Spreadsheet: c87faf14-768f-42d6-af5c-ba2088f885f6
Sheet: Sheet1

Table S6. Transcription factors that are the most highly expressed (RPKM ≧ 100) in developing fibers and/or which are differentially expressed between wild and domesticated cottons (bold text, P < 0.05). Underlined indicates differential expression when one domesticated accession was excluded.
GoraiID | AtG_ID | Sequence description | TF family | wild10 | dom10 | wild 20 | dom 20
Gorai.013G040000 | AT3G18990 | AP2/B3-like transcriptional factor family protein | ABI3VP1 | 24 | 7 | 51 | 9
Gorai.011G056300 | AT1G53910 | related to [NAME] 12 (RAP2.12) | AP2-EREBP | 228 | 263 | 272 | 156
Gorai.012G055200 | AT3G28857 | basic helix-loop-helix (bHLH) DNA-binding family protein | bHLH | 10 | 54 | 0 | 2
Gorai.002G016500 | AT5G54680 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | 35 | 63 | 38 | 50
Gorai.007G307500 | AT1G09250 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | 23 | 51 | 7 | 18
Gorai.013G130200 | AT1G09250 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | 36 | 64 | 14 | 24
Gorai.010G035900 | AT5G50010 | sequence-specific DNA binding transcription factors | bHLH | 44 | 69 | 41 | 28
Gorai.002G126500 | AT1G75390 | bZIP44 | bZIP | 80 | 25 | 300 | 68
Gorai.010G008000 | AT1G75390 | bZIP44 | bZIP | 85 | 14 | 200 | 29
Gorai.012G155000 | [NAME] | G-box binding factor 6 (GBF6), bZIP11 | bZIP | 174 | 75 | 509 | 93
Gorai.003G142600 | AT1G08010 | GATA transcription factor 11 (GATA11) | C2C2-Gata | 17 | 14 | 55 | 15
Gorai.004G261900 | AT3G02790 | zinc finger (C2H2 type) family protein | C2H2 | 109 | 72 | 144 | 78
Gorai.009G092800 | AT2G29660 | zinc finger (C2H2 type) family protein | C2H2 | 52 | 78 | 62 | 61
Gorai.012G028300 | AT3G02790 | zinc finger (C2H2 type) family protein | C2H2 | 104 | 179 | 64 | 131
Gorai.002G248400 | AT2G37170 | [NAME] protein 2 (PIP2) | C3H | 25 | 88 | 6 | 26
Gorai.003G147100 | [NAME] | RING/U-box superfamily protein | C3H | 78 | 166 | 55 | 72
Gorai.005G001700 | AT5G01960 | RING/U-box superfamily protein | C3H | 38 | 54 | 35 | 27
Gorai.010G001500 | AT5G42200 | RING/U-box superfamily protein | C3H | 12 | 10 | 180 | 62
Gorai.008G084100 | AT2G22900 | Galactosyl transferase GMA12/[NAME] family protein | CAMTA | 133 | 313 | 61 | 116
[NAME] | AT5G12840 | nuclear factor Y, subunit [NAME] (NF-YA1) | CCAAT-HAP2 | 13 | 7 | 62 | 11
Gorai.011G241600 | AT2G37060 | nuclear factor Y, subunit [NAME] (NF-YB8) | [NAME] | 16 | 4 | 61 | 8
Gorai.006G222400 | AT3G24120 | Homeodomain-like superfamily protein | G2-like | 70 | 44 | 134 | 33
Gorai.002G037800 | AT4G25210 | DNA-binding storekeeper protein-related transcriptional regulator | GeBP | 118 | 136 | 140 | 88
Gorai.007G012300 | AT5G52510 | SCARECROW-like 8 | GRAS | 49 | 48 | 112 | 44
Gorai.013G034600 | AT4G34610 | BEL1-like homeodomain 6 | Homeobox | 7 | 6 | 52 | 15
Gorai.009G135100 | AT1G79840 | GLABRA2 | Homeobox | 109 | 96 | 75 | 52
Gorai.007G235200 | AT4G40060 | homeobox protein 16 | Homeobox | 17 | 4 | 68 | 6
Gorai.011G111500 | AT4G40060 | homeobox protein 16 | Homeobox | 54 | 15 | 75 | 21
[NAME] | AT4G36740 | [NAME] 40 | Homeobox | 53 | 20 | 12 | 8
Gorai.003G163800 | AT1G62990 | KNOTTED-like homeobox of Arabidopsis thaliana 7 (KNAT7) | Homeobox | 19 | 5 | 100 | 12
Gorai.011G035500 | AT4G18960 | [NAME] | MADS | 104 | 46 | 115 | 38
Gorai.012G042600 | AT3G58780 | [NAME] | MADS | 78 | 39 | 142 | 44
Gorai.009G265100 | AT4G09960 | AGL11,SEEDSTICK | MADS | 367 | 195 | 389 | 162
Gorai.009G288000 | AT4G09960 | AGL11,SEEDSTICK | MADS | 228 | 226 | 435 | 170
Gorai.001G207300 | AT3G02310 | [NAME] | MADS | 66 | 24 | 91 | 19
Gorai.005G165000 | AT1G24260 | AGL9,SEPALLATA3 | MADS | 33 | 10 | 99 | 13
Gorai.012G180300 | AT1G24260 | AGL9,SEPALLATA3 | MADS | 189 | 140 | 151 | 75
Gorai.004G138300 | AT1G63910 | MYB103 | MYB | 0 | 0 | 112 | 57
Gorai.005G162600 | AT4G38620 | MYB4 | MYB | 57 | 27 | 21 | 16
Gorai.013G196800 | AT1G08810 | MYB60 | MYB | 171 | 162 | 18 | 25
Gorai.004G196800 | AT5G14750 | MYB66 | MYB | 65 | 24 | 23 | 19
Gorai.009G276400 | AT4G37260 | MYB73 | MYB | 7 | 5 | 56 | 9
Gorai.002G215000 | AT1G58100 | TCP family transcription factor | TCP | 38 | 59 | 17 | 37
Gorai.008G147800 | AT5G23280 | TCP family transcription factor | TCP | 32 | 51 | 12 | 18
Gorai.007G036800 | AT3G47620 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | TCP | 49 | 107 | 8 | 20
Gorai.009G253700 | AT1G76880 | Duplicated homeodomain-like superfamily protein | Trihelix | 32 | 50 | 33 | 20
Gorai.001G004000 | AT4G18670 | Leucine-rich repeat (LRR) family protein | Trihelix | 49 | 105 | 34 | 41
Gorai.007G274100 | AT1G14440 | homeobox protein 31 | ZF-HD | 0 | 0 | 95 | 4