Assertion: dinoflagellate's genome | /r/HasProperty | supplementary table
Facets:
Source sentences:
text: Using a gene-prediction workflow customised for dinoflagellate genomes  (see the ‘Methods’ section), we predicted 58,232 and 51,713 protein-coding genes (hereinafter genes) in the CCMP1383 and CCMP2088 genomes, respectively (Table 2 and Additional file 3: Supplementary Table 12).
text: The repeat content of the assembled genomes ranged from 16.0% (S. kawagutii) to 27.9% (Symbiodinium microadriaticum); a large peak in transposable element (TE) abundance observed at high divergence (Kimura distance22 15–25) in all genomes (Supplementary Fig. 3) suggests that most extant TEs are remnants of an ancient burst of TE activity that had occurred before the diversification of Symbiodinium.
text: As expected, the number of predicted genes in all six (haploid) genomes of Symbiodiniaceae is roughly similar to the rough estimate of haploid gene number for the two P. glacialis genomes (Table 2 and Additional file 3: Supplementary Table 12).
text: Protein kinase (Pfam PF00069), reverse transcriptase (PF07727), ion transport protein (PF00520) and ankyrin repeats (PF12796) are among the most-abundant domains in Symbiodinium, appearing among the ten most abundant for each of the four genomes (Supplementary Table 12).
text: Here, using known proteins in bacteria, fungi and cnidarians as queries, we recovered all five enzymes including the short-chain dehydrogenase from the S. microadriaticum, S. goreaui and S. kawagutii genomes (Supplementary Table 15); ATP-grasp was not found in S. minutum.
text: When these proteins were compared against those from S. microadriaticum and S. minutum, 35.1% of the identified homologous protein sets were recovered in all four genomes (Supplementary Fig.