Question: how do the structures of eukaryotic and prokaryotic flagella differ?
Answer: Summary. English: Prokaryotic flagella run in a rotary movement, while eukaryotic flagella run in a bending movement. The prokaryotic flagella uses a rotary motor,and the eukaryotic flagella uses a complex sliding filament system. Eukaryotic flagella is ATP driven, while prokaryotes are proton driven.