Spreadsheet: 36052958-bb74-4f2d-a9b8-3a1e614c30d5
Sheet: RM1221

Table S11. sRNA candidates in the chromosomes of four C. jejuni strains - RM1221.
This table lists sRNA candidates in strain RM1221.
sRNA | Strand | Start | End | Length | Orientation | LFG | RFG | LFG Description | RFG Description | Comments
SRP RNA | + | 65630 | 65737 | 108 | <>> | [NAME] | CJE0045 | hypothetical protein | hypothetical protein | Detected on Northern blot.
CJnc10 | + | 93253 | 93348 | 96 | >>< | CJE0079 | CJE0080 | hypothetical protein | aspartate racemase, putative | Detected on Northern blot.
TPP | + | 456573 | 456708 | 136 | >>> | CJE0502 | CJE0503 | DNA polymerase III subunit epsilon | thiamine biosynthesis protein (thiC) | Detected on dRNA-seq data. Not probed on Northern blot.
[NAME] | + | 468429 | - | >100 | >>< | CJE0513 | CJE0515 | zinc protease-like protein | group III truncated haemoglobin | Detected in dRNA-seq data. Not detected on Northern blot.
RnpB | - | 591873 | 591557 | 317 | ><> | CJE0654 | CJE0655 | hypothetical protein | elongation factor P | Detected on Northern blot.
Cjnc60 | - | 750538 | 750258 | 281 | ><> | CJE0817 | [NAME] | hypothetical protein | DNA polymerase III subunit alpha | Detected on Northern blot. Note: Probably corresponds to a small mRNA. Contains non-annotated selW ORF [1].
CJnc90 | - | 1071289 | 1071193 | 96 | ><> | CJE1154 | CJE1155 | hypothetical protein | hypothetical protein | Detected on Northern blot.
CJnc110 | + | 1248773 | 1248909 | 137 | >>> | CJE1332 | CJE1333 | S-ribosylhomocysteinase | 2OG-Fe(II) oxygenase family oxidoreductase | Detected on Northern blot.
CJnc120 | + | 1271831 | 1271927 | 97 | >>> | CJ1355 | CJ1357 | groES | sensor histidine kinase | Detected on Northern blot (processed from 3’ end of CJE1356)
6S RNA (CJnc130) | + | 1300366 | 1300551 | 186 | >>> | CJE1386 | CJE1386 | hypothetical protein | phosphoribosylamine-glycine ligase | Detected on Northern blot.
pRNA | - | 1300402 | 1300389 | 14 | ><> | CJE1386 | CJE1386 | hypothetical protein | phosphoribosylamine-glycine ligase | Detected on dRNA-seq data. Not probed on Northern blot.
[NAME] | + | 1309487 | 1309559 | 73 | >>> | CJE1394 | [NAME] | putative phosphotyrosine protein phosphatase | major outer membrane protein | Detected on Northern blot.
tmRNA | - | 1448922 | 1448564 | 359 | <<< | CJE1552 | CJE1553 | hypothetical protein | hypothetical protein | Detected on Northern blot.
crRNA1 | + | 1594145 | 1594182 | 38 | >>> | CJE1693 | crRNA2 | Putative molybdopterin biosynthesis MoeA protein | crRNA2 | Detected on dRNA-seq data. Not probed on Northern blot.
crRNA2 | + | 1594211 | 1594248 | 38 | >>> | crRNA1 | crRNA3 | crRNA1 | crRNA3 | Detected on dRNA-seq data. Not probed on Northern blot.
crRNA3 | + | 1594277 | 1594314 | 38 | >>> | crRNA2 | TracrRNA | crRNA2 | TracrRNA | Detected on dRNA-seq data. Not probed on Northern blot.
TracrRNA | + | 1594409 | 1594482 | 74 | >>< | crRNA3 | CJE1694 | crRNA3 | CRISPR-associated protein 2 (cas2) | Detected on Northern blot.
CJnc160 | + | 1695716 | 1695742 | 27 | <>< | CJE1797 | CJE1798 | serine transporter | hypothetical protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc170 | + | 1700974 | 1701021 | 48 | >>< | CJE1805 | CJE1806 | hypothetical protein | chorismate synthase | Detected on dRNA-seq data. Oligo did not bind to RM1221 CJnc170 in Northern blot.
CJnc180 | + | 1716312 | 1716466 | 99 | >>< | CJE1822 | [NAME] | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc190
CJnc190 | - | 1716340 | 1716556 | 217 | ><< | CJE1822 | [NAME] | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc180
CJnc230 | - | 1774449 | 1774352 | 98 | <<< | CJE1895 | CJE1896 | homoserine O-acetyltransferase | flagellar hook protein (flgE) | Detected on Northern blot (processed)
CJnc160 | + | 1695716 | 1695742 | 27 | <>< | CJE1797 | CJE1798 | serine transporter | hypothetical protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJas_Cj0363c | + | 367027 | 367109 | 83 | >>> | CJE0410 | CJE0413 | [NAME] peptidase | hypothetical protein | Detected in dRNA-seq data. Transcribed from the 3’ end of CJE0411. Antisense to CJE0412 (coproporphyrinogen III oxidase). Not detected on Northern blot.
CJas_Cj0704 | - | 740532 | - | >100 | ><> | CJE0803 | CJE0805 | hypothetical protein | hypothetical protein | Detected on Northern blot. Antisense to CJE0804 (glycyl-tRNA synthetase subunit alpha).
CJas_Cj1667c | + | 1730939 | - | >100 | <>< | CJE1838 | CJE_tRNA-Leu-4 | hypothetical protein | tRNA-Leu | Detected on Northern blot. Antisense to 5’ end of CJE1839 and 3’ of CJE1840.
CJas_Cj0168c | + | 164655 | - | >100 | >>> | CJE_tRNA-Glu-1 | CJE0164 | tRNA-Glu | superoxide dismutase | Detected in dRNA-seq data. Antisense to CJE0163. Not detected on Northern blot.
[1] Gursinsky, [NAME]. Factors and selenocysteine insertion sequence requirements for the synthesis of selenoproteins from a gram-positive anaerobe in Escherichia coli. Appl Environ Microbiol 74, 1385-1393 (2008).