Spreadsheet: 576fb4a6-1761-4c6c-aae5-5accd0736732
Sheet: Sheet1

Supplemental Table I. General information on miRNA targets and paralogs. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10
>miRNA | Target Gene | [NAME] | [NAME] | Target Site (5'->3') | Strand | Start | End | Coordinate |  | Note
>miR156 | AT1G27370 | SPL10 | SPL | GTGCTCTCTCTCTTCTGTCAA | c | 9505547 | 9505528 | 9505538 |  | Fragment 5': start, end Fragment 3': start, end
>miR156 | AT5G43270 | SPL2 | SPL | GTGCTCTCTCTCTTCTGTCA | c | 17378005 | 17377986 | 17377996
>miR157 | AT1G53160 | SPL4 | SPL | CTGCTCTCTCTCTTCTGTCA | w | 19810758 | 19810777 | 19810767
>miR156 | AT2G33810 | SPL3 | SPL | [NAME] | w | 14312954 | 14312973 | 14312962
>miR159 | AT5G06100 | MYB33 | MYB | TGGAGCTCCCTTCATTCCAAT | w | 1839580 | 1839600 | 1839590
>miR159 | AT3G11440 | MYB65 | MYB | TGGAGCTCCCTTCATTCCAAT | w | 3604157 | 3604177 | 3604167
>miR160 | AT1G77850 | ARF17 | ARF | TGGCATGCAGGGAGCCAGGCA | w | 29279083 | 29279103 | 29279093
>miR160 | AT2G28350 | ARF10 | ARF | AGGAATACAGGGAGCCAGGCA | w | 12122818 | 12122838 | 12122828
>miR160 | [NAME] | ARF16 | ARF | GGGTTTACAGGGAGCCAGGCA | c | 14704167 | 14704147 | 14704157
>miR161 | AT1G06580 |  | PPR | CCCGGATGTAATCACTTTCAG | c | 2015189 | 2015169 | 2015179
>miR162 | AT1G01040 | DCL1 | DCL | CTGGATGCAGAGGTATTATCGA | w | 27521 | exon/intron junction | 27533 |  | 5': 27521, 27535  3': 27619, 27627
>miR163 | AT1G66690 |  | SAMT | ATCGAGTTCCAAGTCCTCTTCAA | c | 24874087 | 24874065 | 24874076
>miR163 | AT1G66700 |  | SAMT | ATCGAGTTCCAAGTCCTCTTCAA | c | 24877992 | 24877970 | 24877981
>miR163 | AT1G66720 |  | SAMT | ATCGAGTTCCAGGTCCTCTTCAA | w | 24885267 | 24885289 | 24885278
>miR163 | AT3G44860 |  | SAMT | ATCGAGTTCCAAGTTTTCTTCAA | w | 16391041 | 16391063 | 16391052
>miR164 | AT1G56010 | NAC1 | NAC | AGCACGTACCCTGCTTCTCCA | c | 20950827 | 20950807 | 20950817
>miR164 | [NAME] | CUC1 | NAC | AGCACGTGTCCTGTTTCTCCA | w | 5111144 | 5111164 | 5111154
>miR164 | AT5G07680 |  | NAC | TTTACGTGCCCTGCTTCTCCA | w | 2436959 | 2436979 | 2436969
>miR164 | AT5G53950 | CUC2 | NAC | AGCACGTGTCCTGTTTCTCCA | c | 21919547 | 21919527 | 21919537
>miR164 | AT5G61430 |  | NAC | TCTACGTGCCCTGCTTCTCCA | c | 24718933 | 24718913 | 24718923
>miR166 | AT1G30490 | PHV | HD-ZipIII | TTGGGATGAAGCCTGGTCCGG | c | 10799428 | exon/intron junction | 10799417 | 10799322 | 5': 10799428, 10799417 3': 10799322, 10799312
>miR166 | AT1G52150 | AtHB15 | HD-ZipIII | CTGGAATGAAGCCTGGTCCGG | c | 19416755 | exon/intron junction | 19416744 | 19416655 | 5': 19416755, 19416744 3': 19416655, 19416645
>miR166 | AT2G34710 | PHB | HD-ZipIII | TTGGGATGAAGCCTGGTCCGG | c | 14649746 | exon/intron junction | 14649735 | 14649619 | 5': 14649746, 14649735 3': 14649619, 14649609
>miR166 | AT5G60690 | REV/IFL1 | HD-ZipIII | CTGGGATGAAGCCTGGTCCGG | w | 24416012 | exon/intron junction | 24416023 | 24416114 | 5': 24416012, 24416023 3': 24416114, 24416124
>miR166 | AT4G32880 | AtHB8 | HD-ZipIII | CTGGGATGAAGCCTGGTCCGG | c | 15863472 | 15863492 | 15863482
>miR167 | AT1G30330 | ARF6 | ARF | GAGATCAGGCTGGCAGCTTG | c | 10686480 | 10686461 | 10686471
>miR167 | AT5G37020 | [NAME] | ARF | TAGATCAGGCTGGCAGCTTG | w | 14651071 | 14651090 | 14651080
>miR168 | AT1G48410 | AGO1 | AGO | TTCCCGAGCTGCATCAAGCTA | c | 17895217 | 17895197 | 17895207
>miR169 | AT1G17590 |  | [NAME] | AAGGGAAGTCATCCTTGGCTG | c | 6050435 | 6050415 | 6050425
>miR169 | AT1G54160 |  | [NAME] | ACGGGAAGTCATCCTTGGCTA | c | 20221181 | 20221161 | 20221171
>miR169 | AT1G72830 | HAP2c | [NAME] | AGGGGAAGTCATCCTTGGCTA | c | 27409320 | 27409300 | 27409310
>miR169 | AT3G05690 | HAP2b | [NAME] | CAGGCAAATCATCTTTGGCTC | c | 1676833 | 1676813 | 1676823
>miR169 | AT5G06510 |  | [NAME] | CAGGCAAATCATCTTTGGCTC | w | 1986750 | 1986770 | 1986760
>miR171 | AT2G45160 | SCL6(II) | SCL | GATATTGGCGCGGCTCAATCA | c | 18626223 | 18626203 | 18626213
>miR171 | AT3G60630 | SCL6(III) | SCL | GATATTGGCGCGGCTCAATCA | c | 22422539 | 22422519 | 22422529
>miR171 | AT4G00150 | SCL6(IV) | SCL | GATATTGGCGCGGCTCAATCA | c | 58431 | 58411 | 58421
>miR172 | AT2G28550‍‍ | TOE1/RAP2.7 | AP2 | CAGCAGCATCATCAGGATTCT | c | 12233330 | 12233310 | 12233320
>miR172 | AT4G36920 | AP2 | AP2 | CTGCAGCATCATCAGGATTCT | w | 17403016 | 17403036 | 17403026
>miR172 | AT5G60120 | [NAME] | AP2 | ATGCAGCATCATCAGGATTCT | w | 24228115 | 24228135 | 24228125
>miR172 | AT5G67180 | TOE3 | AP2 | TGGCAGCATCATCAGGATTCT | c | 26819421 | 26819401 | 26819411
>miR319 | AT1G30210 | TCP24 | TCP | TAGGGGGACCCTTCAGTCCAA | c | 10628993 | 10628973 | 10628983
>miR319 | AT1G53230 | TCP3 | TCP | GAGGGGTCCCCTTCAGTCCAT | c | 19854210 | 19854190 | 19854200
>miR319 | AT2G31070 | TCP10 | TCP | AAGGGGTACCCTTCAGTCCAG | c | 13228307 | 13228287 | 13228297
>miR319 | [NAME] | TCP4 | TCP | GAGGGGTCCCCTTCAGTCCAG | w | 5063307 | 5063327 | 5063317
>miR319 | AT4G18390 | TCP2 | TCP | CAGGGGGACCCTTCAGTCCAA | c | 10163433 | 10163413 | 10163423
>miR393 | AT1G12820 | IPS1 | TIR/F-box | AAACAATGCGATCCCTTTGGA | c | 4369103 | 4369083 | 4369093
>miR393 | AT3G23690 | bHLH077 | bHLH | GGTCAGAGCGATCCCTTTGGC | c | 8530614 | 8530594 | 8530604
>miR393 | AT3G26810 |  | TIR/F-box | AAACAATGCGATCCCTTTGGA | w | 9871475 | 9871495 | 9871485
>miR393 | AT3G62980 | TIR1 | TIR/F-box | AGACAATGCGATCCCTTTGGA | c | 23284722 | 23284702 | 23284712
>miR393 | AT4G03190 | GRH1 | TIR/F-box | AGACCATGCGATCCCTTTGGA | c | 1405361 | 1405341 | 1405351
>miR394 | AT1G27340 |  | F-box | GGAGGTTGACAGAATGCCAA | w | 9497592 | 9497611 | 9497601
>miR395 | AT5G43780 | APS4 | ATP sulfurylase | GAGTTCCTCCAAACACTTCAT | c | 17608368 | 17608348 | 17608358
>miR395 | AT3G22890 | APS1 | ATP sulfurylase | GAGTTCCTCCAAACTCTTCAT | w | 8113171 | 8113191 | 8113181
>miR396 | AT2G22840 | GRF1 | GRF | TCGTTCAAGAAAGCCTGTGGAA | w | 9737024 | 9737045 | 9737035
>miR396 | AT2G36400 | GRF3 | GRF | CCGTTCAAGAAAGCCTGTGGAA | c | 15278845 | 15278824 | 15278834
>miR396 | [NAME] | [NAME] | GRF | ACGTTCAAGAAAGCTTGTGGAA | w | 18753366 | 18753387 | 18753377
>miR396 | AT4G24150 | [NAME] | GRF | TCGTTCAAGAAAGCATGTGGAA | w | 12538659 | 12538680 | 12538670
>miR396 | AT4G37740 | [NAME] | GRF | TCGTTCAAGAAAGCCTGTGGAA | c | 17726419 | 17726398 | 17726408
>miR396 | AT5G53660 | [NAME] | GRF | TCGTTCAAGAAAGCATGTGGAA | w | 21812371 | 21812392 | 21812382
>miR397 | AT2G29130 |  | Laccase | TAATCAATGCTGCACTCAATGA | c | 12533462 | 12533441 | 12533451
>miR397 | [NAME] |  | Laccase | TAGTCAACGCTGCACTTAATGA | w | 15943197 | 15943218 | 15943208
>miR397 | AT5G60020 |  | Laccase | TAATCAATGCTGCACTTAATGA | w | 24186293 | 24186314 | 24186304
>miR398 | AT3G15640 | Cytochrome C oxidase |  | AAGGTGTGACCTGAGAATCACA | w | 5299211 | 5299232 | 529222
>miR398 | AT1G08830 | CSD1 | Copper superoxide dismutase | AAGGGGTTTCCTGAGATCACA | w | 2827179 | exon/intron junction | 2827190 |  | 5': 2827179, 2827194 3': 2827409, 2827415 (2827682, 2827688)
>miR398 | AT2G28190 | CSD2 | Copper superoxide dismutase | TGCGGGTGACCTGGGAAACAT | w | 12022649 | 12022669 | 12022659
>miR399 | AT2G33770 | UBC24 | E2-UBC | GGGCAAATCTCCTTTGGCATT | c | 14288978 | 14288958 | 14288968
>miR403 | AT1G31280 | AGO2 | AGO | GGAGTTTGTGCGTGAATCTAAT | w | 11185204 | 11185225 | 11185215
>miR447 | AT5G60760 |  | 2PGK | CTGACAAACATCTCGTCCCCAA | w | 24458032 | 24458053 | 24458043
>miR472 | AT1G51480 |  |  | GGTATGGGGGGAGTAGGAAAAA |  | 19095946 | 19095967 | 19095957
>miR472 | AT5G43740 |  |  | GGTATGGGGGGAGTAGGAAAAA |  | 17583767 | 17583788 | 17583778
>miR773 | AT4G14140 | MET2 |  | GGAGACAAAAGCTGGAAAGCAAA |  | 8146347 | 8146369 | 8146358
>miR774 | AT3G19890 |  |  | [NAME] |  | 6915703 | 6915723 | 6915713
>miR775 | AT1G53290 | Galactosyl transferase Avr9 elicitor |  | TCGTACTGCTAGATATCGAA |  | 19875841 | 19875860 | 19875850
>miR778 | AT2G22740 | SUVH6 |  | TGGTATACATAAACCAAGCCA |  | 9671119 | 9671139 | 9671129
>miR780 | [NAME] | ATCHX18 |  | ATGTCTGATATTCATGAAGAT |  | 16656561 | 16656541 | 16656551
>miR823 | AT1G69770 | CMT3 |  | GTCTTATATGATCATCACCCT |  | 26255987 | 26256007 | 26255997
>miR824 | AT3G57230 | AGL16 |  | TCTCTTCTCACAAATGGTCTA |  | 21191515 | 21191535 | 21191525
>miR827 | AT1G02860 | SPX |  | TGTTTGTTGATGGTCATCTAA |  | 635400 | 635420 | 635410
>miR828 | AT1G66370 | MYB113 |  | TGGAACACTCATTTGAGTAAGA |  | 24757835 | 24757856 | 24757846
>miR842 | AT5G38550 | JR/MBP |  | GGGATGATGGATCTGAACATGA |  | 15450521 | 15450542 | 15450532
>miR844 | AT5G51270 | PK |  | TTTGATCAGCAATCTTATCATT |  | 20852975 | 20852996 | 20852986
>miR846 | AT5G49850 | JR/MBP |  | CATTCAAGCACTTCGATTCAG |  | 20278406 | 20278426 | 20278416
>miR856 | [NAME] | ATCHX18 |  | GCTGAAGTTATTGGTGGGATTA |  | 16658179 | exon/intron junction | 16658179 |  | 5':16658190, 16658179 3':16658096, 16658087
>miR857 | AT3G09220 | LAC |  | ACACACCTTCAACGTACAAAA |  | 2827243 | 2827263 | 2827253
>miR858 | AT2G47460 | MYB12 |  | AGGGAGAACAGACAACGAAA |  | 19485486 | 19485505 | 19485495
>miR858 | AT3G08500 | MYB83 |  | CAGGTAGAACAGACAACGAGA |  | 2577389 | 2577409 | 2577399
>miR859 | AT3G49510 | F-Box |  | TTTGATTTTACAACAGAGAGA |  | 18365568 | 18365588 | 18365578
>miR173 | AT2G27400 | TAS1a | ta-siRNA | GTGATTTTTCTCTACAAGCGAA | c | 11728982 | 11729003 | 11728993
>miR173 | [NAME] | TAS1b | ta-siRNA | GTGATTTTTCTCAACAAGCGAA | c | 18553232 | 18553253 | 18553243
>miR173 | AT2G39675 | TAS1c | ta-siRNA | GTGATTTTTCTCTACAAGCGAA | c | 16544731 | 16544752 | 16544742
>miR173 | AT2G39681 | TAS2 | ta-siRNA | GTGATTTTTCTCTCCAAGCGAA | c | 16546866 | 16546887 | 16546877
>miR390 | AT3G17185 | TAS3a | ta-siRNA | CUUGUCUAUCCCUCCUGAGCUA
>miR390 | AT5G49615 | TAS3b | ta-siRNA
>miR390 | AT5G57735 | TAS3c | ta-siRNA
>miR828 |  | TAS4 | ta-siRNA
>miR156 | [NAME] | SPL13
Note: for the targets with miRNA binding sites in exon/intron junction, the position of the last nucletotide of 5' cleavage fragment or the actual cleavage site is picked up as the coordinate, depending on whichever occurs first.