Spreadsheet: 3b38cd2a-711f-438f-b768-5ea5ec74ad2f
Sheet: NucsFeaturesVsGeneSets.passback

Geneset | KS significance (log10) for passback
stress_branch.trans-modules (N=2036) | -79.510848
stress_carbohydrate.trans-modules (N=1825) | -74.474894
Huisinga+Pugh06:SAGA-dominiated (N=508) | -72.300687
yeast_tata_genes (N=784) | -67.799629
Hughes2000:Hughes00_tup1D_up (N=423) | -64.872593
Basehoar+al-Cell04:TATA (N=1086) | -58.5228
Cellular response to glucose starvation - UP (N=1394) | -58.374291
Hughes_unpub:SPT20_{Kayu}_down (N=510) | -56.341025
stress_carbohydrate_respiration.trans-modules (N=1383) | -54.997796
Hughes00_tup1__haploid__D-up.mutants (N=912) | -50.300033
Alternative_carbon - UP (N=1212) | -47.598206
Yeast Mutants:Hughes00_tup1 (haploid) D-up (N=912) | -46.123837
Stationary_phase - UP (N=1343) | -44.452317
Hughes00_ssn6__haploid__D-up.mutants (N=318) | -42.998513
AA_nitrogen_metabolism.trans-modules (N=425) | -42.47574
SAGA complex - UP (N=683) | -42.114256
Yeast Mutants:Hughes00_ssn6 (haploid) D-up (N=318) | -40.809242
Sabet04_H4_TXN:Negative (N=873) | -40.439066
Purine base metabolism - UP (N=634) | -39.822336
SWI/SNF complex - UP (N=733) | -39.504729
yeast_expression:expression: Stationary_phase_up (N=562) | -39.463453
Sporulation - UP (N=1344) | -39.381713
Alpha factor stimulus - UP (N=638) | -39.288896
Nitrogen_depletion - UP (N=573) | -38.503261
amino_acid_drug_nucleotide_transport.trans-modules (N=129) | -38.297696
metal_ion_transport.trans-modules (N=129) | -38.297696
sugar_transport_vitamin_NAD_metabolism_YAP6_PHD1_NRG1.trans-modules (N=268) | -37.384056
Regulation of transcription - UP ([NAME]) | -36.43922
transport.trans-modules (N=264) | -35.356776
Amino acid  metabolism - UP (N=1858) | -34.989179
Chromatin modification - UP (N=1207) | -34.968284
stress.trans-modules (N=602) | -34.578241
AA_starvation - UP (N=1851) | -34.248537
aerobic_metabolism.trans-modules (N=573) | -31.626493
Ideker01_gal10plusgal_D-up.mutants (N=349) | -31.601491
Hughes00_med2__haploid__D-down.mutants (N=77) | -31.448081
development.trans-modules (N=345) | -30.775307
Diauxic_shift - UP (N=366) | -30.738727
Yeast Mutants:Hughes00_med2 (haploid) D-down (N=77) | -30.647119
General regulation of transcription - UP (N=1167) | -30.126109
Yeast Mutants:Ideker01_gal10+gal D-up (N=349) | -29.971783
Hughes00_Itraconazole_D-up.mutants (N=400) | -29.657339
Histones - UP (N=389) | -29.441236
Sudarsanam00_7385_swi1_rich_medium_D-up.mutants (N=119) | -29.439263
yeast_expression:expression: SWI/SNF complex_up (N=286) | -29.240369
Hughes_unpub:SSN8_{Kayu}_up (N=292) | -28.860102
[NAME] sko1 dependent salt expression (N=549) | -28.773157
Salt induction ([NAME]) | -28.341183
general_AA.trans-modules (N=253) | -28.340544
Yeast Mutants:Sudarsanam00_7385 swi1 rich medium D-up (N=119) | -28.32718
Ideker01_gal4plusgal_D-up.mutants (N=422) | -28.189506
Sudarsanam00_7369_swi1_minimal_medium_D-up.mutants (N=142) | -28.09638
Flocculation - UP (N=210) | -27.941488
Medium stress (4060) - UP ([NAME]) | -27.830448
Nitrogen utilization - UP (N=2765) | -27.816708
Ideker01_gal1gal10plusgal_D-up.mutants (N=250) | -27.759931
Short stress (under 40) - UP (N=2640) | -27.718285
Long stress (over 60) - UP (N=2655) | -27.685059
Yeast Mutants:Hughes00_Itraconazole D-up (N=400) | -27.674459
Yeast Mutants:[NAME] swi1 minimal medium D-up (N=143) | -27.163627
Aerobic respiration - UP (N=511) | -27.151338
[NAME] Msn24 dependent salt expression (N=507) | -27.02438
Response to heat shock - UP (N=674) | -27.003246
[NAME]N=243) | -26.744503
Regulation of pH - UP (N=258) | -26.706602
[NAME] (N=82) | -26.546724
GO biological process:alcohol metabolism (N=140) | -26.490586
Yeast Mutants:Ideker01_gal1gal10+gal D-up (N=250) | -26.410608
Ideker01_gal10-gal_D-up.mutants (N=215) | -26.191549
Yeast Mutants:Ideker01_gal4+gal D-up (N=422) | -26.126845
Hughes_unpub:YKU80_{Stuart}_down (N=547) | -26.032188
C005-LEU3_B (N=538) | -26.020881
Hughes00_ERG11__tet_promoter__D-up.mutants (N=667) | -25.934316
TK_LEU3_B (N=358) | -25.875536
HeatShock_SUT1.reg-modules (N=208) | -25.866836
Hughes00_dig1__dig2_D-up.mutants (N=217) | -25.865294
AA_metabolism.trans-modules (N=334) | -25.807855
Yeast Mutants:Roberts00_fus3D 50 nM aF, 30 min wt D-down (N=82) | -25.742741
nitrogen_metabolism.trans-modules (N=109) | -25.222645
Yeast Mutants:Ideker01_gal10-gal D-up (N=215) | -24.829072
Hog1 dependent salt induction (N=575) | -24.744272
Ideker01_gal7plusgal_D-up.mutants (N=232) | -24.66842
AA_transport.trans-modules (N=59) | -24.607708
Yeast Mutants:Hughes00_dig1, [NAME] (N=217) | -24.4391
Hog1 induction on sko1 salt background (N=552) | -24.259071
Sko1-s-strong-N20 (N=417) | -24.180377
Severe stress - UP (N=3736) | -24.073269
cell_cycle_cell_wall.trans-modules (N=197) | -24.030869
Yeast Mutants:Hughes00_ERG11 (tet promoter) D-up (N=667) | -23.971625
yeast_expression:expression: Deheat_up (N=1022) | -23.933707
Heat shock - UP (N=927) | -23.787142
Response to stress - UP (N=4300) | -23.510058
Yeast Mutants:Ideker01_gal7+gal D-up (N=232) | -23.479306
Sudarsanam00_7370_snf2_minimal_medium_D-up.mutants (N=153) | -23.36898
yeast_expression:expression: Na stress_up (N=359) | -23.257859
Sko1-s.8.Peak-1000.1 (N=481) | -23.07898
Response to oxidative stress - UP (N=924) | -23.073381
alcohol_metabolism.go-process (N=158) | -23.003103
glucose_metabolism.trans-modules (N=76) | -22.985942
yeast_expression:expression: Rapamycin treatment_up (N=288) | -22.892001
HeatShock_MSN2.reg-modules (N=329) | -22.88872
cell_wall_ACE2_SWI5.trans-modules (N=103) | -22.46165
Meiosis - UP (N=1020) | -22.352226
Ideker01_gal1plusgal_D-down.mutants (N=396) | -22.28707
Yeast Mutants:Sudarsanam00_7370 snf2 minimal medium D-up (N=154) | -22.286063
carbohydrate_energy_reserves_MSN2_HSF1.trans-modules (N=406) | -22.231651
alcohol metabolism (N=157) | -22.10626
Sko1-ns.6.Peak-1000.1 (N=362) | -22.082766
Yeast Protein-DNA (TFs):Harbison04_DAL81_RAPA (N=96) | -21.946703
HeatShock_MSN4.reg-modules (N=316) | -21.81206
oxidoreductase_activity.go-function (N=254) | -21.756417
Mutants - UP (N=384) | -21.573269
yeast_expression:expression: Response to alkali_up (N=452) | -21.549022
cell_wall.trans-modules (N=117) | -21.48659
oxidoreductase activity (N=241) | -21.47357
YEPD_DM-above-5 (N=205) | -21.446545
Msn24 dependent salt induction (N=463) | -21.277643
Glycolysis - DOWN (N=184) | -21.197303
Hughes00_she4_D-up.mutants (N=423) | -21.014471
GO biological process:vitamin metabolism (N=71) | -20.989824
Yeast Mutants:Ideker01_gal1+gal D-down (N=396) | -20.827065
Carbohydrate metabolism - UP (N=3682) | -20.822648
Sko1-ns.4.Peak-1000.1 (N=372) | -20.802686
Huisinga+Pugh06:SAGA-TFIID (N=146) | -20.686989
Ideker01_gal1gal10plusgal_D-down.mutants (N=206) | -20.676438
Sko1-s.6.Peak-1000.1 (N=465) | -20.480527
GO molecular function:oxidoreductase activity (N=236) | -20.477164
rRNA_biogenesis_Puf4.trans-modules (N=551) | 23.649544
rRNA_metabolism.trans-modules (N=554) | 24.193388
structural molecule activity (N=324) | 24.853155
nuclear lumen (N=504) | 25.20141
organelle organization and biogenesis (N=1002) | 25.204714
membrane-enclosed lumen (N=698) | 25.297431
[NAME] (N=698) | 25.297431
organelle_lumen.go-component (N=662) | 26.420017
nuclear_lumen.go-component (N=461) | 26.709637
intracellular organelle (N=3589) | 27.019149
[NAME] (N=3589) | 27.019149
yeast_expression:expression: SWI/SNF complex_mid (N=5181) | 34.070418
intracellular (N=4412) | 36.68368
Sabet04_H4_TXN:Positive (N=890) | 40.439066
intracellular non-membrane-bound organelle (N=833) | 46.068443
non-membrane-bound organelle (N=833) | 46.068443
protein complex (N=1350) | 47.590159
non-membrane-bound_organelle.go-component (N=913) | 50.594803
Hughes2000:Hughes00_tup1D_mid (N=5005) | 58.48388
Basehoar+al-Cell04:TATAless (N=4552) | 58.5228
yeast_no_tata_genes (N=2883) | 67.799629
Huisinga+Pugh06:TFIID-dominated (N=4631) | 91.526176