Spreadsheet: 0e33760f-23fb-4369-9670-5480bbfd5fb6

 | Table S4. GO analysis of RBPJ binding peaks in asynchronous F9 cells
 | (A) All RBPJ peaks
 | Biological Process | P-Value
 | stem cell maintenance | 1.49289e-17
 | stem cell development | 4.73722e-17
 | [NAME] process | 7.88509e-17
 | ncRNA processing | 1.69635e-16
 | antigen processing and presentation of peptide antigen via MHC class I | 1.48978e-14
 | ribosome biogenesis | 4.11354e-12
 | regulation of translation | 6.39508e-12
 | negative regulation of myeloid cell differentiation | 1.58066e-11
 | antigen processing and presentation of exogenous peptide antigen via MHC class I | 4.47154e-11
 | hindbrain morphogenesis | 1.05436e-10
 | blastocyst development | 1.73325e-10
 | cell junction organization | 2.04206e-09
 | cell junction assembly | 4.1191e-09
 | organelle assembly | 6.79409e-09
 | rRNA processing | 1.82394e-08
 | tRNA metabolic process | 2.99557e-08
 | rRNA metabolic process | 3.03609e-08
 | trophectodermal cell differentiation | 4.68954e-08
 | regulation of gene expression, epigenetic | 5.71238e-08
 | cell-cell junction organization | 7.41897e-08
 | calcium ion-dependent exocytosis | 1.81929e-07
 | tRNA processing | 2.07208e-07
 | regulation of TOR signaling cascade | 2.44951e-07
 | regulation of glial cell proliferation | 3.27367e-07
 | negative regulation of oligodendrocyte differentiation | 4.32979e-07
 | blastocyst formation | 4.60155e-07
 | cerebellar cortex development | 1.84938e-06
 | stem cell division | 2.00111e-06
 | transcription initiation, DNA-dependent | 3.28332e-06
 | negative regulation of TOR signaling cascade | 3.51363e-06
 | cerebellar cortex morphogenesis | 4.76572e-06
 | cellular response to oxygen levels | 4.7833e-06
 | cellular response to hypoxia | 5.01005e-06
 | CRD-mediated mRNA stabilization | 6.87934e-06
 | cerebellum morphogenesis | 1.27285e-05
 | neural plate anterior/posterior regionalization | 2.06332e-05
 | snRNA processing | 2.31077e-05
 | auditory receptor cell fate commitment | 2.71084e-05
 | demethylation | 5.39599e-05
 | neural plate regionalization | 6.99373e-05
 | positive regulation of TOR signaling cascade | 8.70941e-05
 | cellular response to glucose starvation | 8.95313e-05
 | [NAME] | 0.000511629
 | snRNA metabolic process | 0.000513179
 | regulation of Cdc42 GTPase activity | 0.00287288
 | negative regulation of protein kinase B signaling cascade | 0.00295016
 | (B) RBPJ peaks containing the RBPJ binding motif
 | Biological Process | P-Value
 | negative regulation of pro-B cell differentiation | 4.3355e-08
 | antigen processing and presentation of peptide antigen via MHC class I | 5.675530000000001e-07
 | auditory receptor cell fate commitment | 2.04674e-06
 | neuron fate determination | 6.47382e-06
 | auditory receptor cell fate determination | 1.0196e-05
 | stem cell maintenance | 1.09309e-05
 | antigen processing and presentation of exogenous peptide antigen via MHC class I | 1.2105e-05
 | stem cell development | 1.63116e-05
 | [NAME] tubule morphogenesis | 3.96371e-05
 | trophectodermal cellular morphogenesis | 4.00438e-05
 | negative regulation of glial cell proliferation | 4.02308e-05
 | negative regulation of oligodendrocyte differentiation | 4.3427e-05
 | stem cell differentiation | 6.40895e-05
 | axial mesoderm formation | 0.000115956
 | trophectodermal cell differentiation | 0.000154541
 | negative regulation of cytokine production | 0.000180862
 | [NAME] morphogenesis | 0.0002082
 | formation of primary germ layer | 0.000336038
 | regulation of T cell activation | 0.000337199
 | positive regulation of peptidyl-serine phosphorylation | 0.000352258
 | metanephric epithelium development | 0.000372328
 | somatic stem cell maintenance | 0.000409087
 | endoderm formation | 0.00059866
 | regulation of peptidyl-serine phosphorylation | 0.00063836
 | (C) RBPJ peaks containing the CTCF binding motif
 | Biological Process | P-Value
 | regulation of leukocyte mediated immunity | 1.34545e-06
 | regulation of immune response | 1.69435e-06
 | regulation of lymphocyte mediated immunity | 1.75775e-06
 | positive regulation of immune response | 2.31857e-05
 | regulation of immune effector process | 3.02973e-05
 | cell junction organization | 0.000192674
 | cell-cell junction organization | 0.00019361
 | immune response-regulating signaling pathway | 0.000228201
 | immune response-activating signal transduction | 0.000329972
 | cell junction assembly | 0.000345788
 | immune response-activating cell surface receptor signaling pathway | 0.000451462
 | positive regulation of immune effector process | 0.000462794
 | (D) RBPJ peaks containing  RBPJ and CTCF motifs
 | no terms