Spreadsheet: 0b9ff96b-4cc8-4187-9801-f817a8897361
Sheet: Sheet1

Supplementary table 1: Unique repeats found in [NAME], STIV, TFV, EHNV, and ATV | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20
 | FV3 |  |  |  | STIV |  |  |  | TFV |  |  |  | EHNV |  |  |  | ATV
Sequence | Indices | Period size | Copy number | Match identity | Indices | Period size | Copy number | Match identity | Indices | Period size | Copy number | Match identity | Indices | Period size | Copy number | Match identity | Indices | Period size | Copy number | Match identity
UNIQUE REPEATS
ggacct ccg | 22955--22988 | 9 | 3.8 | 96
agtcttccg gag | 19862--19890 | 12 | 2.4 | 100
tacta ttgtaagat | 11486--11527 | 14 | 3 | 96
aatatat tatctctc | 84594--84624 | 15 | 2.1 | 100
gtctgag gcagaata | 75384--75453 | 15 | 4.7 | 100
cttaag atagtaaaga | 100295--100383 | 16 | 5.6 | 100
cct gcggcgggtc tccca | 95418--95484 | 18 | 3.7 | 100
ccccaacg ggacatcgca gag | 39863--39949 | 21 | 4.1 | 100
[NAME] | 96967--97130 | 21 | 7.8 | 97
tcagg ctgcgcttgc tgctgccgt | 54876--54956 | 24 | 3.4 | 100
aga aagtctccat ctaggtctcc agtg | 39128--39193 | 27 | 2.4 | 100
gctg gtgcagctgg [NAME] agacagaggt gggcttgaag ggtgtaaatc ctgtaaaggc [NAME] ctggtgctgg tgtagctggt gctggtgta | 51217--51443 | 123 | 1.8 | 99
gca gga |  |  |  |  | 43198--43222 | 6 | 4.2 | 100
g aggtgagtat |  |  |  |  | 99849--99882 | 11 | 3.1 | 100
tactatag taagat |  |  |  |  | 11243--11282 | 14 | 2.9 | 100
gcgggtc tcccacctgc g |  |  |  |  | 95254--95296 | 18 | 2.4 | 100
[NAME] gcagtcact |  |  |  |  | 51139--51188 | 21 | 2.4 | 100
cgtcctgctc agcagcagca c |  |  |  |  | 96781--96922 | 21 | 6.8 | 100
ggac ctccgggacc tccgggtcct cct |  |  |  |  | 22667--22718 | 27 | 1.9 | 96
tctct ggcgagagag tctttgggga gagaa |  |  |  |  | 93066--93178 | 30 | 3.8 | 98
agaaagtctc ccagaaagtc tccagcagcc aaactccaag ctggagatag accagcttcc atgaacattt gcaagaatct gcccaagcag aggctggtgg acattgccac agagatggga atagacctga acagagagtc agacggtaaa ccaaagacca aagaccagct gtgcgcagat atcatgggag gcgctgggag [NAME] |  |  |  |  | 38641--39108 | 222 | 2.1 | 100
cctcctcag |  |  |  |  |  |  |  |  | 53282--53317 | 9 | 4 | 100
c gacggggt |  |  |  |  |  |  |  |  | 72830--72868 | 9 | 4.3 | 96
[NAME] gctctt |  |  |  |  |  |  |  |  | 53318--53449 | 9 | 14.7 | 100
aagt ctccatcc |  |  |  |  |  |  |  |  | 37197--37229 | 12 | 2.8 | 100
cgggagtg ataa |  |  |  |  |  |  |  |  | 103293--103350 | 12 | 4.8 | 100
ttca gaagattctc t |  |  |  |  |  |  |  |  | 64137--64173 | 15 | 2.5 | 95
ctccacat ctttact |  |  |  |  |  |  |  |  | 69173--69213 | 15 | 2.7 | 96
tctta agctaatagt a |  |  |  |  |  |  |  |  | 58996--59037 | 16 | 2.6 | 96
tatcttaaga tattac |  |  |  |  |  |  |  |  | 76731--76773 | 16 | 2.7 | 100
gt [NAME] |  |  |  |  |  |  |  |  | 94009--94047 | 18 | 2.2 | 100
gcaacgc cctgctcagc agcctca |  |  |  |  |  |  |  |  | 95563--95731 | 24 | 7.2 | 96
aa gtctccatcc aagtctccag ctgggaga |  |  |  |  |  |  |  |  | 37209--37276 | 30 | 2.3 | 100
tagcgagag ggtctttggg gagagaatct c |  |  |  |  |  |  |  |  | 91832--91910 | 30 | 2.6 | 100
ggagt gggaggagtg gagggagtga gaggagtgag a |  |  |  |  |  |  |  |  | 96--219 | 36 | 3.4 | 95
ggtga cttactcttc acaggggtct tacgcttcac t |  |  |  |  |  |  |  |  | 50996--51279 | 36 | 7.9 | 96
[NAME] [NAME] aaaatcttaa gatagtcgta gag |  |  |  |  |  |  |  |  | 98920--99065 | 63 | 2.4 | 96
tccacattt ttactctcct aaaccattat agtgagatac tttctgagag ataatacatc ttac |  |  |  |  |  |  |  |  | 62882--63108 | 63 | 3.6 | 98
[NAME] [NAME] |  |  |  |  |  |  |  |  | 64295--64463 | 84 | 2 | 97
ctggtgcctg tccaaaggat gggaagacag aggtaggctt gaagggtgta aatcctgtaa aggctggtgc ctttgcagtc actgcttgtg |  |  |  |  |  |  |  |  | 49831--50006 | 90 | 2 | 100
agaaa [NAME] cagccaaact [NAME] cttccatgaa catttgcaag aatctgccca aacagaggct ggtggacatt [NAME] gtaaaccaaa [NAME] cagatatcat gggaggcgct gggagaaagt ctccc |  |  |  |  |  |  |  |  | 37266--37708 | 210 | 2.1 | 100
cccaggggt |  |  |  |  |  |  |  |  |  |  |  |  | 89672--89707 | 9 | 4 | 100
ctcagg ctg |  |  |  |  |  |  |  |  |  |  |  |  | 102485--102558 | 9 | 8.200000000000001 | 95
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 118974--119011 | 10 | 3.8 | 96
atactca cctc |  |  |  |  |  |  |  |  |  |  |  |  | 18464--18508 | 11 | 4.1 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 101362--101389 | 11 | 2.5 | 100
gcagacac cacg |  |  |  |  |  |  |  |  |  |  |  |  | 6073--6100 | 12 | 2.3 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 86862--86890 | 12 | 2.4 | 100
tacga tagtatc |  |  |  |  |  |  |  |  |  |  |  |  | 105196--105229 | 12 | 2.8 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 48184--48208 | 13 | 1.9 | 100
ataaagtctt aag |  |  |  |  |  |  |  |  |  |  |  |  | 111021--111045 | 13 | 1.9 | 100
tgaga gaaggtct |  |  |  |  |  |  |  |  |  |  |  |  | 4836--5051 | 13 | 16.6 | 98
tactatcgt aaga |  |  |  |  |  |  |  |  |  |  |  |  | 65032--65063 | 13 | 2.5 | 95
gtct taagataaa |  |  |  |  |  |  |  |  |  |  |  |  | 110916--110949 | 13 | 2.6 | 95
tactatctc aagat |  |  |  |  |  |  |  |  |  |  |  |  | 25762--25802 | 14 | 2.9 | 100
ag atctttatcc tg |  |  |  |  |  |  |  |  |  |  |  |  | 85669--85770 | 14 | 7.3 | 98
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 105--175 | 15 | 4.7 | 100
[NAME] ggagtgggt |  |  |  |  |  |  |  |  |  |  |  |  | 225--262 | 15 | 2.5 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 9005--9062 | 15 | 3.9 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 27595--27674 | 15 | 5.3 | 100
t ctttcctgag actt |  |  |  |  |  |  |  |  |  |  |  |  | 34960--35016 | 15 | 3.8 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 35291--35405 | 15 | 7.7 | 100
aat cttctgaaag ag |  |  |  |  |  |  |  |  |  |  |  |  | 58968--58996 | 15 | 1.9 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 82925--82953 | 15 | 1.9 | 100
gtctccagtg agaaa |  |  |  |  |  |  |  |  |  |  |  |  | 87431--87469 | 15 | 2.6 | 100
tct cgcaggagac tt |  |  |  |  |  |  |  |  |  |  |  |  | 113588--113741 | 15 | 10.3 | 100
t gctggtgcag ctgg |  |  |  |  |  |  |  |  |  |  |  |  | 98810--98896 | 15 | 5.8 | 97
ctatcagaag atatta |  |  |  |  |  |  |  |  |  |  |  |  | 121251--121568 | 16 | 19.9 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 122418--122714 | 16 | 18.6 | 100
tgtgat agcagtatcc |  |  |  |  |  |  |  |  |  |  |  |  | 124235--124371 | 16 | 8.600000000000001 | 100
tatc ttacgatagt ag |  |  |  |  |  |  |  |  |  |  |  |  | 28857--29424 | 16 | 35.4 | 99
a catctcaaga taagat |  |  |  |  |  |  |  |  |  |  |  |  | 14430--14701 | 17 | 16 | 100
tct gagagaatac aaac |  |  |  |  |  |  |  |  |  |  |  |  | 98338--98392 | 17 | 3.2 | 100
agactt tatatctctc a |  |  |  |  |  |  |  |  |  |  |  |  | 124515--124657 | 17 | 8.4 | 98
tcttctgaa agaaatata |  |  |  |  |  |  |  |  |  |  |  |  | 25082--25203 | 18 | 6.8 | 100
gtca  tcagacggca ctca |  |  |  |  |  |  |  |  |  |  |  |  | 25437--25554 | 18 | 6.6 | 100
tgccggtga ctgtctcct |  |  |  |  |  |  |  |  |  |  |  |  | 113942--113983 | 18 | 2.3 | 100
a gaaagtctcc cgctgcg |  |  |  |  |  |  |  |  |  |  |  |  | 87120--87205 | 18 | 4.8 | 98
ag agagtatagg agagat |  |  |  |  |  |  |  |  |  |  |  |  | 88059--88102 | 18 | 2.4 | 96
gac [NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 100348--100409 | 18 | 3.4 | 95
tagagtat cttaagatag t |  |  |  |  |  |  |  |  |  |  |  |  | 41743--41971 | 19 | 12.1 | 99
[NAME] tgctgg |  |  |  |  |  |  |  |  |  |  |  |  | 21566--21627 | 21 | 3 | 100
agcga gagatggtcg aggcga |  |  |  |  |  |  |  |  |  |  |  |  | 84376--84447 | 21 | 3.4 | 100
caaag ggagacgcgg gtctccccgg ag |  |  |  |  |  |  |  |  |  |  |  |  | 14966--15029 | 27 | 2.4 | 100
gctgc tgctcctctt gctgttccac aacagcctcc tcag |  |  |  |  |  |  |  |  |  |  |  |  | 102556--102730 | 39 | 4.5 | 100
gacaagag [NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 73743--73849 | 40 | 2.6 | 97
[NAME] tctcatacaa tc |  |  |  |  |  |  |  |  |  |  |  |  | 119741--119850 | 42 | 2.6 | 97
tctt tctcgctaag attttatctc tcagatcttt atctctctca ga |  |  |  |  |  |  |  |  |  |  |  |  | 73977--74108 | 46 | 2.8 | 95
[NAME] tgagaactta tcttgagaga ta |  |  |  |  |  |  |  |  |  |  |  |  | 119485--119623 | 59 | 2.4 | 96
[NAME] cttaagataa atctttagac ataatatctt tagatagaaa tctttactct cattcccttt cagtcta |  |  |  |  |  |  |  |  |  |  |  |  | 69986--70143 | 72 | 2.2 | 100
atatcttgt gatactatta tctttcagac tatatcttat  gagaacttat cttgagagat [NAME] |  |  |  |  |  |  |  |  |  |  |  |  | 119542--119682 | 75 | 1.9 | 100
tatc [NAME] tttactctcc ttaaagttcg agagagtaaa agtatcttat gatagtaatc ttaaagctaa ta |  |  |  |  |  |  |  |  |  |  |  |  | 41957--42167 | 86 | 2.5 | 99
at tttaggataa gaaggagatg tagcaacatt tatagaatct ataaatgtgg atgtctttag tctctttcag  aagactttat cttaagat |  |  |  |  |  |  |  |  |  |  |  |  | 10549--10752 | 90 | 2.3 | 97
agattccta taaatgttgg tacatctcct tcttgtcctg aaactttgtg agataaagtc ttgagagaga atatcttctg aaagagatct taagatatcc acatttat |  |  |  |  |  |  |  |  |  |  |  |  | 37682--37934 | 106 | 2.4 | 98
tctttcagag agaa |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 34561--34592 | 14 | 2.3 | 100
g cactaactgc tgga |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 82360--82388 | 15 | 1.9 | 100
agtat cttaagataa t |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 55346--55405 | 16 | 3.8 | 97
a tatcttctga aataat |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 93400--93437 | 17 | 2.2 | 95
tctta agatagttag agta |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 34606--34656 | 19 | 2.7 | 96
tgc tggagcacta actgctgg |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 82368--82412 | 21 | 2.1 | 100
[NAME] |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 70925--70994 | 21 | 3.3 | 97
c tcctgctgct gctctgcagg |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 86210--86308 | 21 | 4.7 | 100
tgctg ctgctggaca gggcgt |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 17946--18125 | 21 | 8.6 | 97
agaaag tctccagtta gatcccct |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 70275--70321 | 24 | 1.9 | 95
aggtggatgg ctgtgctggt tcaaacatgg agg |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 82241--82339 | 33 | 3 | 100
[NAME] aactgctggt gcagctggtg ctggtgca |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 82384--82559 | 45 | 3.9 | 96
gagaa agtctcctgc taggtctccg agaaggtctc catccaagtc tcc |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 69416--69559 | 48 | 3 | 100
ccagtta gatcccctag aaagtctcca gtgagaaagt ctccagttag atcc |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 70194--70297 | 51 | 2 | 96
gctgctg ctgctggaca gggcgttgct gctgctgcac agggcgttgc tgctgctgca cagggc |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 17944--18125 | 63 | 2.9 | 97
gagaa ggtctccatc caagtctcca gctgtaagaa agtctcccgc tgggagaaag [NAME] [NAME] |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 69536--69763 | 78 | 2.9 | 99
agaaagtc tcctagaaag tctcccgctg tgagaaagtc tccagcagcc aaactccaag ccggagatag accagcttcc atgaacattt gcaagaatct gcccaagcag aggctggtgg acattgccac agagatggga atagacctga acagagagtc agacggtaaa ccaaagacca aagaccagct gtgcgcaaat atcatgggag gtgctggg |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 69753--70195 | 216 | 2.1 | 100