Spreadsheet: 10ea4984-edca-4714-a87d-4fa9e7ebae0e
Sheet: Sheet0

Table S1. Differentially expressed genes between [NAME] knockdown (shRNA 15839, 15840 and 15841) cells and control cells (vector and nontarget control)
p-value | [NAME] ([NAME] knockdown/control) | ID | Symbol | [NAME] | Location | Type(s) | Molecular Function
2.39e-05 | 1.056 | 203505_at | ABCA1 | ATP-binding cassette, sub-family A (ABC1), member 1 | [NAME] | transporter
0.00236 | 0.682 | 209765_at | ADAM19 | ADAM metallopeptidase domain 19 | [NAME] | peptidase | Cell movement
0.00197 | 0.757 | 212992_at | AHNAK2 | AHNAK nucleoprotein 2 | unknown | other
0.00073 | -1.018 | 206385_s_at | ANK3 | ankyrin 3, node of [NAME] (ankyrin G) | [NAME] | other
0.00139 | 0.848 | 201012_at | ANXA1 | annexin A1 | [NAME] | other | cell proliferation and movement
0.00108 | 0.692 | 1559433_at | APCDD1L-AS1 | APCDD1L antisense RNA 1 | unknown | other
2.3e-05 | -0.916 | 232630_at | APIP | APAF1 interacting protein | Cytoplasm | enzyme
0.000208 | -0.949 | 207262_at | APOF | apolipoprotein F | Extracellular Space | transporter
0.000429 | 0.958 | 1557285_at | AREG/AREGB | amphiregulin | Extracellular Space | growth factor | cell proliferation and movement
0.000385 | 1.2 | 202208_s_at | ARL4C | ADP-ribosylation factor-like 4C | Nucleus | enzyme
9.15e-05 | 0.889 | 224797_at | ARRDC3 | arrestin domain containing 3 | [NAME] | other | cell proliferation and movement
0.00154 | -1.405 | 213745_at | ATRNL1 | attractin-like 1 | unknown | other
0.000183 | -0.719 | 241031_at | C2CD4A | C2 calcium-dependent domain containing 4A | unknown | other
7.96e-05 | -0.877 | 234996_at | CALCRL | calcitonin receptor-like | [NAME] | G-protein coupled receptor | cell proliferation and movement
0.000139 | 0.737 | 201617_x_at | CALD1 | caldesmon 1 | Cytoplasm | other
0.00166 | -0.718 | 237160_at | CCDC83 | coiled-coil domain containing 83 | unknown | other
0.000851 | 1.064 | 200951_s_at | CCND2 | cyclin D2 | Nucleus | other | cell proliferation
0.000272 | 0.771 | 217523_at | CD44 | CD44 molecule (Indian blood group) | [NAME] | enzyme | cell proliferation and movement
0.000403 | 0.745 | 209286_at | [NAME] | CDC42 effector protein (Rho GTPase binding) 3 | Cytoplasm | other
0.000203 | 0.846 | 218451_at | CDCP1 | CUB domain containing protein 1 | [NAME] | other | cell proliferation and movement
0.000161 | 0.891 | 226350_at | CHML | choroideremia-like (Rab escort protein 2) | Cytoplasm | enzyme
0.000944 | 0.738 | 226372_at | CHST11 | carbohydrate (chondroitin 4) sulfotransferase 11 | Cytoplasm | enzyme | cell proliferation
0.000996 | -0.678 | 1561105_at | CLDN11 | claudin 11 | [NAME] | other | cell proliferation and movement
0.00162 | -1.116 | 231766_s_at | COL12A1 | collagen, type XII, alpha 1 | Extracellular Space | other
0.00054 | 1.975 | 202311_s_at | COL1A1 | collagen, type I, alpha 1 | Extracellular Space | other | cell proliferation and movement
0.000341 | 0.721 | 213428_s_at | COL6A1 | collagen, type VI, alpha 1 | Extracellular Space | other | cell proliferation
0.00256 | 0.745 | 226237_at | COL8A1 | collagen, type VIII, alpha 1 | Extracellular Space | other | cell proliferation
0.00388 | 1.361 | 221541_at | CRISPLD2 | cysteine-rich secretory protein LCCL domain containing 2 | Cytoplasm | other
0.000323 | -0.758 | 209618_at | CTNND2 | catenin (cadherin-associated protein), delta 2 | [NAME] | other | cell proliferation and movement
0.0002 | 0.705 | 231234_at | CTSC | cathepsin C | Cytoplasm | peptidase | cell proliferation and movement
0.000238 | 0.801 | 226609_at | DCBLD1 | discoidin, CUB and LCCL domain containing 1 | Extracellular Space | other
0.00236 | -1.037 | 208386_x_at | DMC1 | DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) | Nucleus | enzyme
0.00033 | -1.106 | 214844_s_at | DOK5 | docking protein 5 | [NAME] | other
0.00031 | 0.848 | 200606_at | DSP | [NAME] | [NAME] | other | cell proliferation
0.00489 | 0.732 | 227449_at | EPHA4 | EPH receptor A4 | [NAME] | [NAME] | cell movement
0.00346 | 0.825 | 232164_s_at | [NAME] | epiplakin 1 | Cytoplasm | other
7.95e-05 | 0.771 | 201328_at | ETS2 | v-ets erythroblastosis virus E26 oncogene homolog 2 (avian) | Nucleus | transcription regulator | cell proliferation
0.00207 | 0.737 | 239178_at | FGF9 | fibroblast growth factor 9 (glia-activating factor) | Extracellular Space | growth factor | cell proliferation and movement
0.00435 | 0.725 | 202949_s_at | FHL2 | four and a half LIM domains 2 | Nucleus | transcription regulator | cell proliferation and movement
0.000817 | -0.733 | 230964_at | FREM2 | FRAS1 related extracellular matrix protein 2 | Extracellular Space | other
0.00021 | 1.316 | 240028_at | FSIP2 | fibrous sheath interacting protein 2 | Cytoplasm | other
0.00275 | -0.673 | 224379_at | FTHL17 | ferritin, heavy polypeptide-like 17 | unknown | other
0.00331 | 0.807 | 219764_at | FZD10 | frizzled family receptor 10 | [NAME] | G-protein coupled receptor
0.00199 | 1.865 | 213524_s_at | G0S2 | G0/G1switch 2 | Cytoplasm | other | cell proliferation
1.14e-06 | 2.43 | 218469_at | GREM1 | gremlin 1 | Extracellular Space | other | cell proliferation and movement
0.000138 | -0.977 | 208181_at | HIST1H4A (includes others) | histone cluster 1, H4a | Nucleus | other
0.000168 | 0.771 | 239153_at | HOTAIR | HOX transcript antisense RNA | unknown | other
0.00143 | 1.054 | 219985_at | HS3ST3A1 | heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 | Cytoplasm | enzyme
1.98e-05 | 2.063 | 227361_at | HS3ST3B1 | heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 | Cytoplasm | enzyme
0.00374 | 0.758 | 1552766_at | HS6ST2 | heparan sulfate 6-O-sulfotransferase 2 | [NAME] | enzyme | cell proliferation
0.00236 | -0.708 | 1555935_s_at | HUNK | hormonally up-regulated Neu-associated kinase | Cytoplasm | [NAME] | cell proliferation
0.000286 | 0.914 | 201656_at | ITGA6 | integrin, alpha 6 | [NAME] | other | cell proliferation and movement
0.00388 | -0.794 | 226534_at | KITLG | KIT ligand | Extracellular Space | growth factor | cell proliferation and movement
0.000941 | 0.943 | 237123_x_at | KLHL9 | kelch-like 9 (Drosophila) | Cytoplasm | other
0.000346 | -0.91 | 230865_at | LIX1 | Lix1 homolog (chicken) | unknown | other
0.000143 | -0.695 | 230184_at | LOC100506421 | uncharacterized LOC100506421 | unknown | other
0.00437 | 1.061 | 1556936_at | LOC100506834 | uncharacterized LOC100506834 | unknown | other
0.000177 | 0.784 | 1556704_s_at | LOC286297 | uncharacterized LOC286297 | unknown | other
0.0046 | 0.943 | 227889_at | LPCAT2 | lysophosphatidylcholine acyltransferase 2 | Cytoplasm | enzyme
0.00106 | -0.671 | 202626_s_at | LYN | v-yes-1 Yamaguchi sarcoma viral related oncogene homolog | Cytoplasm | [NAME] | cell proliferation and movement
0.000702 | 1.375 | 212909_at | LYPD1 | LY6/PLAUR domain containing 1 | [NAME] | G-protein coupled receptor
7.06e-05 | 0.991 | 226084_at | MAP1B | microtubule-associated protein 1B | Cytoplasm | other | cell movement
0.00289 | -0.704 | 1553743_at | METTL21A | methyltransferase like 21A | unknown | other
0.0027 | 0.67 | 205932_s_at | MSX1 | [NAME] 1 | Nucleus | transcription regulator | cell proliferation
0.000315 | 0.783 | 212364_at | MYO1B | myosin IB | Cytoplasm | other
0.0035 | 0.857 | 1557998_at | NAALADL2 | N-acetylated alpha-linked acidic dipeptidase-like 2 | unknown | other
9.91e-05 | 1.011 | 236471_at | NFE2L3 | nuclear factor (erythroid-derived 2)-like 3 | Nucleus | transcription regulator
9.32e-05 | 1.094 | 230668_at | NKAIN4 | Na+/K+ transporting ATPase interacting 4 | Extracellular Space | other
0.000132 | 0.97 | 201310_s_at | NREP | neuronal regeneration related protein homolog (rat) | Cytoplasm | other | cell proliferation and movement
2.23e-05 | -0.939 | 210683_at | NRTN | neurturin | Extracellular Space | growth factor | cell movement
0.000474 | -0.667 | 206228_at | [NAME] | paired box 2 | Nucleus | transcription regulator | cell proliferation and movement
0.00205 | 0.79 | 241833_at | [NAME] | peroxisomal biogenesis factor 5-like | Cytoplasm | ion channel
0.00298 | -1.067 | 225380_at | [NAME] | protein kinase domain containing, cytoplasmic homolog (mouse) | Cytoplasm | [NAME]
0.000532 | 0.702 | 235230_at | [NAME] | phosphatidylinositol-specific phospholipase C, X domain containing 2 | unknown | enzyme
0.000925 | 0.94 | 214981_at | POSTN | periostin, osteoblast specific factor | Extracellular Space | other | cell proliferation and movement
3.63e-05 | 0.993 | 227006_at | PPP1R14A | protein phosphatase 1, regulatory (inhibitor) subunit 14A | Cytoplasm | other
0.00105 | 1.027 | 202458_at | PRSS23 | protease, serine, 23 | Extracellular Space | peptidase
0.00215 | -0.67 | 238695_s_at | RAB39B | RAB39B, member RAS oncogene family | [NAME] | enzyme
0.00202 | 0.76 | 202976_s_at | RHOBTB3 | Rho-related BTB domain containing 3 | unknown | enzyme
1.62e-05 | 1.283 | 232060_at | ROR1 | receptor [NAME]-like orphan receptor 1 | [NAME] | [NAME] | cell proliferation
0.00331 | -0.704 | 241185_at | SAE1 | SUMO1 activating enzyme subunit 1 | Cytoplasm | enzyme | cell proliferation
0.00139 | 0.859 | 229273_at | SALL1 | sal-like 1 (Drosophila) | Nucleus | transcription regulator
0.00393 | 1.069 | 1554920_at | SCEL | sciellin | Cytoplasm | other
0.000808 | -0.868 | 1552367_a_at | SCIN | scinderin | Cytoplasm | other | cell proliferation
0.00247 | 0.702 | 212314_at | SEL1L3 | sel-1 suppressor of lin-12-like 3 (C. elegans) | unknown | other
0.00303 | 0.699 | 1554168_a_at | SH3KBP1 | SH3-domain kinase binding protein 1 | Cytoplasm | other | cell proliferation and movement
0.000114 | 1.006 | 230493_at | SHISA2 | shisa homolog 2 ([NAME] laevis) | unknown | other
0.000239 | 0.7 | 228347_at | SIX1 | SIX homeobox 1 | Nucleus | transcription regulator | cell proliferation and movement
0.00106 | 0.716 | 230494_at | SLC20A1 | solute carrier family 20 (phosphate transporter), member 1 | [NAME] | transporter | cell proliferation
0.00497 | 0.71 | 235299_at | SLC41A2 | solute carrier family 41, member 2 | [NAME] | transporter
0.000413 | -0.743 | 220931_at | SMIM2 | small integral membrane protein 2 | unknown | other
0.00297 | 0.763 | 203217_s_at | ST3GAL5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 5 | Cytoplasm | enzyme | cell movement
0.00013 | 1.447 | 203439_s_at | STC2 | stanniocalcin 2 | Extracellular Space | other | cell proliferation
0.000568 | -0.704 | 215301_at | SYCE1L | synaptonemal complex central element protein 1-like | unknown | other
0.000284 | 1.706 | 232068_s_at | TLR4 | toll-like receptor 4 | [NAME] | transmembrane receptor | cell proliferation and movement
2.75e-05 | -1.007 | 204932_at | TNFRSF11B | tumor necrosis factor receptor superfamily, member 11b | [NAME] | transmembrane receptor | cell proliferation and movement
0.000391 | -0.878 | 230625_s_at | TSPAN12 | tetraspanin 12 | [NAME] | transmembrane receptor
0.00089 | 0.705 | 223279_s_at | UACA | uveal autoantigen with coiled-coil domains and ankyrin repeats | Cytoplasm | other
0.000224 | 1.375 | 219478_at | WFDC1 | WAP four-disulfide core domain 1 | Extracellular Space | other | cell proliferation
0.000203 | 0.724 | 219836_at | ZBED2 | zinc finger, BED-type containing 2 | unknown | other