Spreadsheet: 5cd54453-9257-4e2b-a581-dfd6423270ea
Sheet: statssubtiwkilevel3.csv

Functional Category | Number genes | RNase III %Up | RNase III %- | RNase III %Down | RNase III Pval | RNase III Summary |  | RNase J1 %Up | RNase J1 %- | RNase J1 %Down | RNase J1 Pval | RNase J1 Summary |  | RNase Y %Up | RNase Y %- | RNase Y %D | RNase Y Pval | RNase Y Summary
Reference for whole genome | 4234 | 9.75436939064714 | 88.8993859234766 | 1.34624468587624 | 1 | . |  | 20.6896551724138 | 70.217288615966 | 9.093056211620219 | 1 | . |  | 18.7765706188002 | 73.9253660840812 | 7.298063297118559 | 1 | .
Cellular processes * cell envelope and cell division * capsule biosynthesis and degradation | 5 | 20 | 80 | 0 | 0.444907155865664 | . |  | 0 | 100 | 0 | 0.748435849161696 | . |  | 0 | 100 | 0 | 0.719486681846057 | .
Cellular processes * cell envelope and cell division * capsule biosynthesis and degradation/ based on similarity | 2 | 0 | 100 | 0 | 0.999999999997615 | . |  | 0 | 100 | 0 | 0.99999999999884 | . |  | 0 | 100 | 0 | 1.00000000000158 | .
Cellular processes * cell envelope and cell division * cell division | 24 | 20.8333333333333 | 79.1666666666667 | 0 | 0.165290859664187 | . |  | 41.6666666666667 | 54.1666666666667 | 4.16666666666667 | 0.0468784682667243 | . |  | 45.8333333333333 | 50 | 4.16666666666667 | 0.00654914579490353 | .
Cellular processes * cell envelope and cell division * cell division/ based on similarity | 1 | 100 | 0 | 0 | 0.111006140765389 | . |  | 0 | 100 | 0 | 1.00000000000098 | . |  | 0 | 100 | 0 | 1.00000000000163 | .
Cellular processes * cell envelope and cell division * cell shape | 8 | 0 | 100 | 0 | 0.999999999993267 | . |  | 37.5 | 62.5 | 0 | 0.478714404029622 | . |  | 62.5 | 37.5 | 0 | 0.0196010726648998 | .
Cellular processes * cell envelope and cell division * cell wall degradation/ turnover | 38 | 7.89473684210526 | 92.1052631578947 | 0 | 1.00000000000069 | . |  | 13.1578947368421 | 52.6315789473684 | 34.2105263157895 | 4.91113262099526e-05 | +Down |  | 10.5263157894737 | 76.3157894736842 | 13.1578947368421 | 0.189429801665711 | .
Cellular processes * cell envelope and cell division * cell wall/ other | 18 | 5.55555555555556 | 88.8888888888889 | 5.55555555555556 | 0.290987557146157 | . |  | 50 | 50 | 0 | 0.0112637543059701 | . |  | 38.8888888888889 | 44.4444444444444 | 16.6666666666667 | 0.0129794015316998 | .
Cellular processes * cell envelope and cell division * cell wall/ other/ based on similarity | 8 | 0 | 100 | 0 | 0.999999999993267 | . |  | 12.5 | 75 | 12.5 | 0.717043798471112 | . |  | 12.5 | 87.5 | 0 | 0.999999999994267 | .
Cellular processes * cell envelope and cell division * cell wall synthesis | 74 | 6.75675675675676 | 93.2432432432432 | 0 | 0.540608440085852 | . |  | 28.3783783783784 | 68.9189189189189 | 2.7027027027027 | 0.054189134515992 | . |  | 51.3513513513513 | 44.5945945945946 | 4.05405405405405 | 9.70190979065865e-10 | +Up
Cellular processes * cell envelope and cell division * membrane dynamics | 2 | 0 | 100 | 0 | 0.999999999997615 | . |  | 0 | 50 | 50 | 0.216379703704775 | . |  | 0 | 50 | 50 | 0.175871007439896 | .
Cellular processes * homeostasis * acquisition of iron | 39 | 0 | 79.4871794871795 | 20.5128205128205 | 7.98759392056355e-09 | +Down |  | 17.9487179487179 | 66.6666666666667 | 15.3846153846154 | 0.366564596489316 | . |  | 7.69230769230769 | 66.6666666666667 | 25.6410256410256 | 0.000396073230957326 | .
Cellular processes * homeostasis * acquisition of iron/ based on similarity | 4 | 0 | 100 | 0 | 0.999999999992666 | . |  | 50 | 50 | 0 | 0.470420390969171 | . |  | 0 | 75 | 25 | 0.397923509396173 | .
Cellular processes * homeostasis * metal ion homeostasis (K, Na, Ca, [NAME]) | 26 | 42.3076923076923 | 57.6923076923077 | 0 | 4.5115354841931e-05 | +Up |  | 30.7692307692308 | 69.2307692307692 | 0 | 0.162914329494274 | . |  | 38.4615384615385 | 61.5384615384615 | 0 | 0.0279029188751342 | .
Cellular processes * homeostasis * pH homeostasis | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 0 | 100 | 0 | 1.00000000000098 | . |  | 0 | 100 | 0 | 1.00000000000163 | .
Cellular processes * homeostasis * trace metal homeostasis (Cu, Zn, Ni, Mn, Mo) | 24 | 12.5 | 87.5 | 0 | 0.802445851354012 | . |  | 16.6666666666667 | 66.6666666666667 | 16.6666666666667 | 0.436475667040927 | . |  | 12.5 | 66.6666666666667 | 20.8333333333333 | 0.0601786664555092 | .
Cellular processes * transporters * ABC transporters | 211 | 15.6398104265403 | 79.1469194312796 | 5.21327014218009 | 2.45259684440525e-06 | +Down |  | 29.3838862559242 | 59.7156398104265 | 10.9004739336493 | 0.00236964939810974 | . |  | 15.6398104265403 | 68.2464454976303 | 16.1137440758294 | 3.10310873608552e-05 | +Down
Cellular processes * transporters * phosphotransferase systems | 28 | 3.57142857142857 | 96.4285714285714 | 0 | 0.670310550524405 | . |  | 28.5714285714286 | 53.5714285714286 | 17.8571428571429 | 0.0853775042785361 | . |  | 14.2857142857143 | 75 | 10.7142857142857 | 0.634968173933826 | .
Cellular processes * transporters * transporters/ other | 195 | 13.3333333333333 | 83.5897435897436 | 3.07692307692308 | 0.020016629252738 | . |  | 33.3333333333333 | 57.948717948718 | 8.71794871794872 | 9.62835172045577e-05 | +Up |  | 25.1282051282051 | 70.25641025641029 | 4.615384615384619 | 0.0383527610750973 | .
Groups of genes * essential genes * NA | 258 | 2.71317829457364 | 96.124031007752 | 1.16279069767442 | 4.24199457759627e-05 | -Up |  | 15.1162790697674 | 82.170542635659 | 2.71317829457364 | 2.98830867596962e-06 | -Down |  | 15.1162790697674 | 81.3953488372093 | 3.48837209302326 | 0.0066809510739451 | .
Groups of genes * GTP-binding proteins * NA | 11 | 0 | 100 | 0 | 0.668846644580056 | . |  | 27.2727272727273 | 72.72727272727269 | 0 | 0.69850494998889 | . |  | 0 | 100 | 0 | 0.205875243585661 | .
Groups of genes * membrane proteins * NA | 1073 | 10.6244175209692 | 87.138863000932 | 2.23671947809879 | 0.00904096099989348 | . |  | 28.5181733457596 | 61.4165890027959 | 10.0652376514445 | 2.97535241443625e-13 | +Up |  | 21.4352283317801 | 68.5927306616962 | 9.97204100652377 | 5.48288180477136e-06 | +Down
Groups of genes * ncRNA * NA | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 0 | 100 | 0 | 1.00000000000098 | . |  | 0 | 100 | 0 | 1.00000000000163 | .
Groups of genes * phosphoproteins * NA | 208 | 7.21153846153846 | 90.3846153846154 | 2.40384615384615 | 0.173088142112895 | . |  | 22.5961538461538 | 62.9807692307692 | 14.4230769230769 | 0.0155822095406234 | . |  | 11.5384615384615 | 75.96153846153851 | 12.5 | 0.000895851360266697 | .
Groups of genes * poorly characterized/ putative enzymes * NA | 213 | 11.7370892018779 | 85.9154929577465 | 2.34741784037559 | 0.207531208651728 | . |  | 19.2488262910798 | 70.4225352112676 | 10.3286384976526 | 0.705531457061519 | . |  | 20.18779342723 | 75.5868544600939 | 4.22535211267606 | 0.192994065402473 | .
Groups of genes * proteins of unknown function * NA | 1035 | 10.2415458937198 | 89.2753623188406 | 0.483091787439614 | 0.0112951990957841 | . |  | 20.9661835748792 | 70.2415458937198 | 8.79227053140097 | 0.91371842496475 | . |  | 17.8743961352657 | 75.7487922705314 | 6.376811594202899 | 0.253389585810091 | .
Groups of genes * pseudogenes * NA | 42 | 4.76190476190476 | 95.2380952380952 | 0 | 0.678885947985375 | . |  | 16.6666666666667 | 83.3333333333333 | 0 | 0.0462727855250821 | . |  | 16.6666666666667 | 83.3333333333333 | 0 | 0.138380042898691 | .
Groups of genes * short peptides * NA | 10 | 0 | 100 | 0 | 0.661350496725411 | . |  | 20 | 60 | 20 | 0.411324775992602 | . |  | 0 | 70 | 30 | 0.0196403461051719 | .
Groups of genes * universally conserved proteins * NA | 30 | 0 | 100 | 0 | 0.160824735162623 | . |  | 0 | 96.6666666666667 | 3.33333333333333 | 0.00153831797959967 | . |  | 3.33333333333333 | 93.3333333333333 | 3.33333333333333 | 0.0350730450424709 | .
Information processing * genetics * DNA condensation/ segregation | 17 | 0 | 100 | 0 | 0.525651891043068 | . |  | 29.4117647058824 | 70.5882352941177 | 0 | 0.407474148717914 | . |  | 29.4117647058824 | 64.7058823529412 | 5.88235294117647 | 0.471037736272547 | .
Information processing * genetics * DNA repair/ recombination | 53 | 9.43396226415094 | 90.56603773584901 | 0 | 1.0000000000108 | . |  | 33.9622641509434 | 62.2641509433962 | 3.77358490566038 | 0.0466043407437026 | . |  | 24.5283018867925 | 75.4716981132076 | 0 | 0.0502009622566954 | .
Information processing * genetics * DNA repair/ recombination/ based on similarity | 16 | 0 | 100 | 0 | 0.512450577020746 | . |  | 37.5 | 56.25 | 6.25 | 0.231881314404483 | . |  | 37.5 | 56.25 | 6.25 | 0.136862056253489 | .
Information processing * genetics * DNA replication | 24 | 0 | 100 | 0 | 0.329700161882381 | . |  | 12.5 | 79.1666666666667 | 8.33333333333333 | 0.628341392217576 | . |  | 29.1666666666667 | 70.8333333333333 | 0 | 0.232817252034192 | .
Information processing * genetics * DNA replication/ based on similarity | 4 | 0 | 100 | 0 | 0.999999999992666 | . |  | 50 | 50 | 0 | 0.470420390969171 | . |  | 25 | 75 | 0 | 0.999999999995578 | .
Information processing * genetics * DNA restriction/ modification | 6 | 0 | 100 | 0 | 0.999999999991836 | . |  | 16.6666666666667 | 83.3333333333333 | 0 | 0.999999999996407 | . |  | 33.3333333333333 | 66.6666666666667 | 0 | 0.588168297425334 | .
Information processing * genetics * DNA restriction/ modification/ based on similarity | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 100 | 0 | 0 | 0.29782711384081 | . |  | 0 | 100 | 0 | 1.00000000000163 | .
Information processing * genetics * genetic competence | 52 | 13.4615384615385 | 86.53846153846149 | 0 | 0.551121244056631 | . |  | 15.3846153846154 | 61.5384615384615 | 23.0769230769231 | 0.00593520631048578 | . |  | 15.3846153846154 | 63.4615384615385 | 21.1538461538462 | 0.00345927399781176 | .
Information processing * genetics * genetics/ other/ based on similarity | 8 | 12.5 | 87.5 | 0 | 0.610209712332356 | . |  | 12.5 | 75 | 12.5 | 0.717043798471112 | . |  | 12.5 | 75 | 12.5 | 0.657563274868827 | .
Information processing * protein synthesis, modification and degradation * chaperone/ protein folding/ based on similarity | 5 | 40 | 60 | 0 | 0.140048984819823 | . |  | 80 | 20 | 0 | 0.0148296766855037 | . |  | 40 | 60 | 0 | 0.498886774287578 | .
Information processing * protein synthesis, modification and degradation * chaperones/ protein folding | 12 | 0 | 100 | 0 | 0.678862584655791 | . |  | 8.33333333333333 | 75 | 16.6666666666667 | 0.292119415477782 | . |  | 0 | 83.3333333333333 | 16.6666666666667 | 0.11773450975497 | .
Information processing * protein synthesis, modification and degradation * protein modification | 90 | 6.66666666666667 | 93.3333333333333 | 0 | 0.434712649602727 | . |  | 27.7777777777778 | 63.3333333333333 | 8.888888888888891 | 0.240855890869197 | . |  | 10 | 82.2222222222222 | 7.77777777777778 | 0.0835825775078135 | .
Information processing * protein synthesis, modification and degradation * protein secretion | 36 | 2.77777777777778 | 91.6666666666667 | 5.55555555555556 | 0.0397297158743413 | . |  | 27.7777777777778 | 66.6666666666667 | 5.55555555555556 | 0.539048513907333 | . |  | 27.7777777777778 | 63.88888888888889 | 8.33333333333333 | 0.324057229507427 | .
Information processing * protein synthesis, modification and degradation * protein secretion/ based on similarity | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 0 | 0 | 100 | 0.09093056211634 | . |  | 0 | 0 | 100 | 0.0729806329712938 | .
Information processing * protein synthesis, modification and degradation * proteolysis | 29 | 20.6896551724138 | 79.31034482758619 | 0 | 0.149039776768889 | . |  | 34.4827586206897 | 65.51724137931029 | 0 | 0.0568217199062357 | . |  | 31.0344827586207 | 68.9655172413793 | 0 | 0.116497164577678 | .
Information processing * protein synthesis, modification and degradation * proteolysis/ based on similarity | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 100 | 0 | 0 | 0.29782711384081 | . |  | 100 | 0 | 0 | 0.260746339159629 | .
Information processing * protein synthesis, modification and degradation * translation | 177 | 3.38983050847458 | 95.4802259887006 | 1.12994350282486 | 0.00572965809861374 | . |  | 10.1694915254237 | 85.8757062146893 | 3.95480225988701 | 6.97441303513824e-06 | -Down |  | 6.77966101694915 | 89.8305084745763 | 3.38983050847458 | 7.47825628815467e-07 | -Up
Information processing * regulation of gene expression * phosphorelay | 39 | 15.3846153846154 | 84.6153846153846 | 0 | 0.43977712081684 | . |  | 25.6410256410256 | 53.8461538461538 | 20.5128205128205 | 0.0242993086619111 | . |  | 10.2564102564103 | 69.2307692307692 | 20.5128205128205 | 0.010481838861846 | .
Information processing * regulation of gene expression * quorum sensing | 22 | 9.090909090909099 | 90.90909090909089 | 0 | 0.999999999991887 | . |  | 18.1818181818182 | 68.1818181818182 | 13.6363636363636 | 0.645265016088877 | . |  | 0 | 77.27272727272731 | 22.7272727272727 | 0.00284150909232262 | .
Information processing * regulation of gene expression * regulators of core metabolism | 8 | 0 | 100 | 0 | 0.999999999993267 | . |  | 37.5 | 37.5 | 25 | 0.0588488712350017 | . |  | 12.5 | 87.5 | 0 | 0.999999999994267 | .
Information processing * regulation of gene expression * RNA binding regulators | 11 | 18.1818181818182 | 81.8181818181818 | 0 | 0.395205945433019 | . |  | 18.1818181818182 | 72.72727272727269 | 9.090909090909099 | 0.999999999989105 | . |  | 0 | 81.8181818181818 | 18.1818181818182 | 0.109162869988471 | .
Information processing * regulation of gene expression * sigma factors and their control | 67 | 7.46268656716418 | 92.5373134328358 | 0 | 0.7519767875308 | . |  | 23.8805970149254 | 71.6417910447761 | 4.47761194029851 | 0.388253438374076 | . |  | 22.3880597014925 | 76.1194029850746 | 1.49253731343284 | 0.133408255223484 | .
Information processing * regulation of gene expression * transcription factors and their control | 322 | 7.7639751552795 | 91.9254658385093 | 0.31055900621118 | 0.104346215974377 | . |  | 27.9503105590062 | 64.90683229813659 | 7.14285714285714 | 0.00386326528319972 | . |  | 14.5962732919255 | 80.1242236024845 | 5.27950310559006 | 0.0314396725276173 | .
Information processing * regulation of gene expression * transition state regulators | 8 | 0 | 100 | 0 | 0.999999999993267 | . |  | 12.5 | 62.5 | 25 | 0.219067637352441 | . |  | 0 | 87.5 | 12.5 | 0.265636229418759 | .
Information processing * regulation of gene expression * trigger enzyme | 16 | 12.5 | 87.5 | 0 | 0.732703167224321 | . |  | 25 | 68.75 | 6.25 | 0.91554778083816 | . |  | 12.5 | 81.25 | 6.25 | 0.905979186496617 | .
Information processing * RNA synthesis and degradation * DEAD-box RNA helicases | 4 | 0 | 100 | 0 | 0.999999999992666 | . |  | 0 | 100 | 0 | 0.713369331162536 | . |  | 25 | 75 | 0 | 0.999999999995578 | .
Information processing * RNA synthesis and degradation * RNA chaperones | 5 | 0 | 100 | 0 | 0.999999999994192 | . |  | 20 | 60 | 20 | 0.429684078118966 | . |  | 0 | 100 | 0 | 0.719486681846057 | .
Information processing * RNA synthesis and degradation * RNase/ based on similarity | 1 | 0 | 100 | 0 | 1.00000000000304 | . |  | 100 | 0 | 0 | 0.29782711384081 | . |  | 0 | 100 | 0 | 1.00000000000163 | .
Information processing * RNA synthesis and degradation * RNases | 20 | 0 | 95 | 5 | 0.112179627197237 | . |  | 10 | 80 | 10 | 0.539376050440867 | . |  | 5 | 85 | 10 | 0.199514212960168 | .
Information processing * RNA synthesis and degradation * transcription | 33 | 6.06060606060606 | 93.939393939394 | 0 | 0.851321214648158 | . |  | 9.090909090909099 | 84.8484848484849 | 6.06060606060606 | 0.204293103943141 | . |  | 15.1515151515152 | 81.8181818181818 | 3.03030303030303 | 0.648706861096862 | .
Lifestyles * coping with stress * acid stress proteins (controlled by [NAME]) | 5 | 20 | 80 | 0 | 0.444907155865664 | . |  | 0 | 80 | 20 | 0.299243407312557 | . |  | 0 | 100 | 0 | 0.719486681846057 | .
Lifestyles * coping with stress * biosynthesis of antibacterial compounds | 52 | 11.5384615384615 | 88.46153846153851 | 0 | 0.822540862786323 | . |  | 7.69230769230769 | 78.8461538461538 | 13.4615384615385 | 0.0342523691223495 | . |  | 0 | 94.2307692307692 | 5.76923076923077 | 7.24879544655173e-05 | -Up
Lifestyles * coping with stress * cell envelope stress proteins (controlled by SigM, W, X, Y) | 129 | 28.6821705426357 | 71.3178294573643 | 0 | 2.26115417764386e-09 | +Up |  | 31.0077519379845 | 66.6666666666667 | 2.32558139534884 | 0.000570302579416001 | . |  | 41.8604651162791 | 54.2635658914729 | 3.87596899224806 | 3.51883641160367e-09 | +Up
Lifestyles * coping with stress * cold stress proteins | 16 | 0 | 100 | 0 | 0.512450577020746 | . |  | 12.5 | 81.25 | 6.25 | 0.840875140068628 | . |  | 12.5 | 75 | 12.5 | 0.498643434649174 | .
Lifestyles * coping with stress * coping with hyper-osmotic stress | 22 | 50 | 50 | 0 | 5.73904061524148e-06 | +Up |  | 36.3636363636364 | 63.6363636363636 | 0 | 0.108820979262967 | . |  | 40.9090909090909 | 59.09090909090911 | 0 | 0.0336959511422331 | .
Lifestyles * coping with stress * coping with hypo-osmotic stress | 4 | 0 | 100 | 0 | 0.999999999992666 | . |  | 50 | 50 | 0 | 0.470420390969171 | . |  | 75 | 25 | 0 | 0.0515551882340431 | .
Lifestyles * coping with stress * general stress proteins (controlled by SigB) | 151 | 13.9072847682119 | 86.09271523178809 | 0 | 0.0868825501814525 | . |  | 11.9205298013245 | 86.09271523178809 | 1.98675496688742 | 9.32390170792364e-06 | -Down |  | 17.8807947019868 | 80.794701986755 | 1.32450331125828 | 0.00383217236116601 | .
Lifestyles * coping with stress * heat shock proteins | 27 | 37.037037037037 | 62.962962962963 | 0 | 0.000464944143877036 | . |  | 37.037037037037 | 62.962962962963 | 0 | 0.0463151562870248 | . |  | 37.037037037037 | 62.962962962963 | 0 | 0.035669099224419 | .
Lifestyles * coping with stress * resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate) | 15 | 13.3333333333333 | 86.6666666666667 | 0 | 0.718068665630524 | . |  | 26.6666666666667 | 66.6666666666667 | 6.66666666666667 | 0.833343054666027 | . |  | 26.6666666666667 | 73.3333333333333 | 0 | 0.59120395108729 | .
Lifestyles * coping with stress * resistance against oxidative and electrophile stress | 55 | 18.1818181818182 | 76.3636363636364 | 5.45454545454545 | 0.00509408622464491 | . |  | 14.5454545454545 | 74.5454545454545 | 10.9090909090909 | 0.514876812282919 | . |  | 34.5454545454545 | 58.1818181818182 | 7.27272727272727 | 0.0117777721742136 | .
Lifestyles * coping with stress * resistance against oxidative and electrophile stress/ based on similarity | 4 | 0 | 100 | 0 | 0.999999999992666 | . |  | 50 | 50 | 0 | 0.470420390969171 | . |  | 25 | 75 | 0 | 0.999999999995578 | .
Lifestyles * coping with stress * resistance against toxic metals | 15 | 46.6666666666667 | 53.3333333333333 | 0 | 0.00068410605695718 | . |  | 26.6666666666667 | 73.3333333333333 | 0 | 0.57863761521466 | . |  | 13.3333333333333 | 86.6666666666667 | 0 | 0.730590673108087 | .
Lifestyles * coping with stress * resistance against toxic metals/ based on similarity | 7 | 14.2857142857143 | 85.7142857142857 | 0 | 0.561447019974344 | . |  | 14.2857142857143 | 57.1428571428571 | 28.5714285714286 | 0.202708047727899 | . |  | 0 | 100 | 0 | 0.494600685259713 | .
Lifestyles * coping with stress * resistance against toxins/ antibiotics | 54 | 22.2222222222222 | 77.7777777777778 | 0 | 0.0176434848816558 | . |  | 50 | 46.2962962962963 | 3.7037037037037 | 5.77686586066989e-06 | +Up |  | 11.1111111111111 | 83.3333333333333 | 5.55555555555556 | 0.312749110012648 | .
Lifestyles * coping with stress * resistance against toxins/ antibiotics/ based on similarity | 45 | 6.66666666666667 | 93.3333333333333 | 0 | 0.793780197624281 | . |  | 46.6666666666667 | 48.8888888888889 | 4.444444444444439 | 0.000365844091696387 | . |  | 28.8888888888889 | 68.8888888888889 | 2.22222222222222 | 0.145360979654776 | .
Lifestyles * coping with stress * toxins, antitoxins and immunity against toxins | 15 | 13.3333333333333 | 86.6666666666667 | 0 | 0.718068665630524 | . |  | 26.6666666666667 | 73.3333333333333 | 0 | 0.57863761521466 | . |  | 13.3333333333333 | 80 | 6.66666666666667 | 0.90461514616195 | .
Lifestyles * coping with stress * toxins, antitoxins and immunity against toxins/ based on similarity | 8 | 12.5 | 87.5 | 0 | 0.610209712332356 | . |  | 12.5 | 87.5 | 0 | 0.856281056938582 | . |  | 12.5 | 62.5 | 25 | 0.154759840796091 | .
Lifestyles * exponential and early post-exponential lifestyles * biofilm formation | 45 | 2.22222222222222 | 97.7777777777778 | 0 | 0.230795877141518 | . |  | 46.6666666666667 | 53.3333333333333 | 0 | 7.07985781709778e-05 | +Up |  | 6.66666666666667 | 86.6666666666667 | 6.66666666666667 | 0.08676423904312 | .
Lifestyles * exponential and early post-exponential lifestyles * genetic competence | 52 | 13.4615384615385 | 86.53846153846149 | 0 | 0.551121244056631 | . |  | 15.3846153846154 | 61.5384615384615 | 23.0769230769231 | 0.00593520631048578 | . |  | 15.3846153846154 | 63.4615384615385 | 21.1538461538462 | 0.00345927399781176 | .
Lifestyles * exponential and early post-exponential lifestyles * motility and chemotaxis | 67 | 8.95522388059701 | 89.55223880597019 | 1.49253731343284 | 0.871561472602864 | . |  | 5.97014925373134 | 43.2835820895522 | 50.7462686567164 | 1.14039327202766e-18 | +Down |  | 8.95522388059701 | 40.2985074626866 | 50.7462686567164 | 2.43148004975734e-21 | +Down
Lifestyles * lifestyles/ miscellaneous * NA | 9 | 44.4444444444444 | 55.5555555555556 | 0 | 0.0170584717432603 | . |  | 33.3333333333333 | 55.5555555555556 | 11.1111111111111 | 0.439157374727432 | . |  | 44.4444444444444 | 55.5555555555556 | 0 | 0.160715994612578 | .
Lifestyles * sporulation * germination | 33 | 3.03030303030303 | 96.969696969697 | 0 | 0.520472568249349 | . |  | 9.090909090909099 | 90.90909090909089 | 0 | 0.0241950576518926 | . |  | 30.3030303030303 | 69.6969696969697 | 0 | 0.0860313405707381 | .
Lifestyles * sporulation * germination/ based on similarity | 5 | 0 | 100 | 0 | 0.999999999994192 | . |  | 0 | 100 | 0 | 0.748435849161696 | . |  | 20 | 80 | 0 | 0.999999999996198 | .
Lifestyles * sporulation * phosphorelay | 39 | 15.3846153846154 | 84.6153846153846 | 0 | 0.43977712081684 | . |  | 25.6410256410256 | 53.8461538461538 | 20.5128205128205 | 0.0242993086619111 | . |  | 10.2564102564103 | 69.2307692307692 | 20.5128205128205 | 0.010481838861846 | .
Lifestyles * sporulation * sporulation/ other | 14 | 14.2857142857143 | 85.7142857142857 | 0 | 0.703963330050623 | . |  | 14.2857142857143 | 78.5714285714286 | 7.14285714285714 | 0.905772205473503 | . |  | 21.4285714285714 | 64.2857142857143 | 14.2857142857143 | 0.33781159086312 | .
Lifestyles * sporulation * sporulation proteins | 348 | 5.17241379310345 | 94.8275862068966 | 0 | 0.000159458729138781 | . |  | 15.2298850574713 | 83.6206896551724 | 1.14942528735632 | 1.75162042157541e-12 | -Down |  | 31.8965517241379 | 67.2413793103448 | 0.862068965517241 | 1.18401286931796e-14 | -Down
Metabolism * additional metabolic pathways * biosynthesis of cell wall components | 56 | 7.14285714285714 | 92.8571428571429 | 0 | 0.838337681429945 | . |  | 30.3571428571429 | 69.6428571428571 | 0 | 0.00755912481913626 | . |  | 55.3571428571429 | 41.0714285714286 | 3.57142857142857 | 3.85460027876318e-09 | +Up
Metabolism * additional metabolic pathways * biosynthesis of cofactors | 108 | 2.77777777777778 | 97.2222222222222 | 0 | 0.0134664218398543 | . |  | 20.3703703703704 | 77.7777777777778 | 1.85185185185185 | 0.0106614735618001 | . |  | 22.2222222222222 | 72.2222222222222 | 5.55555555555556 | 0.56530221572955 | .
Metabolism * additional metabolic pathways * iron metabolism | 50 | 0 | 84 | 16 | 2.74466064143361e-08 | +Down |  | 18 | 70 | 12 | 0.656984961649704 | . |  | 6 | 72 | 22 | 0.000278166428499067 | .
Metabolism * additional metabolic pathways * miscellaneous metabolic pathways | 74 | 10.8108108108108 | 87.8378378378378 | 1.35135135135135 | 0.828353512074846 | . |  | 10.8108108108108 | 79.7297297297297 | 9.45945945945946 | 0.0859042687923317 | . |  | 8.10810810810811 | 87.8378378378378 | 4.05405405405405 | 0.0199213237665825 | .
Metabolism * additional metabolic pathways * phosphate metabolism | 19 | 10.5263157894737 | 89.4736842105263 | 0 | 0.777148599258986 | . |  | 47.3684210526316 | 47.3684210526316 | 5.26315789473684 | 0.0262322383520759 | . |  | 15.7894736842105 | 78.9473684210526 | 5.26315789473684 | 0.999999999986129 | .
Metabolism * additional metabolic pathways * sulfur metabolism | 15 | 6.66666666666667 | 93.3333333333333 | 0 | 0.999999999992504 | . |  | 13.3333333333333 | 73.3333333333333 | 13.3333333333333 | 0.69593682469266 | . |  | 20 | 73.3333333333333 | 6.66666666666667 | 0.999999999990148 | .
Metabolism * amino acid/ nitrogen metabolism * biosynthesis/ acquisition of amino acids | 145 | 26.2068965517241 | 73.7931034482759 | 0 | 1.71905621975429e-08 | +Up |  | 9.6551724137931 | 75.1724137931034 | 15.1724137931034 | 0.000255109677366049 | . |  | 16.551724137931 | 68.9655172413793 | 14.4827586206897 | 0.00755475252588313 | .
Metabolism * amino acid/ nitrogen metabolism * putative amino acid transporter | 5 | 20 | 80 | 0 | 0.444907155865664 | . |  | 20 | 60 | 20 | 0.429684078118966 | . |  | 0 | 100 | 0 | 0.719486681846057 | .
Metabolism * amino acid/ nitrogen metabolism * utilization of amino acids | 70 | 22.8571428571429 | 77.1428571428571 | 0 | 0.00353667151167222 | . |  | 20 | 72.8571428571429 | 7.14285714285714 | 0.905447360360115 | . |  | 20 | 72.8571428571429 | 7.14285714285714 | 0.933846449651789 | .
Metabolism * amino acid/ nitrogen metabolism * utilization of nitrogen sources other than amino acids | 43 | 39.5348837209302 | 60.4651162790698 | 0 | 8.33095010648772e-07 | +Up |  | 16.2790697674419 | 62.7906976744186 | 20.9302325581395 | 0.0424781916049066 | . |  | 25.5813953488372 | 58.1395348837209 | 16.2790697674419 | 0.0245208125596377 | .
Metabolism * carbon metabolism * carbon core metabolism | 54 | 5.55555555555556 | 88.8888888888889 | 5.55555555555556 | 0.0375119691923785 | . |  | 11.1111111111111 | 59.2592592592593 | 29.6296296296296 | 2.90851317981411e-05 | +Down |  | 5.55555555555556 | 74.0740740740741 | 20.3703703703704 | 0.000329216213847684 | .
Metabolism * carbon metabolism * utilization of specific carbon sources | 236 | 5.50847457627119 | 92.7966101694915 | 1.69491525423729 | 0.0478773619166042 | . |  | 28.8135593220339 | 63.135593220339 | 8.05084745762712 | 0.00898138990372684 | . |  | 11.0169491525424 | 80.08474576271189 | 8.89830508474576 | 0.00353291702381882 | .
Metabolism * electron transport and ATP synthesis * ATP synthesis | 14 | 0 | 100 | 0 | 0.492666367869096 | . |  | 0 | 64.2857142857143 | 35.7142857142857 | 0.00354266612447954 | . |  | 0 | 85.7142857142857 | 14.2857142857143 | 0.086445174801247 | .
Metabolism * electron transport and ATP synthesis * electron transport/ other | 18 | 22.2222222222222 | 77.7777777777778 | 0 | 0.175578223548914 | . |  | 22.2222222222222 | 72.2222222222222 | 5.55555555555556 | 0.999999999986395 | . |  | 38.8888888888889 | 61.11111111111111 | 0 | 0.0907861222282865 | .
Metabolism * electron transport and ATP synthesis * electron transport/ other/ based on similarity | 23 | 21.7391304347826 | 78.26086956521739 | 0 | 0.15029807081262 | . |  | 21.7391304347826 | 65.2173913043478 | 13.0434782608696 | 0.615817882162188 | . |  | 21.7391304347826 | 69.5652173913043 | 8.695652173913041 | 0.706369056750988 | .
Metabolism * electron transport and ATP synthesis * regulators of electron transport | 5 | 0 | 100 | 0 | 0.999999999994192 | . |  | 0 | 100 | 0 | 0.748435849161696 | . |  | 20 | 80 | 0 | 0.999999999996198 | .
Metabolism * electron transport and ATP synthesis * respiration | 37 | 5.40540540540541 | 86.4864864864865 | 8.10810810810811 | 0.017203190270438 | . |  | 21.6216216216216 | 64.8648648648649 | 13.5135135135135 | 0.526784998797594 | . |  | 8.10810810810811 | 72.97297297297301 | 18.9189189189189 | 0.0156700506216845 | .
Metabolism * lipid metabolism * biosynthesis of lipids | 44 | 2.27272727272727 | 95.4545454545455 | 2.27272727272727 | 0.138884229716322 | . |  | 22.7272727272727 | 72.72727272727269 | 4.545454545454549 | 0.621154247136508 | . |  | 18.1818181818182 | 79.5454545454545 | 2.27272727272727 | 0.521617839469654 | .
Metabolism * lipid metabolism * lipid metabolism/ other | 12 | 8.33333333333333 | 91.6666666666667 | 0 | 0.999999999987123 | . |  | 41.6666666666667 | 58.3333333333333 | 0 | 0.245227711631027 | . |  | 58.3333333333333 | 41.6666666666667 | 0 | 0.00831186878570573 | .
Metabolism * lipid metabolism * utilization of lipids | 32 | 12.5 | 78.125 | 9.375 | 0.0074804450667943 | . |  | 37.5 | 53.125 | 9.375 | 0.0555327595489128 | . |  | 15.625 | 71.875 | 12.5 | 0.468668359656153 | .
Metabolism * nucleotide metabolism * biosynthesis/ acquisition of nucleotides | 61 | 1.63934426229508 | 80.32786885245899 | 18.0327868852459 | 7.96874598766595e-11 | +Down |  | 9.8360655737705 | 62.29508196721309 | 27.8688524590164 | 2.27700802848582e-05 | +Down |  | 8.196721311475411 | 65.5737704918033 | 26.2295081967213 | 4.61563062977852e-06 | +Down
Metabolism * nucleotide metabolism * metabolism of signalling nucleotides | 11 | 18.1818181818182 | 81.8181818181818 | 0 | 0.395205945433019 | . |  | 27.2727272727273 | 63.6363636363636 | 9.090909090909099 | 0.788194017236173 | . |  | 45.4545454545455 | 54.5454545454545 | 0 | 0.0898806020104164 | .
Metabolism * nucleotide metabolism * nucleotide metabolism/ other | 5 | 0 | 100 | 0 | 0.999999999994192 | . |  | 20 | 80 | 0 | 1.0000000000009 | . |  | 0 | 100 | 0 | 0.719486681846057 | .
Metabolism * nucleotide metabolism * utilization of nucleotides | 21 | 0 | 100 | 0 | 0.442723465740928 | . |  | 66.6666666666667 | 33.3333333333333 | 0 | 2.15464023763417e-05 | +Up |  | 47.6190476190476 | 52.38095238095239 | 0 | 0.00642105281633773 | .
Prophages and mobile genetic elements * mobile genetic elements/ based on similarity * NA | 3 | 0 | 100 | 0 | 0.999999999996622 | . |  | 0 | 100 | 0 | 0.999999999998207 | . |  | 0 | 100 | 0 | 1.0000000000012 | .
Prophages and mobile genetic elements * mobile genetic elements * NA | 10 | 0 | 100 | 0 | 0.661350496725411 | . |  | 0 | 100 | 0 | 0.154767324625071 | . |  | 0 | 100 | 0 | 0.350238802507592 | .
Prophages and mobile genetic elements * prophages * PBSX prophage | 38 | 13.1578947368421 | 86.8421052631579 | 0 | 0.653486549793969 | . |  | 0 | 18.4210526315789 | 81.578947368421 | 7.89669630877312e-27 | +Down |  | 92.1052631578947 | 7.89473684210526 | 0 | 5.63689160551883e-22 | +Up
Prophages and mobile genetic elements * prophages * phage-related functions | 2 | 0 | 100 | 0 | 0.999999999997615 | . |  | 0 | 0 | 100 | 0.00824883908638203 | . |  | 0 | 50 | 50 | 0.175871007439896 | .
Prophages and mobile genetic elements * prophages * Skin element | 63 | 9.52380952380952 | 90.4761904761905 | 0 | 1.00000000001466 | . |  | 7.93650793650794 | 87.3015873015873 | 4.76190476190476 | 0.00833908740709333 | . |  | 11.1111111111111 | 88.8888888888889 | 0 | 0.00658369107256977 | .
Prophages and mobile genetic elements * prophages * SP-beta prophage | 186 | 3.76344086021505 | 94.6236559139785 | 1.61290322580645 | 0.00807343473708146 | . |  | 6.451612903225799 | 88.7096774193548 | 4.83870967741935 | 4.99680753247858e-09 | -Up |  | 6.451612903225799 | 83.3333333333333 | 10.2150537634409 | 4.25925034414859e-06 | -Up