Spreadsheet: fe11fd46-b8a9-4a15-9855-0f91741d667b
Sheet: Sheet1

Table S2.  Protein-coding genes with RPKM > 1 in a least one sample, not overlapping ncRNA genes, displaying more than 2 fold change in expression:  UCSC genes (Based on RefSeq, UniProt, GenBank, CCDS and Comparative Genomics), with a protein ID (Uniprot, RefSeq protein or SwissProt), after removal of redundant genes. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11
chr | start | end | gene | length | reads_NT4 | reads_si6 | sumReads | RPKM_NT4 | RPKM_si6 | log_FC | FC
chr17 | 39657232 | 39661865 | [NAME] | 2219 | 77 | 532 | 609 | 0.2028 | 1.4306 | 2.8188 | 7.0558
chr6 | 53512699 | 53530506 | KLHL31 | 5742 | 264 | 1269 | 1533 | 0.2686 | 1.3187 | 2.2954 | 4.9089
chr7 | 138391039 | 138482941 | ATP6V0A4 | 3356 | 468 | 1984 | 2452 | 0.8148 | 3.5276 | 2.1141 | 4.3293
chr6 | 170140214 | 170151638 | TCTE3 | 747 | 61 | 236 | 297 | 0.4771 | 1.8851 | 1.9822 | 3.951
chr12 | 11174271 | 11175170 | TAS2R19 | 899 | 52 | 190 | 242 | 0.338 | 1.2611 | 1.8997 | 3.7314
chr19 | 18496967 | 18499986 | GDF15 | 1200 | 264 | 963 | 1227 | 1.2854 | 4.7885 | 1.8973 | 3.7252
chr17 | 66264337 | 66287405 | SLC16A6 | 2784 | 1335 | 4576 | 5911 | 2.8018 | 9.8078 | 1.8076 | 3.5005
chr2 | 902822 | 906011 | C2orf90 | 3189 | 389 | 1319 | 1708 | 0.7127 | 2.468 | 1.7919 | 3.4627
chr17 | 79276623 | 79283048 | C17orf55 | 2970 | 883 | 2724 | 3607 | 1.7371 | 5.4727 | 1.6556 | 3.1504
chr12 | 10310898 | 10324790 | OLR1 | 2538 | 2546 | 7483 | 10029 | 5.8613 | 17.5929 | 1.5857 | 3.0015
chr12 | 11182985 | 11184006 | TAS2R31 | 1021 | 82 | 240 | 322 | 0.4693 | 1.4026 | 1.5797 | 2.989
chr1 | 761586 | 762902 | RP11-206L10.16-001 | 1316 | 328 | 950 | 1278 | 1.4563 | 4.3075 | 1.5645 | 2.9578
chr2 | 233320832 | 233324740 | ALPI | 2630 | 2596 | 7506 | 10102 | 5.7674 | 17.0297 | 1.5621 | 2.9528
chr2 | 233271551 | 233275422 | [NAME] | 2492 | 653 | 1888 | 2541 | 1.5311 | 4.5207 | 1.562 | 2.9527
chr7 | 100813777 | 100823557 | C7orf52 | 3763 | 353 | 998 | 1351 | 0.5481 | 1.5825 | 1.5297 | 2.8872
chr6 | 116571132 | 116575261 | TSPYL4 | 4129 | 2375 | 6044 | 8419 | 3.3608 | 8.7344 | 1.3779 | 2.5989
chr2 | 233243347 | 233247597 | ALPP | 2877 | 965 | 2447 | 3412 | 1.9598 | 5.0751 | 1.3727 | 2.5896
chr1 | 41154751 | 41157933 | LOC100130557 | 3182 | 1590 | 3775 | 5365 | 2.9196 | 7.079 | 1.2778 | 2.4246
chr9 | 91150015 | 91190703 | NXNL2 | 1628 | 174 | 394 | 568 | 0.6245 | 1.4441 | 1.2094 | 2.3124
chr4 | 15683351 | 15692062 | LOC285550 | 4377 | 1484 | 3352 | 4836 | 1.981 | 4.5696 | 1.2058 | 2.3067
chr1 | 23695463 | 23698278 | C1orf213 | 2815 | 445 | 965 | 1410 | 0.9237 | 2.0455 | 1.147 | 2.2146
chr16 | 3062456 | 3064506 | CLDN9 | 2050 | 168 | 363 | 531 | 0.4788 | 1.0566 | 1.1418 | 2.2066
chr19 | 49316273 | 49339934 | HSD17B14 | 1237 | 497 | 1072 | 1569 | 2.3475 | 5.171 | 1.1393 | 2.2027
chr3 | 52863875 | 52869318 | MUSTN1 | 1624 | 234 | 504 | 738 | 0.8419 | 1.8518 | 1.1372 | 2.1996
chr19 | 14183687 | 14185873 | BC000492 | 2186 | 290 | 621 | 911 | 0.7751 | 1.6951 | 1.1289 | 2.1868
chr11 | 57151266 | 57158130 | PRG2 | 1038 | 1732 | 3697 | 5429 | 9.7494 | 21.2523 | 1.1242 | 2.1799
chr17 | 39775691 | 39780882 | KRT17 | 2012 | 406 | 864 | 1270 | 1.179 | 2.5624 | 1.1199 | 2.1733
chr16 | 89724209 | 89737675 | C16orf55 | 5547 | 2641 | 5579 | 8220 | 2.7819 | 6.0014 | 1.1092 | 2.1573
chr17 | 5082830 | 5095178 | ZNF594 | 4877 | 2911 | 6060 | 8971 | 3.4875 | 7.4144 | 1.0881 | 2.126
chr12 | 11148560 | 11150474 | TAS2R20 | 1914 | 292 | 605 | 897 | 0.8914 | 1.8861 | 1.0813 | 2.1159
chr5 | 180683387 | 180688119 | TRIM52 | 2226 | 2158 | 4465 | 6623 | 5.6644 | 11.9688 | 1.0793 | 2.113
chr1 | 241792168 | 241799232 | CHML | 7064 | 16405 | 33802 | 50207 | 13.5692 | 28.5526 | 1.0733 | 2.1042
chr17 | 32582295 | 32584218 | CCL2 | 745 | 125 | 257 | 382 | 0.9804 | 2.0584 | 1.0702 | 2.0997
chr3 | 52444526 | 52457656 | PHF7 | 2275 | 456 | 921 | 1377 | 1.1711 | 2.4156 | 1.0445 | 2.0626
chr19 | 21541734 | 21571383 | ZNF738 | 11720 | 1129 | 2277 | 3406 | 0.5629 | 1.1593 | 1.0424 | 2.0597
chr16 | 67918780 | 67920270 | NRN1L | 632 | 90 | 180 | 270 | 0.8321 | 1.6995 | 1.0303 | 2.0425
chr2 | 101964815 | 102003965 | [NAME] | 3488 | 434 | 866 | 1300 | 0.727 | 1.4815 | 1.027 | 2.0378
chr10 | 38383274 | 38412276 | ZNF37A | 7016 | 6229 | 12412 | 18641 | 5.1875 | 10.5562 | 1.025 | 2.0349
chrX | 19007426 | 19140677 | GPR64 | 4773 | 6721 | 13293 | 20014 | 8.2276 | 16.6182 | 1.0142 | 2.0198
chr8 | 143761874 | 143764142 | PSCA | 1019 | 546 | 1078 | 1624 | 3.1307 | 6.3125 | 1.0117 | 2.0163
chrX | 48928819 | 48931662 | PRAF2 | 1261 | 2398 | 1173 | 3571 | 11.1112 | 5.5506 | -1.0013 | 0.4995
chr16 | 2521499 | 2524145 | [NAME] | 1985 | 913 | 445 | 1358 | 2.6874 | 1.3377 | -1.0065 | 0.4978
chr17 | 73083821 | 73102246 | SLC16A5 | 2619 | 5738 | 2786 | 8524 | 12.8013 | 6.3474 | -1.012 | 0.4958
chr8 | 124191286 | 124222317 | FAM83A | 5248 | 2169 | 1050 | 3219 | 2.4149 | 1.1938 | -1.0163 | 0.4944
chr17 | 74722924 | 74729961 | C17orf95 | 1162 | 4697 | 2273 | 6970 | 23.618 | 11.672 | -1.0168 | 0.4942
chr7 | 98992589 | 99006292 | PDAP1 | 2382 | 15912 | 7680 | 23592 | 39.0311 | 19.2386 | -1.0206 | 0.4929
chr5 | 34017963 | 34043317 | C1QTNF3 | 3896 | 831 | 401 | 1232 | 1.2463 | 0.6142 | -1.0209 | 0.4928
chr17 | 8191988 | 8193408 | RANGRF | 1145 | 4418 | 2130 | 6548 | 22.5449 | 11.1001 | -1.0222 | 0.4924
chr11 | 126139054 | 126148026 | FOXRED1 | 2442 | 10088 | 4839 | 14927 | 24.1372 | 11.824 | -1.0295 | 0.4899
chr19 | 46001730 | 46005762 | FLJ40125 | 1828 | 361 | 173 | 534 | 1.1539 | 0.5647 | -1.0309 | 0.4894
chr19 | 49838427 | 49843859 | CD37 | 3577 | 1909 | 913 | 2822 | 3.1183 | 1.523 | -1.0338 | 0.4884
chr1 | 901876 | 910482 | PLEKHN1 | 2554 | 647 | 309 | 956 | 1.4802 | 0.7219 | -1.0358 | 0.4877
chr17 | 58029723 | 58042117 | RNFT1 | 2915 | 2039 | 973 | 3012 | 4.087 | 1.9917 | -1.037 | 0.4873
chr19 | 49834803 | 49843559 | AK097351 | 684 | 490 | 232 | 722 | 4.1857 | 2.0239 | -1.0483 | 0.4835
chr3 | 49449638 | 49453908 | TCTA | 2146 | 1781 | 843 | 2624 | 4.8491 | 2.344 | -1.0488 | 0.4834
chr22 | 24094933 | 24096630 | VPREB3 | 581 | 235 | 110 | 345 | 2.3633 | 1.1297 | -1.0648 | 0.478
chr20 | 34203808 | 34208965 | SPAG4 | 1452 | 1747 | 814 | 2561 | 7.03 | 3.3451 | -1.0715 | 0.4758
chr2 | 119981383 | 120023225 | STEAP3 | 4582 | 6036 | 2800 | 8836 | 7.697 | 3.6463 | -1.0779 | 0.4737
chr15 | 66840538 | 66858317 | LCTL | 2248 | 1278 | 591 | 1869 | 3.3217 | 1.5687 | -1.0823 | 0.4723
chr6 | 34845554 | 34855819 | TAF11 | 1533 | 4615 | 2131 | 6746 | 17.5897 | 8.2946 | -1.0845 | 0.4716
chr12 | 49741040 | 49745683 | DNAJC22 | 2287 | 1542 | 711 | 2253 | 3.9395 | 1.8551 | -1.0866 | 0.4709
chr17 | 80395002 | 80398408 | AK297272 | 1139 | 1207 | 556 | 1763 | 6.1917 | 2.9128 | -1.088 | 0.4704
chr18 | 34366471 | 34409158 | C18orf10 | 3067 | 9978 | 4572 | 14550 | 19.0089 | 8.895 | -1.0956 | 0.4679
chr1 | 79115476 | 79129761 | IFI44 | 2524 | 542 | 248 | 790 | 1.2547 | 0.5863 | -1.0976 | 0.4673
chr5 | 141303384 | 141321611 | KIAA0141 | 4957 | 13407 | 6104 | 19511 | 15.803 | 7.3477 | -1.1048 | 0.465
chr11 | 537521 | 554915 | LRRC56 | 2773 | 684 | 310 | 994 | 1.4412 | 0.6671 | -1.1114 | 0.4628
chr2 | 11295539 | 11318996 | PQLC3 | 1784 | 1138 | 514 | 1652 | 3.7271 | 1.7192 | -1.1163 | 0.4613
chr20 | 43560819 | 43587797 | C20orf119 | 2247 | 6144 | 2774 | 8918 | 15.9763 | 7.3664 | -1.1169 | 0.4611
chr6 | 159057505 | 159065740 | DYNLT1 | 695 | 4193 | 1888 | 6081 | 35.2507 | 16.2095 | -1.1208 | 0.4598
chr19 | 48835145 | 48867186 | UNQ5922 | 3206 | 1827 | 821 | 2648 | 3.3297 | 1.528 | -1.1237 | 0.4589
chr10 | 44282859 | 44285865 | HNRPA3 | 3006 | 1115 | 501 | 1616 | 2.1673 | 0.9945 | -1.1238 | 0.4589
chr16 | 2198144 | 2204140 | RAB26 | 1804 | 16692 | 7483 | 24175 | 54.063 | 24.751 | -1.1272 | 0.4578
chr17 | 40341105 | 40346550 | GHDC | 2997 | 4440 | 1986 | 6426 | 8.6561 | 3.9541 | -1.1304 | 0.4568
chr1 | 46153846 | 46160108 | TMEM69 | 1471 | 3961 | 1767 | 5728 | 15.7333 | 7.1677 | -1.1342 | 0.4556
chr6 | 28092386 | 28097854 | [NAME] | 1905 | 954 | 424 | 1378 | 2.926 | 1.3281 | -1.1396 | 0.4539
chr16 | 2880172 | 2882284 | ZG16B | 827 | 752 | 334 | 1086 | 5.313 | 2.4099 | -1.1406 | 0.4536
chr1 | 151313115 | 151319769 | RFX5 | 3618 | 18773 | 8294 | 27067 | 30.3175 | 13.6788 | -1.1482 | 0.4512
chr17 | 10616639 | 10633646 | TMEM220 | 3091 | 764 | 337 | 1101 | 1.4442 | 0.6506 | -1.1505 | 0.4505
chr1 | 70820492 | 70833703 | HHLA3 | 949 | 1007 | 444 | 1451 | 6.2 | 2.7917 | -1.1511 | 0.4503
chr22 | 21369441 | 21382302 | P2RX6 | 3543 | 683 | 300 | 983 | 1.1264 | 0.5052 | -1.1566 | 0.4486
chr8 | 145691737 | 145699498 | KIFC2 | 3335 | 19789 | 8666 | 28455 | 34.6702 | 15.5052 | -1.1609 | 0.4472
chr22 | 36622255 | 36636000 | APOL2 | 2892 | 3149 | 1371 | 4520 | 6.3621 | 2.8287 | -1.1694 | 0.4446
chr13 | 103436631 | 103451404 | KDELC1 | 2249 | 2682 | 1163 | 3845 | 6.9678 | 3.0856 | -1.1751 | 0.4428
chr17 | 27030533 | 27038872 | PROCA1 | 1728 | 745 | 320 | 1065 | 2.5191 | 1.105 | -1.1889 | 0.4387
chr1 | 46159999 | 46216485 | IPP | 3439 | 2023 | 865 | 2888 | 3.4371 | 1.5009 | -1.1954 | 0.4367
chr3 | 50337320 | 50349812 | HYAL1 | 3108 | 4309 | 1842 | 6151 | 8.1007 | 3.5364 | -1.1958 | 0.4366
chr7 | 150745604 | 150749843 | ACCN3 | 2088 | 2584 | 1103 | 3687 | 7.2309 | 3.1521 | -1.1979 | 0.4359
chr1 | 206778086 | 206785904 | HCA56 | 1361 | 4622 | 1963 | 6585 | 19.8427 | 8.6063 | -1.2051 | 0.4337
chr19 | 36233429 | 36236336 | U2AF1L4 | 2075 | 2283 | 962 | 3245 | 6.4286 | 2.7664 | -1.2165 | 0.4303
chr21 | 47720344 | 47743785 | C21orf58 | 4684 | 7690 | 3229 | 10919 | 9.5926 | 4.1134 | -1.2216 | 0.4288
chr12 | 7247150 | 7261793 | C1RL | 3655 | 7392 | 3092 | 10484 | 11.8169 | 5.0478 | -1.2271 | 0.4272
chr6 | 150045452 | 150067688 | NUP43 | 3852 | 7767 | 3227 | 10994 | 11.7814 | 4.9988 | -1.2369 | 0.4243
chr11 | 71164216 | 71212579 | [NAME] | 5911 | 6379 | 2648 | 9027 | 6.3055 | 2.6731 | -1.2381 | 0.4239
chr17 | 42253353 | 42264082 | C17orf65 | 2243 | 1975 | 819 | 2794 | 5.1448 | 2.1788 | -1.2396 | 0.4235
chr2 | 85825670 | 85829821 | TMEM150A | 2421 | 810 | 328 | 1138 | 1.9549 | 0.8084 | -1.2739 | 0.4135
chr17 | 42248073 | 42256451 | ASB16 | 2139 | 1825 | 737 | 2562 | 4.9852 | 2.0559 | -1.2778 | 0.4124
chr17 | 19641299 | 19651746 | ALDH3A1 | 4054 | 1910 | 768 | 2678 | 2.7528 | 1.1304 | -1.2841 | 0.4106
chr16 | 70789000 | 70807145 | hCG_1998535 | 2180 | 392 | 157 | 549 | 1.0506 | 0.4297 | -1.2898 | 0.409
chr14 | 74318533 | 74352166 | PTGR2 | 2679 | 2699 | 1080 | 3779 | 5.8865 | 2.4055 | -1.2911 | 0.4086
chr10 | 70046784 | 70066660 | mawbp | 2375 | 680 | 272 | 952 | 1.6729 | 0.6834 | -1.2916 | 0.4085
chr17 | 48046561 | 48052322 | DLX4 | 2316 | 2213 | 882 | 3095 | 5.583 | 2.2724 | -1.2968 | 0.407
chr9 | 99794939 | 99822167 | CTSL2 | 2384 | 3430 | 1354 | 4784 | 8.4065 | 3.389 | -1.3107 | 0.4031
chr1 | 2518248 | 2522902 | C1orf93 | 2796 | 1444 | 568 | 2012 | 3.0176 | 1.2122 | -1.3158 | 0.4017
chr1 | 45274153 | 45279801 | BTBD19 | 1637 | 684 | 269 | 953 | 2.4414 | 0.9805 | -1.3161 | 0.4016
chr19 | 45174723 | 45187625 | [NAME] | 2246 | 1473 | 578 | 2051 | 3.832 | 1.5356 | -1.3193 | 0.4007
chr16 | 1823228 | 1826340 | EME2 | 1436 | 1150 | 447 | 1597 | 4.6792 | 1.8574 | -1.333 | 0.3969
chr20 | 58438618 | 58507209 | SYCP2 | 5479 | 4591 | 1783 | 6374 | 4.8959 | 1.9418 | -1.3342 | 0.3966
chr16 | 56899118 | 56949760 | SLC12A3 | 5565 | 31793 | 12346 | 44139 | 33.3806 | 13.2378 | -1.3344 | 0.3966
chr1 | 205350512 | 205391181 | LEMD1 | 921 | 267 | 103 | 370 | 1.6939 | 0.6673 | -1.3439 | 0.394
chr22 | 24376140 | 24384284 | GSTT1 | 2155 | 11623 | 4480 | 16103 | 31.5137 | 12.4046 | -1.3451 | 0.3936
chr11 | 119039436 | 119052066 | DLNB26 | 2599 | 3443 | 1325 | 4768 | 7.7403 | 3.042 | -1.3474 | 0.393
chr15 | 66797430 | 66841816 | ZWILCH | 3271 | 9591 | 3668 | 13259 | 17.1321 | 6.6912 | -1.3564 | 0.3906
chr12 | 56618124 | 56623637 | OBFC2B | 1782 | 6762 | 2571 | 9333 | 22.1715 | 8.6089 | -1.3648 | 0.3883
chr12 | 121458094 | 121476780 | OASL | 1820 | 2555 | 962 | 3517 | 8.2025 | 3.154 | -1.3789 | 0.3845
chr1 | 167510252 | 167523056 | CREG1 | 2023 | 6220 | 2320 | 8540 | 17.9648 | 6.843 | -1.3925 | 0.3809
chr22 | 38474144 | 38479170 | SLC16A8 | 1895 | 634 | 233 | 867 | 1.9548 | 0.7337 | -1.4138 | 0.3753
chr11 | 119039436 | 119054723 | NLRX1 | 4126 | 5470 | 2000 | 7470 | 7.7462 | 2.8924 | -1.4212 | 0.3734
chr8 | 49984902 | 49988641 | C8orf22 | 1264 | 13218 | 4736 | 17954 | 61.1008 | 22.3572 | -1.4504 | 0.3659
chr17 | 4835591 | 4838324 | GP1BA | 2461 | 1590 | 569 | 2159 | 3.775 | 1.3796 | -1.4522 | 0.3655
chr12 | 51318802 | 51324574 | DKFZp586A0522 | 1189 | 8737 | 3117 | 11854 | 42.9347 | 15.6426 | -1.4567 | 0.3643
chr10 | 104590289 | 104597290 | CYP17A1 | 1868 | 543 | 192 | 735 | 1.6984 | 0.6133 | -1.4695 | 0.3611
chr16 | 84328400 | 84363446 | WFDC1 | 1374 | 8029 | 2828 | 10857 | 34.1431 | 12.2814 | -1.4751 | 0.3597
chr12 | 51318533 | 51326299 | METTL7A | 3389 | 16066 | 5655 | 21721 | 27.699 | 9.9567 | -1.4761 | 0.3595
chr1 | 153533586 | 153538306 | S100A2 | 960 | 925 | 322 | 1247 | 5.6299 | 2.0014 | -1.4921 | 0.3555
chr7 | 16832265 | 16844738 | AGR2 | 981 | 916 | 305 | 1221 | 5.4558 | 1.8552 | -1.5562 | 0.34
chr10 | 22605298 | 22609236 | COMMD3 | 1739 | 3246 | 1047 | 4293 | 10.9063 | 3.5925 | -1.6021 | 0.3294
chr1 | 6266188 | 6281351 | RNF207 | 5692 | 7237 | 2245 | 9482 | 7.4289 | 2.3534 | -1.6584 | 0.3168
chr1 | 156776034 | 156786640 | SH2D2A | 1845 | 486 | 146 | 632 | 1.5391 | 0.4722 | -1.7047 | 0.3068
chr20 | 31755959 | 31769223 | C20orf70 | 1052 | 373 | 111 | 484 | 2.0717 | 0.6296 | -1.7183 | 0.3039
chr6 | 3045617 | 3046032 | FAM136B | 415 | 111 | 33 | 144 | 1.5628 | 0.4745 | -1.7197 | 0.3036
chr1 | 154991004 | 155006257 | DCST2 | 2485 | 731 | 214 | 945 | 1.7188 | 0.5139 | -1.7419 | 0.299
chr22 | 42321035 | 42322821 | TNFRSF13C | 937 | 2213 | 631 | 2844 | 13.7997 | 4.0183 | -1.78 | 0.2912
chr7 | 16840477 | 16844738 | hAG-2/R | 1130 | 330 | 90 | 420 | 1.7063 | 0.4752 | -1.8442 | 0.2785
chr19 | 12907634 | 12912694 | PRDX2 | 1810 | 65447 | 17514 | 82961 | 211.2707 | 57.7378 | -1.8715 | 0.2733
chr2 | 132552533 | 132559234 | C2orf27B | 1325 | 338 | 87 | 425 | 1.4905 | 0.3918 | -1.9276 | 0.2629
chr3 | 158384203 | 158390482 | LXN | 1122 | 1079 | 264 | 1343 | 5.619 | 1.404 | -2.0008 | 0.2499
chr8 | 144915770 | 144924200 | NRBP2 | 4507 | 25319 | 5875 | 31194 | 32.8237 | 7.7781 | -2.0772 | 0.237
chr12 | 91539035 | 91576806 | DCN | 2569 | 558 | 126 | 684 | 1.2691 | 0.2927 | -2.1165 | 0.2306
chr8 | 144915916 | 144919346 | pp9320 | 2570 | 12371 | 2791 | 15162 | 28.1255 | 6.4801 | -2.1178 | 0.2304