Spreadsheet: a17daee6-486c-4492-9b9b-f994127d6a33
Sheet: Sheet1

Supplemental Table 2 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3
Gene expression changes in Pcl3 shRNA ESCs by microarray following pre-plating
ProbeID | Short Name | Long Name | Fold change (Pcl3/scramble)
A_51_P507471 | 2510022D24Rik* | RIKEN cDNA 2510022D24 gene | 23.6680717434406
A_51_P516826 | Igf2 | insulin-like growth factor 2 | 4.17845670824506
A_52_P572808 | Agpat9 | RIKEN cDNA A230097K15 gene | 3.86221958935472
A_51_P312348 | Krt7 | keratin 7 | 3.799711548234
A_51_P243514 | 4732474O15Rik | RIKEN cDNA 4732474O15 gene | 3.61431162491741
A_51_P342549 | Hand1 | heart and neural crest derivatives expressed transcript 1 | 3.4610187724633
A_52_P229943 | Ostb | organic solute transporter beta | 3.36668890946674
A_52_P420504 | Acta2 | [NAME], alpha 2, smooth muscle, aorta | 3.28589855505424
A_52_P163750 | 3830417A13Rik | RIKEN cDNA 3830417A13 gene | 3.1617855538541
A_51_P255238 | Plac1 | placental specific protein 1 | 3.04011622226522
A_52_P83479 | Ifi204 | [NAME] activated gene 204 | 2.94878692511578
A_51_P251687 | Serpinb9g | serine (or cysteine) peptidase inhibitor, clade B, member 9g | 2.82098411089628
A_52_P648524 | Dio3* | deiodinase, iodothyronine type III | 2.79371418803407
A_51_P219424 | Serpinb9d | serine (or cysteine) peptidase inhibitor, clade B, member 9d | 2.74890339665718
A_52_P413940 | Phc3 | polyhomeotic-like 3 (Drosophila) | 2.7270634305744
A_51_P353934 | Nkx2-4 | NK2 transcription factor related, locus 4 (Drosophila) | 2.68578144111577
A_52_P867738 | AK042489 |  | 2.67604574895126
A_52_P255724 | 1810009N02Rik* | RIKEN cDNA 1810009N02 gene | 2.63551957483909
A_51_P334104 | Dcn | decorin | 2.59239758670012
A_51_P258529 | Pmp22 | peripheral [NAME] protein | 2.5281391961341
A_52_P502226 | 2810429I04Rik* | RIKEN cDNA 2810429I04 gene | 2.47267308569644
A_52_P489295 | Adamts1 | a disintegrin-like and metallopeptidase with thrombospondin type 1 motif, 1 | 2.44257005652409
A_51_P140237 | Fhl2 | four and a half LIM domains 2 | 2.40261060297583
A_51_P309307 | (Bcl2l15) | BCLl2-like 15 Gene [Source:MGI (curated);Acc:Bcl2l15-002] | 2.38673795987535
A_51_P424532 | Vnn1 | vanin 1 | 2.3612741256986
A_51_P246854 | Acta1 | [NAME], alpha 1, skeletal muscle | 2.3429666953625
A_51_P248609 | D4Wsu114e | DNA segment, Chr 4, Wayne State University 114, expressed | 2.3425362210796
A_51_P517904 | Nxt2 | nuclear transport factor 2-like export factor 2 | 2.26395958234999
A_52_P536869 | Per2 | period homolog 2 (Drosophila) | 2.22599079699166
A_52_P648433 | Tex13 | testis expressed gene 13 | 2.22125420941342
A_51_P410703 | Prss8 | protease, serine, 8 (prostasin) | 2.20699964600452
A_51_P379069 | Dkk1 | [NAME] 1 ([NAME] laevis) | 2.18528185221461
A_52_P224760 | Ptgs2 | prostaglandin-endoperoxide synthase 2 | 2.1687944914204
A_52_P165654 | Star | steroidogenic acute regulatory protein | 2.12201230948615
A_51_P290826 | [NAME] | calcitonin/calcitonin-related polypeptide, alpha | 2.11917382177172
A_52_P397909 | 2810429I04Rik* | RIKEN cDNA 2810429I04 gene | 2.08842370879653
A_51_P254855 | Ptgs2 | prostaglandin-endoperoxide synthase 2 | 2.08214617758612
A_52_P778761 | Vgll3* | vestigial like 3 (Drosophila) | 2.0795712692128
A_51_P257938 | Tacstd2 | tumor-associated calcium signal transducer 2 | 2.02864960588155
A_52_P141628 | Slc23a1 | solute carrier family 23 (nucleobase transporters), member 1 | 1.9999630611246
A_52_P93467 | Sdc4 | syndecan 4 | 1.99906649826321
A_51_P426195 | Nppb | natriuretic peptide precursor type B | 1.98668082929993
A_51_P450248 | Esx1 | extraembryonic, spermatogenesis, homeobox 1 | 1.96926205716275
A_52_P46447 | Crim1* | cysteine rich transmembrane BMP regulator 1 (chordin like) | 1.94715469065003
A_51_P383991 | Sept4 | septin 4 | 1.9466171782868
A_51_P150710 | Igj | immunoglobulin joining chain | 1.92953938508291
A_51_P491329 | Pdzk1ip1 | PDZK1 interacting protein 1 | 1.928259477997
A_52_P360259 | Zfp451* | zinc finger protein 451 | 1.9266742904087
A_52_P333529 | Slco2a1 | solute carrier organic anion transporter family, member 2a1 | 1.9185221955421
A_52_P113830 | 1600025M17Rik* | RIKEN cDNA 1600025M17 gene | 1.91823709586068
A_51_P478098 | Epb4.1l5* | erythrocyte protein band 4.1-like 5 | 1.91059438889902
A_52_P382886 | Gjb2 | gap junction membrane channel protein beta 2 | 1.91012894688036
A_51_P289249 | (Mpzl3) | [NAME] protein zero-like 3 Gene [Source:MGI (curated);Acc:Mpzl3-002] | 1.89664198605642
A_52_P106482 | Cryab | [NAME], alpha B | 1.88065308123511
A_52_P593110 | Ptbp2* | polypyrimidine tract binding protein 2 | 1.87657992332052
A_52_P195839 | Ctsc | cathepsin C | 1.8715545151798
A_51_P253019 | BC010981* | cDNA sequence BC010981 | 1.87143521134792
A_51_P333518 | Sh3rf2 | SH3 domain containing ring finger 2 | 1.83542268700181
A_52_P348189 | Krtcap3 | [NAME] associated protein 3 | 1.83507865334768
A_51_P122707 | Ldoc1 | [NAME], down-regulated in cancer 1 | 1.83101610253298
A_52_P322421 | Eva1 (Mpzl2) | epithelial V-like antigen 1 | 1.82048221320798
A_52_P282838 | Spin2 | [NAME], member 2 | 1.81895096881529
A_52_P867545 | LOC674367* | region containing RIKEN cDNA [NAME] gene; RIKEN cDNA 1110019K23 gene | 1.81226047593527
A_51_P312268 | 1810062O18Rik* | RIKEN cDNA 1810062O18 gene | 1.81146873703104
A_52_P432949 | Erbb3* | v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian) | 1.80512480450317
A_51_P491350 | Col4a2 | procollagen, type IV, alpha 2 | 1.78668674751622
A_51_P506236 | Clcn5 | chloride channel 5 | 1.77980789167584
A_52_P378827 | 2810429I04Rik* | RIKEN cDNA 2810429I04 gene | 1.77616335845245
A_51_P112405 | Plaur | plasminogen activator, urokinase receptor | 1.76624996867457
A_51_P428372 | Ppbp | pro-platelet basic protein | 1.7646991163298
A_51_P487298 | Vasn* | vasorin | 1.72226599808045
A_51_P150530 | Tm2d1 | TM2 domain containing 1 | 1.72136797525533
A_51_P476538 | 5430417L22Rik* | RIKEN cDNA 5430417L22 gene | 1.71765838021561
A_52_P149577 | Rab25 | RAB25, member RAS oncogene family | 1.71634527140149
A_52_P503927 | Tmem181 | [NAME] 181 | 1.71117637240591
A_51_P488340 | Tpte2 (Crlf2) | transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 | 1.70928693825089
A_51_P479818 | Lonrf3 | LON peptidase N-terminal domain and ring finger 3 | 1.70743130892585
A_52_P562661 | [NAME] | [NAME] and [NAME], T-cell differentiation protein | 1.70253710981219
A_52_P418489 | Tinagl (Tinagl1) | tubulointerstitial nephritis antigen-like | 1.68161961273111
A_51_P336391 | Tmem18 | [NAME] 18 | 1.66966548847594
A_51_P292073 | Haghl (Haghl|  [NAME]) | hydroxyacylglutathione hydrolase-like | 1.62205148571751
A_52_P196458 | [NAME] | DAZ interacting protein 1 | 0.616514450346155
A_51_P193794 | Lrp1 | low density lipoprotein receptor-related protein 1 | 0.615539315824821
A_52_P472660 | Smurf2* | SMAD specific E3 ubiquitin protein ligase 2 | 0.612954314667386
A_52_P678650 | [NAME] |  | 0.608986964964525
A_51_P216742 | Arhgap23 | RIKEN cDNA 4933428G20 gene | 0.605873490463445
A_52_P400425 | A530088H08Rik | [NAME] cDNA A530088H08 gene | 0.604390189519114
[NAME] | Slc17a7 | solute carrier family 17, member 7 | 0.594381589287732
A_51_P338713 | Ass1 | argininosuccinate synthetase 1 | 0.5869511235467
A_51_P373142 | AI854703 | expressed sequence AI854703 | 0.584564396955318
A_51_P366413 | 8030498J20Rik* | RIKEN cDNA 8030498J20 gene | 0.579717063490203
A_51_P240384 | Trps1 | trichorhinophalangeal syndrome I (human) | 0.576026558775221
A_51_P138876 | Mapkap1 | mitogen-activated protein kinase associated protein 1 | 0.575288820892951
A_52_P403443 | Tns3* | tensin 3 | 0.568318050232191
A_52_P421220 | [NAME] | DAZ interacting protein 1 | 0.566152673225165
A_52_P367520 | Nexn | [NAME] | 0.55811291683619
A_51_P450955 | 1110036O03Rik | RIKEN cDNA 1110036O03 gene | 0.548599305742765
A_52_P108845 | Clip3 | CAP-GLY domain containing linker protein 3 | 0.545596947495726
A_52_P644452 | Dock9 | dedicator of cytokinesis 9 | 0.5409517486955
A_51_P259876 | Dock9 | dedicator of cytokinesis 9 | 0.52689267425094
A_52_P373982 | Grhl2 | grainyhead-like 2 (Drosophila) | 0.52285869859845
A_52_P538673 | Fgf1 | fibroblast growth factor 1 | 0.522773956029197
A_51_P373696 | Maml2 | mastermind like 2 (Drosophila) | 0.51828687720354
A_51_P148828 | Fgf1 | fibroblast growth factor 1 | 0.509599389194788
A_51_P305230 | Elavl3 | ELAV ([NAME], abnormal vision, Drosophila)-like 3 | 0.503895606591662
A_51_P214796 | Suz12 | suppressor of zeste 12 homolog (Drosophila) | 0.502612687010151
A_52_P401473 | Ntn1 | netrin 1 | 0.501649399121992
A_52_P432715 | BB054706 |  | 0.497485384028892
A_51_P152550 | Iqcg | IQ motif containing G | 0.476529296594197
A_51_P280893 | Pla2g1b | phospholipase A2, group IB, pancreas | 0.462649031959298
A_51_P382970 | Itga9 | [NAME] 9 | 0.459417768042432
A_52_P408391 | [NAME] | neurogenic differentiation 1 | 0.44676120855494
A_51_P234692 | 2310043N10Rik* | RIKEN cDNA 2310043N10 gene | 0.429037965166255
A_52_P42255 | Crmp1 | [NAME] response mediator protein 1 | 0.425599231308646
A_52_P663296 | A330008L17Rik | RIKEN cDNA [NAME] gene | 0.422157908344803
A_51_P166434 | Atp6v1e1 | VATPase, H+ transporting, lysosomal V1 subunit E1 | 0.417660116085055
A_51_P408172 | 1110001D15Rik | RIKEN cDNA 1110001D15 gene | 0.406391271667004
A_52_P288177 | Epha4 | Eph receptor A4 | 0.397011046190162
A_51_P309095 | AK050362 |  | 0.385714594167638
A_52_P1069478 | OTTMUSG00000003947 | predicted gene, OTTMUSG00000003947 | 0.376960231194787
A_52_P303388 | Atp6v1e1 | VATPase, H+ transporting, lysosomal V1 subunit E1 | 0.376850812516194
A_51_P204442 | Phf19 | PHD finger protein 19 | 0.349030955555876
A_51_P258359 | Hus1b | Hus1 homolog b (S. pombe) | 0.335114132828948
A_52_P302316 | Kcnv1 | potassium channel, subfamily V, member 1 | 0.315889877065224
A_51_P115953 | Ctxn3 | predicted gene, ENSMUSG00000069372 | 0.252858726599259
A_52_P240706 | Ceacam2 | CEA-related cell adhesion molecule 2 | 0.243196166065125
A_52_P300533 | 2310043M15Rik* | RIKEN cDNA 2310043M15 gene | 0.213931937203936