Assertion: monocle | /r/CapableOf | use umap
Facets:
value: by default
type: MANNER
value: to embed cells
type: PURPOSE
value: in a low dimensional space
type: LOCATION
Source sentences:
text: Monocle 3 uses UMAP to embed cells in a low dimensional space, and then uses our principal graph embedding algorithms to learn a trajectory that fits the cells' UMAP coordinates.
text: Monocle 3 uses UMAP by default, as we feel that it is both faster and better suited for clustering and trajectory analysis in RNA-seq.