Spreadsheet: 11216911-cc32-4d0e-a66d-982c106826d9
Sheet: Sup Table 1

Supplemental Table 1.
Collection | Strain  Designation | Source | Country | Pool assignment for SNP discovery | Sorbitol fermenting | MUG activity | tir 255 allelea | Pulsenet USA PFGE pattern xba1b | Pulsenet USA PFGE pattern bln1b | Code for combined xba1 and bln1 PFGE patterns | Shiga toxin-encoding bacteriophage insertion site genotypes | Phage genotype codec | Polymorphism-derived genotypesd | [NAME] | Shiga toxin-encoding bacteriophage insertion site genotype reference
USMARC | L47-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NEe | NE | NE | 5 | 011000 | 100 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 2-2-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 122 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 2-6-2 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 122 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 2-3 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 132 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | Show NE 175-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | Show NE 184-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | Show NE 235-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | Show KS 470-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 98 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS CO 81-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 103 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS TX 313-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 143 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS TX 426-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 115 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS TX 754-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 106 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS TX 781-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 126 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS NE 1040-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 101 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS NE 1183-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS NE 1339-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 107 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | SS NE 1400-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | WS NE 21-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | WS NE 48-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | WS NE 274-2 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | WS NE 340-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 137 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | WS TX 886-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 111 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | CO 50-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 103 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | CO 147-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 131 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 265-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 134 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 376-2 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 144 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 723-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 129 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 864-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 106 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 972-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 97 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1370-3 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 143 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | KS 368-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 105 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | KS 546 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 107 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | N5D2-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 135 | Whittam. 1998 | This study
USMARC | N2B24-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 97 | [NAME]. 2006 | This study
USMARC | YB14-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 136 | [NAME]. 2006 | This study
USMARC | BB24-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 128 | [NAME]. 2006 | This study
USMARC | 19B18-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 130 | [NAME]. 2006 | This study
USMARC | BB27-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 133 | [NAME]. 2006 | This study
USMARC | HB20-3 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 131 | [NAME]. 2006 | This study
USMARC | B11-3 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 125 | [NAME]. 2006 | This study
USMARC | SF26 94-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 109 | [NAME]. 2006 | This study
USMARC | MB9-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 102 | [NAME]. 2006 | This study
USMARC | MB32-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 110 | [NAME]. 2006 | This study
USMARC | 12B5-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 114 | [NAME]. 2006 | This study
USMARC | SF18 28-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 97 | [NAME]. 2006 | This study
USMARC | TB21-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 113 | [NAME]. 2006 | This study
USMARC | N2B53-1 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 124 | [NAME]. 2006 | This study
USMARC | N8B7-2 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | 117 | [NAME]. 2006 | This study
USMARC | HB6F-2B | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
USMARC | 05-1047 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
USMARC | 05-1093 | Bovine | USA | Bovine, tir A | [NAME] | [NAME] | A | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
USMARC | Ex1-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 4 | 010011 | 43 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 30-3 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 158 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 23-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 4 | 010011 | 19 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 38-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 2 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 105-4-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 154 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 107-2-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 2 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 120-4-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 170 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 5-11-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 56 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 106-2-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 4 | 010011 | 19 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 107-1-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 58 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 112-5-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 160 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 207-8-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 22 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 209-1-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 86 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 211-2-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 7 | 111011 | 33 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 214-1-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | Gim1-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 81 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 3-5-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 149 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | 4-3 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 150 | Elder et [NAME]. 2000 | Besser et al. 2007
USMARC | NE 122-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 161 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 5-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 25 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 92-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 84 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 81-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 82 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | KS 411-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 152 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | KS 448-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 172 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 291-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 87 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 349-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 6 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 931-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 85 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1060-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 25 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1092-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 6 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1169-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 46 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TX 909-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 85 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | CO 1185-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 85 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | KS 1534-4A | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 6 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | LSU 56 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 150 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | LSU 58 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 11 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | CO 713-5 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 53 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1127-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 46 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | NE 1270-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 170 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | [NAME] | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 42 | [NAME] et al. 2004 | Besser et al. 2007
USMARC | TB19-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 85 | [NAME]. 2006 | This study
USMARC | MB40-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 8 | [NAME]. 2006 | This study
USMARC | MB41-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 66 | [NAME]. 2006 | This study
USMARC | 1B8-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 5 | [NAME]. 2006 | This study
USMARC | 13B3-1 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 2 | [NAME]. 2006 | This study
USMARC | 17B6-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 1 | [NAME]. 2006 | This study
USMARC | FB12-2 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 54 | [NAME]. 2006 | This study
USMARC | 05-115 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 163 | [NAME]. 2006 | This study
USMARC | 05-955 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | 36 | [NAME]. 2006 | This study
USMARC | 05-1043 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
USMARC | 05-1082 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
USMARC | 05-1091 | Bovine | USA | Bovine, tir T | [NAME] | [NAME] | T | NE | NE | NE | NE | NE | NE | [NAME]. 2006 | This study
CDC | G5244 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 28 | ESf | Besser et al. 2007
CDC | [NAME]g | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 155 | ES | Besser et al. 2007
CDC | H6437 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 155 | ES | Besser et al. 2007
CDC | F5606 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 159 | ES | Besser et al. 2007
CDC | F5733 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 155 | ES | Besser et al. 2007
CDC | H6039 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 153 | ES | Besser et al. 2007
CDC | G7560 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 151 | ES | Besser et al. 2007
CDC | G5307 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 154 | ES | Besser et al. 2007
CDC | F7349h | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 47 | ES | Besser et al. 2007
CDC | F7351 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | ES | Besser et al. 2007
CDC | F7353 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | ES | Besser et al. 2007
CDC | H0706 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 20 | ES | Besser et al. 2007
CDC | F6854g | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | [NAME] | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | F6859 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | G5303 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 62 | ES | Besser et al. 2007
CDC | F7388 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 170 | ES | Besser et al. 2007
CDC | F7382h | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 169 | ES | Besser et al. 2007
CDC | F7383g | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 166 | ES | Besser et al. 2007
CDC | F7384 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 166 | ES | Besser et al. 2007
CDC | F7386 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 165 | ES | Besser et al. 2007
CDC | H1949 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 35 | ES | Besser et al. 2007
CDC | H2014 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 35 | ES | Besser et al. 2007
CDC | F6750 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | [NAME] | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 51 | ES | Besser et al. 2007
CDC | F6749 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | F6751 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | F5638 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | F5627 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 18 | ES | Besser et al. 2007
CDC | F6883 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 8 | 101100 | 22 | ES | Besser et al. 2007
CDC | F6884 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 13 | ES | Besser et al. 2007
CDC | F6891 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 57 | ES | Besser et al. 2007
CDC | F6892 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 22 | ES | Besser et al. 2007
CDC | F6893 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | NE | ES | Besser et al. 2007
CDC | F6913 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | NE | ES | Besser et al. 2007
CDC | G5297 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 23 | ES | Besser et al. 2007
CDC | G5425 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | G5285 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 60 | ES | Besser et al. 2007
CDC | G5295 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 9 | ES | Besser et al. 2007
CDC | G7602 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 30 | ES | Besser et al. 2007
CDC | H0672 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 20 | ES | Besser et al. 2007
CDC | H2498 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 24 | ES | Besser et al. 2007
CDC | H2495 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 13 | ES | Besser et al. 2007
CDC | F4552 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 38 | ES | Besser et al. 2007
CDC | F4586 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 37 | ES | Besser et al. 2007
CDC | F5707 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 155 | ES | Besser et al. 2007
CDC | F6141 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 153 | ES | Besser et al. 2007
CDC | F6569 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 27 | ES | Besser et al. 2007
CDC | F6667 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 90 | ES | Besser et al. 2007
CDC | F6942 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 26 | ES | Besser et al. 2007
CDC | F6953 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | F7345 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | ES | Besser et al. 2007
CDC | F7350 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | ES | Besser et al. 2007
CDC | F8774 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 17 | ES | Besser et al. 2007
CDC | G6063 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 32 | ES | Besser et al. 2007
CDC | [NAME] | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 166 | ES | Besser et al. 2007
CDC | F7508 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 59 | ES | Besser et al. 2007
CDC | F7639 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 164 | ES | Besser et al. 2007
CDC | F6862 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 16 | ES | Besser et al. 2007
CDC | F6856 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | F6861 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | F8778 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 39 | ES | Besser et al. 2007
CDC | F8092 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 52 | ES | Besser et al. 2007
CDC | F8289-D | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 51 | ES | Besser et al. 2007
CDC | F6858 | Human | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 40 | ES | Besser et al. 2007
CDC | [NAME] | Human | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | NDi | ND | 104 | ES | Besser et al. 2007
CDC | F8797 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 170 | ES | Besser et al. 2007
CDC | F6851 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 7 | 111011 | 54 | ES | Besser et al. 2007
CDC | F8799 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 49 | ES | Besser et al. 2007
CDC | F8803 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 157 | ES | Besser et al. 2007
CDC | [NAME] | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 167 | ES | Besser et al. 2007
CDC | F8784 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 14 | ES | Besser et al. 2007
CDC | F8798 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 64 | ES | Besser et al. 2007
CDC | F8801 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 14 | ES | Besser et al. 2007
CDC | F8783 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 32 | ES | Besser et al. 2007
CDC | F8952 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 4 | 010011 | 21 | ES | Besser et al. 2007
CDC | F9019 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 167 | ES | Besser et al. 2007
EHEC 1-4 | TW00116 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 2 | 011111 | 61 | Whittam. 1998 | Besser et al. 2007
EHEC 1-5 | TW00975 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 22 | 101111 | 60 | Whittam. 1998 | Besser et al. 2007
EHEC 1-7 | TW02883 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 162 | Whittam. 1998 | Besser et al. 2007
EHEC 1-2 | TW04863 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 28 | Whittam. 1998 | Besser et al. 2007
EHEC 1-8 | TW05356 | Human | USA | Human, tir T | [NAME] | pos | T | NE | NE | NE | 6 | 111000 | 80 | Whittam. 1998 | Besser et al. 2007
EHEC 1-6 | TW06555 | Human | Germany | Human, tir T | pos | pos | T | NE | NE | NE | 11 | 010000 | 75 | Whittam. 1998 | Besser et al. 2007
EHEC 1-3 | TW07587 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 63 | Whittam. 1998 | Besser et al. 2007
DECA | 4B | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 174 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
DECA | 3E | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 162 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
DECA | 4E | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 13 | 101000 | 69 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
DECA | 3A | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 60 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
DECA | 3C | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 60 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
DECA | 3D | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 60 | National Food Safety and Toxicology Center, Reid, Betting, Whittam,1999 | Besser et al. 2007
RMID | Sakai | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 34 | Hayashi et al. 2001 | Besser et al. 2007
Mandrell | RM 1239 | Human | USA | Human, tir T | [NAME] | [NAME] | T | 2 different assignedj | 2 different assignedj | NE | 3 | 111111 | 37 | [NAME]. 2007 | Besser et al. 2007
Mandrell | RM 6049 | Human | USA | NE | [NAME] | [NAME] | T | EXHX01.0124j | EXHA26.0015j | NE | 1 | 011100 | 167 | [NAME]. 2007 | This study
Mandrell | RM6101 | Pig | USA | NE | [NAME] | [NAME] | NE | EXHX01.0124j | EXHA26.0015j | NE | NE | NE | 167 | [NAME]. 2007 | This study
Mandrell | RM6102 | Water | USA | NE | [NAME] | [NAME] | NE | EXHX01.0124j | EXHA26.0015j | NE | NE | NE | 171 | [NAME]. 2007 | This study
Mandrell | RM6103 | Bovine | USA | NE | [NAME] | [NAME] | NE | EXHX01.0124j | EXHA26.0015j | NE | NE | NE | 167 | [NAME]. 2007 | This study
Mandrell | RM6119 | Bovine | USA | NE | [NAME] | [NAME] | NE | EXHX01.0371j | EXHA26.2383j | NE | NE | NE | 32 | [NAME]. 2007 | This study
Mandrell | RM6406 | Soil | USA | NE | [NAME] | [NAME] | NE | NE | NE | NE | NE | NE | 167 | [NAME]. 2007 | This study
Mandrell | RM6800 | Human | USA | NE | [NAME] | [NAME] | NE | EXHX01.1860j | EXHA26.0265j | NE | NE | NE | 32 | [NAME]. 2007 | This study
IDPH | 31277 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 165 | IDPHk | Whitworth et al. 2008
Acheson-MA | 2 | Human | USA | Human, tir T | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 50 | DAl | Whitworth et al. 2008
WSU | 757 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 41 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 817 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 33 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 827 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 90 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 935 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 159 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 961 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 119 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1015 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1041 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 6 | 111000 | 90 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1048 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 55 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1053 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 116 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1104 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 108 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1119 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 92 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1124 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 145 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1136 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 99 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1159 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 139 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1160 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 10 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1273 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 139 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 1328 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 140 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 2311 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 6 | 111000 | 90 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 2571 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 6 | 111000 | 89 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 3041 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 55 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 3214 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 94 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 3281 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 120 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 3753 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 4048 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 31 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 5203 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 19 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 5612 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 5987 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 159 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 6025 | Bovine | USA | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 91 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 6040 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 48 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7407 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 118 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7409 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 146 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7416 | Bovine | Japan | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 63 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7420 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 142 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7421 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 6 | 111000 | 141 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7423 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 93 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7433 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 93 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7436 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 104 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7439 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 94 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7460 | Bovine | Japan | NE | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 85 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7469 | Bovine | Japan | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 160 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7478 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 93 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7484 | Bovine | Japan | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 55 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7488 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 93 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7495 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 112 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7500 | Bovine | Japan | NE | [NAME] | [NAME] | A | NE | NE | NE | 5 | 011000 | 118 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7505 | Bovine | Japan | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 55 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7622 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 147 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7630 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7632 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7636 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 6 | 111000 | 70 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7637 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 5 | 011000 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7638 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7641 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 10 | 001100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7644 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 10 | 001100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7648 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 148 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7649 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 6 | 111000 | 160 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 7653 | Bovine | Scotland | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 67 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8176 | Bovine | Australia | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 10 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8177 | Bovine | Australia | NE | [NAME] | [NAME] | A | NE | NE | NE | 1 | 011100 | 94 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8179 | Bovine | Australia | NE | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 10 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8182 | Bovine | Australia | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 10 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8183 | Bovine | Australia | NE | [NAME] | [NAME] | T | NE | NE | NE | 15 | 110000 | 90 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8184 | Bovine | Australia | NE | [NAME] | [NAME] | T | NE | NE | NE | 16 | 111100 | 7 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8185 | Bovine | Australia | NE | [NAME] | [NAME] | A | NE | NE | NE | 1 | 011100 | 94 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8832 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 57 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8833 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 10 | 001100 | 2 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8834 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 3 | 111111 | 54 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
WSU | 8837 | Bovine | USA | NE | [NAME] | [NAME] | T | NE | NE | NE | 1 | 011100 | 2 | [NAME] et [NAME]. 2003b | Whitworth et al. 2008
MB | 01/E410 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HKm | This study
MB | 02/E121 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 03/E55 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 76 | MB, HK | This study
MB | 0301/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 0355/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 1104/96 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 72 | MB, HK | This study
MB | 1527/97 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 78 | MB, HK | This study
MB | 1575/96 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 71 | MB, HK | This study
MB | 1691/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 2313/96 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | ND | MB, HK | This study
MB | 2492/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | ND | MB, HK | This study
MB | 2517/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 77 | MB, HK | This study
MB | 2696/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 2841/01 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 77 | MB, HK | This study
MB | 3317/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 77 | MB, HK | This study
MB | 3355/93 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 340/97 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | ND | MB, HK | This study
MB | 3680/98 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 73 | MB, HK | This study
MB | 3692-99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 3816/96 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 71 | MB, HK | This study
MB | 3857/98 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 386/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 3998/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 76 | MB, HK | This study
MB | 4100/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 77 | MB, HK | This study
MB | 493/89 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 5376/99 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 79 | MB, HK | This study
MB | 7006/96 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | ND | MB, HK | This study
MB | DN-940/00 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 77 | MB, HK | This study
MB | [NAME] 3112/93 | Human | Germany | NE | pos | NE | T | NE | NE | NE | 11 | 010000 | 72 | MB, HK | This study
MB | 0025/01 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 174 | MB, HK | This study
MB | 0093/03 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 68 | MB, HK | This study
MB | 0095/03 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 5 | 011000 | 85 | MB, HK | This study
MB | 0144/03 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 6 | 111000 | 70 | MB, HK | This study
MB | 0171/03 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 67 | MB, HK | This study
MB | 0205/01 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 65 | MB, HK | This study
MB | 0279/02 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 0473/02 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 174 | MB, HK | This study
MB | 0846/02 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 5 | 011000 | 147 | MB, HK | This study
MB | 0860/02 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 11 | 010000 | 74 | MB, HK | This study
MB | 0865/99 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 1867/99 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 148 | MB, HK | This study
MB | 2085/98 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 2483/00 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 3 | 111111 | 15 | MB, HK | This study
MB | 2857/98 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 162 | MB, HK | This study
MB | 3159/01 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 68 | MB, HK | This study
MB | 3205/98 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 3232/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 3780/01 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 4366/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 4391/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 3 | 111111 | 12 | MB, HK | This study
MB | 4544/99 | Human | Germany | NE | [NAME] | NE | A | NE | NE | NE | 6 | 111000 | 121 | MB, HK | This study
MB | 4597/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 68 | MB, HK | This study
MB | 4598/97 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 4734/00 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 6334/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 6468/97 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 147 | MB, HK | This study
MB | 6831/96 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 1 | 011100 | 173 | MB, HK | This study
MB | DN-771/01 | Human | Germany | NE | [NAME] | NE | T | NE | NE | NE | 5 | 011000 | 88 | MB, HK | This study
FSIS | F7650 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2224 | EXHA26.2899 | 53 | 1 | 011100 | 159 | MHn | Whitworth et al. 2008
FSIS | F6389 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0945 | C | 32 | 5 | 011000 | 96 | MH | Whitworth et al. 2008
FSIS | F7311 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0945 | C | 32 | 5 | 011000 | 95 | MH | Whitworth et al. 2008
FSIS | F1584 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0103 | EXHA26.0379 | 10 | 3 | 111111 | 49 | MH | Whitworth et al. 2008
FSIS | F1558 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0103 | EXHA26.0379 | 10 | 3 | 111111 | 49 | MH | Whitworth et al. 2008
FSIS | F6293 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0897 | EXHA26.0569 | 31 | 3 | 111111 | 13 | MH | Whitworth et al. 2008
FSIS | F2035 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0897 | EXHA26.0569 | 31 | 3 | 111111 | 13 | MH | Whitworth et al. 2008
FSIS | F2004 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | EXHA26.2829 | 64 | 3 | 111111 | 33 | MH | Whitworth et al. 2008
FSIS | F3901 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0047 | Unique | 5 | 6 | 111000 | 90 | MH | Whitworth et al. 2008
FSIS | F3346 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0667 | EXHA26.1068 | 28 | 6 | 111000 | 123 | MH | Whitworth et al. 2008
FSIS | F8181 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | EXHA26.2917 | 65 | 8 | 101100 | 19 | MH | Whitworth et al. 2008
FSIS | F3995 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0667 | EXHA26.1068 | 28 | 6 | 111000 | 123 | MH | Whitworth et al. 2008
FSIS | F1668 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F8449 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F7611 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2947 | EXHA26.0257 | 56 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F6224 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1531 | Unique | 48 | 12 | 011011 | 3 | MH | Whitworth et al. 2008
FSIS | F3134 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1294 | EXHA26.2941 | 42 | 3 | 111111 | 33 | MH | Whitworth et al. 2008
FSIS | F1195 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0008 | EXHA26.0569 | 3 | 3 | 111111 | 29 | MH | Whitworth et al. 2008
FSIS | F1968 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2978 | Unique | 57 | 1 | 011100 | 167 | MH | Whitworth et al. 2008
FSIS | F7547 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0200 | D | 16 | 1 | 011100 | 167 | MH | Whitworth et al. 2008
FSIS | F4997 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0200 | Unique | 17 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F3937 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0224 | EXHA26.0536 | 19 | 1 | 011100 | 156 | MH | Whitworth et al. 2008
FSIS | F2814 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0200 | D | 16 | 1 | 011100 | 168 | MH | Whitworth et al. 2008
FSIS | F3671 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | D | 11 | 1 | 011100 | 168 | MH | Whitworth et al. 2008
FSIS | F8086 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.3612 | EXHA26.0722 | 58 | 3 | 111111 | 44 | MH | Whitworth et al. 2008
FSIS | F5663 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0087 | EXHA26.0722 | 9 | 3 | 111111 | 45 | MH | Whitworth et al. 2008
FSIS | F3715 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F5658 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F6029 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F8426 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F3711 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0124 | EXHA26.0332 | 12 | 1 | 011100 | 165 | MH | Whitworth et al. 2008
FSIS | F1253 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0264 | EXHA26.0722 | 24 | 3 | 111111 | 45 | MH | Whitworth et al. 2008
FSIS | F6877 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.4045 | EXHA26.0660 | 60 | 3 | 111111 | 51 | MH | Whitworth et al. 2008
FSIS | F8917 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0259 | EXHA26.0660 | 23 | 3 | 111111 | 51 | MH | Whitworth et al. 2008
FSIS | F6235 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1294 | EXHA26.2628 | 41 | 3 | 111111 | 55 | MH | Whitworth et al. 2008
FSIS | F2870 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2175 | EXHA26.0964 | 51 | ND | ND | 48 | MH | Whitworth et al. 2008
FSIS | F8437 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1031 | EXHA26.0584 | 34 | 13 | 101000 | 90 | MH | Whitworth et al. 2008
FSIS | F6321 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1031 | EXHA26.0965 | 35 | 16 | 111100 | 90 | MH | Whitworth et al. 2008
FSIS | F6131 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0272 | EXHA26.0684 | 25 | 1 | 011100 | 1 | MH | Whitworth et al. 2008
FSIS | F2890 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0272 | EXHA26.0684 | 25 | 1 | 011100 | 1 | MH | Whitworth et al. 2008
FSIS | F4905 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2197 | EXHA26.0200 | 52 | 19 | 010100 | 2 | MH | Whitworth et al. 2008
FSIS | F3345 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0836 | EXHA26.0238 | 29 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F1081 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | [NAME] | 63 | 1 | 011100 | 1 | MH | Whitworth et al. 2008
FSIS | F6913 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0272 | EXHA26.0684 | 25 | 10 | 001100 | 1 | MH | Whitworth et al. 2008
FSIS | F5391 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0004 | EXHA26.0965 | 2 | 3 | 111111 | 37 | MH | Whitworth et al. 2008
FSIS | F4172 | Ground beef | USA | NE | [NAME] | [NAME] | T | [NAME] | EXHA26.3035 | 55 | 3 | 111111 | 48 | MH | Whitworth et al. 2008
FSIS | F5433 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1991 | EXHA26.0569 | 50 | 3 | 111111 | 22 | MH | Whitworth et al. 2008
FSIS | F8151 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1294 | EXHA26.0238 | 39 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F3753 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | EXHA26.0513 | 70 | 3 | 111111 | ND | MH | Whitworth et al. 2008
FSIS | F8110 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1294 | EXHA26.0569 | 40 | 3 | 111111 | 22 | MH | Whitworth et al. 2008
FSIS | [NAME] | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0238 | EXHA26.0001 | 21 | 3 | 111111 | ND | MH | Whitworth et al. 2008
FSIS | [NAME] | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0238 | EXHA26.0001 | 21 | 3 | 111111 | 28 | MH | Whitworth et al. 2008
FSIS | F4649 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0836 | EXHA26.0238 | 29 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F4579 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1200 | EXHA26.2160 | 38 | 5 | 011000 | 147 | MH | Whitworth et al. 2008
FSIS | F4285 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1068 | Unique | 37 | 5 | 011000 | 83 | MH | Whitworth et al. 2008
FSIS | F4394 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0667 | EXHA26.1068 | 28 | 6 | 111000 | 127 | MH | Whitworth et al. 2008
FSIS | F4801 | Ground beef | USA | NE | [NAME] | [NAME] | A | Unique | Unique | 67 | 5 | 011000 | 96 | MH | Whitworth et al. 2008
FSIS | F2347 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0074 | EXHA26.2829 | 8 | 8 | 101100 | 28 | MH | Whitworth et al. 2008
FSIS | F7280 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0224 | [NAME] | 20 | 1 | 011100 | 150 | MH | Whitworth et al. 2008
FSIS | F4705 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0325 | EXHA26.0041 | 26 | 1 | 011100 | 51 | MH | Whitworth et al. 2008
FSIS | F3913 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0238 | EXHA26.2534 | 22 | 3 | 111111 | 37 | MH | Whitworth et al. 2008
FSIS | F6226 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0132 | EXHA26.1161 | 13 | 3 | 111111 | 31 | MH | Whitworth et al. 2008
FSIS | F2975 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0132 | EXHA26.1161 | 13 | 3 | 111111 | 31 | MH | Whitworth et al. 2008
FSIS | F5821 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0836 | EXHA26.0238 | 29 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F7949 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.4213 | EXHA26.1161 | 61 | 3 | 111111 | 31 | MH | Whitworth et al. 2008
FSIS | F5220 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1850 | EXHA26.0014 | 49 | 3 | 111111 | 54 | MH | Whitworth et al. 2008
FSIS | F6294 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0059 | EXHA26.1067 | 6 | 3 | 111111 | 15 | MH | Whitworth et al. 2008
FSIS | F3113 | Ground beef | USA | NE | [NAME] | pos | T | EXHX01.1298 | Unique | 43 | 5 | 011000 | 80 | MH | Whitworth et al. 2008
FSIS | F3847 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0221 | EXHA26.2326 | 18 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F8747 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1401 | EXHA26.0569 | 44 | 3 | 111111 | 22 | MH | Whitworth et al. 2008
FSIS | F8492 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | Unique | 68 | 6 | 111000 | 175 | MH | Whitworth et al. 2008
FSIS | F2503 | Ground beef | USA | NE | [NAME] | [NAME] | A | A | B | 1 | 6 | 111000 | 139 | MH | Whitworth et al. 2008
FSIS | F5757 | Ground beef | USA | NE | [NAME] | [NAME] | A | A | B | 1 | 6 | 111000 | 138 | MH | Whitworth et al. 2008
FSIS | F3398 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1433 | EXHA26.2110 | 46 | 10 | 001100 | 160 | MH | Whitworth et al. 2008
FSIS | F7092 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0160 | EXHA26.2871 | 15 | ND | ND | 19 | MH | Whitworth et al. 2008
FSIS | F5309 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | Unique | 66 | 19 | 010100 | 4 | MH | Whitworth et al. 2008
FSIS | F1273 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.3661 | A | 59 | 5 | 011000 | 94 | MH | Whitworth et al. 2008
FSIS | F1659 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.3661 | A | 59 | 5 | 011000 | 94 | MH | Whitworth et al. 2008
FSIS | F5921 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.3661 | A | 59 | 5 | 011000 | 94 | MH | Whitworth et al. 2008
FSIS | F5674 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.3661 | A | 59 | 5 | 011000 | 94 | MH | Whitworth et al. 2008
FSIS | F1907 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0980 | EXHA26.0324 | 33 | 5 | 011000 | 84 | MH | Whitworth et al. 2008
FSIS | F1661 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0980 | EXHA26.0324 | 33 | 5 | 011000 | 84 | MH | Whitworth et al. 2008
FSIS | F3674 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0873 | EXHA26.0536 | 30 | 19 | 010100 | 159 | MH | Whitworth et al. 2008
FSIS | F7053 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0873 | EXHA26.0536 | 30 | 1 | 011100 | 159 | MH | Whitworth et al. 2008
FSIS | [NAME] | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1414 | EXHA26.0961 | 45 | 3 | 111111 | 15 | MH | Whitworth et al. 2008
FSIS | F2858 | Ground beef | USA | NE | [NAME] | [NAME] | A | EXHX01.0667 | EXHA26.1068 | 28 | 6 | 111000 | 123 | MH | Whitworth et al. 2008
FSIS | F5305 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0074 | EXHA26.2829 | 8 | 8 | 101100 | 28 | MH | Whitworth et al. 2008
FSIS | [NAME] | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2276 | EXHA26.0569 | 69 | 3 | 111111 | ND | MH | Whitworth et al. 2008
FSIS | F1506 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.2333 | Unique | 54 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F1609 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1068 | EXHA26.0001 | 36 | 3 | 111111 | 28 | MH | Whitworth et al. 2008
FSIS | F4447 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0338 | EXHA26.0569 | 27 | 3 | 111111 | 22 | MH | Whitworth et al. 2008
FSIS | F2812 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.1487 | EXHA26.0722 | 47 | ND | ND | 19 | MH | Whitworth et al. 2008
FSIS | F8096 | Ground beef | USA | NE | [NAME] | [NAME] | T | Unique | EXHA26.0001 | 62 | 3 | 111111 | 28 | MH | Whitworth et al. 2008
FSIS | F4026 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0012 | [NAME] | 4 | 3 | 111111 | 37 | MH | Whitworth et al. 2008
FSIS | F3210 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0074 | EXHA26.0569 | 7 | 3 | 111111 | 19 | MH | Whitworth et al. 2008
FSIS | F2231 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0134 | EXHA26.0536 | 14 | 1 | 011100 | 154 | MH | Whitworth et al. 2008
NP | EDL933 | Ground beef | USA | NE | [NAME] | [NAME] | T | EXHX01.0028j | EXHA26.0711j | NE | 3 | 111111 | 54 | [NAME] 2001 | Whitworth et al. 2008
aTranslocated intim receptor gene polymorphism tir 255 T>A.
bPFGE patterns labeled “A”, “B”, “C”, “D”, or “unique” were not observed in the Pulsenet USA STEC O157 database.
cPhage genotype codes contain six characters (0 for absence, 1 for presence) for the following concatenated genotypes stx 1, stx 2, yehV-left, yehV-right, wrbA-left, wrbA-right.
dGenotype numbers correspond with additional file #.
eNot evaluated.
fProvided by [NAME], DHHS, CDC, NCID.
gNot included in polymorphism-derived genotype or phage frequency calculations due to epidemiological linkage with other strains in study.
hStrain has unique polymorphism-derived genotype and is included in polymorphism-derived genotyotype and SBI genotype frequency calucaltions despite epidemiological linkage with other strain in study.
iNot determined due to incomplete genotyping.
jNot included in comparison of PFGE profiles with polymorphism-derived genotypes.
kProvided by the Illinois Department of Public Health, [NAME].
lProvided by Dr. [NAME], DHHS, FDA, CFSAN, OSCI.
mProvided by Drs. [NAME] and [NAME], University of Münster.
nProvided by Dr. [NAME], USDA, FSIS.