Spreadsheet: a09063ca-8ca9-48ec-85e4-61cb26afa3e0
Sheet: Sheet1

Table S6 - indirect FFLs in the TargetScan dataset. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4
Here we list only the pairs which constitue an indirect FFL, and also mention if they also constitute another type of FFL too. In the last column we provide all the data about the indirect FFL: the relevant genomic miR cluster of the partner miR, and the details of the mediator TF which has a TFBS in the partner miR's promoter: it's PSSM and RefSeq gene, upstream of which the partner TF has aTFBS.
miR | TF | has a regular FFL | indirect FFL information
miR-28 | V$AHR_Q5 | NO | diamond to cluster191_hsa-mir-28 via NM_002697 ( V$OCT1_01 V$OCT1_02 V$OCT1_03 V$OCT1_04 V$OCT1_05 V$OCT1_06 V$OCT1_07 V$OCT1_B V$OCT1_Q5_01 V$OCT1_Q6 V$OCT_C V$OCT_Q6 )
miR-324-5p | V$AIRE_02 | NO | diamond to cluster103_hsa-mir-324 via NM_006626 ( V$ZID_01 )
miR-503 | V$CDPCR1_01 | [NAME] | diamond to cluster293_hsa-mir-424 via NM_002398 ( V$MEIS1AHOXA9_01 V$MEIS1BHOXA9_02 V$MEIS1_01 )NM_012448 ( [NAME] )
miR-505 | V$CDPCR1_01 | NO | diamond to cluster295_hsa-mir-505 via NM_002398 ( V$MEIS1AHOXA9_01 V$MEIS1BHOXA9_02 V$MEIS1_01 )
miR-93 | V$CDPCR1_01 | NO | diamond to cluster238_hsa-mir-106b via NM_005654 ( V$COUP_01 V$COUP_DR1_Q6 V$DR1_Q3 V$DR4_Q2 )
miR-7 | V$CDP_02 | [NAME] | diamond to cluster92_hsa-mir-7-2 via NM_001674 ( V$ATF3_Q6 V$CREBATF_Q6 ) | diamond to cluster267_hsa-mir-7-1 via NM_005587 ( V$AMEF2_Q6 V$HMEF2_Q6 [NAME] V$MMEF2_Q6 )
miR-15 | V$CDX2_Q5 | NO | diamond to cluster188_hsa-mir-15b via NM_000306 ( V$PIT1_Q6 V$POU1F1_Q6 )
miR-93 | V$E2F_Q3_01 | [NAME] | diamond to cluster238_hsa-mir-106b via NM_021005 ( V$ARP1_01 V$COUP_DR1_Q6 V$DR1_Q3 V$DR4_Q2 )
miR-135 | V$E2F_Q4 | NO | diamond to cluster20_hsa-mir-135b via NM_005585 ( V$SMAD_Q6_01 )
miR-28 | V$FOXO4_02 | NO | diamond to cluster191_hsa-mir-28 via NM_002229 ( [NAME] )
miR-129 | [NAME] | NO | diamond to cluster40_hsa-mir-129-2 via NM_001880 ( V$CREBATF_Q6 [NAME] )NM_004599 ( V$SREBP_Q3 )NM_004852 ( V$HNF6_Q6 )NM_005920 ( [NAME] )
miR-30 | V$HIF1_Q5 | NO | diamond to cluster224_hsa-mir-30a via NM_004496 ( V$HNF3ALPHA_Q6 V$HNF3_Q6 V$HNF3_Q6_01 )
miR-375 | V$HMGIY_Q3 | NO | diamond to cluster149_hsa-mir-375 via NM_004498 ( V$HNF6_Q6 )
miR-505 | V$HNF6_Q6 | [NAME] | diamond to cluster295_hsa-mir-505 via NM_002398 ( V$MEIS1AHOXA9_01 V$MEIS1BHOXA9_02 V$MEIS1_01 )NM_004498 ( V$HNF6_Q6 )NM_004852 ( V$HNF6_Q6 )
miR-19 | V$IRF_Q6 | NO | diamond to cluster70_hsa-mir-17 via NM_000438 ( V$PAX3_01 V$PAX3_B V$PAX_Q6 )NM_007129 ( V$ZIC2_01 ) | diamond to cluster292_hsa-mir-106a via NM_000438 ( V$PAX3_01 V$PAX3_B V$PAX_Q6 )NM_004852 ( V$HNF6_Q6 )NM_005604 ( V$BRN2_01 V$OCT_Q6 [NAME] )
miR-30 | V$IRF_Q6 | mir2TF | diamond to cluster223_hsa-mir-30c-2 via NM_000325 ( V$PITX2_Q2 ) | diamond to cluster224_hsa-mir-30a via NM_005604 ( V$BRN2_01 V$OCT_Q6 [NAME] )
miR-33 | V$NKX25_01 | NO | diamond to cluster104_hsa-mir-33b via NM_005654 ( V$COUP_01 V$COUP_DR1_Q6 V$DR1_Q3 V$DR4_Q2 )
miR-23 | V$NKX25_02 | NO | diamond to cluster129_hsa-mir-23a via NM_003204 ( V$MAF_Q6_01 [NAME] )
miR-135 | V$NRSF_01 | NO | diamond to cluster64_hsa-mir-135a-2 via NM_014564 ( V$LHX3_01 )
miR-153 | V$NRSF_01 | NO | diamond to cluster150_hsa-mir-153-1 via NM_003403 ( V$YY1_01 V$YY1_02 V$YY1_Q6 )NM_014587 ( V$SOX_Q6 )
miR-26 | V$POU3F2_02 | NO | diamond to cluster177_hsa-mir-26a-1 via NM_002955 ( V$RREB1_01 )NM_004852 ( V$HNF6_Q6 )
miR-10 | V$POU6F1_01 | [NAME] | diamond to cluster111_hsa-mir-10a via NM_003106 ( V$SOX_Q6 )
miR-186 | V$POU6F1_01 | NO | diamond to cluster7_hsa-mir-186 via NM_002142 ( [NAME] )
miR-218 | V$POU6F1_01 | NO | diamond to cluster196_hsa-mir-218-1 via NM_004496 ( V$HNF3ALPHA_Q6 V$HNF3_Q6 V$HNF3_Q6_01 ) | diamond to cluster216_hsa-mir-218-2 via NM_004852 ( V$HNF6_Q6 )
miR-33 | V$S8_01 | NO | diamond to cluster104_hsa-mir-33b via NM_005654 ( V$COUP_01 V$COUP_DR1_Q6 V$DR1_Q3 V$DR4_Q2 )
miR-22 | V$SRF_Q4 | mir2TF | diamond to cluster100_hsa-mir-22 via NM_001964 ( [NAME] V$EGR_Q6 V$KROX_Q6 )
miR-19 | V$SRF_Q6 | NO | diamond to cluster292_hsa-mir-106a via NM_001965 ( V$KROX_Q6 V$NGFIC_01 )
miR-141 | V$TATA_01 | NO | diamond to cluster50_hsa-mir-200c via NM_003131 ( V$SRF_01 V$SRF_C V$SRF_Q4 V$SRF_Q5_01 V$SRF_Q5_02 V$SRF_Q6 )
miR-194 | V$TST1_01 | NO | diamond to cluster43_hsa-mir-194-2 via NM_000278 ( V$PAX2_01 V$PAX_Q6 )
miR-210 | V$ZF5_B | NO | diamond to cluster37_hsa-mir-210 via NM_006237 ( V$OCT_Q6 )