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Y Chromosome and mtDNA genetics reveal significant contrasts in affinities of modern Middle Eastern populations with European and African populations Danielle A Badro1, [NAME], [NAME], Sonia C  Youhanna1, Angélique Salloum1, [NAME], [NAME], [NAME] Khazen1, [NAME], [NAME], R [NAME] Wells5, [NAME], [NAME], [NAME] Zalloua*1,8, [NAME] Consortium9 1The Lebanese American University, Chouran, Beirut, Lebanon; 2Evolutionary Biology Institute, Pompeu Fabra University, Barcelona, Spain; 3Modern Thought and Literature, Stanford University, USA; 4Allan Wilson Centre for Molecular Ecology and Evolution and University of Otago, Dunedin 9054, New Zealand; 5The Genographic Project, National Geographic Society, Washington, DC, USA; 6The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK; 7Computational Biology Centre, IBM TJ Watson Research Centre, [NAME], NY, USA; 8Harvard School of Public Health, Boston, MA, USA; *Corresponding author: Dr. [NAME], The Lebanese American University, Chouran, Beirut 1102 2801, Lebanon. [NAME]: +[PHONE] Ext. 2855; Fax: +[PHONE]; E-mail: [EMAIL] | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20 | Unnamed: 21
Table S7: mtDNA FST distances between populations (adjusted so off-diagonals are slightly positive -- 0.000001)
 | Balkans | Burkina-Faso | Cyprus | Egypt | Ethiopia | Iraq | Jordan | Kenya | Lebanon | Libya | LibyanSahara | [NAME] | Morocco | [NAME] | Palestinian | SaudiArabia | Slovakia | Syria | Tunisia | WesternEurope | Yemen
Balkans | 0 | 0.13389 | 0.0204 | 0.02523 | 0.12288 | 0.01609 | 0.00606 | 0.27255 | 0.0036 | 0.01535 | 0.02899 | 0.10969 | 0.03376 | 0.1817 | 0.0114 | 0.03575 | 0.00162 | 0.00474 | 0.03776 | 0.00212 | 0.05041
Burkina-Faso | 0.13389 | 0 | 0.10166 | 0.05056 | 0.0357 | 0.14232 | 0.09287 | 0.10495 | 0.133 | 0.05977 | 0.0846 | 0.01776 | 0.04651 | 0.02355 | 0.1034 | 0.09961 | 0.13317 | 0.11219 | 0.03821 | 0.16438 | 0.05812
Cyprus | 0.0204 | 0.10166 | 0 | 0.01509 | 0.07375 | 0.02748 | 0.01404 | 0.17553 | 0.01402 | 0.01668 | 0.03808 | 0.06515 | 0.02133 | 0.12138 | 0.02729 | 0.04214 | 0.02983 | 0.01077 | 0.03124 | 0.02587 | 0.03175
Egypt | 0.02523 | 0.05056 | 0.01509 | 0 | 0.04177 | 0.03153 | 0.01015 | 0.14237 | 0.02461 | 1e-06 | 0.01966 | 0.0261 | 0.00847 | 0.06734 | 0.0198 | 0.02704 | 0.02563 | 0.01732 | 0.01124 | 0.04213 | 0.01343
Ethiopia | 0.12288 | 0.0357 | 0.07375 | 0.04177 | 0 | 0.09648 | 0.08438 | 0.03965 | 0.13099 | 0.04423 | 0.0763 | 0.00937 | 0.04295 | 0.01115 | 0.08911 | 0.07771 | 0.11499 | 0.09608 | 0.04728 | 0.16705 | 0.02993
Iraq | 0.01609 | 0.14232 | 0.02748 | 0.03153 | 0.09648 | 0 | 0.01035 | 0.20599 | 0.00883 | 0.02503 | 0.07053 | 0.10401 | 0.04375 | 0.1544 | 0.00289 | 0.00815 | 0.02 | 0.00699 | 0.05284 | 0.0268 | 0.03709
Jordan | 0.00606 | 0.09287 | 0.01404 | 0.01015 | 0.08438 | 0.01035 | 0 | 0.20742 | 0.00456 | 1e-06 | 0.02363 | 0.06992 | 0.02108 | 0.12005 | 0.00525 | 0.01976 | 0.0089 | 0.00209 | 0.02213 | 0.01513 | 0.0265
Kenya | 0.27255 | 0.10495 | 0.17553 | 0.14237 | 0.03965 | 0.20599 | 0.20742 | 0 | 0.28171 | 0.13999 | 0.1819 | 0.07123 | 0.13927 | 0.04272 | 0.20596 | 0.19068 | 0.25713 | 0.23053 | 0.13687 | 0.33171 | 0.10393
Lebanon | 0.0036 | 0.133 | 0.01402 | 0.02461 | 0.13099 | 0.00883 | 0.00456 | 0.28171 | 0 | 0.01303 | 0.03749 | 0.10668 | 0.03571 | 0.178 | 0.00895 | 0.02977 | 0.01004 | 0.00097 | 0.04376 | 0.00783 | 0.04744
Libya | 0.01535 | 0.05977 | 0.01668 | 1e-06 | 0.04423 | 0.02503 | 1e-06 | 0.13999 | 0.01303 | 0 | 0.02334 | 0.05545 | 0.00456 | 0.06842 | 0.00597 | 0.01593 | 0.02041 | 0.00521 | 0.00252 | 0.02983 | 0.00742
LibyanSahara | 0.02899 | 0.0846 | 0.03808 | 0.01966 | 0.0763 | 0.07053 | 0.02363 | 0.1819 | 0.03749 | 0.02334 | 0 | 0.06639 | 0.0197 | 0.1191 | 0.03902 | 0.05894 | 0.03099 | 0.03539 | 0.01196 | 0.03871 | 0.03606
[NAME] | 0.10969 | 0.01776 | 0.06515 | 0.0261 | 0.00937 | 0.10401 | 0.06992 | 0.07123 | 0.10668 | 0.05545 | 0.06639 | 0 | 0.01481 | 0.01944 | 0.08182 | 0.07225 | 0.11006 | 0.08852 | 0.02286 | 0.14227 | 0.0337
Morocco | 0.03376 | 0.04651 | 0.02133 | 0.00847 | 0.04295 | 0.04375 | 0.02108 | 0.13927 | 0.03571 | 0.00456 | 0.0197 | 0.01481 | 0 | 0.0549 | 0.02952 | 0.03645 | 0.03727 | 0.02577 | 0.00465 | 0.04941 | 0.01741
[NAME] | 0.1817 | 0.02355 | 0.12138 | 0.06734 | 0.01115 | 0.1544 | 0.12005 | 0.04272 | 0.178 | 0.06842 | 0.1191 | 0.01944 | 0.0549 | 0 | 0.12394 | 0.10689 | 0.18163 | 0.14435 | 0.04689 | 0.22444 | 0.04503
Palestinian | 0.0114 | 0.1034 | 0.02729 | 0.0198 | 0.08911 | 0.00289 | 0.00525 | 0.20596 | 0.00895 | 0.00597 | 0.03902 | 0.08182 | 0.02952 | 0.12394 | 0 | 0.01174 | 0.01301 | 0.00492 | 0.03035 | 0.0226 | 0.03078
SaudiArabia | 0.03575 | 0.09961 | 0.04214 | 0.02704 | 0.07771 | 0.00815 | 0.01976 | 0.19068 | 0.02977 | 0.01593 | 0.05894 | 0.07225 | 0.03645 | 0.10689 | 0.01174 | 0 | 0.03569 | 0.02084 | 0.04415 | 0.05442 | 0.02162
Slovakia | 0.00162 | 0.13317 | 0.02983 | 0.02563 | 0.11499 | 0.02 | 0.0089 | 0.25713 | 0.01004 | 0.02041 | 0.03099 | 0.11006 | 0.03727 | 0.18163 | 0.01301 | 0.03569 | 0 | 0.01082 | 0.03657 | 0.00463 | 0.05164
Syria | 0.00474 | 0.11219 | 0.01077 | 0.01732 | 0.09608 | 0.00699 | 0.00209 | 0.23053 | 0.00097 | 0.00521 | 0.03539 | 0.08852 | 0.02577 | 0.14435 | 0.00492 | 0.02084 | 0.01082 | 0 | 0.03051 | 0.01136 | 0.03195
Tunisia | 0.03776 | 0.03821 | 0.03124 | 0.01124 | 0.04728 | 0.05284 | 0.02213 | 0.13687 | 0.04376 | 0.00252 | 0.01196 | 0.02286 | 0.00465 | 0.04689 | 0.03035 | 0.04415 | 0.03657 | 0.03051 | 0 | 0.05436 | 0.0218
WesternEurope | 0.00212 | 0.16438 | 0.02587 | 0.04213 | 0.16705 | 0.0268 | 0.01513 | 0.33171 | 0.00783 | 0.02983 | 0.03871 | 0.14227 | 0.04941 | 0.22444 | 0.0226 | 0.05442 | 0.00463 | 0.01136 | 0.05436 | 0 | 0.07431
Yemen | 0.05041 | 0.05812 | 0.03175 | 0.01343 | 0.02993 | 0.03709 | 0.0265 | 0.10393 | 0.04744 | 0.00742 | 0.03606 | 0.0337 | 0.01741 | 0.04503 | 0.03078 | 0.02162 | 0.05164 | 0.03195 | 0.0218 | 0.07431 | 0