transcription)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)