Spreadsheet: a610b14c-54eb-4ef9-b581-a9a669157939
Sheet: SOX2 NPC TRANSFAC Motifs THEME

[NAME] | min P-value | [NAME] | Unrefined Hypothesis | Refined Hypothesis | PWM Score Threshold
SRY(M00160), SOX5(M00042), SOX2(M01272), SOX4(M01308), SOX9(M00410) | 5.75e-63 | 0.38 | ..waACAAwa.. | ..waACAAw... | 0.75
Nanog(M01247), SMAD1(M01590), TCF-3(M01594), SOX(M01014), [NAME]), Oct-4(M01125) | 1.88e-42 | 0.4 | .....a.rAsAAwrg..... | .....a.rAsAAwrg..... | 0.7
E2F(M00425), E2F(M00050), E2F-4:DP-2(M00739), E2F-1:DP-1(M00736), E2F-1:DP-2(M00737), E2F-4:DP-1(M00738), [NAME]:E2F-1:DP-1(M00740), E2F(M00426), E2F(M00427) | 9.33e-22 | 0.43 | tTTSGCGS | tTTsGCGS | 0.79
E2F-1(M00430), E2F(M00803) | 1.31e-18 | 0.43 | .TTsGCGG | .TTsSCGS | 0.79
Hoxd9(M01834), IPF1(M01255), IPF1(M01013) | 5.35e-17 | 0.44 | m..CATwAAa | m..CATwAAr | 0.79
NF-1(M00806), [NAME]), NF-1(M00193) | 3.79e-15 | 0.43 | ..gg......GCCAA.. | ...g......GCCAa.. | 0.68
CBF1(M01727), LBP-1(M00644), HEB(M00698) | 5.75e-15 | 0.46 | CAGC.r | CAGC.r | 0.78
FOXO1(M01968), FOXO1(M01216), [NAME]), HNF3A(M01261), FOXO4(M00472), HNF-3gamma(M02015), FOXO3A(M01137) | 3.19e-14 | 0.45 | TGTTkAC | TGTTkaC | 0.77
TCF-4(M02033), [NAME]), LEF1(M00805) | 3.59e-14 | 0.43 | atCAAAG... | a.CAAAG... | 0.77
APOLYA(M00310) | 2.94e-13 | 0.43 | AATAAAcgCC.WTTk | AaTAAAsgCC.wTTk | 0.78
XFD-1(M00267), XFD-2(M00268), HFH3(M00289), Freac-7(M00293), HFH8(M00294), FOXP3(M01599) | 7.7e-13 | 0.44 | yawRTAAAYAwwry | yawrTAAAyAwwry | 0.82
RFX(M00975) | 8.94e-12 | 0.45 | syGWTGcs. | [NAME]. | 0.83
Pax-4(M01385), lhx6.1(M01314), Pax-7(M01339), CART1(M01362), S8(M01376), [NAME]), lhx6.1(M01422), Arx(M01423), [NAME]), PMX2A(M01444), CART1(M01453) | 9.66e-11 | 0.45 | w...yTAATTArc.... | ....ytAATTarc.... | 0.71
AP-4(M00176), NeuroD(M01288), MYF(M01302), AP-4(M00175), AP-4(M00927), AP4(M01860) | 1.62e-10 | 0.43 | cwCAGCTGg. | swCAGCkSs. | 0.8
NF-muE1(M00651), REX1(M01695), [NAME]), [NAME]), Nanog(M01123) | 1.96e-10 | 0.44 | CSGCCATCT | CsGCCATCt | 0.78
NKX6.1(M01469), POU6F1(M00465), Oct-6(M01316), LHX3b(M01971), Oct-1(M01354), Dbx-2(M01360), Barx-2(M01431), Nkx6-3(M01470), Nkx6-2(M00489) | 1.98e-10 | 0.44 | ..yaAtTAATkA..yc | ..yaatTAATkr..yc | 0.7
LEF1(M01022), SOX9(M01284), TCF-4(M00671), LEF1,(M00978) | 2.21e-10 | 0.44 | .wwCAAAG.. | ..wCAAAG.. | 0.76
MEF-2D(M02026), SATB1(M02030), MEF-2C(M02025) | 3.18e-10 | 0.45 | wAAATAr | wAAATAr | 0.8
Lentiviral(M00318), HOXD13(M01404) | 5.66e-10 | 0.43 | cAATAAAg | .AATAAAg | 0.77
Homez(M01429) | 8.51e-10 | 0.46 | a.ww.ATCGtTtt.a.. | .....aTCGttt..... | 0.69
Msx-1(M01412), Msx-2(M01393), En-2(M01455), [NAME]) | 2.99e-09 | 0.46 | ....[NAME].. | ....r.yAATTr.... | 0.7
MEF-2(M00941), mef2A(M02024) | 4.62e-09 | 0.45 | rgYTaTwTTWA. | ggYTaTwTTtR. | 0.81
DRI1(M01654), OG-2(M01162), Nkx2-5(M00241), HOXA4(M00640) | 4.99e-09 | 0.45 | AATWAA | RATwAA | 0.79
RFX1(M00281), HIC1(M01073) | 2.71e-08 | 0.46 | ..gk.rc...rGyAAC.. | ..gk.rc...rGcAAC.. | 0.73
NKX6.1(M01489), OTP(M01323), Vsx1(M01335), Lhx5(M01353), PMX2B(M01356), HOXC4(M01369), Alx-4(M01417), HOXD8(M01432), Uncx-4.1(M01458), Lhx3(M01471), Prop-1(M01320), HOXC6(M01406) | 2.71e-08 | 0.45 | ...[NAME] | ....[NAME] | 0.7
FOXO3(M00477), Freac-2(M00290), FOXO1(M00474), FOXO4(M00476) | 3.24e-08 | 0.44 | ..sTTGTTTAC.tw | ...TTGTTTaC.t. | 0.76
STAT1:STAT1(M01212), STAT5A(M00457), STAT3(M01595), STAT1(M01823) | 7.63e-08 | 0.45 | .TTTCcmgGAAra | .TTTCcmgGaAr. | 0.79
dlx5(M01388), HoxB5(M01319), GSH2(M01326), dlx3(M01400), Barx1(M01340), Dlx-1(M01439), Bsx(M01442), Dlx-2(M01468) | 1.35e-07 | 0.45 | ..ggyAATTr.c.... | ..ggyAATTr...... | 0.75
HNF1(M00790), MECP2(M01298), HNF1(M00206) | 1.37e-07 | 0.47 | wggTtAmT.atya.c... | .ggTtamT..ty..c... | 0.66
[NAME]), DMRT1(M01146) | 2.37e-07 | 0.45 | .AwWtTGaTACATTgW | .awwttGmtACAtTgw | 0.8
Oct-1(M00195), [NAME]), Octamer(M00795), Oct-1(M00930) | 2.9e-07 | 0.46 | ....aTGcaAAk.m. | ....atGcaAAk.m. | 0.7
CIZ(M00734), NF-AT4(M01886), IRF-4(M01883), Helios(M01004) | 2.9e-07 | 0.45 | sAAAAAr.. | sAAAAAs.. | 0.78
RFX1(M00626), RFX1(M00280) | 3.05e-07 | 0.45 | mRWYRCyaKGSaAm | mrwyrCyakGsamm | 0.83
E2F(M00918), E2F(M00024), E2F(M00516), E2F(M00919), E2F(M00920), [NAME]), [NAME]) | 3.97e-07 | 0.45 | tTtsGCGsg | yttsGCGss | 0.77
Oct-1(M00248), OCT-x(M00210), POU2F3(M01476), POU3F2(M00464) | 4.82e-07 | 0.46 | t.TATGsTAATT | t.tATGstAATT | 0.76
S8(M00099), Nkx6-1(M00424), HMX1(M01481), [NAME]), Barhl2(M01446) | 4.84e-07 | 0.46 | ......yAATTA.... | ......yaATTA.... | 0.74
Neuro(M01287), [NAME]), [NAME]), E12(M00693) | 5.29e-07 | 0.45 | CAgcTG | CAgcTG | 0.79
REX1(M01696) | 9.06e-07 | 0.45 | gCCATTA | gCCATTa | 0.77
KAISO(M01119) | 1.22e-06 | 0.44 | .TCCTGC.A. | .tCCTGC.a. | 0.78
ELF3(M01977), Elk-1(M00025), c-Ets-1(p54)(M00032), TEL1(M01993), c-Ets-1(M00743), ELF1(M01975), ELF4(M01979), Net(M01982), ER71(M01988), Erm(M01992), GABPalpha(M02039), Spic(M02042), Fli-1(M02038) | 2.47e-06 | 0.46 | .smGGAary. | .smGGAary. | 0.73
IPF1(M01233), IPF1(M01235) | 2.53e-06 | 0.47 | mr.[NAME] | mr.TAAT.rs | 0.79
Zfp206(M01742) | 3.88e-06 | 0.47 | yGCGCAkGCGC | yGCGCakGCgC | 0.74
Cdx-2(M01449), HOXD10(M01375), HOXB8(M01451), HOXB13(M01467) | 4.73e-06 | 0.47 | ...[NAME]... | ...[NAME].... | 0.74
hbp1(M01661) | 5.46e-06 | 0.46 | .TCAATsar | .TCAaTsrr | 0.81
CREB(M00801) | 7.07e-06 | 0.46 | cGTCA. | cGTCA. | 0.76
[NAME]) | 8.76e-06 | 0.46 | .rrGCTCgCc.. | .rrGCTsgCc.. | 0.73
ZNF333(M01230), HOXA13(M01292) | 9.16e-06 | 0.44 | [NAME] | [NAME] | 0.77