Spreadsheet: 412a568c-dbe6-4386-9473-09e672762ad4
Sheet: Sheet1

GEO array names | RFS event | [NAME] months | OS event | OS months | [NAME]. Metastasis Paper 195 microarrays, manuscript in preparation | MetScore (1,2,3) | Used for MetScore SAM (Yes) | Age | ER  (1=positive; 0=negative) | Node status (1=positive=1 or more nodes+; 0=negative) | Grade | Size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin) | Singe Sample Predictor Subtype (S-SSP Subtype assigned according to [NAME]. 2005) | GEO individual microarray Accession number | [NAME] | Target Source 2 (Cy5) | Target source 1 (Cy3)
020573-BC-Primary | 1 | 10 | 0 | 22 | GSE3521 | 3 |  | 41 | 1 | 1 | 3 | 3 | HER2+/ER- | GSM34432 | H1A9529-0087C | Breast primary tumor from a patient with an associated brain metastases, which is 020577-BC-Brain-Met(=73) | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
020577-BC-Brain-Met(=73) | 1 | 10 | 0 | 22 | GSE3521 | 3 | Yes |  |  |  |  |  | HER2+/ER- | GSM34520 | H1A5949-019 | Breast tumor metastasis to the brain associated with a primary tumor, which is 020573-BC-Primary | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030064-BC-Brain-Met | 1 | 51 | 0 | 64 | GSE3521 | 3 | Yes | 32 | 1 | 1 | 2 | 1 | HER2+/ER- | GSM34435 | H1A5365-900 | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030222-Spinal-Met |  |  |  |  | GSE3521 | 3 | Yes | 45 | 1 | 1 |  |  | HER2+/ER- | GSM80213 | H1A6989-8227-V2 | Breast tumor metastasis to [NAME] | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030311-BC-Brain-Met | 1 | 28 | 0 | 51 | GSE3521 | 3 | Yes | 48 | 1 | 0 | 3 |  | LuminalB | GSM80214 | H1A6730-744 | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030432-BC-Brain-Met |  |  |  |  | GSE3521 | 3 | Yes |  |  |  |  |  | LuminalB | GSM34511 | H1A9529-042C | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030432-BC-Brain-Met-Int |  |  |  |  | GSE3521 | 3 |  |  |  |  |  |  | LuminalB | GSM34498 | H1A9529-0001C | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030521-BC-Brain-Met | 1 | 1 | 0 | 22 | GSE3521 | 3 |  |  |  |  |  |  | HER2+/ER- | GSM34453 | H1A7411-0109-C | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
030521-BC-Brain-Met-Int | 1 | 1 | 0 | 22 | GSE3521 | 3 | Yes |  |  |  |  |  | HER2+/ER- | GSM34472 | H1A7411-0110-C | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
982085-BC-Brain-Met | 1 | 1 | 1 | 51 | GSE3521 | 3 | Yes | 61 | 0 |  |  |  | Basal-like | GSM80215 | H1A5365-899 | Breast tumor metastasis to brain | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-000060B | 0 | 52.9972602739726 | 0 | 52.9972602739726 | GSE3521 | 2 | Yes | 79 | 1 | 0 | 2 | 2 | LuminalA | GSM52885 | H1AUNC-1012-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-000094B | 0 | 54 | 0 | 54 | GSE3521 | 1 | Yes | 62 | 1 | 0 | 2 | 1 | LuminalA | GSM52886 | H1AUNC-0995-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-000248B | 0 | 48 | 0 | 48 | GSE3521 | 2 | Yes | 37 | 1 | 1 | 3 | 1 | HER2+/ER- | GSM52887 | H1AUNC-0997-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-000517B | 0 | 42 | 0 | 42 | GSE3521 | 2 | Yes | 44 | 0 | 0 |  | 2 | LuminalB | [NAME] | H1AUNC-1004-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010042B | 0 | 39 | 0 | 39 | GSE3521 | 1 | Yes | 77 | 0 | 0 | 3 | 1 | [NAME]-like | GSM53474 | H1AUNC-0932-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010118B | 0 | 41 | 0 | 41 | GSE3521 | 2 | Yes | 47 | 0 | 1 | 3 | 3 | Basal-like | GSM80216 | H1AUNC-1005-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010130B | 0 | 44 | 0 | 44 | GSE3521 | 1 | Yes | 39 | 0 | 0 | 3 | 2 | Basal-like | GSM80217 | H1AUNC-1006-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010214B | 0 | 37 | 0 | 37 | GSE3521 | 1 | Yes | 57 | 0 | 0 | 3 | 1 | Basal-like | GSM80218 | H1AUNC-1007-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010255B | 0 | 35 | 0 | 35 | GSE3521 | 1 | Yes | 49 | 0 | 0 | 3 | 2 | HER2+/ER- | GSM80219 | H1AUNC-1016-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010384B | 0 | 32 | 0 | 32 | GSE3521 | 2 | Yes | 34 | 0 | 1 | 3 | 2 | Basal-like | [NAME] | H1AUNC-1017-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-010461B | 0 | 32 | 0 | 32 | GSE3521 | 2 | Yes | 59 | 1 | 1 | 1 | 2 | LuminalA | GSM52889 | H1AUNC-0938-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020018B | 0 | 31 | 0 | 31 | GSE3521 | 1 | Yes | 55 | 0 | 0 | 3 | 1 | Basal-like | GSM80221 | H1AUNC-1018-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020025B | 0 | 27 | 0 | 27 | GSE3521 | 1 | Yes | 67 | 1 | 0 | 1 | 2 | LuminalA | GSM52890 | H1AUNC-1019-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020039B | 0 | 32 | 0 | 32 | GSE3521 | 1 | Yes | 37 | 1 | 0 | 3 | 1 | Basal-like | GSM80222 | H1AUNC-1008-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020072B | 0 | 23 | 0 | 23 | GSE3521 | 2 | Yes | 75 | 1 | 0 | 2 | 2 | LuminalA | [NAME] | H1AUNC-1009-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020185B | 0 | 26 | 0 | 26 | GSE3521 | 2 | Yes | 58 | 1 | 1 | 1 | 3 | LuminalA | GSM52892 | H1AUNC-1010-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020310B | 0 | 24 | 0 | 24 | GSE3521 | 2 | Yes | 40 | 1 | 0 | 2 | 3 | LuminalB | GSM52893 | H1AUNC-1011-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020340B | 0 | 6 | 1 | 6 | GSE3521 | 1 | Yes | 80 | 1 | 0 | 3 | 2 | LuminalB | [NAME] | H1AUNC-1014-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020416B | 0 | 23 | 0 | 23 | GSE3521 | 2 | Yes | 75 | 1 | 1 | 3 | 2 | LuminalA | GSM53481 | H1AUNC-1015-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
9830-020461B | 0 | 23 | 0 | 23 | GSE3521 | 2 | Yes | 75 | 1 | 0 | 3 | 2 | LuminalA | GSM52894 | H1AUNC-0933-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A1-10_Adrenal-Met | 1 | 2 | 1 | 2 | GSE3521 | 3 |  |  |  |  |  |  | Basal-like | GSM52910 | H1A6912-6834V2 | Autopsy patient #1 adrenal gland metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A1-17-Left-Primary | 1 | 2 | 1 | 2 | GSE3521 | 3 | Yes | 64 | 0 | 1 | 3 | 4 | Basal-like | GSM34473 | H1A9529-0094C | Autopsy patient #1 breast primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A4-LLL-Lung-Met | 1 | 22 | 1 | 22 | GSE3521 | 3 | Yes | 44 | 1 | 1 | 3 | 4 | Basal-like | GSM34467 | H1A6912-6852V2 | Autopsy patient #4 lung metastasis from breast foci A | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A4-LUL-Lung-Met | 1 | 22 | 1 | 22 | GSE3521 | 3 |  |  |  |  |  |  | Basal-like | GSM34443 | H1A6912-6851V2 | Autopsy patient #4 lung metastasis from breast foci B | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A5-Skin#1-Right-Met | 1 | 26 | 1 | 26 | GSE3521 | 3 |  | 65 | 0 | 1 | 3 | 4 | Basal-like | GSM34468 | H1A6912-6853V2 | Autopsy patient #5 skin metastasis from breast foci A | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A5-Skin-Left-Met | 1 | 26 | 1 | 26 | GSE3521 | 3 | Yes |  |  |  |  |  | Basal-like | GSM34568 | H1A6912-6955V2 | Autopsy patient #5 skin metastasis from breast foci B | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 1 | 1 | 1 | 16 | GSE3521 | 3 | Yes | 53 | 1 | 1 | 3 | 2 | LuminalB | GSM80223 | H1A7871-2410V2 | Autopsy patient #6 liver metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 1 | 1 | 1 | 16 | GSE3521 | 3 |  | 53 | 1 | 1 | 3 | 2 | [NAME]-like | GSM80224 | H1A7871-2411V2 | Autopsy patient #6 lung metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A7-Brain-Met-v2 | 1 | 25 | 1 | 25 | GSE3521 | 3 | Yes | 58 | 0 | 1 | 3 | 2 | Basal-like | GSM52913 | H1A7871-2407V2 | Autopsy patient #7 Brain metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A7-LN-Met | 1 | 25 | 1 | 25 | GSE3521 | 3 |  |  |  |  |  |  | Basal-like | GSM52917 | H1A4594V2 | Autopsy patient #7 [NAME] regional metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A8-Caudaequina-Met | 1 | 1 | 1 | 44 | GSE3521 | 3 | Yes | 46 | 1 | 1 | 2 | 2 | HER2+/ER- | GSM52919 | H1A4956V2_Na | Autopsy patient #8 Caudaequina metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 1 | 1 | 1 | 44 | GSE3521 | 3 |  |  |  |  |  |  | HER+/ER- | GSM52921 | H1A2371V2 | Autopsy patient #8 Lung metastasis from breast | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00004 | 0 | 118 | 0 | 118 | GSE3529 | 1 | Yes | 67 | 0 | 0 | 2 | 1 | LuminalA | GSM34474 | H1A9529-30C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00004-Repeat1 | 0 | 118 | 0 | 118 | GSE3521 | 1 |  |  |  |  |  |  | LuminalA | GSM34439 | H1A6433-2600V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00010 | 1 | 16 | 1 | 16 | GSE3521 | 2 | Yes | 47 | 0 | 1 | 2 | 3 | HER2+/ER- | GSM34558 | H1A9529-39C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00010-Repeat1 | 1 | 16 | 1 | 16 | GSE3521 | 2 |  |  |  |  |  |  | HER2+/ER- | GSM34515 | H1A6433-2601V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00014 | 1 | 18 | 1 | 23 | GSE3521 | 2 | Yes | 69 | 0 | 1 | 3 | 4 | LuminalA | GSM34494 | H1A9529-0045Na_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00014-Repeat1 | 1 | 18 | 1 | 23 | GSE3521 | 2 |  |  |  |  |  |  | HER2+/ER- | GSM34436 | H1A6730-644 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00024T | 1 | 3 | 1 | 3 | GSE3521 | 2 | Yes | 68 | 0 | 1 | 3 | 3 | Basal-like | GSM34559 | H1A_C_0077 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00029T | 0 | 62 | 0 | 62 | GSE3521 | 2 | Yes | 44 | 0 | 1 | 3 |  | Basal-like | GSM34479 | H1A_C_0078 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00030-MET-post chemo | 1 | 8 | 1 | 33 | GSE3521 | 2 | Yes | 58 | 0 | 1 | 2 |  | Basal-like | GSM80225 | H1A6730-647 | Breast Tumor regional metastasis, chemotherapy treated | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00034 | 0 | 81 | 0 | 81 | GSE3521 | 1 | Yes | 68 | 0 | 0 | 2 | 1 | LuminalA | [NAME] | H1A9529-0041C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00036-Repeat1 | 0 | 10 | 0 | 10 | GSE3521 | 2 |  |  |  |  |  |  | HER2+/ER- | GSM34516 | H1A6261-2980V2_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00036T | 0 | 10 | 0 | 10 | GSE3521 | 2 | Yes | 55 | 0 | 1 | 2 | 2 | HER2+/ER- | GSM34488 | H1A_C_0079 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00037 |  |  |  |  | GSE3521 | 2 | Yes | 53 | 0 | 1 | 3 |  | [NAME]-like | GSM80226 | H1A9529-030C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00041 | 1 | 13 | 1 | 29 | GSE3521 | 1 | Yes | 46 | 0 | 0 | 3 | 2 | Basal-like | GSM34534 | H1A9529-039C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00043 | 0 | 76 | 0 | 76 | GSE3521 | 1 | Yes | 43 | 0 | 0 | 3 | 1 | Basal-like | GSM80227 | [NAME] | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00043T |  |  |  |  | GSE3521 | 1 |  | 43 | 0 | 0 | 3 | 2 | Basal-like | GSM34535 | [NAME] | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00048 | 1 | 5 | 1 | 11 | GSE3521 | 1 | Yes | 77 | 0 | 0 | 2 |  | [NAME]-like | GSM80228 | H1A6730-735 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00049T | 1 | 48 | 0 | 72 | GSE3521 | 2 | Yes | 43 | 0 | 1 | 3 | 2 | Basal-like | GSM34536 | H1A_C_0081 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00051 | 0 | 68 | 0 | 68 | GSE3521 | 1 | Yes | 51 | 0 | 0 | 2 | 2 | HER2+/ER- | GSM34563 | H1A9529-0040C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00052-post-chemo | 1 | 14 | 1 | 18 | GSE3521 | 2 | Yes | 47 | 0 | 1 | 3 | 2 | HER2+/ER- | GSM34560 | H1A9529-040C | [NAME], chemotherapy treated | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00052-post-chemo-Int | 1 | 14 | 1 | 18 | GSE3521 | 2 |  |  |  |  |  |  | HER2+/ER- | GSM34471 | H1A6261-2607V2 | [NAME], chemotherapy treated | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00053 | 1 | 27 | 1 | 28 | GSE3521 | 2 | Yes | 71 | 0 | 1 | 3 | 2 | [NAME]-like | GSM34499 | H1A6433-2608V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00055 | 1 | 12 | 1 | 31 | GSE3521 | 2 | Yes | 56 | 0 | 1 | 2 |  | HER2+/ER- | GSM80229 | H1A9529-0088C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00057-post-chemo | 1 | 8 | 1 | 12 | GSE3521 | 2 | Yes | 51 | 0 | 1 | 3 | 4 | HER2+/ER- | GSM34444 | H1A6260-731 | [NAME], chemotherapy treated | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00063 |  |  |  |  | GSE3521 | 3 | Yes | 36 | 0 | 1 | 3 |  | HER2+/ER- | GSM80230 | H1A9529-041C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00063_Repeat1 |  |  |  |  | GSE3521 | 3 |  | 36 | 0 | 1 | 3 |  | HER+/ER- | GSM80231 | H1A7871-2423V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00064-RECUR | 1 | 10 | 1 | 47 | GSE3521 | 2 | Yes | 44 | 0 |  | 3 | 1 | Basal-like | GSM34469 | H1A6357_3552 | Breast Tumor recurrence | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00070 | 1 | 22 | 1 | 25 | GSE3521 | 3 | Yes | 38 | 0 | 0 | 2 | 2 | Basal-like | GSM34538 | H1A9529-0096C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00070-Int | 1 | 22 | 1 | 25 | GSE3521 | 3 |  |  |  |  |  |  | Basal-like | GSM34517 | H1A6433-2610V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00071 | 1 | 16 | 1 | 47 | GSE3521 | 2 | Yes | 33 | 0 | 1 | 2 | 2 | HER2+/ER- | [NAME] | H1A9529-0089C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00074 |  |  |  |  | GSE3521 | 2 | Yes | 78 | 0 | 1 | 2 |  | Basal-like | GSM80232 | H1A9529-0090C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00075 | 1 | 11 | 1 | 11 | GSE3521 | 3 | Yes | 72 | 0 | 1 | 2 |  | [NAME]-like | GSM80233 | H1A7871-2424V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00078T | 0 | 12 | 1 | 12 | GSE3521 | 2 | Yes | 68 | 0 | 1 | 3 | 3 | Basal-like | GSM34551 | H1A4110_3579 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00082T | 1 | 27 | 1 | 27 | GSE3521 | 1 | Yes | 84 | 0 | 0 | 3 | 2 | Basal-like | GSM34552 | H1A4110_3580 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00083 | 1 | 33 | 0 | 36 | GSE3521 | 2 | Yes | 43 | 0 | 1 | 3 |  | Basal-like | GSM80234 | H1A6546-126 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00086 | 0 | 9 | 0 | 9 | GSE3521 | 2 | Yes | 25 | 0 | 1 | 3 |  | Basal-like | GSM80235 | H1A6261-2087V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00094T |  |  |  |  | GSE3521 | 1 | Yes | 51 | 0 | 0 | 3 |  | Basal-like | [NAME] | H1A4110_3582 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BC00097 |  |  |  |  | GSE3521 | 2 | Yes | 40 | 0 | 1 | 3 |  | HER2+/ER- | GSM80237 | H1A9529-0091C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0284 | 0 | 43 | 0 | 43 | GSE3521 | 1 | Yes | 63 | 0 | 0 | 3 | 3 | HER2+/ER- | GSM34425 | H1A6433-2611V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0284-Int | 0 | 43 | 0 | 43 | GSE3521 | 1 |  |  |  |  |  |  | HER2+/ER- | GSM34518 | H1A6433-2987V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0344 | 1 | 7 | 1 | 30 | GSE3521 | 2 | Yes | 65 | 1 | 1 | 3 | 2 | LuminalB | GSM34519 | H1A6433-2598V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0344-Repeat1 | 1 | 7 | 1 | 30 | GSE3521 | 2 |  |  |  |  |  |  | LuminalB | GSM34540 | H1A9529-028C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0365 | 0 | 22 | 0 | 22 | GSE3521 | 2 | Yes | 43 | 1 | 1 | 3 | 4 | LuminalB | GSM34554 | H1A_013Na_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0387 | 1 | 6 | 0 | 51 | GSE3521 | 2 | Yes | 57 | 1 | 1 | 2 | 4 | LuminalA | GSM34541 | H1A9529-025C_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0387-Repeat1 | 1 | 6 | 0 | 51 | GSE3521 | 2 |  |  |  |  |  |  | LuminalA | GSM34470 | H1A6433-2597V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0504 | 0 | 39 | 0 | 39 | GSE3521 | 2 | Yes | 88 | 1 | 1 | 1 | 2 | LuminalA | [NAME] | H1A6433-2988V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0572 | 1 | 11 | 0 | 42 | GSE3521 | 2 | Yes | 45 | 0 | 1 | 3 | 3 | Basal-like | GSM34484 | H1A6433-2599V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0572-Int | 1 | 11 | 0 | 42 | GSE3521 | 2 |  |  |  |  |  |  | Basal-like | GSM34485 | H1A6433-2989V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR00-0587 | 0 | 37 | 0 | 37 | GSE3521 | 1 | Yes | 68 | 1 | 0 | 3 | 2 | LuminalA | GSM34430 | H1A6433-2990V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR01-0125 | 0 | 33 | 0 | 33 | GSE3521 | 2 | Yes | 40 | 1 | 1 | 2 | 3 | LuminalB | GSM34461 | H1A6433-2992V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR01-0246 | 0 | 31 | 0 | 31 | GSE3521 | 2 | Yes | 36 | 1 | 1 | 2 | 2 | LuminalA | GSM34496 | H1A9529-0093C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR01-0349 | 1 | 3 | 1 | 24 | GSE3521 | 2 | Yes | 37 | 1 | 1 | 3 | 3 | LuminalB | [NAME] | H1A9529-0047C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR94-1083 | 1 | 23 | 1 | 47 | GSE3521 | 2 | Yes | 48 | 0 | 1 | 3 | 1 | LuminalA | [NAME] | H1A6912-6957V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR94-1096 | 1 | 31 | 1 | 94 | GSE3521 | 1 | Yes | 82 | 1 | 0 | 1 | 1 | HER2+/ER- | GSM80238 | H1A6912-6958V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR94-187 | 1 | 1 | 1 | 23 | GSE3521 | 3 | Yes | 47 | 1 | 1 | 2 |  | Basal-like | GSM80239 | H1AG4110A_4260 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR95-0017 | 1 | 36 | 1 | 64 | GSE3521 | 2 | Yes | 52 | 1 | 1 | 3 | 2 | LuminalB | GSM34526 | H1A6261-1488V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR95-0035 | 0 | 106 | 0 | 106 | GSE3521 | 2 | Yes | 74 | 0 | 1 | 3 | 2 | LuminalA | GSM34487 | H1A6912-6984V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR95-0152 | 1 | 26 | 0 | 101 | GSE3521 | 1 | Yes | 72 | 1 | 0 | 3 | 4 | HER2+/ER- | [NAME] | H1A6912-6985V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR95-0184 | 0 | 96 | 0 | 96 | GSE3521 | 1 | Yes | 74 | 1 | 0 | 3 | 2 | LuminalB | GSM34462 | H1A6912-6986V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR96-0014 | 0 | 96 | 0 | 96 | GSE3521 | 2 | Yes | 47 | 1 | 1 | 1 | 4 | LuminalA | GSM34463 | H1A6912-6987V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR97-0137 | 1 | 20 | 1 | 21 | GSE3521 | 2 |  | 55 | 0 | 1 | 3 | 3 | Basal-like | GSM34429 | H1A6261-1489V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR97-0137-Int | 1 | 20 | 1 | 21 | GSE3521 | 2 | Yes |  |  |  |  |  | Basal-like | GSM34489 | H1A6261-1490V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR97-1045 | 0 | 31 | 0 | 31 | GSE3521 | 2 | Yes | 44 | 1 | 1 | 2 | 2 | LuminalA | GSM34434 | H1A9529-0048C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR98-0161 | 1 | 36 | 1 | 60 | GSE3521 | 2 | Yes | 57 | 0 | 1 | 2 | 2 | LuminalB | GSM34542 | H1A9529-0049C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR98-0261 | 0 | 65 | 0 | 65 | GSE3521 | 1 | Yes | 44 | 0 | 0 | 3 | 2 | Basal-like | GSM34561 | H1A014Na_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR98-0261-Repeat1 | 0 | 65 | 0 | 65 | GSE3521 | 1 |  |  |  |  |  |  | Basal-like | GSM34545 | H1A9529-0050C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR99-0207 | 0 | 57 | 0 | 57 | GSE3521 | 2 | Yes | 84 | 1 | 1 | 2 | 2 | LuminalA | GSM34546 | H1A7411-0066-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR99-0207-Int | 0 | 57 | 0 | 57 | GSE3521 | 2 |  |  |  |  |  |  | LuminalA | [NAME] | H1A012Na_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR99-0348 | 0 | 32 | 0 | 32 | GSE3521 | 1 | Yes | 85 | 1 | 0 | 2 | 2 | LuminalA | GSM34455 | H1A9529-0051C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
BR99-0348-Int | 0 | 32 | 0 | 32 | GSE3521 | 1 |  |  |  |  |  |  | LuminalA | GSM34456 | H1A7411-0082-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
HCI02-235 |  |  |  |  | GSE3521 | 1 | Yes | 57 | 0 | 0 | 3 | 2 | Basal-like | GSM50135 | H1A9529-0054C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-1 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34490 | H1A6261-2992V2_Na | Normal breast tissue from BD, pool of samples | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-10 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM80240 | H1A9529-0048Na_C | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-2 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34547 | H1A9529-0052C | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-3 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34482 | H1A9529-0095C | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-4 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34441 | H1A6261-2138V2_Na | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-5 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34465 | H1A6261-2139V2_Na | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-6 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34427 | H1A6261-2140V2_Na | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-7 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | [NAME] | H1A9529-0053C | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-8 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34524 | H1A6149-701S02 | Normal breast tissue from an individual | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
Normal-Breast-9 |  |  |  |  | GSE3521 |  |  |  |  |  |  |  | [NAME]-like | GSM34440 | H1A6261-1499V2_Na | Normal breast tissue from [NAME], pool of samples | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB120-LN-Met | 1 | 1 | 1 | 13 | GSE3521 | 3 | Yes | 61 | 0 | 1 | 3 | 2 | Basal-like | GSM34464 | H1A6261-2597V2_Na | Breast Tumor lymph node regional metastasis | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB126 | 1 | 1 | 1 | 16 | GSE3521 | 3 |  | 29 | 0 | 1 | 3 | 4 | Basal-like | GSM34491 | H1A6433-2761_V2 | [NAME], with paired metastasis sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB126-LN-Met | 1 | 1 | 1 | 16 | GSE3521 | 3 | Yes |  |  |  |  |  | Basal-like | GSM34466 | H1A6261-0922V2 | Breast Tumor lymph node regional metastasis, with paired primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 30 | 0 | 30 | GSE3521 | 1 |  | 58 | 0 | 0 | 2 | 2 | Basal-like | [NAME] | H1A6261-0924V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB138-Int | 0 | 30 | 0 | 30 | GSE3521 | 1 | Yes |  |  |  |  |  | Basal-like | GSM34423 | H1A6261-0925V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB149 | 0 | 34 | 0 | 34 | GSE3521 | 1 | Yes | 41 | 1 | 0 | 1 | 2 | [NAME]-like | GSM34555 | H1A7411-0083-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB152-MET-LN | 1 | 31 | 1 | 74 | GSE3521 | 3 | Yes |  | 0 |  |  |  | Basal-like | GSM50148 | H1A6261-2598V2_Na | Breast Tumor lymph node metastasis in opposite breast (distant) | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB155-LN-Met | 0 | 5 | 0 | 5 | GSE3521 | 2 | Yes | 36 | 0 | 1 | 3 |  | Basal-like | GSM80241 | H1A9529-0001Na_C | Breast Tumor lymph node regional metastasis | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB155-MET-LN | 0 | 5 | 0 | 5 | GSE3521 | 2 |  |  |  |  |  |  | Basal-like | GSM80242 | H1A6261-2599V2_Na | Breast Tumor lymph node regional metastasis | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB158 | 0 | 30 | 0 | 30 | GSE3521 | 1 | Yes | 86 | 1 | 0 | 3 | 3 | LuminalB | GSM34457 | H1A9529-0003C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB184 | 0 | 29 | 0 | 29 | GSE3521 | 1 | Yes | 50 | 1 | 0 | 3 | 1 | Basal-like | GSM34562 | H1A7411-0084-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB196-C | 1 | 11 | 1 | 33 | GSE3521 | 3 |  |  |  |  |  |  | Basal-like | GSM80243 | H1A9529-0089Na_C | [NAME], with paired metastasis sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB196-C-LN-Met | 1 | 11 | 1 | 33 | GSE3521 | 3 | Yes |  |  |  |  |  | Basal-like | GSM80244 | H1A9529-0088Na_C | Breast Tumor lymph node regional metastasis, with paired primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB205 | 1 | 1 | 1 | 4 | GSE3521 | 3 | Yes | 39 | 0 | 1 | 2 | 4 | Basal-like | GSM34523 | H1A6433-2610V2_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB232 | 0 | 25 | 0 | 25 | GSE3521 | 1 | Yes |  | 0 | 0 |  |  | Basal-like | [NAME] | H1A6433-2808_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB244 | 0 | 24 | 0 | 24 | GSE3521 | 1 | Yes | 38 | 0 | 0 | 3 | 1 | Basal-like | GSM50149 | H1A9529_0029_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB249 | 0 | 8 | 0 | 8 | GSE3521 | 2 | Yes | 36 | 1 | 1 | 3 | 1 | LuminalB | GSM34458 | H1A9529-0055C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 4 | 0 | 4 | GSE3521 | 2 | Yes | 56 | 1 | 1 | 3 | 2 | LuminalA | GSM34459 | H1A9529-0056C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB258 |  |  |  |  | GSE3521 | 2 |  | 84 | 1 | 1 | 2 | 2 | LuminalA | [NAME] | H1A9529-0057C | [NAME], with paired metastasis sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB258-LN-Met |  |  |  |  | GSE3521 | 2 | Yes |  |  |  |  |  | LuminalA | GSM34564 | H1A7411-0117-C | Breast Tumor lymph node regional metastasis, with paired primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB271 | 0 | 14 | 0 | 14 | GSE3521 | 2 | Yes | 45 | 1 | 1 | 3 | 2 | [NAME]-like | GSM34445 | H1A9529-0058C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 1 | 0 | 1 | GSE3521 | 1 | Yes | 34 | 1 | 0 | 1 | 1 | LuminalA | GSM52895 | H1A9529-0043C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB293 | 0 | 11 | 0 | 11 | GSE3521 | 1 | Yes | 56 | 1 | 0 | 2 | 2 | LuminalB | GSM34447 | H1A9529-0060C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB297 | 0 | 18 | 0 | 18 | GSE3521 | 1 | Yes | 55 | 0 | 0 | 3 | 2 | Basal-like | GSM34565 | H1A9529-0061C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB297-Int | 0 | 18 | 0 | 18 | GSE3521 | 1 |  |  |  |  |  |  | Basal-like | GSM34566 | H1A7411-0112-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB307 | 0 | 9 | 0 | 9 | GSE3521 | 1 | Yes | 35 | 1 | 0 | 3 | 3 | LuminalB | [NAME] | H1A9529-0062C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB311 | 0 | 14 | 0 | 14 | GSE3521 | 2 | Yes | 48 | 1 | 1 | 3 | 3 | LuminalB | GSM34481 | H1A9529-0044C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB314 | 0 | 21 | 0 | 21 | GSE3521 | 2 | Yes | 51 | 0 | 1 | 3 | 3 | HER2+/ER- | GSM34497 | H1A9529-0045C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB334 | 0 | 19 | 0 | 19 | GSE3521 | 1 | Yes | 50 | 0 | 0 | 3 | 1 | Basal-like | GSM34527 | H1A6433-2608V2_Na | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB341 | 0 | 18 | 0 | 18 | GSE3521 | 2 |  | 49 |  | 1 |  |  | [NAME]-like | GSM53476 | H1A7871-2312V2 | [NAME], with paired metastasis sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB341-LN-Met | 0 | 18 | 0 | 18 | GSE3521 | 2 | Yes | 49 |  | 1 |  |  | Basal-like | [NAME] | H1A7871-2313V2 | Breast Tumor lymph node regional metastasis, with paired primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB342 | 0 | 23 | 0 | 23 | GSE3521 | 2 | Yes | 50 |  | 1 |  |  | [NAME]-like | GSM53477 | H1A7871-2315V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 20 | 0 | 20 | GSE3521 | 2 | Yes | 67 | 1 | 1 | 3 | 2 | LuminalA | [NAME] | H1A9529-0063C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB376 | 0 | 15 | 0 | 15 | GSE3521 | 1 | Yes | 50 | 0 | 0 | 3 | 2 | Basal-like | GSM34544 | H1A7411-0114-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB377 | 1 | 18 | 0 | 18 | GSE3521 | 1 | Yes | 77 | 1 | 0 | 3 | 2 | Basal-like | [NAME] | H1A6989-8214-V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB379 | 1 | 15 | 0 | 17 | GSE3521 | 2 | Yes | 55 | 1 | 1 | 3 | 2 | LuminalB | GSM34476 | H1A6989-8215-V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB388 | 0 | 2 | 0 | 16 | GSE3521 | 1 | Yes | 80 | 1 | 0 | 3 | 2 | LuminalA | GSM34505 | H1A6433-2809_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB407 | 1 | 9 | 0 | 17 | GSE3521 | 3 | Yes | 56 | 1 | 1 | 3 | 3 | LuminalB | GSM52883 | H1A6989-8228-V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB412 | 0 | 19 | 0 | 19 | GSE3521 | 1 | Yes | 58 | 0 | 0 | 3 | 2 | Basal-like | GSM34506 | H1A6433-2810_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB412-Int | 0 | 19 | 0 | 19 | GSE3521 | 1 |  |  |  |  |  |  | Basal-like | GSM34507 | H1A6433-2811_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB413 | 0 | 9 | 0 | 9 | GSE3521 | 2 | Yes | 63 | 1 | 1 | 2 | 2 | LuminalA | GSM34508 | H1A6989-8226-V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB419 | 0 | 10 | 0 | 10 | GSE3521 | 1 | Yes |  |  |  |  |  | Basal-like | GSM34477 | H1A6261-2140V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB419-Int | 0 | 10 | 0 | 10 | GSE3521 | 1 |  | 49 | 0 | 0 | 3 | 2 | Basal-like | GSM34478 | H1A6261-2141V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 1 | 15 | 0 | 15 | GSE3521 | 2 | Yes | 79 | 1 | 1 | 3 | 2 | LuminalB | GSM52896 | H1A7411-0115-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB432-repeat1 | 1 | 15 | 0 | 15 | GSE3521 | 2 |  |  |  |  |  |  | LuminalB | GSM52882 | H1A6149-698 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 9 | 0 | 9 | GSE3521 | 1 | Yes | 83 | 1 | 0 | 2 | 1 | LuminalA | GSM34549 | H1A7411-0113-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 1 | 12 | 0 | 23 | GSE3521 | 2 | Yes | 52 | 0 | 1 | 2 | 3 | HER2+/ER- | [NAME] | H1A6433-2812_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB475 | 0 | 2 | 0 | 2 | GSE3521 | 1 | Yes | 50 | 1 | 0 | 2 | 2 | LuminalA | GSM34433 | H1A7411-0116-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
PB479 |  |  |  |  | GSE3521 | 2 | Yes | 52 | 1 | 1 | 3 | 2 | LuminalA | GSM52884 | H1A6433-2978_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] | 0 | 2 | 0 | 2 | GSE3521 | 1 | Yes |  | 0 | 1 | 3 | 3 | Basal-like | GSM50154 | H1A6433-2979_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB21 | 0 | 30 | 0 | 30 | GSE3521 | 1 | Yes | 77 | 1 | 0 | 1 | 1 | LuminalA | GSM34529 | H1A6433-3007_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB29 | 0 | 25 | 0 | 25 | GSE3521 | 1 | Yes | 59 | 0 | 0 | 3 | 2 | Basal-like | GSM34437 | H1A6433-3010_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB37 | 0 | 25 | 0 | 25 | GSE3521 | 2 | Yes | 42 | 0 | 1 | 3 | 1 | HER2+/ER- | GSM34431 | H1A9529-0064C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB38 | 0 | 20 | 0 | 20 | GSE3521 | 1 | Yes | 50 | 1 | 0 | 1 | 1 | LuminalA | GSM34548 | H1A7411-0118-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB39 | 0 | 25 | 0 | 25 | GSE3521 | 1 | Yes | 48 | 1 | 0 | 2 | 1 | LuminalA | [NAME] | H1A6433-3011_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB43 | 0 | 18 | 0 | 18 | GSE3521 | 2 | Yes | 48 | 1 | 1 | 3 | 1 | LuminalA | GSM34556 | H1A6433-2272V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB44 | 0 | 24 | 0 | 24 | GSE3521 | 2 | Yes | 50 | 1 | 1 | 2 | 2 | LuminalA | GSM34428 | H1A6433-2273_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB45 | 0 | 21 | 0 | 21 | GSE3521 | 2 | Yes | 46 | 1 | 1 | 2 | 2 | LuminalA | GSM34531 | H1A6433-2274_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB55 | 0 | 22 | 0 | 22 | GSE3521 | 1 | Yes | 58 | 1 | 0 | 1 | 1 | LuminalA | GSM34567 | H1A7411-0120-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB55-Int | 0 | 22 | 0 | 22 | GSE3521 | 1 |  |  |  |  |  |  | LuminalA | GSM34438 | H1A7411-0121-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB56 | 0 | 9 | 0 | 9 | GSE3521 | 2 | Yes | 63 | 1 | 1 | 2 | 1 | LuminalA | GSM34557 | H1A6261-1499V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB57 | 0 | 17 | 0 | 17 | GSE3521 | 1 | Yes | 60 | 1 | 0 | 2 | 1 | LuminalA | GSM34510 | H1A6261-1500V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB60 | 0 | 20 | 0 | 20 | GSE3521 | 2 | Yes | 72 | 0 | 1 | 3 | 2 | HER2+/ER- | GSM34532 | H1A6433-2275_V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB61 | 0 | 19 | 0 | 19 | GSE3521 | 2 | Yes | 51 | 1 | 1 | 2 | 2 | LuminalA | GSM34553 | H1A9529-0065C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB61-Int | 0 | 19 | 0 | 19 | GSE3521 | 2 |  |  |  |  |  |  | LuminalA | GSM34449 | H1A7411-0107-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB66 | 0 | 9 | 0 | 9 | GSE3521 | 1 | Yes | 88 | 1 | 0 | 1 | 2 | LuminalA | GSM34525 | H1A6989-8211-V2 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB67 | 0 | 16 | 0 | 16 | GSE3521 | 2 | Yes |  |  |  |  |  | Basal-like | GSM34450 | H1A9529-0044Na_C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB67-Repeat1 | 0 | 16 | 0 | 16 | GSE3521 | 2 |  | 80 | 0 | 1 | 3 | 1 | Basal-like | [NAME] | H1A6730-745 | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB69 | 0 | 13 | 0 | 13 | GSE3521 | 1 | Yes | 40 | 1 | 0 | 2 | 1 | LuminalA | GSM34451 | H1A7411-0108-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB71 | 0 | 7 | 0 | 7 | GSE3521 | 1 | Yes | 60 | 0 | 0 | 3 | 1 | Basal-like | GSM34452 | H1A7411-0111-C | Breast Tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB78 | 1 | 1 | 0 | 13 | GSE3521 | 3 |  |  | 1 | 1 |  |  | LuminalB | GSM34512 | H1A6433-2276_V2 | [NAME], with paired metastasis sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
UB78-LN-Met | 1 | 1 | 0 | 13 | GSE3521 | 3 | Yes |  |  |  |  |  | LuminalB | GSM34513 | H1A6433-2757_V2 | Breast Tumor lymph node regional metastasis, with paired primary tumor | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A1-15 Liver Dis.N |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195294 | H1AUNC-1034-C-A1-15DN | Autopsy patient #1 normal liver samples distant to tumor metastasis | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195312 | H1AUNC44K-H1-0385 | Autopsy patient #1 normal breast sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A4-BR-NL |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195313 | H1AUNC44K-H1-0386 | Autopsy patient #4 normal breast sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A5-BR-NL |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195314 | H1AUNC44K-H1-0387 | Autopsy patient #5 normal breast sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A6-LiverAdj-NL-weak |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195315 | H1AUNC44K-H1-0388 | Autopsy patient #6 normal liver samples adjacent to tumor metastasis | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
[NAME] |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | [NAME] | H1AUNC44K-H1-0389 | Autopsy patient #7 normal liver sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs
A8-Liver-NL |  |  |  |  | GSE3521 |  |  |  |  |  |  |  |  | GSM195318 | H1AUNC44K-H1-0593 | Autopsy patient #8 normal liver sample | Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs