Spreadsheet: 0f1f484e-b815-4aad-9d22-501344b38c4a
Sheet: Sheet1

Table S4. Genes underexpressed in arf6-2 arf8-3 and overexpressed in myb21-5 myb24-5 stage 12 flowers, by at least 1.3-fold relative to wild-type flowers. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17
Probe Set ID | stage 12 flower (raw) | sepal (raw) | petal (raw) | stamen (raw) | carpel (raw) | Organ with highest expression in wild-type flowers | Probe Set ID | Columbia, stage12 (raw) | arf6 arf8, stage12 (raw) | [NAME], stage12 (raw) | Columbia, stage13 (raw) | arf6 arf8, stage13 (raw) | [NAME], stage13 (raw) | 2x MeJA-inducible in opr3 stamens? | [NAME] | [NAME] | AGI
263161_at | 3411.8645 | 171.39375 | 72.31779 | 481.67993 | 6003.9907 | carpel | 263161_at | 2440.194 | 686.40967 | 4324.706 | 1334.5648 | 399.42014 | 3073.9138 | 0.5h |  | myrosinase-associated protein, putative | AT1G54020
255786_at | 2426.5713 | 1626.9772 | 807.0366 | 329.37305 | 2873.1797 | carpel | 255786_at | 2284.834 | 859.5618 | 4204.0073 | 1593.2047 | 836.28955 | 3727.0977 | 0.5h |  | coronatine-responsive protein / coronatine-induced protein 1 (CORI1) | AT1G19670
252200_at | 670.2576 | 330.30774 | 215.39282 | 63.5159 | 771.5652 | carpel | 252200_at | 709.4268 | 275.69812 | 1143.409 | 581.5906 | 231.89961 | 939.5551 | 0.5h |  | transferase family protein | AT3G50280
261713_at | 586.22974 | 1306.8334 | 1798.9692 | 833.9445 | 2503.6396 | carpel | 261713_at | 354.3784 | 206.53032 | 524.01886 | 427.08145 | 238.9167 | 697.0075 | 0.5h | bHLH006/RAP1/MYC2 | basic helix-loop-helix (bHLH) protein (RAP-1) | AT1G32640
262616_at | 162.01875 | 137.7443 | 61.826946 | 176.79652 | 251.99675 | carpel | 262616_at | 217.49065 | 49.91329 | 667.10236 | 94.61139 | 43.109863 | 679.7465 | 2h |  | 2-oxoglutarate-dependent dioxygenase, putative | AT1G06620
249817_at | 210.40034 | 67.03247 | 71.55468 | 98.175514 | 163.90077 | carpel | 249817_at | 429.6036 | 160.35815 | 901.4628 | 131.06288 | 103.45715 | 1038.5824 | 2h |  | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | AT5G23820
263320_at | 248.77277 | 174.934 | 169.02803 | 203.53847 | 255.83008 | carpel | 263320_at | 855.2482 | 338.40982 | 2187.9336 | 244.62971 | 392.82712 | 2320.242 | 2h |  | galactinol synthase, putative | AT2G47180
256159_at | 92.10077 | 136.44458 | 50.504757 | 267.74966 | 303.21835 | carpel | 256159_at | 95.106926 | 36.731094 | 233.99504 | 57.062023 | 43.756653 | 239.95447 | 2h | [NAME] | expressed protein | AT1G30135
255527_at | 208.44922 | 53.110886 | 76.26936 | 69.970604 | 436.84372 | carpel | 255527_at | 290.85373 | 112.61309 | 618.51636 | 161.34108 | 95.78732 | 548.7469 | 2h |  | expressed protein | AT4G02360
259878_at | 588.89557 | 82.85945 | 156.05261 | 271.39157 | 480.761 | carpel | 259878_at | 265.4211 | 106.17422 | 631.9378 | 79.0553 | 75.820625 | 578.1176 | 2h |  | O-methyltransferase family 2 protein | AT1G76790
267425_at | 1226.8539 | 1559.1268 | 561.848 | 236.85042 | 1994.4208 | carpel | 267425_at | 1067.5977 | 479.52695 | 1725.1641 | 1146.0485 | 480.29166 | 1525.7949 | 2h |  | FAD-binding domain-containing protein | AT2G34810
259609_at | 2557.5251 | 343.86816 | 928.9507 | 1226.8597 | 3200.9492 | carpel | 259609_at | 2314.1921 | 1059.7391 | 3605.0693 | 1202.0332 | 1023.5008 | 3179.577 | 2h |  | caldesmon-related | AT1G52410
261826_at | 524.73315 | 150.63922 | 266.575 | 462.592 | 546.5744 | carpel | 261826_at | 465.57455 | 216.07129 | 1203.8778 | 254.51799 | 226.70074 | 1413.5863 | 2h |  | pectin methylesterase, putative | AT1G11580
262354_at | 679.26984 | 490.10498 | 550.14087 | 834.96246 | 917.5158 | carpel | 262354_at | 521.3438 | 262.4725 | 933.0201 | 402.28873 | 268.26 | 949.799 | 2h |  | vacuolar ATP synthase subunit E, putative / V-ATPase E subunit, putative / vacuolar proton pump E subunit, putative | AT1G64200
253842_at | 335.25293 | 40.37267 | 9.967101 | 167 | 552.1282 | carpel | 253842_at | 342.46695 | 205.3089 | 535.45984 | 268.55368 | 239.32204 | 732.3658 | 2h |  | integral membrane family protein | AT4G27860
252365_at | 98.61849 | 26.711641 | 40.031082 | 56.825745 | 136.79889 | carpel | 252365_at | 107.616356 | 70.89454 | 189.25468 | 92.14475 | 61.92168 | 188.64519 | 2h |  | cysteine proteinase, putative | AT3G48350
259383_at | 9127.644 | 863.9614 | 1783.3062 | 3519.6475 | 12980.18 | carpel | 259383_at | 6322.2593 | 4714.7124 | 8714.734 | 4162.3555 | 4187.6147 | 8109.306 | 2h |  | [NAME] protein | AT3G16470
257191_at | 384.1073 | 52.734226 | 81.35386 | 2.4629507 | 860.62885 | carpel | 257191_at | 234.38737 | 105.36024 | 320.20178 | 263.02533 | 76.25091 | 201.80138 |  |  | expressed protein | AT3G13175
254663_at | 465.04398 | 87.489174 | 187.66106 | 32.94501 | 832.90137 | carpel | 254663_at | 378.23526 | 201.32764 | 656.7253 | 186.45586 | 89.31418 | 247.78593 |  |  | inward rectifying potassium channel (KAT2) | AT4G18290
258560_at | 117.043335 | 32.191235 | 21.095682 | 34.581596 | 139.7348 | carpel | 258560_at | 186.91362 | 99.33608 | 319.53955 | 154.61838 | 96.25763 | 285.65875 |  |  | expressed protein | AT3G06020
247041_at | 156.21603 | 86.5442 | 70.65669 | 45.1492 | 276.77634 | carpel | 247041_at | 144.14629 | 83.26122 | 245.529 | 138.4647 | 75.39913 | 189.21526 |  | [NAME] | AP2 domain-containing transcription factor, putative | AT5G67180
264052_at | 331.5054 | 297.66995 | 131.17548 | 61.31068 | 431.45383 | carpel | 264052_at | 211.51276 | 123.927574 | 376.9661 | 171.76994 | 150.96013 | 546.09827 |  | CYP79B3 | cytochrome P450, converts trp to IAOx | AT2G22330
251420_at | 77.88474 | 43.822224 | 59.37798 | 39.44048 | 70.20468 | carpel | 251420_at | 58.45579 | 35.718494 | 100.868935 | 43.5473 | 31.043222 | 95.0575 |  |  | AP2 domain-containing transcription factor TINY, putative | AT3G60490
265083_at | 344.181 | 129.87645 | 138.24129 | 61.9881 | 554.44635 | carpel | 265083_at | 429.7977 | 272.43307 | 651.89307 | 533.39404 | 216.84338 | 472.413 |  |  | expressed protein | AT1G03820
263120_at | 1017.4866 | 573.2098 | 192.0622 | 276.28665 | 1637.6528 | carpel | 263120_at | 1142.9175 | 780.551 | 1553.2252 | 1302.9609 | 676.2703 | 1434.5375 |  | CYP708A3 | cytochrome P450 family protein | AT1G78490
247035_at | 834.7336 | 181.23999 | 113.258644 | 271.36386 | 1575.3956 | carpel | 247035_at | 1035.9735 | 735.0132 | 1366.3944 | 1086.912 | 941.25507 | 1510.0625 |  | bHLH073/ALCATRAZ | basic helix-loop-helix (bHLH) family protein | AT5G67110
260028_at | 1305.2783 | 280.0544 | 928.9936 | 197.1728 | 2351.8167 | carpel | 260028_at | 882.5611 | 659.5479 | 1238.181 | 705.83496 | 424.12146 | 832.93134 |  |  | expressed protein | AT1G29980
261033_at | 1068.2242 | 1527.6133 | 3280.6067 | 1711.4218 | 2017.2345 | petal | 261033_at | 755.70294 | 77.77947 | 1600.5846 | 188.27016 | 58.53801 | 1258.3109 | 0.5h | JAZ5 | expressed protein | AT1G17380
250669_at | 1626.209 | 783.60156 | 2654.57 | 271.36002 | 1330.9877 | petal | 250669_at | 1587.299 | 609.2102 | 2653.074 | 887.8655 | 439.8579 | 2438.4077 | 0.5h | PGIP2 | polygalacturonase inhibiting protein 2 (PGIP2) | AT5G06870
260205_at | 2787.118 | 3389.5078 | 3550.7366 | 2604.5806 | 2739.863 | petal | 260205_at | 3109.675 | 1525.18 | 5599.6426 | 1857.6621 | 1725.1299 | 5352.7236 | 0.5h | JAZ9 | expressed protein | AT1G70700
249540_at | 546.0669 | 208.19661 | 2239.6492 | 336.82916 | 165.99347 | petal | 249540_at | 463.46133 | 64.05134 | 948.13214 | 294.96204 | 54.855778 | 924.4899 | 2h | 4CL11 | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein | AT5G38120
255604_at | 4109.143 | 2685.3025 | 5604.7056 | 1660.707 | 2386.1133 | petal | 255604_at | 2633.3782 | 824.63654 | 4488.695 | 1140.2656 | 661.2229 | 3445.327 | 2h |  | expressed protein | [NAME]
258189_at | 977.9494 | 979.645 | 3134.0671 | 1414.1295 | 690.40594 | petal | 258189_at | 1242.4924 | 516.20624 | 1751.6251 | 600.20874 | 426.1467 | 1406.4369 | 2h | JAZ3 | expressed protein | AT3G17860
263031_at | 2440.5518 | 1956.7875 | 3594.3528 | 903.2414 | 2559.3992 | petal | 263031_at | 1834.3256 | 877.3008 | 3483.1738 | 671.43744 | 669.36816 | 2686.82 | 2h |  | glycosyl transferase family 2 protein | AT1G24070
245465_at | 3720.3616 | 2029.4082 | 8535.161 | 2465.994 | 251.0424 | petal | 245465_at | 2923.455 | 1507.5054 | 4851.1333 | 1493.6127 | 610.18726 | 3623.535 | 2h |  | glucosyltransferase-related | AT4G16590
249208_at | 300.63522 | 180.86621 | 707.0612 | 235.25415 | 391.56522 | petal | 249208_at | 278.6593 | 140.33554 | 415.90555 | 199.93987 | 110.61136 | 332.5531 | 2h | AOS | allene oxide synthase (AOS) / hydroperoxide dehydrase / cytochrome P450 74A (CYP74A) | AT5G42650
260547_at | 4296.345 | 1992.1586 | 4191.8794 | 2020.0508 | 3724.3801 | petal | 260547_at | 2617.5862 | 1371.3008 | 5376.719 | 786.32184 | 833.4462 | 3896.3489 | 2h |  | [NAME], putative | AT2G43550
253879_s_at | 2347.1199 | 511.65695 | 2541.8232 | 268.50845 | 1745.3969 | petal | 253879_s_at | 717.2293 | 410.8761 | 1298.4052 | 296.5785 | 193.22844 | 630.5027 | 2h |  | glycosyltransferase family protein | AT4G27560 /// AT4G27570
255805_at | 103.90445 | 40.63057 | 830.2376 | 35.86848 | 12.249913 | petal | 255805_at | 36.43414 | 15.50552 | 115.08341 | 14.616025 | 12.612353 | 46.49638 |  |  | zinc finger (B-box type) family protein | AT4G10240
251141_at | 570.0626 | 357.96362 | 1105.6923 | 378.68896 | 636.6853 | petal | 251141_at | 448.32556 | 205.17097 | 725.5169 | 318.28073 | 115.8364 | 515.04974 |  |  | possible endomembrane beta-galactosidase | AT5G01075
253582_at | 178.99634 | 199.3925 | 998.5654 | 144.28166 | 51.928936 | petal | 253582_at | 216.20137 | 124.193565 | 325.9756 | 159.12743 | 93.97959 | 149.14017 |  |  | expressed protein | AT4G30670
245126_at | 304.69467 | 86.27824 | 543.1651 | 130.41377 | 325.07462 | petal | 245126_at | 199.42033 | 131.40785 | 291.94815 | 135.33905 | 91.2035 | 186.19849 |  | MYB12 | [NAME] family transcription factor (MYB12) | AT2G47460
251427_at | 618.87177 | 581.823 | 990.4753 | 672.2263 | 474.30014 | petal | 251427_at | 376.00403 | 261.1769 | 571.472 | 236.83577 | 218.9646 | 445.98013 |  |  | glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1) | AT3G60130
262180_at | 540.6008 | 234.80757 | 1598.9791 | 468.38443 | 386.8419 | petal | 262180_at | 294.5416 | 203.8283 | 426.68936 | 200.71321 | 166.77019 | 281.0347 |  |  | phosphoglycerate/bisphosphoglycerate mutase family protein | AT1G78050
250793_at | 984.94464 | 2161.1973 | 1652.6752 | 1655.5704 | 681.9985 | sepal | 250793_at | 1101.1825 | 108.59739 | 2470.8293 | 585.00995 | 185.99333 | 2486.9392 | 0.5h |  | oxidoreductase, 2OG-Fe(II) oxygenase family protein | AT5G05600
266901_at | 236.44635 | 801.3083 | 113.0076 | 324.38052 | 236.40527 | sepal | 266901_at | 160.3995 | 30.471642 | 520.3408 | 87.954445 | 48.276325 | 542.0616 | 0.5h | [NAME] | expressed protein | AT2G34600
260429_at | 2570.8066 | 3437.5593 | 1830.4718 | 2802.038 | 2470.6375 | sepal | 260429_at | 2130.0703 | 610.9002 | 3371.427 | 1585.652 | 668.56476 | 3135.2412 | 0.5h | JAZ6 | expressed protein | AT1G72450
247933_at | 133.38934 | 428.26086 | 96.27841 | 128.46199 | 114.47173 | sepal | 247933_at | 151.87453 | 74.86502 | 218.1261 | 173.66663 | 71.32032 | 189.8686 | 0.5h |  | expressed protein | AT5G56980
259518_at | 637.7408 | 2065.2734 | 1278.1333 | 532.60394 | 1240.9788 | sepal | 259518_at | 315.74 | 184.26811 | 649.7935 | 257.85364 | 216.15382 | 494.01016 | 0.5h | 4CL9/OPCL1 | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein | AT1G20510
260399_at | 344.33084 | 1760.4266 | 671.2459 | 481.88037 | 592.9235 | sepal | 260399_at | 209.9731 | 60.164288 | 553.1875 | 65.38554 | 59.83081 | 500.37805 | 2h | LOX4 | lipoxygenase, putative | AT1G72520
256178_s_at | 919.78467 | 1810.8057 | 856.927 | 1274.6559 | 813.5633 | sepal | 256178_s_at | 786.632 | 313.74802 | 1551.9727 | 449.65366 | 345.66873 | 1567.8864 | 2h | IAR3 | IAA-amino acid hydrolase 3 / IAA-Ala hydrolase 3 (IAR3) | AT1G51760 /// AT1G51780
247312_at | 171.39668 | 404.81705 | 198.03691 | 279.06265 | 132.99117 | sepal | 247312_at | 250.44543 | 145.35576 | 332.47495 | 356.65805 | 207.42326 | 447.337 | 2h |  | copine-related | AT5G63970
250960_at | 1842.6371 | 2423.654 | 1618.1862 | 1142.6084 | 1358.4883 | sepal | 250960_at | 872.395 | 511.2782 | 1606.668 | 348.7521 | 509.51978 | 1547.3251 | 2h |  | expressed protein | AT5G02940
252618_at | 12630.651 | 16255.989 | 7529.684 | 9271.507 | 9815.211 | sepal | 252618_at | 7039.9243 | 4635.1777 | 10895.905 | 4157.07 | 3790.166 | 9338.786 | 2h | [NAME] | lipoxygenase (LOX2) | AT3G45140
265530_at | 1980.5752 | 3936.046 | 2117.527 | 943.2972 | 2657.6648 | sepal | 265530_at | 1368.3486 | 652.2688 | 1947.6674 | 937.5239 | 633.9169 | 1932.585 |  | [NAME] | 12-oxophytodienoate reductase ([NAME]) / delayed dehiscence1 (DDE1) | AT2G06050
264415_at | 28.797295 | 81.4591 | 1.3986721 | 3.772114 | 1.8328875 | sepal | 264415_at | 44.874622 | 21.76039 | 197.28401 | 40.062008 | 28.110937 | 588.87506 |  | RAP2.6 | AP2 domain-containing protein RAP2.6 (RAP2.6) | AT1G43160
245422_at | 100.503105 | 176.21657 | 5.753685 | 18.284636 | 20.984543 | sepal | 245422_at | 145.45282 | 71.958275 | 444.56604 | 58.539173 | 58.28744 | 348.61343 |  |  | palmitoyl protein thioesterase family protein | AT4G17470
263032_at | 92.630455 | 102.604164 | 64.05045 | 46.834423 | 90.82983 | sepal | 263032_at | 104.470985 | 58.644367 | 183.55977 | 83.45151 | 55.44546 | 311.18265 |  |  | expressed protein | AT1G23850
262637_at | 1016.2271 | 980.1863 | 851.38934 | 331.5397 | 950.8636 | sepal | 262637_at | 1103.2623 | 663.39154 | 2532.7078 | 484.9191 | 466.6156 | 2507.3887 |  |  | 2-oxoglutarate-dependent dioxygenase, putative | AT1G06640
252199_at | 270.5502 | 305.72598 | 123.29484 | 41.2009 | 276.56522 | sepal | 252199_at | 252.11217 | 168.687 | 508.22256 | 185.55359 | 188.40198 | 455.88956 |  |  | transferase family protein | AT3G50270
253405_at | 31.059214 | 30.62793 | 16.920637 | 9.144872 | 29.404196 | sepal | 253405_at | 129.81358 | 89.21305 | 186.28929 | 127.28361 | 92.28153 | 157.67726 |  |  | AP2 domain-containing transcription factor TINY, putative | AT4G32800
256252_at | 389.0964 | 1801.5856 | 12.847969 | 14.688019 | 7.708517 | sepal | 256252_at | 38.958687 | 27.415197 | 66.28634 | 28.915163 | 28.867235 | 53.56866 |  |  | UDP-glucoronosyl/UDP-glucosyl transferase family protein | AT3G11340
266419_at | 164.45639 | 305.6858 | 52.84338 | 65.58649 | 215.29419 | sepal | 266419_at | 183.83257 | 133.13676 | 394.57886 | 111.82001 | 107.689476 | 322.42014 |  | AnnAt3 | annexin 3 (ANN3) | AT2G38760
262171_at | 1679.2535 | 1505.4591 | 1273.0396 | 2902.4387 | 1846.4244 | stamen | 262171_at | 982.5293 | 698.89496 | 2029.7286 | 666.5009 | 703.61224 | 1791.9088 | 0.5h | [NAME] | expressed protein | AT1G74950
245244_at | 1283.553 | 1149.2928 | 1005.8091 | 2184.8389 | 1035.7689 | stamen | 245244_at | 1239.6329 | 580.8931 | 1885.7646 | 833.5749 | 560.019 | 1486.3121 | 2h | ILL6 | IAA-amino acid hydrolase 6, putative (ILL6) / IAA-Ala hydrolase, putative | AT1G44350
247175_at | 1330.1444 | 489.03555 | 632.022 | 5247.56 | 917.74384 | stamen | 247175_at | 1783.5775 | 869.1429 | 2358.028 | 881.6809 | 608.37054 | 1569.518 | 2h |  | lanthionine synthetase C-like family protein | AT5G65280
266271_at | 94.13266 | 58.184784 | 62.7158 | 207.51839 | 82.69888 | stamen | 266271_at | 100.16248 | 51.4633 | 210.59325 | 90.99622 | 43.42163 | 283.23245 | 2h |  | glutathione S-transferase, putative | [NAME]
258610_at | 616.9891 | 548.23065 | 1186.5387 | 1531.7642 | 482.62186 | stamen | 258610_at | 553.7553 | 382.84903 | 831.3179 | 293.15567 | 384.22043 | 618.3525 | 2h | ILR1 | IAA-amino acid hydrolase 1 (ILR1) - acts on JA as well - best substrate is IAA-PHE | AT3G02875
251770_at | 129.87532 | 120.80038 | 123.53476 | 193.07074 | 85.70185 | stamen | 251770_at | 184.96635 | 56.11371 | 423.32333 | 144.59502 | 54.185352 | 770.34796 | 8h |  | oxidoreductase, 2OG-Fe(II) oxygenase family protein | AT3G55970
261415_at | 3857.9043 | 1918.5488 | 2724.6418 | 7475.2065 | 2503.9534 | stamen | 261415_at | 3519.6448 | 2344.1038 | 5078.4966 | 2508.5413 | 2436.0254 | 4740.6333 |  |  | [NAME] | AT1G07750
260134_at | 115.8808 | 86.312584 | 99.128845 | 175.80786 | 84.73013 | stamen | 260134_at | 176.35168 | 128.15001 | 351.5985 | 132.4486 | 120.81278 | 338.53244 |  | MYB113 | [NAME] family transcription factor (MYB113) | AT1G66370
 | flower organ stage 12 expression data (Schmid et al.)
 | flower organ having highest expression |  |  |  |  |  |  |  | Orange = gene underexpressed in arf6 arf8 mutant flowers by t-test and >1.3-fold | strong green = gene overexpressed in myb21 myb24 mutant flowers by t-test and >1.3-fold |  |  |  | 0.5h = induced by MeJA in opr3 stamens within 30 minutes ([NAME], 2006) | yellow = jasmonate biosynthesis
 | possible organ-specific expression |  |  |  |  |  |  |  |  |  |  |  |  | 2h = induced by MeJA in opr3 stamens within 2 hours ([NAME], 2006) | beige = jasmonate response
 |  |  |  |  |  |  |  |  |  |  |  |  |  | 8h = induced by MeJA in opr3 stamens within 8 hours ([NAME], 2006) | pink= auxin homeostasis
Columns: A,H) Affymetrix ATH1 gene id; B-G) expression in wild-type stage 12 flowers and flower organs [21]; I-N) Gene expression levels in wild-type, arf6-2 arf8-3, and myb21-5 myb24-5 stage 12 and stage 13 flowers, averaged from three replicates (this work); O) genes induced in stamens by MeJA [12]; P-R) gene annotation and AGI number.  To aid in reading the table, cells in some columns are color-coded to indicate genes with particular expression characteristics, according to the keys listed below the corresponding columns.