Spreadsheet: 014a6b67-e73e-413b-90ca-e2c8466049c1
Sheet: Table S1

Supplementary [NAME].  SNP name, contig, functional annotation, sequence similarity, variant, SNP position and SNP effect for Plex-48. SNPs for which no positions were made available by previous author are indicated in red.
Isolation method | SNP name | EST/Contig | Functional annotation | E-Value | Identity | Variant | SNP position | SNP effect
[NAME] | 3B4_2 | 3B4 | 60s Ribosomal protein l8 | 5.77712e-79 | 0.938 | T/C | 561 | UTR
 | 3B4_7 |  |  |  |  | A/T | 492 | UTR
2008 | 3D10_1 | 3D10 | Haemocyanin | 4e-76 | 1 | A/G | 122 | UTR
Targeted approach | 2H9_2 | 2H9 | Ribosomal protein L22 | 1e-14 | 0.82 | A/T | 177 | UTR
[NAME], 2008 | HdSNPc148_820T_C | HdSNPc148 | [NAME] | 4.51926e-158 | 0.974 | T/C | - | Synonymous
 | HdSNPc106_688C_T | HdSNPc106 | Tubulin alpha-1a chain isoform 2 | 0 | 0.9895 | C/T | - | Synonymous
 | HmSNPc4_815C_T | HmSNPc4 | Microsatellite sequence | 3e-55 | 0.99 | C/T | - | Non-synonymous
 | HaSNPdw500_207C_T | HaSNPdw | Microsatellite sequence | 3e-50 | 0.97 | C/T | - | UTR
 | HmLCS5M193T_A | HmLCS5M | - | - | - | T/A | 196 | -
 | HmLCS5M479C_T |  | Opacity protein | 9.19908e-26 | 0.5425 | C/T | 484 | Synonymous
 | HmLCS55T318G_T | HmLCS55T | Microsatellite sequence | 4e-70 | 0.99 | G/T | 322 | Non-synonymous
 | HmRS36T262T_C | HmRS36T | 5-Formyltetrahydrofolate cyclo-ligase | 4.329e-22 | 0.6355 | T/C | 306 | Synonymous
in vitro SNPs | SNP101_113 | Contig 101 | Myosin heavy chain | 1.11629e-33 | 0.842 | A/C | 113 | UTR
 | SNP101_201 |  |  |  |  | C/G | 201 | UTR
 | SNP146.2_132 | Contig 146 | ADP/ATP carrier protein | 6.05813e-178 | 0.835 | A/G | 132 | Synonymous
 | SNP146.3_123 |  |  |  |  | T/G | 123 | Non-synonymous
 | SNP149.1_106 | Contig 149 | Heat shock protein 70 | 5.46089e-53 | 0.932 | A/C | 106 | UTR
 | SNP149.1_374 |  |  |  |  | C/G | 374 | Non-synonymous
 | SNP149.2_165 |  |  |  |  | A/G | 165 | Synonymous
 | SNP149.4_75 |  |  |  |  | A/G | 75 | UTR
 | SNP149.4_341 |  |  |  |  | T/C | 341 | UTR
 | SNP210_266 | Contig 210 | - | - | - | T/G | 266 | -
 | SNP214_86 | Contig 214 | Ribosomal protein l10 | 9.54587e-76 | 0.8915 | T/C | 86 | Non-synonymous
 | SNP214_434 |  |  |  |  | T/C | 434 | UTR
 | SNP342.2_537 | Contig 342 | Heat shock protein | 6e-23 | 86 | T/C | 537 | UTR
 | [NAME] | Contig 449 | s-Adenosylmethionine synthetase isoform type-1 | 2.46439e-64 | 0.9365 | A/G | 110 | Non-synonymous
 | SNP449.2_443 |  |  |  |  | T/C | 443 | Synonymous
 | SNP1718_109 | Contig 1718 | Nadh dehydrogenase subunit 1 | 3.91247e-33 | 0.9415 | A/T | 109 | UTR
 | SNP1833_160 | Contig 1833 | Alpha tubulin | 1.09488e-148 | 0.9885 | A/G | 160 | UTR
 | SNP1834_76 | Contig 1834 | Tubulin alpha-1a chain- partial | 8.77076e-153 | 0.988 | A/G | 76 | UTR
 | SNP1834_464 |  |  |  |  | A/G | 464 | Non-synonymous
 | SNP1949_235 | Contig 1949 | Ribosomal protein l3 | 2.21965e-30 | 0.9225 | A/C | 235 | UTR
 | SNP4691_183 | Contig 4691 | Heat shock protein 70 | 5.53608e-64 | 0.914 | A/G | 183 | UTR
 | SNP17550.1_463 | Contig 17550 | Clathrin heavy chain 1 | 0 | 0.893 | A/G | 463 | Non-synonymous
 | SNP17550.3_221 |  |  |  |  | A/T | 221 | UTR
 | SNP17550.3_555 |  |  |  |  | A/T | 555 | UTR
in silico SNPs | SNP48_322 | Contig 48 | Collagen alpha-4 chain | 0 | 0.4605 | T/G | 322 | UTR
 | SNP67_164 | Contig 67 | Collagen alpha-6 partial | 3.92944e-119 | 0.752 | A/G | 164 | UTR
 | SNP140_2421 | Contig 140 | Na+ K+-atpase alpha subunit | 0 | 0.898 | T/C | 2421 | Synonymous
 | SNP229_2772 | Contig 229 | 14-3-3 Zeta | 1.19486e-108 | 0.777 | T/C | 2772 | UTR
 | SNP300_1828 | Contig 300 | - | - | - | A/G | 1828 | -
 | SNP972_1055 | Contig 972 | Myosin heavy chain | 0 | 0.842 | T/C | 1055 | Synonymous
 | SNP1001_388 | Contig 1001 | Cre-sca-1 protein | 8.99871e-28 | 0.8285 | T/C | 388 | UTR
 | SNP2091_264 | Contig 2091 | - | - | - | A/C | 264 | -
 | SNP3129_923 | Contig 3129 | Arginine kinase | 0 | 0.806 | A/G | 923 | Synonymous
 | SNP5837_204* | Contig 5837 | Mucus-associated protein partial | 1.25405e-51 | 0.93 | T/C | 204 | Non-synonymous
 | SNP13865_165 | Contig 13865 | Cathepsin l | 8.62657e-43 | 0.6935 | T/C | 165 | UTR
 | SNP20648_3041 | Contig 20648 | [NAME]-c isoform 4 | 0 | 0.725 | A/G | 3041 | Synonymous