Spreadsheet: decfbaec-be38-4f64-9fb4-93c491673b3e
Sheet: Sheet1

Table S3. Overrepresented GO terms in upregulated genes in the h2a.z mutant | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5
GO Term ID | GO Term | Fold Enrichment | P-value | [NAME] | %
GO:0010033 | response to organic substance | 1.82309732193272 | 6.91638469715881e-14 | 155 | 8.61111111111111
GO:0009611 | response to wounding | 3.66971848027748 | 2.36321031011266e-12 | 39 | 2.16666666666666
GO:0009414 | response to water deprivation | 3.30082195472511 | 1.23486273425261e-11 | 42 | 2.33333333333333
GO:0006955 | immune response | 2.6908699699173 | 1.26693305808738e-11 | 57 | 3.16666666666666
GO:0009415 | response to water | 3.21500908022647 | 1.69527189809952e-11 | 43 | 2.38888888888888
GO:0010200 | response to chitin | 3.59414584046559 | 2.62706178204279e-10 | 33 | 1.83333333333333
GO:0009628 | response to abiotic stimulus | 1.66400190198817 | 5.68672029151802e-10 | 144 | 8
GO:0009737 | response to abscisic acid stimulus | 2.52373621801539 | 1.20061215430576e-09 | 52 | 2.88888888888888
GO:0006952 | defense response | 1.70550097854867 | 1.6087819885195e-09 | 127 | 7.05555555555555
[NAME] | response to carbohydrate stimulus | 2.84981230261981 | 2.43924094392987e-09 | 41 | 2.27777777777777
GO:0045087 | innate immune response | 2.46461372619475 | 8.55065118936566e-09 | 49 | 2.72222222222222
GO:0009617 | response to bacterium | 2.49429793300071 | 3.83360345862709e-08 | 44 | 2.44444444444444
GO:0009266 | response to temperature stimulus | 2.188115495411 | 4.82926880925535e-08 | 56 | 3.11111111111111
GO:0042742 | defense response to bacterium | 2.63108996391132 | 3.21039500601209e-07 | 35 | 1.94444444444444
GO:0006970 | response to osmotic stress | 2.01066896490237 | 5.06187151676817e-07 | 58 | 3.22222222222222
[NAME] | response to endogenous stimulus | 1.58890848282152 | 7.27420004021589e-07 | 112 | 6.22222222222222
GO:0009651 | response to salt stress | 1.98671229795301 | 2.4239069387245e-06 | 53 | 2.94444444444444
GO:0009753 | response to jasmonic acid stimulus | 2.57133627242322 | 6.2129944922432e-06 | 29 | 1.61111111111111
GO:0009723 | response to ethylene stimulus | 2.16125247035573 | 6.98375843927832e-06 | 40 | 2.22222222222222
GO:0016265 | death | 2.12381345118421 | 1.39600356006435e-05 | 39 | 2.16666666666666
GO:0008219 | cell death | 2.12381345118421 | 1.39600356006435e-05 | 39 | 2.16666666666666
GO:0009725 | response to hormone stimulus | 1.52167390652108 | 1.98043023914485e-05 | 100 | 5.55555555555555
GO:0009409 | response to cold | 2.13713548999983 | 2.76353849149384e-05 | 36 | 2
GO:0009408 | response to heat | 2.61392424761134 | 3.53118127453409e-05 | 24 | 1.33333333333333
GO:0006468 | protein amino acid phosphorylation | 1.45463452652674 | 4.13142236616481e-05 | 112 | 6.22222222222222
GO:0006793 | phosphorus metabolic process | 1.40057302945501 | 5.77132265085312e-05 | 129 | 7.16666666666666
GO:0006796 | phosphate metabolic process | 1.4016732439322 | 5.83341274420901e-05 | 129 | 7.16666666666666
GO:0009738 | abscisic acid mediated signaling | 3.17762525371221 | 6.07865484591077e-05 | 17 | 0.944444444444444
GO:0042430 | indole and derivative metabolic process | 3.9520045172219 | 0.000140980882948708 | 12 | 0.666666666666666
[NAME] | indole derivative metabolic process | 3.9520045172219 | 0.000140980882948708 | 12 | 0.666666666666666
GO:0012501 | programmed cell death | 2.04689023201403 | 0.000145399318049687 | 33 | 1.83333333333333
GO:0042435 | indole derivative biosynthetic process | 4.11222091656874 | 0.00021284598525437 | 11 | 0.611111111111111
GO:0009873 | ethylene mediated signaling pathway | 2.19684956986747 | 0.000213822887949312 | 27 | 1.5
GO:0009755 | hormone-mediated signaling | 1.66496486605182 | 0.000339472279919541 | 52 | 2.88888888888888
GO:0032870 | cellular response to hormone stimulus | 1.66496486605182 | 0.000339472279919541 | 52 | 2.88888888888888
GO:0009751 | response to salicylic acid stimulus | 2.21312252964426 | 0.000466117888331423 | 24 | 1.33333333333333
GO:0009814 | defense response, incompatible interaction | 2.59350296442687 | 0.000469595003385968 | 18 | 1
GO:0016310 | phosphorylation | 1.35032412409322 | 0.000634738448488719 | 115 | 6.38888888888888
GO:0002252 | immune effector process | 4.81113593400928 | 0.000880931828110799 | 8 | 0.444444444444444
GO:0000160 | two-component signal transduction system (phosphorelay) | 1.90348841425825 | 0.00102284495902266 | 30 | 1.66666666666666
GO:0010604 | positive regulation of macromolecule metabolic process | 2.80649596150541 | 0.00117096134560602 | 14 | 0.777777777777777
GO:0006790 | [NAME] process | 2.02222453366618 | 0.00128555175292956 | 25 | 1.38888888888888
GO:0009615 | response to virus | 3.54667072058376 | 0.00151676014961723 | 10 | 0.555555555555555
GO:0006979 | response to oxidative stress | 1.73502637341449 | 0.00158525932655595 | 36 | 2
GO:0010557 | positive regulation of macromolecule biosynthetic process | 2.85422548466026 | 0.00162143586068363 | 13 | 0.722222222222222
GO:0051607 | defense response to virus | 5.09600582483877 | 0.00167452908744261 | 7 | 0.388888888888888
GO:0019748 | secondary metabolic process | 1.56959044655621 | 0.00205251424023888 | 48 | 2.66666666666666
GO:0034976 | response to endoplasmic reticulum stress | 5.92800677583286 | 0.00224505924397133 | 6 | 0.333333333333333
GO:0007242 | intracellular signaling cascade | 1.38320158102766 | 0.00275497393914129 | 79 | 4.38888888888888
GO:0031328 | positive regulation of cellular biosynthetic process | 2.64435596372936 | 0.00317410857841954 | 13 | 0.722222222222222
GO:0009891 | positive regulation of biosynthetic process | 2.64435596372936 | 0.00317410857841954 | 13 | 0.722222222222222
GO:0019438 | aromatic compound biosynthetic process | 1.80137880319882 | 0.00343677564962011 | 28 | 1.55555555555555
GO:0009626 | plant-type hypersensitive response | 3.07378129117259 | 0.00429605975181549 | 10 | 0.555555555555555
GO:0034050 | host programmed cell death induced by symbiont | 3.0069599587558 | 0.00500637681846769 | 10 | 0.555555555555555
GO:0006350 | transcription | 1.25553766698926 | 0.00610641053388376 | 119 | 6.61111111111111
GO:0006915 | apoptosis | 1.84963002114164 | 0.00628088586184834 | 23 | 1.27777777777777
GO:0010193 | response to ozone | 3.87296442687747 | 0.00753099400724508 | 7 | 0.388888888888888
GO:0006972 | hyperosmotic response | 2.82286036944422 | 0.00769155630733602 | 10 | 0.555555555555555
GO:0042538 | hyperosmotic salinity response | 2.96400338791643 | 0.00939343525729266 | 9 | 0.5
GO:0044272 | sulfur compound biosynthetic process | 2.06833881275165 | 0.00983503580065863 | 16 | 0.888888888888888
GO:0042343 | indole glucosinolate metabolic process | 7.90400903444381 | 0.010544322808327 | 4 | 0.222222222222222
[NAME] | cellular amino acid derivative metabolic process | 1.58080180688876 | 0.011492158760837 | 32 | 1.77777777777777
GO:0045859 | regulation of protein kinase activity | 3.45800395256917 | 0.0133170527830341 | 7 | 0.388888888888888
GO:0043549 | regulation of kinase activity | 3.45800395256917 | 0.0133170527830341 | 7 | 0.388888888888888
GO:0051173 | positive regulation of nitrogen compound metabolic process | 2.41511387163561 | 0.0142294935550316 | 11 | 0.611111111111111
GO:0045935 | positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 2.41511387163561 | 0.0142294935550316 | 11 | 0.611111111111111
GO:0043405 | regulation of MAP kinase activity | 13.8320158102766 | 0.0148833876010865 | 3 | 0.166666666666666
GO:0046283 | [NAME] process | 4.94000564652738 | 0.0150784639058143 | 5 | 0.277777777777777
GO:0009625 | response to insect | 4.94000564652738 | 0.0150784639058143 | 5 | 0.277777777777777
GO:0002213 | defense response to insect | 6.91600790513833 | 0.0159734960773565 | 4 | 0.222222222222222
GO:0052317 | [NAME] process | 6.91600790513833 | 0.0159734960773565 | 4 | 0.222222222222222
GO:0010120 | camalexin biosynthetic process | 6.91600790513833 | 0.0159734960773565 | 4 | 0.222222222222222
GO:0045941 | positive regulation of transcription | 2.51491196550485 | 0.0161881919449889 | 10 | 0.555555555555555
GO:0016311 | dephosphorylation | 2.1406691134952 | 0.0171448656097184 | 13 | 0.722222222222222
GO:0010628 | positive regulation of gene expression | 2.47000282326369 | 0.0180919642160376 | 10 | 0.555555555555555
GO:0009070 | [NAME] amino acid biosynthetic process | 3.22747035573122 | 0.0185659551781894 | 7 | 0.388888888888888
GO:0009812 | [NAME] process | 2.42666944039941 | 0.02015340557163 | 10 | 0.555555555555555
GO:0051338 | regulation of transferase activity | 3.12335840877215 | 0.0216559587562163 | 7 | 0.388888888888888
GO:0006355 | regulation of transcription, DNA-dependent | 1.2320528315857 | 0.022632944400751 | 97 | 5.38888888888888
GO:0009700 | indole phytoalexin biosynthetic process | 6.14756258234519 | 0.0226908205826211 | 4 | 0.222222222222222
GO:0052314 | [NAME] process | 6.14756258234519 | 0.0226908205826211 | 4 | 0.222222222222222
GO:0046217 | indole phytoalexin metabolic process | 6.14756258234519 | 0.0226908205826211 | 4 | 0.222222222222222
GO:0042431 | indole metabolic process | 6.14756258234519 | 0.0226908205826211 | 4 | 0.222222222222222
GO:0052315 | phytoalexin biosynthetic process | 6.14756258234519 | 0.0226908205826211 | 4 | 0.222222222222222
GO:0042398 | cellular amino acid derivative biosynthetic process | 1.63987816307403 | 0.0234217410377415 | 23 | 1.27777777777777
GO:0051252 | regulation of RNA metabolic process | 1.22530185716606 | 0.0249947637995974 | 97 | 5.38888888888888
GO:0009627 | systemic acquired resistance | 3.02575345849802 | 0.0250750934677873 | 7 | 0.388888888888888
GO:0030001 | metal ion transport | 1.53689064558629 | 0.0255200198604249 | 28 | 1.55555555555555
GO:0009759 | indole glucosinolate biosynthetic process | 10.3740118577075 | 0.0283450977330186 | 3 | 0.166666666666666
GO:0009069 | [NAME] acid metabolic process | 2.44094396651941 | 0.0286693296229807 | 9 | 0.5
GO:0042325 | regulation of phosphorylation | 2.93406395975565 | 0.0288357952783721 | 7 | 0.388888888888888
GO:0010038 | response to metal ion | 1.40481410573122 | 0.0293029958983466 | 39 | 2.16666666666666
GO:0042440 | pigment metabolic process | 1.91730912221656 | 0.0296126281714675 | 14 | 0.777777777777777
[NAME] | anthocyanin biosynthetic process | 5.53280632411067 | 0.0307050593689259 | 4 | 0.222222222222222
GO:0006816 | calcium ion transport | 3.3196837944664 | 0.0307731682828818 | 6 | 0.333333333333333
GO:0046686 | response to cadmium ion | 1.43819124632846 | 0.0317736691647052 | 34 | 1.88888888888888
GO:0016138 | glycoside biosynthetic process | 2.2309702919801 | 0.0330462669343553 | 10 | 0.555555555555555
GO:0009813 | flavonoid biosynthetic process | 2.34883287344321 | 0.0351935371550474 | 9 | 0.5
GO:0033554 | cellular response to stress | 1.36371986861882 | 0.0361966662387674 | 42 | 2.33333333333333
GO:0007568 | aging | 2.08427635497319 | 0.036330719815661 | 11 | 0.611111111111111
GO:0052543 | callose deposition in cell wall | 3.84222661396574 | 0.036635066713242 | 5 | 0.277777777777777
GO:0019757 | glycosinolate metabolic process | 2.51491196550485 | 0.0368360365195465 | 8 | 0.444444444444444
GO:0019760 | glucosinolate metabolic process | 2.51491196550485 | 0.0368360365195465 | 8 | 0.444444444444444
GO:0016143 | S-glycoside metabolic process | 2.51491196550485 | 0.0368360365195465 | 8 | 0.444444444444444
GO:0016137 | glycoside metabolic process | 1.97600225861095 | 0.0387417083322514 | 12 | 0.666666666666666
GO:0009696 | [NAME] process | 5.0298239310097 | 0.0400009575891007 | 4 | 0.222222222222222
GO:0006457 | protein folding | 1.48790608317717 | 0.0400591310204629 | 27 | 1.5
GO:0019220 | regulation of phosphate metabolic process | 2.68955862977602 | 0.0422699639581776 | 7 | 0.388888888888888
GO:0051174 | regulation of phosphorus metabolic process | 2.68955862977602 | 0.0422699639581776 | 7 | 0.388888888888888
GO:0006855 | multidrug transport | 2.02869565217391 | 0.0426477828826906 | 11 | 0.611111111111111
GO:0052386 | cell wall thickening | 3.64000416059912 | 0.0438343342292839 | 5 | 0.277777777777777
GO:0009130 | pyrimidine nucleoside monophosphate biosynthetic process | 8.299209486166 | 0.0449998836948268 | 3 | 0.166666666666666
GO:0009314 | response to radiation | 1.32006789890607 | 0.0452863361028921 | 46 | 2.55555555555555
GO:0046148 | pigment biosynthetic process | 1.90786424969333 | 0.0481471470904764 | 12 | 0.666666666666666
GO:0010224 | response to UV-B | 2.35438566983432 | 0.0502496292886707 | 8 | 0.444444444444444
GO:0009631 | cold acclimation | 3.45800395256917 | 0.0517676139091567 | 5 | 0.277777777777777
GO:0052545 | callose localization | 3.45800395256917 | 0.0517676139091567 | 5 | 0.277777777777777
GO:0019758 | glycosinolate biosynthetic process | 2.86179637454 | 0.0543190780853051 | 6 | 0.333333333333333
GO:0019761 | glucosinolate biosynthetic process | 2.86179637454 | 0.0543190780853051 | 6 | 0.333333333333333
GO:0016144 | S-glycoside biosynthetic process | 2.86179637454 | 0.0543190780853051 | 6 | 0.333333333333333
GO:0009698 | phenylpropanoid metabolic process | 1.58318253250154 | 0.0544171127192111 | 19 | 1.05555555555555
GO:0033037 | polysaccharide localization | 3.29333709768492 | 0.0604284987215662 | 5 | 0.277777777777777
GO:0009911 | positive regulation of flower development | 2.76640316205533 | 0.0614697026682094 | 6 | 0.333333333333333
GO:0015893 | drug transport | 1.90190217391304 | 0.0615959302583496 | 11 | 0.611111111111111
GO:0045449 | regulation of transcription | 1.12077598462716 | 0.0639405301918456 | 164 | 9.11111111111111
GO:0009129 | pyrimidine nucleoside monophosphate metabolic process | 6.91600790513834 | 0.0643171977915492 | 3 | 0.166666666666666
GO:0043255 | regulation of carbohydrate biosynthetic process | 6.91600790513834 | 0.0643171977915492 | 3 | 0.166666666666666
GO:0032270 | positive regulation of cellular protein metabolic process | 6.91600790513834 | 0.0643171977915492 | 3 | 0.166666666666666
GO:0010050 | vegetative phase change | 6.91600790513834 | 0.0643171977915492 | 3 | 0.166666666666666
GO:0051247 | positive regulation of protein metabolic process | 6.91600790513834 | 0.0643171977915492 | 3 | 0.166666666666666
GO:0042493 | response to drug | 1.87842190016103 | 0.0659477288900402 | 11 | 0.611111111111111
GO:0048507 | meristem development | 1.80417597525347 | 0.06705239253018799 | 12 | 0.666666666666666
GO:0006470 | protein amino acid dephosphorylation | 1.94817124088403 | 0.0687137452465813 | 10 | 0.555555555555555
GO:0042362 | fat-soluble vitamin biosynthetic process | 3.9520045172219 | 0.0751575015296513 | 4 | 0.222222222222222
GO:0006775 | fat-soluble vitamin metabolic process | 3.9520045172219 | 0.0751575015296513 | 4 | 0.222222222222222
GO:0033674 | positive regulation of kinase activity | 3.9520045172219 | 0.0751575015296513 | 4 | 0.222222222222222
GO:0045860 | positive regulation of protein kinase activity | 3.9520045172219 | 0.0751575015296513 | 4 | 0.222222222222222
GO:0046395 | [NAME] process | 1.83315872184389 | 0.0752280540837485 | 11 | 0.611111111111111
GO:0016054 | organic acid catabolic process | 1.83315872184389 | 0.0752280540837485 | 11 | 0.611111111111111
GO:0009699 | phenylpropanoid biosynthetic process | 1.62093935276679 | 0.0780696741605204 | 15 | 0.833333333333333
GO:0009416 | response to light stimulus | 1.27634480652767 | 0.0799499781354938 | 43 | 2.38888888888888
GO:0006811 | ion transport | 1.26255722406176 | 0.084563623139527 | 45 | 2.5
GO:0006984 | ER-nuclear signaling pathway | 5.92800677583286 | 0.0858263477857916 | 3 | 0.166666666666666
GO:0010189 | vitamin E biosynthetic process | 5.92800677583286 | 0.0858263477857916 | 3 | 0.166666666666666
GO:0042360 | vitamin E metabolic process | 5.92800677583286 | 0.0858263477857916 | 3 | 0.166666666666666
GO:0051094 | positive regulation of developmental process | 2.25172350399852 | 0.0868867715726244 | 7 | 0.388888888888888
GO:0006357 | regulation of transcription from RNA polymerase II promoter | 2.8816699604743 | 0.0906304222712022 | 5 | 0.277777777777777