Spreadsheet: 1778c61a-6703-4f89-b334-d074997d8e78
Sheet: Table S1a

Genomic location and details of Alu inserts recovered
clones 1-144: complete characterization
clones 150-268:  additional data for insertion site distribution analysis
 |  | [NAME] (GRCh37/hg19) |  |  |  | 5' Alu truncation or recombination: (bp missing)
Clone | Driver | CHR | position | Strand | (inter)genic |  | Alu plasmid | Cell line | Direct Repeat | Atail | Endo Cleavage Site |  |  |  |  |  |  | Atypical insertion | Other observations
1 | LINE-1 | 5 | 39107125 | minus | genic /exon | no | pBS-Ya5rescue-A70D | HeLa | AAAAACATTCCACA | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | A | no
2 | [NAME] | 9 | 97894942 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAGTGAACGGGTT | AAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | G | A | no
3 | LINE-1 | 17 | 19921248 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAACTTGGTGATTCT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAaaaaa | T | T | T | T |  | A | T | no
4 | LINE-1 | 20 | 7130649 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | [NAME] | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAa | T | T | T | T |  | A | A | no
5 | [NAME] | 12 | 90412031 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAACTAACAGGAGG | AAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAaaaa | T | T | T | T |  | A | A | no
6 | LINE-1 | 5 | 45784963 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AATTGAATGCAGAT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | A | A | T | T |  | A | A | no
8 | [NAME] | 6 | 75863870 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGTAATATA | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | A | no
9 | LINE-1 | 17 | 38298267 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | [NAME] | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
10 | [NAME] | 14 | 78080203 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATGAAAACAAC | AAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACaaaaa | T | T | T | T |  | A | A | no
14 | [NAME] | 12 | 54194943 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | GAAAAGATGT | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | T | T | C |  | A | T | no
15 | [NAME] | 3 | 149112532 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTTTGAACCTTG | AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | A | no
17 | LINE-1 | 10 | 91344768 | plus | genic | no | pBS-Ya5rescue-A30D | HeLa | AAAAAATATAAATTTTT | AAAAAAAAAAAAAACTAAAAAAAAAAATACAAAAAAAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | G | no
18 | LINE-1 | 7 | 80207048 | minus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAGAATATTCTTT | AAAAAAAAAAAAAAAACTAAAAAAAAAAAAATACAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | A | no
20 | LINE-1 | 13 | 110579080 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAGACTGAAGAAATA | AAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | C | T | T | T |  | G | A | no
22 | LINE-1 | 12 | 20053995 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AGAAATAAGTTTTTAT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAa | T | T | C | T |  | A | C | no
23 | [NAME] | 5 | 95622168 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGAATCAATAG | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
25 | LINE-1 | 12 | 1485432 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAGACATATT | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAaa | T | C | T | T |  | A | A | no
26 | LINE-1 | 10 | 69896024 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAGAAAAGGACC | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | C | T | T | T |  | A | A | no
27 | [NAME] | 9 | 17024668 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGTTAACCT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
28 | [NAME] | 16 | 69500842 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAATTTATT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAaa | T | C | T | T |  | A | C | no
29 | LINE-1 | 5 | 59814549 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAGATACTGCC | AAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | G | A | no
30 | LINE-1 | 9 | 98430829 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAAAAATGCAATCCT | AAAAAAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAAAAAAAACAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | A | no
31 | LINE-1 | 15 | 36732143 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAAATTTTATTTT | AAAAAAAAAAAACTAAAAAAAAAATACAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
32 | [NAME] | 8 | 141765251 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGAAAATTAG | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | A | no
33 | LINE-1 | 9 | 124049036 | minus | genic | no | pBS-Ya5rescue-A30D | HeLa | AAAAAATACCTACTGTA | AAAAAAAAAAACTAAAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | A | no
35 | LINE-1 | 9 | 129888976 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATAAACCA | AAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | T | no
36 | LINE-1 | 6 | 68059409 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | [NAME] | AAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | C | T | T | T |  | G | A | no
38 | LINE-1 | 4 | 151379841 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAACAAGAAAGAGC | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
39 | LINE-1 | 5 | 21542539 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGATATATGGATTTA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | A | no
42 | LINE-1 | 4 | 184194385 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAA | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaaaaaa | T | T | T | T |  | G | A | no
44 | LINE-1 | 5 | 33309606 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAACCATCCA | AAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
45 | LINE-1 | 21 | 28745144 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAATCTCAGTTTC | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
46 | LINE-1 | 20 | 8779579 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | GAAAAATTAGATTCT | AAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | T | T | C |  | A | A | no
47 | LINE-1 | 2 | 170561870 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGATAATT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | A | no
48 | LINE-1 | 4 | 15638359 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAATGTAATTGTA | [NAME] | T | T | C | T |  | A | T | no
54 | [NAME] | 6 | 136981148 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTGTAGATT | AAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | T | no
55 | [NAME] | 6 | 136558667 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTAAAAATGTG | AAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | A | no
56 | [NAME] | 2 | 234312608 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAATTTAATGTGTG | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | C | no
57 | [NAME] | 1 | 41408564 | minus | genic | insertion by recombination with genomic Alu: caused 98,865 kb deletion | pBS-Ya5rescue-A70D | HeLa | none (inserted through recombination) | none | . | . | . | . |  | . | . | insertion by recombination with genomic Alu: caused 98,865 bp deletion
58 | [NAME] | 1 | 109491736 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGTTTAATATC | AAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
59 | [NAME] | 4 | 121674454 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AATAGTATGATTTA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | A | T | T |  | A | T | no
60 | [NAME] | 2 | 228108922 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AACAATGAAATA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | G | T | T |  | A | A | no
61 | [NAME] | 14 | 50000464 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGCTGAAAGA | AAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
62 | [NAME] | 15 | 33056819 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATGTTAGCGGC | AAAAAAAAAAAAAAAAAAAAACATTACaaaaa | T | T | T | T |  | G | A | no
63 | [NAME] | 16 | 86633892 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | TAAAGGAAATGAGG | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAA | T | T | T | A |  | A | T | no
64 | [NAME] | 11 | 130084684 | plus | intergenic | no | pBS-Ya5rescue-SH | HeLa | AGAAGTTCGAGACC | [NAME] | T | T | C | T |  | A | G | no
65 | LINE-1 | X | 115456032 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | GAAAAGGTGATATTT | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA | T | T | T | C |  | A | A | no
67 | LINE-1 | 13 | 89566510 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAATTTCT | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | A | no
68 | LINE-1 | 5 | 36073451 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | CAAAAGAAGGTTGA | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | T | T | G |  | G | A | no
72 | [NAME] | 16 | 14536134 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAACAAGTATGTG | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | G | T | no
73 | LINE-1 | 8 | 81155536 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AGAAATTCAGATGGTAG | AAAAAAAAAAAAAAAAAAACATTACa | T | T | C | T |  | A | T | no
74 | LINE-1 | 11 | 86515625 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAAAAAAACAAACTGC | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | T | no
76 | [NAME] | 9 | 97694639 | plus | genic | yes: 115-121 bp | pBS-Ya5rescue-A70Du | HeLa | *undetermined (no 3' sequence) | AAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | . | . | . | . |  | . | . | no
77 | [NAME] | 11 | 75775172 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | TAGGAATGTT | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAATAAAAA | C | C | T | A |  | A | A | no
78 | [NAME] | 9 | 117610791 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AGAATCTG | AAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAa | T | T | C | T |  | A | A | no
79 | [NAME] | 11 | 64887860 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AGAAGATGAAAAAG | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAa | T | T | C | T |  | A | A | no
80 | [NAME] | 12 | 46713555 | plus | intergenic | yes: 129 bp | pBS-Ya5rescue-A70Du | HeLa | AAAATTTATGTATTA | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAaaaa | T | T | T | T |  | A | A | no
81 | [NAME] | 16 | 66895293 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAGACATGGTT | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | C | no
82 | [NAME] | 10 | 94664520 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAACTTCCTACTCT | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | G | no
83 | [NAME] | 17 | 8072661 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | GAGAAATGCAGAT | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | C | T | C |  | A | T | no
84 | [NAME] | 9 | 33346926 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AGAAACTGG | AAAAAAAAAAAAAAAAAAAAAAACATTACa | T | T | C | T |  | G | A | no
85 | [NAME] | 3 | 147900227 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | [NAME] | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAa | T | T | C | T |  | A | T | no
87 | [NAME] | 12 | 95168036 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | TAAAATCTAGTCT | [NAME] | T | T | T | A |  | A | A | no
88 | [NAME] | 9 | 126744038 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAACAATAACTTCT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | G | T | T | T |  | A | T | no
89 | [NAME] | 18 | 72573745 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAATATTTTTTA | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | T | no
91 | [NAME] | 10 | 69240667 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAAGTTAATTCACC | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | G | A | no
92 | [NAME] | 1 | 68060762 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAGAAAGCATAAA | AAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | C | A | no
93 | [NAME] | 13 | 37536966 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | GAGATGTGCT | AAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | C | T | C |  | A | A | no
94 | [NAME] | 3 | 189651214 | minus | intergenic | no | pBS-Jorescue-70Du | HeLa | AACAGGCTA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACaa | T | G | T | T |  | G | A | no
95 | [NAME] | 10 | 80221124 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAGCAGGCTTCT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | C | T | T | T |  | A | C | no
96 | [NAME] | 2 | 133685841 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAGCTTCAGGAA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAaa | T | C | T | T |  | A | A | no
97 | [NAME] | 1 | 15646423 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AATGAAAATGAACTTGC | AAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | C | A | T | T |  | G | A | no
98 | [NAME] | 1 | 218884781 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAGTGACCT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | A | C | T | T |  | G | C | no
99 | [NAME] | 12 | 13131825 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | TAAAAGGCAGAATG | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | T | T | A |  | A | T | no
100 | LINE-1 | 8 | 121131336 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AATATATTATATATT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | A | T | T |  | A | T | no
101 | LINE-1 | 14 | 73813205 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAAAAAAAAAAAAAAA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAaaaaaaaaaaaaaaaaaaaaaaa | T | T | T | T |  | G | A | no
103 | LINE-1 | 3 | 99590784 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AATAAAAAAGCAAAGGA | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAaa | T | A | T | T |  | G | C | no
105 | LINE-1 | 12 | 110701857 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAAAAAAAGG | AAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaaaaaaaaaaa | T | T | T | T |  | G | A | no
106 | LINE-1 | 17 | 38552227 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AATATTTTTAAGA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | A | T | T |  | A | T | no
107 | [NAME] | 6 | 146090957 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAATTTTTTATTGTC | AAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | A | T | T | T |  | C | T | no
108 | [NAME] | 6^ | 96943242 | plus | intergenic | yes: 84-89 bp | pBS-Ya5rescue-A70Du | HeLa | none | AAAAAAAAAAA | . | . | . | . |  | . | . | ^ landed in an L1, chromosome 6 is the best match, but this may be an insertion in an unannotated L1 element not present in the human reference sequence
109 | LINE-1 | 7 | 44970630 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAAAAAGAAAAA | AAAAAAAAAAAAAAAAAAAACATTACAaaaaaaaaaaaaa | T | T | T | T |  | G | A | no
110 | LINE-1 | 22 | 31879121 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AACAGAATAGCAGGTAC | AAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | G | T | T |  | A | G | no
119 | [NAME] | 12 | 20058768 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAGAGAGAT | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | G | A | no
120 | LINE-1 | 5 | 26453190 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | [NAME] | AAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | T | no
121 | LINE-1 | 9 | 137949426 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAAAAATAAAAACA | AAAAAAAAAAACTAAAAAAAAAATACAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | A | no
122 | LINE-1 | 15 | 35143814 | minus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAGAATATTTAACAC | AAAAAAAAAAAACTAAAAAAAAAATACAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | T | no
123 | [NAME] | 10 | 46986668 | minus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AGAAATCAGCCATCAT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | T | T | C | T |  | G | C | no
124 | [NAME] | 15 | 31259673 | plus | genic | no | pBS-Ya5rescue-A30D | HeLa | AAACTCAGTATTCT | AAAAAAAAAACTAAAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaa | G | T | T | T |  | C | T | no
125 | [NAME] | 10 | 121635083 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAGAAATGGGAGCCTTC | AAAAAAAAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | G | T | no
126 | [NAME] | 1 | 145825741 | minus | genic | no | pBS-Ya5rescue-A30D | HeLa | AAAAACTTGTTT | AAAAAAAAAACTAAAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | G | A | no
127 | LINE-1 | 16 | 88733379 | minus | genic | no | pBS-Ya5rescue-A30D | HeLa | AAAAAAAAAAAAAAAAA | AAAAAAAAAAAAAAACTAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaaaaaaaaaaaaaaa | T | T | T | T |  | A | A | no
128 | LINE-1 | 7 | 123903007 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | AAAAATGATAGTA | AAAAAAAAAAACTAAAAAAAAAAAAAAAAAAAAAAATACAAAAAAAAAAAaaaaa | T | T | T | T |  | A | A | no
129 | [NAME] | 18 | 54213642 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAACAGCAAAAG | AAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
130 | [NAME] | 1 | 212590765 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AGAAAAGCCGCAAACTC | AAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAa | T | T | C | T |  | A | A | no
131 | LINE-1 | 1 | 156439894 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | *undetermined (no 3' sequence) | AAAAAAAAAAAAAAAAAAAAAAAaCaTTaCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | . | . | . | . |  | . | .
132 | LINE-1 | 4 | 173162876 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAAGGAGAAATCA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAACACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | T | no
133 | LINE-1 | 4 | 145551973 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AGAAATACTATAAAAAAT | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGagaaa | T | T | C | T |  | T | T | no
134 | LINE-1 | 3 | 123311449 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAATTATAAATGCA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaaa | T | T | T | T |  | A | A | no
135 | [NAME] | 4 | 151058540 | plus | genic | no | pBS-Ya5rescue-A70Du | HeLa | *undetermined (no 3' sequence) |  | . | . | . | . |  | . | .
137 | [NAME] | 6 | 106930681 | plus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAAAGTAAAAATAA | AAAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAaaaaaa | T | T | T | T |  | A | T | no
138 | [NAME] | 14 | 50329568 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | *undetermined (no 3' sequence) |  | . | . | . | . |  | . | .
139 | [NAME] | 1 | 16216890 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAGAATACAAAAATTAG | AAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | G | no
140 | [NAME] | 17 | 37132159 | minus | intergenic | no | pBS-Ya5rescue-A70Du | HeLa | AAAATTGA | AAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACACaaaa | T | T | T | T |  | T | A | no
141 | LINE-1 | 16 | 57139354 | minus | genic | no | pBS-Ya5rescue-A70Du | HeLa | AAAAA | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaa | T | T | T | T |  | A | A | no
142 | LINE-1 | X | 13030507 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGGACTCTTGTG | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | C | C | T | T |  | A | A | no
143 | [NAME] | 18 | 71783287 | plus | genic | yes: 226 bp | pBS-Ya5rescue-A70Du | HeLa | ATTTCT | AAAAAAAAAAAAAAAAAAAAAAAACATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAa | A | A | A | T |  | G | C | no
144 | [NAME] | 8 | 119981513 | plus | intergenic | no | pBS-Ya5rescue-A30D | HeLa | [NAME] | AAAAAAAAAACTAAAAAAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa | T | C | T | T |  | A | T | no
 |  |  |  |  |  |  |  |  | *We were unable to sequence through the Atail into the 3' flank and none of several primers designed to anneal on the predicted 3' flank yielded any sequence information.
Additional INSERTs recovered for insertion site distribution analysis:
 |  | [NAME] (GRCh37/hg19) |  |  |  | 5' Alu truncation or recombination: (bp missing)
Clone | Driver | CHR | position | Strand | (inter)genic |  | Alu plasmid | Cell line | Direct Repeat | Atail | Endo Cleavage Site |  |  |  |  |  |  | Atypical insertion
150 | [NAME] | 1 | 1329515 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAA | Not Done | T | T | T | T |  | G | G | no
151 | [NAME] | 1 | 8215946 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAACAAAAAAGGA | Not Done | T | T | T | T |  | G | G | no
152 | [NAME] | 1 | 8937306 | minus | genic | insertion by recombination with genomic Alu | pBS-Ya5rescue-A70D | HeLa | none (inserted through recombination) | Not Done | . | . | . | . |  | . | . | insertion by recombination with genomic Alu
153 | [NAME] | 1 | 21737472 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATCAGAAATG | Not Done | T | T | T | T |  | A | T | no
154 | [NAME] | 1 | 54191570 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAACTTCCC | Not Done | T | C | T | T |  | G | A | no
155 | [NAME] | 1 | 65860631 | minus | genic /exon | no | pBS-Ya5rescue-A70D | HeLa | AAAAGAACCCAGCAA | Not Done | T | T | T | T |  | C | T | no | Landed in the CDS of DNAJC6
156 | [NAME] | 1 | 66642147 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAATAATGCAGTAA | Not Done | A | T | T | T |  | A | A | no
157 | [NAME] | 1 | 67441039 | plus | genic | yes:152 bp | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
158 | [NAME] | 1 | 85808537 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAATGCAGAT | Not Done | T | T | T | T |  | A | A | no
159 | [NAME] | 1 | 117549581 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTTTCA | Not Done | T | T | T | T |  | A | T | no
160 | [NAME] | 1 | 151963026 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAATTGTTTTCCA | Not Done | T | T | C | T |  | G | G | no
161 | [NAME] | 1 | 182982875 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | ACTAAATCTTCCT | Not Done | T | A | G | T |  | A | A | no
162 | [NAME] | 1 | 186433913 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAATTTTATTATCTC | Not Done | T | T | C | T |  | G | G | no
163 | [NAME] | 1 | 186648182 | minus | genic /exon | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | . |  | Landed in the CDS of PTGS2
164 | [NAME] | 1 | 205596728 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGGAGGTGAATTT | Not Done | C | C | T | T |  | A | G | no
165 | [NAME] | 1 | 206991724 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
166 | [NAME] | 2 | 10342071 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
167 | [NAME] | 2 | 56240461 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAATTCTTAGTTTT | Not Done | T | T | T | T |  | G | G | no
168 | [NAME] | 2 | 69430365 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAAAGGAAG | Not Done | T | T | T | T |  | A | A | no
169 | [NAME] | 2 | 70318707 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AGAAGTATATGCA | Not Done | T | T | C | T |  | A | A | no
170 | [NAME] | 2 | 101475178 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAATAAAGTAGG | Not Done | T | T | T | T |  | A | A | no
171 | [NAME] | 2 | 189995636 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAATATAAGTGTT | Not Done | T | T | C | T |  | A | A | no
172 | [NAME] | 2 | 194918772 | plus | … | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
173 | [NAME] | 2 | 210800221 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGTGATAGGT | Not Done | T | T | T | T |  | A | A | no
174 | [NAME] | 2 | 213446348 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAGAAGCACAGCA | Not Done | C | T | T | T |  | A | G | no
175 | [NAME] | 2 | 230982192 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | GAACTGGGCAGAGCC | Not Done | G | T | T | C |  | A | A | no
176 | [NAME] | 2 | 238628075 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAACTGCTGTATT | Not Done | T | T | C | T |  | G | A | no
177 | [NAME] | 2 | 238634801 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAATAAATTTAATA | Not Done | A | T | T | T |  | C | A | no
178 | [NAME] | 3 | 24844836 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
179 | [NAME] | 3 | 33345902 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAATATACCAT | Not Done | T | C | T | T |  | A | G | no
180 | [NAME] | 3 | 120085269 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
181 | [NAME] | 3 | 124745971 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | ATGAGTATGT | Not Done | T | C | A | T |  | C | A | no
182 | [NAME] | 3 | 150736931 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGAATGTTTACTACA | Not Done | T | C | T | T |  | G | C | no
183 | [NAME] | 3 | 152229496 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATAATTTAGCAGATCA | Not Done | T | T | T | T |  | A | A | no
184 | [NAME] | 3 | 171402897 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAATTACAATGTT | Not Done | T | T | T | T |  | G | C | no
185 | [NAME] | 3 | 181561035 | plus | intergenic | insertion by recombination with genomic Alu | pBS-Ya5rescue-A70D | HeLa | none (inserted through recombination) | Not Done | . | . | . | . |  | . | . | insertion by recombination with genomic Alu
186 | [NAME] | 3 | 184205951 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | CAAACTAACTATAAGGC | Not Done | T | T | T | G |  | A | A | no
187 | [NAME] | 3 | 197689496 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAAGGACATCTGTT | Not Done | T | T | C | T |  | A | A | no
188 | [NAME] | 4 | 124759370 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGTTACATCA | Not Done | T | T | T | T |  | A | A | no
189 | [NAME] | 5 | 19387313 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAATGTTTATTATTT | Not Done | A | T | T | T |  | A | A | no
190 | [NAME] | 5 | 36255339 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAGAAAGAGATTTA | Not Done | C | T | C | T |  | A | C | no
191 | [NAME] | 5 | 42284787 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTTAA | Not Done | T | T | T | T |  | A | A | no
192 | [NAME] | 5 | 64336200 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAACAGATATA | Not Done | T | T | T | T |  | A | T | no
193 | [NAME] | 5 | 76483382 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAAGA | Not Done | T | C | T | T |  | A | G | no
194 | [NAME] | 5 | 131066328 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
195 | [NAME] | 5 | 134356756 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAATGGTGTGCTTA | Not Done | T | T | C | T |  | A | A | no
196 | [NAME] | 5 | 141379654 | m | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTAGCCAAGCA | Not Done | T | T | T | T |  | A | A | no
197 | [NAME] | 5 | 148459878 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAACATTAAGCTG | Not Done | G | T | T | T |  | A | A | no
198 | [NAME] | 5 | 167190715 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | TAAAACAAATTCAT | Not Done | T | T | T | A |  | A | T | no
199 | [NAME] | 6 | 16730783 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAATATATTATT | Not Done | T | C | T | T |  | A | A | no
200 | [NAME] | 6 | 36825728 | plus | genic | insertion by recombination with genomic Alu | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | . | insertion by recombination with genomic Alu
201 | [NAME] | 6 | 64248332 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGATCAATGTTGG | Not Done | T | T | T | T |  | A | T | no
202 | [NAME] | 6 | 86242220 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
203 | [NAME] | 6 | 134633594 | plus | genic | yes: 116 bp | pBS-Ya5rescue-A70D | HeLa | None | Not Done | . | . | . | . |  | . | . | No DR,  caused a 22 bp genomic deletion
204 | [NAME] | 6 | 135233306 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAATTATT | Not Done | T | T | T | T |  | A | A | no
205 | [NAME] | 6 | 137359240 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAACTCAGAGTT | Not Done | T | T | C | T |  | A | C | no
206 | [NAME] | 7 | 1287709 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAAAAGG | Not Done | T | T | T | T |  | C | T | no
207 | [NAME] | 7 | 27741174 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
208 | [NAME] | 7 | 45867351 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
209 | [NAME] | 7 | 65619169 | minus | genic /exon | no | pBS-Ya5rescue-A70D | HeLa | CAAAAAAAAAAAAAAAAAAA | Not Done | T | T | T | G |  | A | A | no
210 | [NAME] | 7 | 72232576 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGCTGAGATC | Not Done | G | C | T | T |  | A | C | no
211 | [NAME] | 7 | 74666432 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATTAAAGAGATCT | Not Done | T | T | T | T |  | A | C | no
212 | [NAME] | 7 | 117267531 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAATGGCAGACA | Not Done | T | C | T | T |  | A | A | no
213 | [NAME] | 7 | 156719757 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAGCTCTTA | Not Done | T | T | T | T |  | G | T | no
214 | [NAME] | 8 | 97323906 | plus | genic | yes: entire Alu absent | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
215 | [NAME] | 8 | 102554170 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
216 | [NAME] | 9 | 22157141 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAGAATTATTTGTA | Not Done | C | T | T | T |  | A | A | no
217 | [NAME] | 9 | 34817513 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGATTGTC | Not Done | T | C | T | T |  | A | T | no
218 | [NAME] | 9 | 123725907 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGCCGTATGTG | Not Done | T | T | T | T |  | A | A | no
219 | [NAME] | 9 | 129894237 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAATGCAAATTCCC | Not Done | T | T | C | T |  | A | A | no
220 | [NAME] | 9 | 131304493 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAATGGGTCACTTCA | Not Done | T | T | C | T |  | A | T | no
221 | [NAME] | 10 | 73047314 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
222 | [NAME] | 10 | 91034339 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
223 | [NAME] | 10 | 91391732 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAAAAAAACA | Not Done | T | T | T | T |  | A | A | no
224 | [NAME] | 10 | 112270251 | plus | genic /exon | no | pBS-Ya5rescue-A70D | HeLa | AAGACTCATGGAC | Not Done | T | C | T | T |  | A | A | no
225 | [NAME] | 10 | 117012451 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | GAAAAACTCATCAT | Not Done | T | T | T | C |  | A | T | no
226 | [NAME] | 10 | 127918647 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
227 | [NAME] | 11 | 28671379 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AGGAGTACTTTTC | Not Done | T | C | C | T |  | A | T | no
228 | [NAME] | 11 | 46640505 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | TAAAGTGTTGGGGT | Not Done | T | T | T | A |  | G | A | no
229 | [NAME] | 11 | 57578561 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
230 | [NAME] | 11 | 74484409 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAGAGGTATTAGAGA | Not Done | C | T | T | T |  | A | A | no
231 | [NAME] | 11 | 101262810 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAACAATAAACT | Not Done | T | T | T | T |  | A | C | no
232 | [NAME] | 12 | 6582235 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAGAAAAAAGAATGG | Not Done | T | T | T | T |  | C | T | no
233 | [NAME] | 12 | 29807168 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAAATGTT | Not Done | T | C | T | T |  | A | A | no
234 | [NAME] | 12 | 104616769 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAATTA | Not Done | T | C | T | T |  | A | A | no
235 | [NAME] | 12 | 107312921 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AGACATTTAAAAAGTC | Not Done | G | T | C | T |  | A | A | no
236 | [NAME] | 12 | 112411757 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAATCCTACAGT | Not Done | T | T | T | T |  | G | T | no
237 | [NAME] | 12 | 112787674 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AGAAAAGAAATAAAACA | Not Done | T | T | C | T |  | A | G | no
238 | [NAME] | 13 | 77685020 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAGTTATCCAGCTC | Not Done | T | C | T | T |  | A | G | no
239 | [NAME] | 13 | 79200920 | plus | genic | insertion by recombination with genomic Alu | pBS-Ya5rescue-A70D | HeLa | none (inserted through recombination) | Not Done | . | . | . | . |  | . | . | insertion by recombination with genomic Alu
240 | [NAME] | 13 | 92850663 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAGAAGTATTATTAATT | Not Done | T | C | T | T |  | A | A | no
241 | [NAME] | 14 | 56285222 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AATAGTTACCTAATT | Not Done | T | A | T | T |  | A | A | no
242 | [NAME] | 14 | 65094075 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | GAGAATTAAATGAGCTA | Not Done | T | C | T | C |  | A | C | no
243 | [NAME] | 14 | 91245526 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
244 | [NAME] | 14 | 92352545 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | TGAAAGCACA | Not Done | T | T | C | A |  | A | A | no
245 | [NAME] | 15 | 37024052 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAATAATTGA | Not Done | T | C | T | T |  | A | T | no
246 | [NAME] | 15 | 48974167 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAATTCTACTTTA | Not Done | T | T | T | T |  | A | G | no
247 | [NAME] | 15 | 59724193 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAGAGATAAATAGGT | Not Done | C | T | T | T |  | A | A | no
248 | [NAME] | 15 | 69480707 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAAACTA | Not Done | T | C | T | T |  | A | T | no
249 | [NAME] | 16 | 30514516 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | GAAACTGGGTG | Not Done | T | T | T | C |  | A | A | no
250 | [NAME] | 16 | 69597400 | plus | intergenic | insertion by recombination with genomic Alu | pBS-Ya5rescue-A70D | HeLa | none (inserted through recombination) | Not Done | . | . | . | . |  | . | . | insertion by recombination with genomic Alu
251 | [NAME] | 16 | 89575313 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | TAAAGTGGAATCCA | Not Done | T | T | T | T |  | A | A | no
252 | [NAME] | 17 | 39958396 | minus | genic /exon | yes: 15 bp | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
253 | [NAME] | 17 | 48175331 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAGTAAGTTTTC | Not Done | T | C | T | T |  | G | T | no
254 | [NAME] | 17 | 61238975 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
255 | [NAME] | 17 | 62685113 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
256 | [NAME] | 17 | 65857789 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
257 | [NAME] | 17 | 68043422 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAGTAATTAATA | Not Done | T | T | T | T |  | A | A | no
258 | [NAME] | 19 | 32733002 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | TAAAACAATAAATCC | Not Done | T | T | T | A |  | A | T | no
259 | [NAME] | 19 | 57679450 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | TAAAAATTCTGTGATCAA | Not Done | T | T | T | A |  | G | C | no
260 | [NAME] | 20 | 43781473 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAGAAATTCCT | Not Done | T | C | T | T |  | A | A | no
261 | [NAME] | 20 | 48437556 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAGAGTTCTTTATATAT | Not Done | T | C | T | T |  | A | A | no
262 | [NAME] | 20 | 52835539 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAATATTTTA | Not Done | T | T | T | T |  | C | C | no
263 | [NAME] | 20 | 59087654 | minus | genic | no | pBS-Ya5rescue-A70D | HeLa | GAAAATCTCA | Not Done | T | T | T | C |  | A | A | no
264 | [NAME] | 21 | 46280278 | plus | genic | no | pBS-Ya5rescue-A70D | HeLa | AAAAATAAATAAATA | Not Done | T | T | T | T |  | G | A | no
265 | [NAME] | 22 | 20311747 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | AAAAAAAAGTGTC | Not Done | T | T | T | T |  | A | C | no
266 | [NAME] | 22 | 38002187 | plus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | [NAME] | Not Done | T | T | T | T |  | A | A | no
267 | [NAME] | X | 118503604 | minus | intergenic | no | pBS-Ya5rescue-A70D | HeLa | UNDETERMINED | Not Done | . | . | . | . |  | . | .
268 | [NAME] | X | 134042388 | minus | genic | yes: 221 bp | pBS-Ya5rescue-A70D | HeLa | AAGATTTACTGCTCCTC | Not Done | T | C | T | T |  | A | A | no