Spreadsheet: 36052958-bb74-4f2d-a9b8-3a1e614c30d5
Sheet: 81116

Table S11. sRNA candidates in the chromosomes of four C. jejuni strains - 81116.
This table lists sRNA candidates in strain 81116.
sRNA | Strand | Start | End | Length | Orientation | LFG | RFG | LFG Description | RFG Description | Comments
SRP RNA | + | 75877 | 75984 | 108 | <>> | C8J_0048 | C8J_0049 | hypothetical protein | hypothetical protein | Detected on Northern blot
CJnc10 | + | 100738 | 100833 | 96 | >>< | C8J_0076 | C8J_0077 | hypothetical protein | putative aspartate racemase | Detected on Northern blot
CJnc20 | - | 248257 | 248102 | 156 | <<< | C8J_0242 | C8J_0243 | putative cytochrome C-type haem-binding periplasmic protein | hypothetical protein | Detected on Northern blot
TPP | + | 427729 | 427864 | 136 | >>> | C8J_0425 | C8J_0426 | DNA polymerase III subunit epsilon | thiamine biosynthesis protein (thiC) | Detected in dRNA-seq data. Not probed on Northern blot.
[NAME] | + | 439584 | - | >100 | >>< | C8J_0436 | C8J_0438 | zinc protease-like protein | group III truncated haemoglobin | Detected in dRNA-seq data. Not Detected on Northern blot.
RnpB | - | 518664 | 518348 | 317 | ><> | C8J_0511 | C8J_0512 | hypothetical protein | elongation factor P | Detected on Northern blot
CJnc50 | + | 650864 | 650959 | 96 | >>> | C8J_0651 | C8J_0652 | hypothetical protein | invasion phenotype protein | Detected in dRNA-seq data. Not probed on Northern blot.
Cjnc60 | - | 681305 | 681025 | 281 | ><> | C8J_0684 | C8J_0685 | hypothetical protein | DNA polymerase III subunit alpha | Detected on Northern blot. Note: Probably corresponds to a small mRNA. Contains non-annotated selW ORF [1].
CJnc70 | + | 879931 | 880026 | 96 | >>> | C8J_t0018 | C8J_0874 | tRNA-Leu | hypothetical protein | Detected in dRNA-seq data. Also antisense to CJnc50. Not Detected on Northern blot.
CJnc80 | - | 880052 | 879955 | >100 | ><> | C8J_t0018 | C8J_0874 | tRNA-Leu | hypothetical protein | Detected on Northern blot. Also antisense to CJnc70
CJnc100 | + | 996243 | 996319 | 77 | <>< | C8J_0985 | C8J_0986 | hypothetical protein | hypothetical protein | Detected on Northern blot.
CJnc110 | + | 1148713 | 1148849 | 137 | >>> | C8J_1142 | C8J_1143 | S-ribosylhomocysteinase | 2OG-Fe(II) oxygenase family oxidoreductase | Detected on Northern blot
6S RNA (CJnc130) | + | 1200515 | 1200700 | 186 | >>> | C8J_1192 | C8J_1194 | hypothetical protein | phosphoribosylamine-glycine ligase | Detected on Northern blot
[NAME] | + | 1209854 | 1209926 | 73 | >>> | C8J_1202 | C8J_1203 | putative phosphotyrosine protein phosphatase | major outer membrane protein | Detected on Northern blot
tmRNA | - | 1293552 | 1293194 | 359 | <<< | C8J_1278 | C8J_1279 | hypothetical protein | hypothetical protein | Detected on Northern blot. Not probed on Northern blot.
crRNA1 | + | 1440760 | 1440797 | 38 | >>> | C8J_1422 | crRNA2 | Putative molybdopterin biosynthesis MoeA protein | crRNA2 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA2 | + | 1440826 | 1440863 | 38 | >>> | crRNA1 | crRNA3 | crRNA1 | crRNA3 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA3 | + | 1440893 | 1440930 | 38 | >>> | crRNA2 | crRNA4 | crRNA2 | crRNA4 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA4 | + | 1440958 | 1440995 | 38 | >>> | crRNA3 | crRNA5 | crRNA3 | crRNA5 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA5 | + | 1441025 | 1441062 | 38 | >>> | crRNA4 | crRNA6 | crRNA4 | crRNA6 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA6 | + | 1441090 | 1441127 | 38 | >>> | crRNA5 | crRNA7 | crRNA5 | crRNA7 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA7 | + | 1441156 | 1441193 | 38 | >>> | crRNA6 | Tracr RNA | crRNA6 | TracrRNA | Detected in dRNA-seq data. Not probed on Northern blot.
TracrRNA | + | 1441289 | 1441362 | 74 | >>< | crRNA7 | C8J_1423 | crRNA7 | CRISPR-associated protein 2 (cas2) | Detected on Northern blot
CJnc170 | + | 1542619 | 1542645 | 27 | <>< | C8J_1527 | C8J_1528 | serine transporter | putative periplasmic protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc180 | + | 1563092 | 1563246 | 155 | >>< | C8J_1552 | C8J_1553 | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc190
CJnc190 | - | 1563337 | 1563121 | 217 | ><< | C8J_1552 | C8J_1553 | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc180
CJnc200 | + | 1568600 | 1568750 | 151 | >>> | C8J_1559 | C8J_1560 | hypothetical protein | FTR1 family iron permease | Detected in dRNA-seq data. Not probed on Northern blot.
CJnc230 | - | 1624711 | 1624613 | 99 | <<< | C8J_1628 | [NAME] | 7-cyano-7-deazaguanine reductase | flagellar hook protein (flgE) | Detected on Northern blot (processed)
CJas_Cj0704 | - | 671301 | - | >100 | ><> | C8J_0670 | C8J_0672 | hypothetical protein | NGG1p interacting factor 3 | Detected on Northern blot. Antisense to C8J_0671 (glycyl-tRNA synthetase subunit alpha)
CJas_Cj0168c | + | 174436 | - | >100 | >>> | C8J_t0003 | C8J_0165 | tRNA-Glu | superoxide dismutase | Detected in dRNA-seq data. Antisense to C8J_0164. Not Detected on Northern blot.
CJas_CJJ81176_1020 | + | 947560 | - | >100 | >>< | C8J_0938 | C8J_0940 | RNA polymerase sigma factor (rpoD) | rhomboid family protein | Detected in dRNA-seq data. Antisense to C8J_0939 (phosphohistidine phosphatase SixA). Not Detected on Northern blot.
[1] Gursinsky, [NAME]. Factors and selenocysteine insertion sequence requirements for the synthesis of selenoproteins from a gram-positive anaerobe in Escherichia coli. Appl Environ Microbiol 74, 1385-1393 (2008).