Comparing digital histology slides with multiple staining based on decoloring and dyeing technique Information in histology slides are usually visualized by different staining techniques, each of them unveils specific chemical and biological substances within tissue samples. Correlations between different stains can be useful to predict how certain tissue slides may look like if they were stained by other staining techniques. This work investigates two stains including hematoxylin and eosin (Hu0026E) and immunohistochemistry (IHC) in digital pathological slides. Four cases of surgical biopsies were used in this work. The specimens were subjected to two consecutive stains with a decoloring process based on ethanol and potassium permanganate in between. After each stain, slides were digitized and archived as results. Comparing the effects of the two staining pipelines, IHC slides after decoloring of Hu0026E showed that the cell structure was clear, the positive IHC staining was accurate, the background of the slide was clean, there was no DAB residue, and tissue fragments were intact. However, the other pipeline where IHC was stained before Hu0026E showed that the nuclear border was blurred. Eosin is lightly colored resulting in low contrast visualization of nucleoplasm, DAB is not completely decolored, and parts of tissue were fragmented. We conclude that, from the proposed staining and decoloring technique, tissue slides could be stained with IHC more effectively on decolored Hu0026E slides than those stained with Hu0026E after IHC. Utilizing digital section scanning technology, we can obtain pairs of tissue images stained differently while preserving the exact same tissue structure.

OpenHI2  Open source histopathological image platform. Transition from conventional to digital pathology requires a new category of biomedical informatic infrastructure which could facilitate delicate pathological routine. Pathological diagnoses are sensitive to many external factors and is known to be subjective. Only systems that can meet strict requirements in pathology would be able to run along pathological routines and eventually digitized the study area, and the developed platform should comply with existing pathological routines and international standards. Currently, there are a number of available software tools which can perform histopathological tasks including virtual slide viewing, annotating, and basic image analysis, however, none of them can serve as a digital platform for pathology. Here we describe OpenHI2, an enhanced version Open Histopathological Image platform which is capable of supporting all basic pathological tasks and file formats; ready to be deployed in medical institutions on a standard server environment or cloud computing infrastructure. In this paper, we also describe the development decisions for the platform and propose solutions to overcome technical challenges so that OpenHI2 could be used as a platform for histopathological images. Further addition can be made to the platform since each component is modularized and fully documented. OpenHI2 is free, opensource, and available at this https URL