Protein: Polyadenylate-binding protein RBP47C' (Poly(A)-binding protein RBP47C') (RNA-binding protein 47C') (AtRBP47C prime) (AtRBP47C') (Q9SX80)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Heterogeneous nuclear ribonucleoprotein (hnRNP)-protein binding the poly(A) tail of mRNA and probably involved in some steps of pre-mRNA maturation.
Subcellular location: Nucleus {ECO:0000250}. Cytoplasmic granule {ECO:0000250}.
Sequence: MADVKVQSESESSDSHPLVDYQSLPPYPPPHPPVEVEENQPKTSPTPPPPHWMRYPPVLMPQMMYAPPPPMPFSPYHQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQPDPRMYPAAPYYPMYGGHQQQVS
InterPro domains: - IPR050825: RNA-binding protein 42/Polyadenylate-binding protein RBP45/47-like (family) [78-382]
- IPR035979: RNA-binding domain superfamily (homologous_superfamily) [66-380]
- IPR012677: Nucleotide-binding alpha-beta plait domain superfamily (homologous_superfamily) [102-386]
- IPR000504: RNA recognition motif domain (domain) [103-378]
Interaction partners: - AT3g17750/MIG5_4
- Large ribosomal subunit protein uL13y
- Large ribosomal subunit protein eL15y
- DEAD-box ATP-dependent RNA helicase 15
- RNA-binding motif protein 25
- Pre-mRNA-processing protein 40A
- Small ribosomal subunit protein eS27y
- Periodic tryptophan protein 2
- Protein SHORT ROOT IN SALT MEDIUM 1
- Helicase-like transcription factor CHR28
Gene Ontology annotations:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0048519 (negative regulation of biological process), GO:0009605 (response to external stimulus), GO:0065008 (regulation of biological quality), GO:0042221 (response to chemical), GO:0019222 (regulation of metabolic process), GO:0009607 (response to biotic stimulus), GO:0050794 (regulation of cellular process), GO:0009893 (positive regulation of metabolic process), GO:0048523 (negative regulation of cellular process), GO:0051707 (response to other organism), GO:0009892 (negative regulation of metabolic process), GO:0009894 (regulation of catabolic process), GO:0051172 (negative regulation of nitrogen compound metabolic process), GO:0043487 (regulation of RNA stability), GO:0043207 (response to external biotic stimulus), GO:0010604 (positive regulation of macromolecule metabolic process), GO:0010605 (negative regulation of macromolecule metabolic process), GO:0051171 (regulation of nitrogen compound metabolic process), GO:0060255 (regulation of macromolecule metabolic process), GO:0031323 (regulation of cellular metabolic process), GO:0009895 (negative regulation of catabolic process), GO:0080090 (regulation of primary metabolic process), GO:0031324 (negative regulation of cellular metabolic process), GO:0043489 (RNA stabilization), GO:0043488 (regulation of mRNA stability), GO:0031330 (negative regulation of cellular catabolic process), GO:0019219 (regulation of nucleobase-containing compound metabolic process), GO:0010628 (positive regulation of gene expression), GO:0051252 (regulation of RNA metabolic process), GO:0031329 (regulation of cellular catabolic process), GO:0051253 (negative regulation of RNA metabolic process), GO:0045934 (negative regulation of nucleobase-containing compound metabolic process), GO:0010468 (regulation of gene expression), GO:1902373 (negative regulation of mRNA catabolic process), GO:0048255 (mRNA stabilization), GO:0061013 (regulation of mRNA catabolic process), GO:1903312 (negative regulation of mRNA metabolic process), GO:1903311 (regulation of mRNA metabolic process), GO:1902369 (negative regulation of RNA catabolic process), GO:0010608 (post-transcriptional regulation of gene expression), GO:0070935 (3'-UTR-mediated mRNA stabilization)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005576 (extracellular region)