what is dsk
DSK is a k-mer counter for reads or genomes. It takes as input a set of sequences in FASTA or FASTQ format (see Input section). DSK outputs a set of solid kmers, i.e. kmers which occur more than a minimal amount of times in the input (-abundance-min parameter). It also outputs the number of times these kmers occur. See Results visualization section to learn how to use its output.