Spreadsheet: 48b8d725-87dd-4882-be4b-040a154a8167
Sheet: Sheet1

[NAME] | Putative Function | AGAP | Forward [NAME] | Reverse PCR Primer | Gene Region | [NAME] Sequence | Chromosome | SNP Location
AgMDL1 | Recognition | AGAP012352 | ATCTGCCTCGCTGATGATCT | [NAME] | Coding | GCACATACCGGGGGTAAA | 3L | 40910564
 |  |  |  |  | Coding | GCAGTCAGCTCGTTTGCG | 3L | 40910463
 |  |  | TACGGCACGGATACGTACAA | ATTCCCGCTACTGTTCATCG | Upstream | CACCTGGTGTCACAGGA | 3L | 40911948
 |  |  |  |  | Upstream | GAGATCGAGCGAGCGTGT | 3L | 40912362
 |  |  |  |  | Upstream | [NAME] | 3L | 40912305
AgMDL2 | Recognition | AGAP002857 | TTCGAGTGGCTACCGAGAGT | CCGCAGCTCACACAATCTTA | Intron | GGAGGTAAGCGTTTCGTCAC | 2R | 28318283
 |  |  |  |  | Coding | CTACCGTTGCCGTTCGT | 2R | 28317930
 |  |  |  |  | Coding | GCGAACAGATACGGGCA | 2R | 28317909
APL1a | Recognition | AGAP007036 | ACCTCCCAGTCTTGGCCTAT | TGGTGTCGTTGAAGTTCTGC | Upstream | GTGCCTTTTTGTATATGTTGAGCAG | 2L | 41276366
 |  |  |  |  | Upstream | GCGTGTTTGGTTGTTGGGT | 2L | 41276444
 |  |  |  |  | Upstream | AGGGTTCAAGCCCCAAATG | 2L | 41276562
APL1c | Recognition | AGAP007033 | GGATATAACACTAAACAACC + | GGAAAGATCCACGTCAACCA + | Coding | GGAGCGCATCGAAGACGA | 2L | 41259161
 |  |  |  |  | Coding | GCTTCAGAATGGTCAACTCCA | 2L | 41258962
 |  |  |  |  | Coding | CGCGTGGCAGGCTG | 2L | 41259249
APL2 / LRRD7 | Recognition | AGAP005693 | [NAME] | AACTGTTGCTCACCGATTCC | Coding | CAGAACGGGCTGGGC | 2L | 18786108
 |  |  |  |  | Coding | GGACAAATCGTCAAACACGCC | 2L | 18786047
 |  |  |  |  | Coding | ACGTAGGTTCGGTGGAATTCT | 2L | 18786257
 |  |  |  |  | Coding | CGATTGAACGACAGATCGAGCG | 2L | 18786414
 |  |  | AGGAAACCCGTACGAGAGGT | CATTCGACATGGCACTTCTG | Upstream | GCGYTTAATGAGGTGGTGG | 2L | 18784235
 |  |  |  |  | Upstream | CGACGGCAAACGTTGCG | 2L | 18784752
APOD | Lipid transport | AGAP002593 | TCATGTCGTTCGTACGGTGT | AAACCCCTGCAAGATGCTTA | Coding | GAAATACTGCACGACCGGA | 2R | 23677758
 |  |  | CCTGGTTGAACCCGAGTAAA | CATCGGTACACGATCGACAC | Upstream | CCATCGTTAGATAGTTAAGCCG | 2R | 23675873
 |  |  |  |  | Upstream | CGCCACGGTAACAGCG | 2R | 23675896
CASPS1 | Effector | AGAP011949 | AAGCTGCGAATCGACAAACT | AAAGGGTGCCTGCTGACTTA | Coding | TGTGTTCATTCAAACGTGTCGCG | 3L | 35503929
CASPS4 | Effector | AGAP011951 | CGACACAAGTAATGCTAGGCG # | CCATACAGGGCATCTGCTTC # | Coding | CGGCAAGCTGCTTGAGC | 3L | 35507702
 |  |  |  |  | Coding | CGGAATCTATGCTTATGGTTGCT | 3L | 35507474
CASPS6 | Effector | AGAP004920 | TCACTCGTAGCAAGCGTTCC # | TCCTTGCTATTTCCATGCTCC # | Coding | GTACAACGGTTTTAGCAACCTGT | 2L | 6047570
 |  |  |  |  | Coding | TGCTCGGTTGTGGTAGTTCT | 2L | 6047606
 |  |  | TGTCGTTGAACGGTGAACAT | TGTCGTTGAACGGTGAACAT | Upstream | GCACAACCTCTGCAATTGACAT | 2L | 6045698
 |  |  |  |  | Upstream | CAAAGCCAATTTCCGAACACTCT | 2L | 6045942
CEC1 | Effector | AGAP000693 | CAAGCACCACGATAAGCAGA | TGTACAAACACCGACCGAAA | Upstream | GTTGTGCGTTATTCCGCTGTTG | X | 12441661
 |  |  |  |  | Upstream | AAGACCAGACACGAGAGCAG | X | 12441935
 |  |  |  |  | Upstream | CTCATTCTTGCGCAGCCG | X | 12441871
CEC2 | Effector | AGAP000692 | CTATAAAATGCGCCCGGTTG # | CCGAGGTTTGAACTGCTCAC # | UTR | CGAAGGTGGGGAGTTCT | X | 12437668
 |  |  |  |  | UTR | GCACTTTATTGGAACGGTTGTG | X | 12437546
CEC3 | Effector | AGAP000694 | GACCGTTTCCAACCTCAAAA | CAAGCACCACGATAAGCAGA | Upstream | CCGCAAACAAAGCAGCATGA | X | 12441793
 |  |  |  |  | Upstream | GAGACACGCTGAGCAGC | X | 12442013
Chitinase | Extracellular Matrix | AGAP006414 | GGACGGATGATGCGATAGTT | TCACAAAGCGTCGCACTTAC | Upstream | GCACTTGTTGGATATATTGCCG | 2L | 31611621
CLIPA1 | Modulation | AGAP011791 | GAAAGTGCGCTCAAGTACCTGT  # | GCTCCTTCTCGTACGTGTAGCTC # | Coding | CGATACCCCACATCGACAG | 3L | 33282601
 |  |  |  |  | Coding | GGCATGGTTCCCTCGAC | 3L | 33282454
 |  |  |  |  | Coding | GTCGGTGTAGCCTGCTT | 3L | 33282148
CLIPB4 | Modulation | AGAP003250 | CAACGAACGCTACATCCTCA | AGTCGCTCGTTACAGGTCGT | Coding | [NAME] | 2R | 34472257
 |  |  |  |  | Coding | GCCGGTGAGCAATCCTT | 2R | 34472245
 |  |  | GAGCACATTGCCTCAATCAA | CCACACGAATTCTGATGCAC | Upstream | [NAME] | 2R | 34473971
CLIPB6 | Modulation | AGAP003252 | GGTGGTAGTGGTGGTACATTCG # | GAGTTGGCACAGTCCTGGTC # | Coding | CGTCGAACGTGGTCCGTTT | 2R | 34479372
 |  |  |  |  | Coding | CGGTGTACTGGCGGG | 2R | 34479486
CLIPB7 | Modulation | AGAP002270 | ACCGCTTAACAGGTTTGGTG # | CCTTTCGTCCGATGCTGTAT # | Coding | TCCGTTCGCTCGCGC | 2R | 18410712
 |  |  |  |  | Coding | TGCAATGCACCGAACATTACC | 2R | 18410600
CLIPB8 | Modulation | AGAP003057 | ACTGTGTGACCGGGAAGAAC # | CCCGGTGTACATTTTGATCC # | Coding | GTACTCGCGCAGCCG | 2R | 31601056
 |  |  | [NAME] | TGTTTGCCGTACCAAGAGTG | Upstream | ACCACTCCTCAAGATCACCT | 2R | 31604911
CLIPB15 | Modulation | AGAP009844 | GGTGGTTAGTTTGTTTGATCGTG # | CATTGAACGTGACATCGCTG # | Coding | CGGGACCTGTGAGCC | 3R | 44101609
 |  |  |  |  | UTR | AGCTAAAACCCGATGAGGTC | 3R | 44101810
 |  |  | GCAGCGATGAGTGCAATTTA | TGCAGGTTTTTACGGGAAAC | Upstream | CGCGACATTCAAGTGGGTTAATT | 3R | 44099653
 |  |  |  |  | Upstream | CTGCCCTCCCAGACAAC | 3R | 44100085
 |  |  |  |  | Upstream | GGAAAGAACAGTGTAGACGGC | 3R | 44100114
CLIPB17 | Modulation | AGAP001648 | TGGATGGCGAATCTGGTTTA # | CAACGCCATATTGTCCAGGA # | Coding | CGTACCGCGACTTGCC | 2R | 7280235
 |  |  | AACTGATGCCGATTCCAGAG | TGGTTGAAGGCAGATTCACA | Coding | CCATCGCTACAAACGTGTCC | 2R | 7277304
 |  |  |  |  | Upstream | CACAGCTATGCCGGGA | 2R | 7277884
CLIPD1 | Modulation | AGAP002422 | ACCAAGCAGCTGTCCAAGAT # | CTCGTCAAACAGCCACTCAA # | Coding | GTGGCGGAAATTCGGGC | 2R | 21083610
 |  |  |  |  | Coding | GGGCACACAGTTCTTCGG | 2R | 21083442
CTL2 | Recognition | AGAP010707 | GCATGGGATCAGTGCATAATG # | CACATAAGGATATTCCCGAGTGC # | Coding | AGTGTAATCAGAAAAGCAGGAGTTAC | 3L | 8869869
 |  |  |  |  | Coding | CAAGCTGCGTTCCCGAAA | 3L | 8869856
CTLMA2 | Recognition | AGAP005334 | CACGCATACCTCTTATCATCGC  # | TGTTGACAGATGAACGGCTTC # | Coding | CACGAACCACTGTGATGACAG | 2L | 14232746
CTLMA6 | Recognition | AGAP005332 | GAAAACGATCGGTTGGAGAA | CATCGTGGTCACTGGAATTG | UTR | TGACCATTCATCGACGTCCAT | 2L | 14231217
 |  |  |  |  | UTR | GAGGGGGTATGGGCAAT | 2L | 14230997
CTLMA3 | Recognition | AGAP007412 | CGAAACGCTTGGCTAACTTG # | CATGAAGAAGTTGTTCGCCC # | Coding | CCGACGCCTTATACCAGTT | 2L | 46355428
DCCE2 | Effector | AGAP003095 | TCGATCTGAACACGAACGAG | [NAME] | Coding | CGCACTGTCCAGCAACTC | 2R | 32420897
 |  |  |  |  | Coding | GACTCGAACAAACCGTTCGC | 2R | 32421101
DCElike1 | Effector | AGAP010280 | AGTGGCACCGTGGTCTTTAC | GCGAGAGGATCAAAATGGAA | Coding | CATTCCTTTGCACGGTTCTACT | 3R | 51983023
[NAME] | Recognition | AGAP011197 | [NAME] ^ | GGCAGTTGTTGTACCACCAG ^ | Coding | AATAATCTAACCGCGCTGCAG | 3L | 19243015
 |  |  |  |  | Coding | GGTATCGGACAGAACCAGG | 3L | 19243101
FBN22 | Recognition | AGAP010775 | TGCAGGACAAACTGAACGAA # | CTGTGTACGATCCGAGCTTTG # | Coding | GACTTTTACCGCAACTGGG | 3L | 10162302
 |  |  |  |  | Coding | GCACGAAAGCACGAGCTG | 3L | 10162397
GALE3 | Recognition | AGAP004934 | AAAGTGGAAACAGCTCGCCT # | CCCATTCCAGTTCGATCAGA # | Coding | TGAACCAGTTCGGCAGCA | 2L | 6200063
 |  |  |  |  | Coding | CTGGCAGACGTTTCTTGAGATC | 2L | 6199980
Gambicin | Effector | AGAP008645 | TGCGAGATGTAAAAGCATCG | ACCAGAAGCGAAGGTTGATG | UTR | CATCATCGGCAGGACCG | 3R | 13897086
 |  |  |  |  | UTR | GGTGTTGTGCGAGCG | 3R | 13897119
 |  |  | TGGATCAACATGCACGATTC | CACCGAGATGGGGAGTTTTA | Upstream | CTAATCTTTGGACTCGGTAGTCAA | 3R | 13895909
 |  |  |  |  | Upstream | CACCTCTATTGCCGTCTTCTT | 3R | 13896298
 |  |  |  |  | Upstream | CGGGTTCTCACAGTGTAGT | 3R | 13895995
GNBPA1 | Recognition | AGAP006761 | TTTGGCGTATATGTGGCGTA | CGATGACACTTGCTCTCCAA | Upstream | TGGAGGAAGATCACTTTAAAGACC | 2L | 37927140
 |  |  |  |  | Upstream | GATACCGCTAGACATGTCAAACAA | 2L | 37927263
GNBPB2 | Recognition | AGAP002798 | CGTTCAGCTTCAGGTATGGAA # | GCACGTAGTCAATCTGTAGCGA # | Coding | GCGGCAATATGGACTACCG | 2R | 27651407
 |  |  |  |  | Coding | GGACAGGGTTGGAACAC | 2R | 27651275
GNBPB3 | Recognition | AGAP002799 | GTACCCTGAACATCCATGGTG # | GTTGTTCGACCACGGCTTAC # | Coding | CGATTCTCGGTTGACAACCAG | 2R | 27646236
 |  |  |  |  | Coding | CGAGGGGTTCGGTCC | 2R | 27646378
 |  |  |  |  | Coding | GTTCCAGAAACCAGTGCC | 2R | 27646216
[NAME] | Effector | AGAP001659 | CGATCCGGTGTTCTACCAGT | GAAAGCGTCTGATCGTAGCC | Coding | CGTGACCAGCTTGTCCAT | 2R | 7553532
HECY2 | Effector | AGAP001657 | GAAGAAGTTCGGCAAGATCG | TGCGTTAACCAAATCCCTTC | Coding | GCATGCCGTTCCAGCT | 2R | 7535177
 |  |  |  |  | Coding | CCCTTGGGCAGCATCA | 2R | 7535221
ICHIT | Recognition | AGAP006432 | CCGTTGCCGCACTATTTTAT | GTTGTTGGAGGGTACGCTGT | Coding | GCATGGGAGTATGAGTGTCC | 2L | 31789378
 |  |  |  |  | Coding | CCACCACCACCACCA | 2L | 31789719
 |  |  |  |  | Coding | CAACAGCCACAACAACAACGC | 2L | 31789770
IMD | Signal Transduction | AGAP004959 | TTACGGGGACGAGACTATGG | TAACTACTCCGCTCGGGAGA | Coding | GGAGCATCACACAGCGACA | 2L | 7194947
 |  |  |  |  | Coding | [NAME] | 2L | 7195096
IRSP1 | Effector | AGAP006421 | CACGTGAGCTTGAGGAAACA | GTGAAGTGTCCGATCGGTTT | Coding | TTCACAATGGCCATCTGGATAG | 2L | 31693780
 |  |  |  |  | Coding | CTGACCACCGAGAGGAC | 2L | 31693882
IRSP2 | Effector | AGAP000603 | AGTTTCCGCACAGACGAGAT | TTCGACGCAATACGAAATCA | Coding | CATCTACTGCGCGAGTATCG | X | 10719721
 |  |  |  |  | Coding | CCTCATCGGCCATCACG | X | 10719656
IRSP3 | Effector | AGAP001508 | TTCTTTCCCACACCACCTTC | AGGCGAATTTCTCAAAAGCA | Coding | CTTCGGCGGATCGGG | 2R | 5710532
 |  |  |  |  | Coding | ATCCCGAGAATCCACCGAA | 2R | 5710448
 |  |  | AACGGTGGGTTGTCACATTT | GGCCAGGCTCTTTGTAACTG | Upstream | GCTGTTTAACCCGCTGACTG | 2R | 5711914
IRSP5 | Effector | AGAP000151 | TCTGTCGTGTGCACAGTTGA | CTGACAAATTGGCTGCACTG | UTR | CTACCTGCTCCAACCACA | X | 2455527
 |  |  |  |  | Coding | CTGGCACCCGAGCC | X | 2455264
LRIM1 | Recognition | AGAP006348 | ACGGTGCAATACACGAGATAAAG # | CCTTAGCGCTTTCTCGATCA # | Coding | ACAACTACGTCCAGGAGCT | 2L | 30330835
 |  |  |  |  | Coding | ATATTGTTGTTCGCTGC | 2L | 30330805
 |  |  | TCGTACCACAATCGACCGTA | CCTCGCCAGTGATTAGCTTC | Upstream | GAAAAGTATTTCGACCCAAACGCT | 2L | 30331459
LRRD5 | Recognition | AGAP007039 | [NAME] | TGCTCTAGCTCCGCTTTCTC | Coding | GGCAATGGGCTGGTGAAT | 2L | 41293273
 |  |  |  |  | Coding | TCCCCGAGCGTGATCG | 2L | 41293315
PGRPLb | Recognition | AGAP001212 | CTTCCAGGATTTCGGTTGAA | CGCGAGGGTACTTGTTGATT | Upstream | TCCTCCATCGAGATCATCACG | 2R | 1592138
 |  |  |  |  | Upstream | CACTGTTTGCGGTTACGGTAG | 2R | 1591782
PGRPS1 | Recognition | AGAP000536 | GGCTTTGCGCTTGAAGATAC # | CGGTCTGGTGGTAGGTCTGT # | Coding | GTATGTTTGCCACCATCTCCTT | X | 9623097
 |  |  |  |  | Coding | TAGGTGACGTTCTTCGACTTG | X | 9623191
 |  |  | AGAGAAGATGCGTTGCAGGT | TTTCGAACAACGGTCTACCC | UTR | AGAGTCACTCTGAGCACAAATCAA | X | 9623410
PPO2 | Effector | AGAP006258 | TGCGCAATCTGACCAACTAC # | CGACTCATTGTTCACCTCCA # | Coding | CGTCCAGCATGATGCGGTT | 2L | 28704413
 |  |  |  |  | Coding | CCATCACGCCGTAATCCTC | 2L | 28704257
PPO3 | Effector | AGAP004975 | CCAACGTTCTACCCAAAGGA # | AATCAACTGCTGGTGCATGT # | Coding | CCGCTTCGGAAACGATGC | 2L | 7443893
PPO9 | Effector | AGAP004978 | CCCGAACGCTATCAACGTAT # | TCAGCAGCTTCGGGAAGTAT # | Coding | ACCGTGGCGTGGTACA | 2L | 7457667
[NAME] | Signal Transduction | AGAP009515 | CTCCAACCAGTACCAGCTGC # | TGTCGCTAAGAGAGCCTTTATTG # | Coding | GCCTACACCACACTCGG | 3R | 35055543
 |  |  |  |  | Coding | GCTGGACCCAACCGTT | 3R | 35055426
REL2 | Signal Transduction | AGAP006747 | GGTCGCACCTATGCCAGTGC ^ | ACACCCTCCGATGGTTCAGC ^ | Coding | CGCCGGCACGATGAACTA | 2L | 37737821
 |  |  |  |  | UTR | CAAACGCTGAAATGGGGACA | 2L | 37737570
SCRBQ2 | Recognition | AGAP010133 | TGGATCGTCGAACTATGACAAC # | AAATGTCCGATGGGAAGAGTG # | Coding | CGTACTGTTAGCGTTCCAGA | 3R | 49293744
 |  |  |  |  | Coding | GCTTAGTACCGTTCTTCGTCTT | 3R | 49293662
SpSNAKElike | Modulation | AGAP012946 | ACGCTAATACCGCTCACGAT | CCCCACACGTTGTCCTCTAT | Coding | GGCATCCGAACTACTCGAAC | 2R | 40693588
 |  |  |  |  | Coding | CACAAAGTCCTGCTCATACGG | 2R | 40693950
 |  |  |  |  | Coding | GAGAACGGAAACCAATGGGA | 2R | 40693407
 |  |  | TTAGCCAGGAGCGAACTGAT | TTTGGCATTGTACGTTGCAT | Upstream | [NAME] | 2R | 40688798
 |  |  |  |  | Upstream | AATCCCATGTGTCGGTCCA | 2R | 40688481
SPONDIN fragment | Extracellular Matrix | AGAP011765 | GACCGGAAGCATCACAAGAT | CAACACTGATGTGGGGACAC | Coding | GAGCGTATGCACCGCAT | 3L | 33008007
 |  |  |  |  | Coding | CGGCGACGGTCGATGAG | 3L | 33008425
SpPPOactivate | Modulation | AGAP004638 | CCAACCGATAGTAGCCCGTA | AGTGTTAGAGCACGCCCAGT | Upstream | AATCACTTGATATTAGAGTGGCA | 2R | 58805511
 |  |  |  |  | Upstream | GAGACAAATTTGGATGCGTAACGT | 2R | 58805968
SPZ4 | Modulation | AGAP007866 | CACATATCGGTGCTGAAGGAG # | GAGATCTTGTCGGCGGTAGAC # | Coding | CTCATTCAGCGGGATCTCATT | 3R | 2370169
SRPN11 | Modulation | AGAP001377 | CTCCTGTCAACGATTTAAAGGC # | ATGGTTTCGGAAGCAAGTCTT # | Coding | AGACCCGCATCGCCT | 2R | 4018732
SRPN14 | Modulation | AGAP007692 | TTCAGCCTCAGCCTGTACAAG # | ATAATCCACAGGGCCGAATC # | Coding | CGATCGAGTACAGCATCGC | 2L | 49085437
STAT2 | Signal Transduction | AGAP000099 | GAGAAGGCGTTCAAAACGAA # | GTGTTCGGGAAGCTGTTCAT # | Intron | [NAME] | X | 1611894
 |  |  |  |  | Intron | CCGCAAACAAAACGTTTCAGATTCG | X | 1611919
TEP1 | Recognition | AGAP010815 | CGTTACGTTACCGGTAGCTTTC # | TTCTGCTTGTCCACTTCGTACA # | Coding | GACTACACCGTTCAACTGAAGTA | 3L | 11202849
 |  |  |  |  | Coding | GTTCTGTTTCTCCAGGTCTAGTT | 3L | 11202674
 |  |  | GGTTAAGGCATTTGCTGCAT | CGGTCAGTTTGCATCCCTAT | Upstream | CAGTGAGCCAAAGAACTTACTATG | 3L | 11207232
 |  |  |  |  | Upstream | GCCACTGGAATCGGTATTTCT | 3L | 11207077
TEP4 | Recognition | AGAP010812 | ACCGCGGCAAAGTACATATC # | GTTTGCGTTGGTTACCGATT # | Coding | CGTCTCATCCACACCCT | 3L | 11006648
TEP14 |  | AGAP008368 | CCTTACTCTTCCTCCAGACAACG # | TTCGTGATTGATAGCGTTTCG # | Coding | ACGAGTGCGGTGGTGT | 3R | 10084406
 |  |  |  |  | Coding | AGAAAGCTGCTGGTAGCC | 3R | 10084487
[NAME] | Recognition | AGAP008364 | CGACCATACAGAACCTGGACTC # | GAATCACTGTCGGTCGTTGC # | Coding | CCCGCCTCCATGAACTT | 3R | 10063388
 |  |  |  |  | Coding | TGTCGGTCGTTGCCTTCG | 3R | 10062910
TOLL10 | Signal Transduction | [NAME] | ACGCGTCCACGATCTATCTG # | GCACATAGCCACCACCAATC # | Coding | TCGAGAACAACTACATCAACGA | 3L | 18558100
 |  |  |  |  | Coding | CCACCGATTGCCGTCCAA | 3L | 18558304
 |  |  |  |  | Coding | CACTTCGCCCGCCTC | 3L | 18558484
[NAME] | Signal Transduction | AGAP011186 | GCGACCGACATCTATCTGGA # | CATGATCGTCAGCACCAAAC # | Coding | GGGCGAGTTCCAGTGTG | 3L | 18356896
 |  |  |  |  | Coding | CGATTTCTGGTAATAGAACGACCT | 3L | 18356615
 |  |  |  |  | Coding | CCTTCACCACGTCCGG | 3L | 18356912
 |  |  |  |  | Coding | CCGCAAACGTCTTGTTGTTGAG | 3L | 18356462
[NAME] | Signal Transduction | AGAP012387 | CCTCTCGATCCTCTGCAATG # | TGCAGCTGCTCTAGTTTGGAG # | Coding | CAGATCGCCCAACCCG | 3L | 41490803
Transferrin | Iron Transport | AGAP000376 | CATTCCTACGGGCAGTAAGC | GAAGTACTTGCGCACGTTGA | Coding | GCGGCAGCTTCAGCAC | X | 6870354