Thread block (CUDA programming) has been reported to have six transmembrane α-helical segments, while IID was reported to have only one. However, hydropathy plots show multiple peaks of hydropathy, rendering the experimental result, suggesting 1 TMS, questionable. These two proteins together are required for transport, although IIC is presumed to comprise all or most of the sugar transporting channel. Transport reaction. The generalized reaction catalyzed by members of the Man Family is: PTS Mannose-Fructose-Sorbose Family The PTS Mannose-Fructose-Sorbose (Man) Family (TC# 4.A.6) is a group of multicomponent PTS systems that are involved in sugar uptake in bacteria. This transport 	PTS Mannose-Fructose-Sorbose Family
17703584	Thread block (CUDA programming) Thread block (CUDA programming) A thread block is a programming abstraction that represents a group of threads that can be executed serially or in parallel. For better process and data mapping, threads are grouped into thread blocks. The number of threads in a thread block was formerly limited by the architecture to a total of 512 threads per block, but as of March 2010, with compute capability 2.x and higher, blocks may contain up to 1024 threads. The threads in the same thread block run on the same stream processor. Threads in the same block can communicate with each other 	Thread block (CUDA programming)
17703585	via shared memory, barrier synchronization or other synchronization primitives such as atomic operations. Multiple blocks are combined to form a grid. All the blocks in the same grid contain the same number of threads. The number of threads in a block is limited, but grids can be used for computations that require a large number of thread blocks to operate in parallel and to use all available multiprocessors. CUDA is a parallel computing platform and programming model that higher level languages can use to exploit parallelism. In CUDA, the kernel is executed with the aid of threads. The thread is 	Thread block (CUDA programming)
17703586	an abstract entity that represents the execution of the kernel. A kernel is a function that compiles to run on a special device. Multi threaded applications use many such threads that are running at the same time, to organize parallel computation. Every thread has an index, which is used for calculating memory address locations and also for taking control decisions. Dimensions. CUDA operates on a heterogeneous programming model which is used to run host device application programs. It has an execution model that is similar to OpenCL. In this model, we start executing an application on the host device which 	Thread block (CUDA programming)
17703587	is usually a CPU core. The device is a throughput oriented device, i.e., a GPU core which performs parallel computations. Kernel functions are used to do these parallel executions. Once these kernel functions are executed the control is passed back to the host device that resumes serial execution. As many parallel applications involve multidimensional data, it is convenient to organize thread blocks into 1D, 2D or 3D arrays of threads. The blocks in a grid must be able to be executed independently, as communication or cooperation between blocks in a grid is not possible. 'When a kernel is launched the 	Thread block (CUDA programming)
17703588	number of threads per thread block, and the number of thread blocks is specified, this, in turn, defines the total number of CUDA threads launched.' The maximum x, y and z dimensions of a block are 1024, 1024 and 64, and it should be allocated such that x × y × z ≤ 1024, which is the maximum number of threads per block. Blocks can be organized into one- or two-dimensional grids of up to 65,535 blocks in each dimension. The limitation on the number of threads in a block is actually imposed because the number of registers that 	Thread block (CUDA programming)
17703589	can be allocated across all threads is limited. Indexing. 1D-indexing. Every thread in CUDA is associated with a particular index so that it can calculate and access memory locations in an array. Consider an example in which there is an array of 512 elements. One of the organization structure is taking a grid with a single block that has a 512 threads. Consider that there is an array C of 512 elements that is made of element wise multiplication of two arrays A and B which are both 512 elements each. Every thread has an index i and it 	Thread block (CUDA programming)
17703590	performs the multiplication of i element of A and B and then store the result in the i element of C. i is calculated by using blockIdx (which is 0 in this case as there is only one block), blockDim (512 in this case as the block has 512 elements) and threadIdx that varies from 0 to 511 for each block. The thread index i is calculated by the following formula : formula_1 blockIdx.x is the x dimension block identifier blockDim.x is the x dimension of the block dimension threadIdx.x is the x dimension of the thread identifier Thus ‘i’ will 	Thread block (CUDA programming)
17703591	have values ranging from 0 to 511 that covers the entire array. If we want to consider computations for an array that is larger than 1024 we can have multiple blocks with 1024 threads each. Consider an example with 2048 array elements. In this case we have 2 thread blocks with 1024 threads each. Thus the thread identifiers' values will vary from 0 to 1023, the block identifier will vary from 0 to 1 and the block dimension will be 1024. Thus the first block will get index values from 0 to 1023 and the last one will have index 	Thread block (CUDA programming)
17703592	values from 1024 to 2047. Thus each thread will first calculate the index of memory that it has to access and then proceed with the calculation. Consider an example in which elements from arrays A and B are added in parallel by using threads and the results is stored in an array C. The corresponding code in a thread is shown below : __global__ void vecAddKernel (float *A , float *B , float * C , int n) 2D-indexing. In the same way in particularly complex grids, the blockId as well as the threadId need to be calculated by each thread depending on geometry 	Thread block (CUDA programming)
17703593	of the grid. Consider, a 2-dimensional Grid with 2-dimensional blocks. The threadId and the blockId will be calculated by the following formulae : formula_2 formula_3 Hardware perspective. Although we have stated the hierarchy of threads, we should note that, threads, thread blocks and grid are essentially a programmer’s perspective. In order to get a complete gist of thread block, it is critical to know it from a hardware perspective. The hardware groups threads that execute the same instruction into warps. Several warps constitute a thread block. Several thread blocks are assigned to a Streaming Multiprocessor (SM). Several SM 	Thread block (CUDA programming)
17703594	constitute the whole GPU unit (which executes the whole Kernel Grid). Streaming multiprocessors. Each architecture in GPU (say Kepler or Fermi) consists of several SM or Streaming Multiprocessors. These are general purpose processors with a low clock rate target and a small cache. An SM is able to execute several thread blocks in parallel. As soon as one of its thread blocks has completed execution, it takes up the serially next thread block. In general, SMs support instruction-level parallelism but not branch prediction. To achieve this purpose, an SM contains the following: The hardware schedules thread blocks to an 	Thread block (CUDA programming)
17703595	SM. In general an SM can handle multiple thread blocks at the same time. An SM may contain up to 8 thread blocks in total. A thread ID is assigned to a thread by its respective SM. Whenever an SM executes a thread block, all the threads inside the thread block are executed at the same time. Hence to free a memory of a thread block inside the SM, it is critical that the entire set of threads in the block have concluded execution. Each thread block is divided in scheduled units known as a warp. These are discussed in 	Thread block (CUDA programming)
17703596	detail in the following section. The warp scheduler of SM decides which of the warp gets prioritized during issuance of instructions. Some of the warp prioritizing policies have also been discussed in the following sections. Warps. On the hardware side, a thread block is composed of ‘warps’. A warp is a set of 32 threads within a thread block such that all the threads in a warp execute the same instruction. These threads are selected serially by the SM. Once a thread block is launched on a multiprocessor (SM), all of its warps are resident until their execution finishes. Thus 	Thread block (CUDA programming)
17703597	a new block is not launched on an SM until there is sufficient number of free registers for all warps of the new block, and until there is enough free shared memory for the new block. Consider a warp of 32 threads executing an instruction. If one or both of its operands are not ready (e.g. have not yet been fetched from global memory), a process called ‘context switching’ takes place which transfers control to another warp. When switching away from a particular warp, all the data of that warp remains in the register file so that it can be 	Thread block (CUDA programming)
17703598	quickly resumed when its operands become ready. When an instruction has no outstanding data dependencies, that is, both of its operands are ready, the respective warp is considered to be ready for execution. If more than one warps are eligible for execution, the parent SM uses a warp scheduling policy for deciding which warp gets the next fetched instruction. Different policies for scheduling warps that are eligible for execution are discussed below: Traditional CPU thread context switching" requires saving and restoring allocated register values and the program counter to off-chip memory (or cache) and is therefore a much more  heavyweight operation than with warp context switching. All of a warp's register values (including its program counter) remain in the register file, and the shared memory (and cache) remain in place too since these are shared between all the warps in the thread block. In order to take advantage of the warp architecture, programming languages and developers need to understand how to coalesce memory accesses and how to manage control flow divergence. If each thread in a warp takes a different execution path or if each thread accesses significantly divergent memory then the benefits of the warp architecture are  lost and performance will significantly degrade. Thread block (CUDA programming) A thread block is a programming abstraction that represents a group of threads that can be executed serially or in parallel. For better process and data mapping, threads are grouped into thread blocks. The number of threads in a thread block was formerly limited by the architecture to a total of 512 threads per block, but as of March 2010, with compute capability 2.x and higher, blocks may contain up to 1024 threads. The threads in the same thread block run on the same stream processor. Threads in the same