Tet methylcytosine dioxygenase 3
Tet methylcytosine dioxygenase 3 is a protein that in humans is encoded by the TET3 gene. Function. "Tet3" and its respective protein TET 3 are members of the TET (ten-eleven-translocation) family of genes and proteins that play a role in DNA demethylation. DNA demethylation is the removal of suppressive methyl groups from the cytosine of DNA. Demethylating the DNA and removing these markers is associated with increased transcription. Since DNA methylation is a relatively strong and stable marker it is not often removed. However, there are important points in an organism’s life when  these marks benefit from being removed so that certain genes can be accessed and transcribed. One of which is right after an egg and sperm have come together to form a zygote. The methylation marks from the parent cells must be removed so that certain genes can be accessed and transcribed for the zygote to mature into a fully grown organism. "Tet3" plays an important role here. The TET3 protein works to demethylate the genome of the fertilized zygote to allow it to grow into a fully developed organism. It does this by starting a series of oxidation reactions that  convert the methylated cytosine on the DNA from 5-methyl cytosine (5mC) into 5-hydroxymethylcytosine (5hmC). This cytosine base then goes through a further series of reactions after which it can be removed either passively through replication-dependent dilution or actively by the enzyme thymidine DNA glycosylase and replaced with an unmethylated cytosine base. Once this occurs the DNA is now more accessible for transcription. There are certain tissues that rely heavily on "Tet3" for their development. For example, TET3 is found in large quantities in neurons and is important for their development and maturation. While there is not much  work regarding the role of "Tet3" in humans, studies have been done on model organisms such as mice, frogs, and rats. An experiment done by several researchers on mice showed that "Tet3" is most active in NPC or Neuronal Progenitor Cells. These cells are the progenitors of mature neurons and begin to develop shortly after a zygote is formed. Once an embryonic stem cell begins to differentiate into an NPC, "Tet3" becomes upregulated. The researchers speculate that this occurs in order to demethylate genes associated with neuronal maturation so they can be transcribed. While "Tet3" is not important for the  commitment of an embryonic stem cell to turn into an NPC, it is important for maintaining the cell as an NPC and eventually turning it into a mature neuron. The complete absence or knockout of "Tet3" in mouse cells leads to increased apoptosis of neurons, demonstrating how important the gene is to neuronal development. In addition, "Tet3" is important for repair and upkeep in mature neurons. Epigenetic markers, especially ones that make the DNA more accessible, are important after cell damage because they can turn on genes that function in cell repair. A recent study done in vivo in rats  has shown that the TET3 protein is important in recovery after a stroke. The study shows that TET3 as well as its product, 5-hydroxymethylcytosine (5hmC), are expressed more after focal ischemia in order to demethylate and turn on genes associated with DNA repair in neurons. Knockdown of the TET3 protein in these rats led to increased neuron damage after a stroke and a decreased expression of several genes that aid in neuron repair. These results not only demonstrate the importance of "Tet3" in neuronal repair but also suggest "Tet3" and its protein as a possible therapeutic target for future  studies that could aid patients in neuronal repair after a stroke. In humans, less is known about the exact role of "Tet3" in neurons. Current studies in humans are focusing on the effects of mutant "Tet3" on an individual’s phenotype. While the complete knockout of "Tet3" appears to be fatal to the developing zygote, the mutation of one or more alleles of "Tet3" can result in viable offspring. These mutations of "Tet3" can greatly affect the TET3 protein and lead to a class of neurodevelopmental disorders in humans known as TET3-deficiency syndrome. Individuals with these mutations experience phenotypes  such as developmental delay and growth abnormalities as well as features found in other neurodevelopmental disorders such as Sotos Syndrome and Autism Spectrum Disorder. Little is known about the exact mutations on "Tet3" that cause TET3-deficiency syndrome and their inheritance patterns. However, the mutations seem to follow a Mendelian pattern of inheritance. In a recent study of affected individuals and their families, some were found to have autosomal-dominant patterns of inheritance while others were found to have autosomal-recessive patterns of inheritance. Regardless of the inheritance pattern, all mutations in this gene were shown to be caused by  either a missense variant in the region of the gene that codes for the catalytic domain of TET3 or a frameshift or nonsense variant in the same region. The region in which this mutation occurs is highly conserved among species, especially mice and humans, which is why work done on model organisms may be useful in bettering our understanding of "Tet3"’s function in humans. In conclusion, the "Tet3" gene is important in a variety of organisms including humans, rats, and mice. It functions mostly during the formation of a zygote, particularly in neurons. There it helps neurons mature and  develop as well as aids them in repair. Clinical. Mutations in this gene have been associated a number of abnormal phenotypic features including intellectual disability, developmental delay, hypotonia, autistic traits, movement disorders, growth abnormalities and facial dysmorphism.