Avian coronavirus
Avian coronavirus is a species of virus from the genus "Gammacoronavirus" that infects birds; since 2018, all gammacoronaviruses which infect birds have been classified as this single species. The strain of avian coronavirus previously known as infectious bronchitis virus (IBV) is the only coronavirus that infects chickens. It causes avian infectious bronchitis, a highly infectious disease that affects the respiratory tract, gut, kidney and reproductive system. IBV affects the performance of both meat-producing and egg-producing chickens and is responsible for substantial economic loss within the poultry industry. The strain of avian coronavirus previously classified as Turkey  coronavirus causes gastrointestinal disease in turkeys. Classification. IBV is in the genus "Gammacoronavirus", or group 3, with a non-segmented, positive-sense single-stranded RNA genome. It was previously the type species of its genus "Igacovirus". When there was only one genus of coronaviruses, the genus "Coronavirus", it was the type species of the group of all known coronaviruses. Recombination. When two strains of coronavirus IBV infect a host they may recombine during genome replication. Recombination appears to contribute to the genetic variation of the IBV genome found in nature. Pathology. Respiratory system. When inhaled, virus will attach to glycoprotein  receptors containing sialic acid on ciliated epithelial cells of the respiratory epithelium. The respiratory replication will result in loss of ciliary activity, mucus accumulation, necrosis and desquamation, causing respiratory distress, râles and asphyxia. Local virus replication will result in viremia, spreading the infection into other tissues and organs. Other respiratory diseases of chickens ("Mycoplasma gallisepticum", avian infectious laryngotracheitis ("Gallid alphaherpesvirus 1"), Newcastle disease (avian paramyxovirus 1), "Avian metapneumovirus" infection may be confused clinically to infectious bronchitis. Kidney. Through viremia, some nephrotropic strains (most of high virulence) could infect the kidney epithelium in tubules and nephron, causing kidney failure. At gross  examination, kidneys may appear swollen and pale in color and with urates in ureters Reproductive system. In hens, the viremic IBV will also reach the oviduct, causing lesions in the magnum (the egg-white gland) and in the uterus (the egg-shell gland), leading to a sharp decline of egg production, shell-less, fragile or roughened shells eggs (uterus lesion) with watery whites (magnum lesion). Infection of chickens at puberty, during the oviduct development, will impede oviduct formation and destroy future laying capacity, resulting in "false layers". However, other diseases affecting layer chickens could lead to that condition. Vaccines. There  are both attenuated vaccines and inactivated vaccines available. Their effectiveness is diminished by poor cross-protection. The nature of the protective immune response to IBV is poorly understood, but the surface spike protein, the amino-terminal S1 half, is sufficient to induce good protective immunity. Experimental vector IB vaccines and genetically manipulated IBVs—with heterologous spike protein genes—have produced promising results, including in the context of in ovo vaccination.