Spreadsheet: 6da431fd-6f84-4c31-b066-ca1732f32f6a
Sheet: S5

Table S5. Allele count frequency distribution by variant type. Average number of variants per line
 |  |  |  |  |  |  |  |  |  | Coding SNP types
[NAME] | All types | SNP | Insertions | Deletions | Complex | Homopolymer | Microsatellite | Tandem duplication | Inversions | Synonymous | Non  synonymous | New stop  codon | Remove  stop codon
1 | 25496.385 | 19373.846 | 1664.0513 | 2996.0769 | 1462.4103 | 1359.8718 | 281.15385 | 220.33333 | 3.6666667 | 1460.641 | 1039.3077 | 10.410256 | 1.3076923
2 | 23137.949 | 17138 | 1789.3846 | 2735.6923 | 1474.8718 | 1466.7692 | 270.82051 | 195.48718 | 3.6923077 | 1491.5385 | 728.71795 | 4.8205128 | 0.87179487
3 | 22581.077 | 16772.462 | 1782.6923 | 2554.8462 | 1471.0769 | 1447.2308 | 245 | 173.38462 | 3.2307692 | 1550.6923 | 633.15385 | 2.9230769 | 0.61538462
4 | 21901.744 | 16362.051 | 1779.5897 | 2302.9744 | 1457.1282 | 1372.5128 | 229.74359 | 164.30769 | 3.1794872 | 1564.1026 | 590.97436 | 1.9487179 | 0.92307692
5 | 21617.308 | 16258.846 | 1731.2821 | 2197.4359 | 1429.7436 | 1357.1795 | 219.61538 | 154.74359 | 3.3333333 | 1642.0513 | 541.15385 | 2.4358974 | 1.025641
6 | 21338.923 | 16112 | 1682.9231 | 2098.7692 | 1445.2308 | 1309.5385 | 200.61538 | 149.84615 | 2.7692308 | 1661.8462 | 530.46154 | 1.6923077 | 0.61538462
7 | 21612.949 | 16433.667 | 1693.1026 | 2045.4359 | 1440.7436 | 1286.7436 | 182 | 141.25641 | 3.2307692 | 1720.9231 | 496.28205 | 3.7692308 | 0.35897436
8 | 21652.513 | 16568.821 | 1703.7949 | 1965.1282 | 1414.7692 | 1240.4103 | 194.87179 | 141.53846 | 3.0769231 | 1811.2821 | 502.97436 | 1.6410256 | 0.41025641
9 | 21453.923 | 16526.769 | 1635.6923 | 1882.8462 | 1408.6154 | 1213.3846 | 177.92308 | 134.53846 | 3 | 1826.0769 | 505.15385 | 1.1538462 | 0
10 | 21478.462 | 16647.949 | 1612.8205 | 1819.7436 | 1397.9487 | 1183.5897 | 162.30769 | 134.87179 | 4.1025641 | 1840.2564 | 507.4359 | 1.7948718 | 0
11 | 21613.59 | 16828.872 | 1609.1026 | 1777.4872 | 1398.1282 | 1173.6154 | 161.05128 | 119.30769 | 2.8205128 | 1828.8205 | 499.51282 | 1.6923077 | 0.28205128
12 | 21553.231 | 16885.231 | 1605.8462 | 1699.3846 | 1362.7692 | 1129.5385 | 150.15385 | 113.23077 | 2.1538462 | 1907.3846 | 519.38462 | 2.1538462 | 0
13 | 21479.667 | 16893.667 | 1572.6667 | 1700 | 1313.3333 | 1110 | 145.66667 | 131.66667 | 1.3333333 | 1943.6667 | 502.66667 | 3.6666667 | 1
14 | 21537.385 | 17071.385 | 1554 | 1596.359 | 1315.641 | 1069.0256 | 144.66667 | 115.23077 | 4.3076923 | 1932.7179 | 504.71795 | 2.1538462 | 0.71794872
15 | 21499.615 | 17133.077 | 1517.6923 | 1556.1538 | 1292.6923 | 1079.2308 | 133.07692 | 122.69231 | 1.9230769 | 1975 | 488.46154 | 0.38461538 | 1.5384615
16 | 21514.256 | 17170.872 | 1518.7692 | 1532.7179 | 1291.8974 | 1022.359 | 130.87179 | 117.33333 | 2.0512821 | 1954.4615 | 499.28205 | 1.2307692 | 0.41025641
17 | 21278.769 | 17068 | 1485.1026 | 1440.641 | 1285.0256 | 961.58974 | 127.71795 | 105.05128 | 2.1794872 | 1940.1795 | 493.4359 | 2.6153846 | 0
18 | 21000.462 | 16991.538 | 1425.6923 | 1407.2308 | 1176 | 969.23077 | 133.84615 | 106.61538 | 1.8461538 | 1933.8462 | 471.69231 | 1.3846154 | 0
19 | 20705.128 | 16811.59 | 1380.1795 | 1321.7179 | 1191.641 | 914.4359 | 113.51282 | 89.641026 | 0.48717949 | 1986.2308 | 502.76923 | 1.9487179 | 0.48717949
20 | 20716.41 | 16909.231 | 1371.7949 | 1317.4359 | 1117.9487 | 880.51282 | 109.23077 | 91.282051 | 1.025641 | 1956.4103 | 522.5641 | 2.5641026 | 0.51282051
21 | 20445.923 | 16822.077 | 1366.6154 | 1213.1538 | 1044.0769 | 850.23077 | 116.30769 | 87.230769 | 3.7692308 | 2011.6923 | 493.76923 | 2.1538462 | 0.53846154
22 | 20086 | 16576.718 | 1328.4615 | 1171.0769 | 1009.7436 | 869.28205 | 108.30769 | 78.974359 | 2.8205128 | 1989.0256 | 469.33333 | 0.56410256 | 0
23 | 19786.487 | 16418.462 | 1296.8462 | 1055.641 | 1015.5385 | 769.61538 | 104.38462 | 84.923077 | 2.3589744 | 1999.2308 | 480.64103 | 0.58974359 | 0.58974359
24 | 19676.308 | 16389.538 | 1276.9231 | 1035.6923 | 974.15385 | 750.76923 | 80.615385 | 81.230769 | 3.6923077 | 1977.2308 | 490.46154 | 1.2307692 | 2.4615385
25 | 19126.923 | 15796.154 | 1255.1282 | 1058.3333 | 1017.3077 | 789.74359 | 80.128205 | 80.128205 | 4.4871795 | 1880.1282 | 477.5641 | 0.64102564 | 0
26 | 18710 | 15676.667 | 1210 | 944.66667 | 878.66667 | 701.33333 | 83.333333 | 76 | 1.3333333 | 1845.3333 | 459.33333 | 1.3333333 | 1.3333333
27 | 18137.769 | 15245.308 | 1104.2308 | 913.15385 | 875.07692 | 638.30769 | 72 | 67.153846 | 6.2307692 | 1823.5385 | 426.46154 | 0.69230769 | 0
28 | 17804.41 | 15030.256 | 1097.7436 | 860.10256 | 816.30769 | 621.02564 | 58.871795 | 73.948718 | 0.71794872 | 1772.6154 | 444.41026 | 4.3076923 | 0
29 | 17273.59 | 14609.308 | 1094.5641 | 801.58974 | 768.12821 | 622.38462 | 55.769231 | 61.717949 | 0.74358974 | 1669.359 | 461.02564 | 0.74358974 | 0.74358974
30 | 16918.462 | 14406.154 | 990 | 756.92308 | 765.38462 | 542.30769 | 60 | 61.538462 | 1.5384615 | 1719.2308 | 443.07692 | 3.0769231 | 0
31 | 16414.103 | 14038.231 | 999.94872 | 689.94872 | 685.97436 | 499.97436 | 35.769231 | 50.076923 | 0.79487179 | 1582.5897 | 430.02564 | 3.1794872 | 0.79487179
32 | 15734.154 | 13539.282 | 959.17949 | 621.12821 | 614.5641 | 497.23077 | 45.948718 | 53.333333 | 0.82051282 | 1468.7179 | 447.17949 | 0 | 0
33 | 15070.846 | 12978.308 | 915.53846 | 609.23077 | 567.76923 | 474.69231 | 47.384615 | 49.076923 | 0.84615385 | 1368.2308 | 429 | 0 | 0.84615385
34 | 15132.615 | 13160.615 | 900.5641 | 522.20513 | 549.23077 | 412.35897 | 38.358974 | 33.128205 | 0.87179487 | 1425.3846 | 461.17949 | 1.7435897 | 0.87179487
35 | 14266.538 | 12409.744 | 818.46154 | 518.71795 | 519.61538 | 404.74359 | 29.615385 | 42.179487 | 5.3846154 | 1313.8462 | 401.15385 | 0.8974359 | 0.8974359
36 | 14006.769 | 12220.615 | 878.76923 | 434.76923 | 472.61538 | 350.76923 | 35.076923 | 41.538462 | 0 | 1268.3077 | 483.69231 | 0 | 2.7692308
37 | 14177.641 | 12462.359 | 833.92308 | 423.12821 | 458.23077 | 314.02564 | 18.974359 | 31.307692 | 3.7948718 | 1191.5897 | 495.23077 | 0 | 0.94871795
38 | 15115.231 | 13305.846 | 911.02564 | 424.82051 | 473.53846 | 330.30769 | 10.717949 | 21.435897 | 2.9230769 | 1143.8974 | 662.5641 | 0 | 2.9230769
39 | 18363 | 16214 | 873 | 452 | 824 | 255 | 7 | 18 | 1 | 1177 | 934 | 2 | 6
Total
% singletons