Spreadsheet: be49f3da-7c60-487c-a227-cc360dd5e787
Sheet: Feuil1

Affected region in the original SS14 sequence (coding strand) | Coordinates in the original SS14 sequence (CP000805.1) | Coordinates in the SS14-RS sequence (CP004011.1) | Error type in the original SS14 sequence (CP000805.1) | Resulting change in the SS14-RS sequence (CP004011.1) | Gene coordinate in the original SS14 genome (CP000805.1) | Resulting change in the SS14-RS (CP004011.1) protein sequence | Note | Original SS14 (CP000805.1) annotation
TPASS_0006(+) | 7939 - 7940 | 7940 | del (C) | in (C) | 926 - 927 | GF |  | protein Tp75
TPASS_0013(+) | 13194 - 13195 | 13196 - 13197 | del (GG) | in (GG) | 653 - 654 | GF |  | hypothetical protein
[NAME]) | 13194 - 13195 | 13196 - 13197 | del (GG) | in (GG) | 31 - 32 | GF | NA1) | hypothetical protein
TPASS_0018(+) | 19429 - 19430 | 19433 | del (G) | in (G) | 15 - 16 | EP2) |  | transcription elongation factor
TPASS_0018(+) | 21226 | 21230 | sub (A→W) | sub (W→A) | 1812 | none
TPASS_0018(+) | 21229 - 21230 | 21234 | del (G) | in (G) | 1815 - 1816 | GF
TPASS_0018(+) | 21358 - 21359 | 21364 | del (A) | in (A) | 1944 - 1945 | GF
IGR TPASS_0026 - TPASS_0027 | 34076 - 34077 | 34083 | del (C) | in (C) | - | -
TPASS_0040(+) | 49361 - 49362 | 49369 | del (G) | in (G) | 1774 - 1775 | EP |  | methyl-accepting chemotaxis protein
TPASS_0049(-) | 58308 - 58309 | 58317 | del (C) | in (C) | 215 - 216 | TP |  | hypothetical protein
TPASS_0049(-) | 58309 | 58318 | sub (G→A) | sub (A→G) | 215 | none
TPASS_0065(+) | 72279 - 72280 | 72289 | del (G) | in (G) | 507 - 508 | TP |  | hypothetical protein
TPASS_0076(+) | 84202 - 84203 | 84213 | del (G) | in (G) | 814 - 815 | EP |  | sugar ABC transporter, permease protein
TPASS_0082(-) | 92168 - 92169 | 92180 | del (G) | in (G) | 260 - 261 | TP |  | formate hydrogenlyase transcriptional activator FhlA
TPASS_0082(-) | 92326 | 92338 | sub (T→W) | sub (W→T) | 103 | none
IGR TPASS_0082 - TPASS_0083 | 93124 - 93125 | 93137 | del (C) | in (C) | - | -
TPASS_0083(+) | 94137 - 94138 | 94151 | del (C) | in (C) | 964 - 965 | TP |  | hypothetical protein
IGR TPASS_0084 - TPASS_0085 | 94715 - 94716 | 94730 | del (C) | in (C) | - | -
IGR TPASS_0096 - TPASS_0097 | 106352 | 106367 | sub (G→R) | sub (R→G) | - | -
TPASS_0098(-) | 107079 | 107093 - 107094 | in (G) | del (G) | 288 | EP |  | possible heat-shock protein
TPASS_0106(-) | 119196 | 119210 | sub (G→C) | sub (C→G) | 1165 | AAC (V→L) |  | possible carnitine transporter
TPASS_0106(-) | 119197 | 119211 | sub (C→G) | sub (G→C) | 1164 | AAC (F→L)
IGR TPASS_0107 - TPASS_0108 | 122225 | 122238 - 122239 | in (C) | del (C) | - | -
TPASS_0110(+) | 126557 | 126570 | sub (G→R) | sub (R→G) | 1380 | none |  | hypothetical protein
TPASS_0117(-) | 135217 | 135230 | sub (A→G) | sub (G→A) | 1478 | AAC (T→I) |  | protein TprC
TPASS_0117(-) | 135224 | 135237 | sub (A→G) | sub (G→A) | 1471 | AAC (P→S)
TPASS_0117(-) | 135232 | 135245 | sub (A→G) | sub (G→A) | 1463 | AAC (A→V)
TPASS_0117(-) | 135236 | 135249 | sub (T→C) | sub (C→T) | 1459 | AAC (G→R)
IGR TPASS_0117 - TPASS_0118 | 136732 - 136733 | 136744 - 136745 | in (CC) | del (CC) | - | -
IGR TPASS_0121 - TPASS_0122 | 140946 - 140947 | 140958 - 140959 | del (CC) | in (CC) | - | -
TPASS_0135(-) | 157004 - 157005 | 157012 | del (C) | in (C) | 642 - 643 | TP |  | hypothetical protein
TPASS_0154(+) | 177419 | 177427 | sub (G→C) | sub (C→G) | 151 | AAC (R→A) |  | hypothetical protein
TPASS_0154(+) | 177420 | 177428 | sub (C→G) | sub (G→C) | 152 | AAC5)
TPASS_0154(+) | 177421 | 177429 | sub (G→C) | sub (C→G) | 153 | AAC5)
TPASS_0154(+) | 177422 | 177430 | sub (C→G) | sub (G→C) | 154 | AAC (V→L)
IGR TPASS_0162 - TPASS_0163 | 185687 - 185688 | 185696 | del (C) | in (C) | - | -
TPASS_0166(+) | 189471 | 189480 | sub (T→W) | sub (W→T) | 932 | none |  | ABC transporter, permease protein
TPASS_0172(-) | 192848 - 192849 | 192858 | del (C) | in (C) | 432 - 433 | EP |  | hypothetical protein
TPASS_0173(-) | 193331 | 193340 - 193341 | in (G) | del (G) | 668 | GF | NA1) | hypothetical protein
TPASS_0174(-) | 194652 | 194660 - 194661 | in (G) | del (G) | 158 | GF |  | hypothetical protein
TPASS_0175(-) | 194652 | 194660 - 194661 | in (G) | del (G) | 540 | GF |  | hypothetical protein
TPASS_0175(-) | 195152 | 195159 - 195160 | in (G) | del (G) | 40 | GF | NA1)
TPASS_0176(-) | 195277 - 195278 | 195285 | del (G) | in (G) | 211 -212 | GF | NA1) | hypothetical protein
TPASS_0177(-) | 196666 | 196673 - 196674 | in (G) | del (G) | 130 | TP |  | hypothetical protein
TPASS_0180(-) | 199709 - 199710 | 199717 - 199718 | del (GG) | in (GG) | 89 - 90 | GF |  | hypothetical protein
TPASS_0183(-) | 201138 | 201147 | sub (C→S) | sub (S→C) | 564 | none |  | hypothetical protein
TPASS_0201(+) | 212026 | 212035 | sub (G→K) | sub (K→G) | 377 | none |  | ribosomal protein L5
TPASS_0208(+) | 216233 - 216234 | 216243 | del (G) | in (G) | 1312 - 1313 | TP |  | preprotein translocase subunit
TPASS_0217(+) | 222813 - 222814 | 222824 | del (G) | in (G) | 586 - 567 | AF4) |  | heat shock protein DnaJ; frameshift
[NAME]) | 227502 - 227503 | 227514 | del (C) | in (C) | 143 - 144 | TP |  | possible D,D-carboxypeptidase
IGR TPASS_0222 - TPASS_0223 | 228626 - 228627 | 228639 | del (C) | in (C) | - | -
IGR TPASS_0222 - TPASS_0223 | 228627 | 228640 | sub (G→A) | sub (A→G) | - | -
TPASS_r0001 | 231478 - 231479 | 231492 | del (G) | in (G) | - | -
IGR TPASS_0233 - TPASS_t0013 | 243040 - 243041 | 243055 | del (C) | in (C) | - | -
TPASS_0248(+) | 262249 | 262263 - 262264 | in (C) | del (C) | 105 | TP | NA3) | hypothetical protein
TPASS_0248(+) | 262460 | 262474 | sub (T→Y) | sub (Y→T) | 316 | none
TPASS_0248(+) | 262461 | 262475 | sub (T→Y) | sub (Y→T) | 317 | none
TPASS_0248(+) | 262478 | 262492 | sub (T→Y) | sub (Y→T) | 334 | none |  | hypothetical protein
TPASS_0263(+) | 275451 - 275452 | 275466 | del (G) | in (G) | 241 - 242 | TP |  | hypothetical protein
IGR TPASS_0277 - TPASS_0278 | 295183 - 295184 | 295199 | del (C) | in (C) | - | -
TPASS_0279(+) | 295441 | 295456 - 295457 | in (G) | del (G) | 16 | EP2) |  | ribosomal protein S1
TPASS_0279(+) | 296262 | 296277 | sub (C→Y) | sub (Y→C) | 837 | none
TPASS_0284(+) | 300367 - 300368 | 300383 | del (A) | in (A) | 607 - 608 | GF |  | hypothetical protein
TPASS_0285(+) | 300367 - 300368 | 300383 | del (A) | in (A) | 8 - 9 | GF | NA1) | hypothetical protein
TPASS_0286(+) | 301771 - 301772 | 301788 | del (G) | in (G) | 361 - 362 | GF |  | hypothetical protein
TPASS_0287(+) | 301771 - 301772 | 301788 | del (G) | in (G) | 29 - 30 | GF | NA1) | hypothetical protein
TPASS_0288(+) | 303297 | 303313 - 303314 | in (G) | del (G) | 932 | GF |  | spore coat polysaccharide biosynthesis protein F
TPASS_0299(+) | 313538 - 313539 | 313555 | del (C) | in (C) | 197 - 198 | GF | NA1) | hypothetical protein
TPASS_0313(+) | 330887 | 330904 | sub (G→T) | sub (T→G) | 1723 | AAC (F→V) |  | protein TprE
TPASS_0314(-) | 331525 | 331542 | sub (C→G) | sub (G→C) | 132 | none |  | hypothetical protein
TPASS_0314(-) | 331533 | 331550 | sub (C→A) | sub (A→C) | 124 | AAC (F→V)
IGR TPASS_0316 - TPASS_0317 | 333542 | 333559 | sub (T→C) | sub (C→T) | - | -
IGR TPASS_0316 - TPASS_0317 | 333572 | 333589 | sub (G→A) | sub (A→G) | - | -
TPASS_0317(-) | 333716 | 333733 | sub (C→T) | sub (T→C) | 2128 | AAC (I→V) |  | protein TprG
TPASS_0317(-) | 333747 | 333764 | sub (A→G) | sub (G→A) | 2097 | none
TPASS_0317(-) | 333897 | 333915 | sub (C→T) | sub (T→C) | 1947 | AAC (P→L)
TPASS_0317(-) | 333898 | 333916 | sub (A→G) | sub (G→A) | 1946 | AAC5)
TPASS_0317(-) | 333900 | 333917 | sub (G→A) | sub (A→G) | 1944 | AAC5)
TPASS_0317(-) | 333902 | 333920 | sub (C→G) | sub (G→C) | 1942 | AAC (R→G)
TPASS_0317(-) | 333903 | 333921 | sub (A→G) | sub (G→A) | 1941 | none
TPASS_0317(-) | 333906 | 333923 | sub (G→A) | sub (A→G) | 1938 | AAC (Y→H)
TPASS_0317(-) | 333908 | 333925 | sub (G→A) | sub (A→G) | 1936 | AAC5)
TPASS_0317(-) | 333910 | 333927 | sub (C→T) | sub (T→C) | 1934 | AAC (E→G)
TPASS_0317(-) | 333912 | 333940 | sub (T→C) | sub (C→T) | 1932 | AAC (K→S)
TPASS_0317(-) | 333913 | 333941 | sub (G→T) | sub (T→G) | 1931 | AAC5)
TPASS_0317(-) | 333914 | 333942 | sub (A→T) | sub (T→A) | 1930 | AAC5)
TPASS_0317(-) | 333915 | 333943 | sub (G→T) | sub (T→G) | 1929 | AAC (E→S)
TPASS_0317(-) | 333916 | 333944 | sub (G→T) | sub (T→G) | 1928 | AAC5)
TPASS_0317(-) | 333917 | 333945 | sub (A→C) | sub (C→A) | 1927 | AAC5)
TPASS_0317(-) | 333918 | 333946 | sub (A→C) | sub (C→A) | 1926 | AAC (Q→G)
TPASS_0317(-) | 333919 | 333947 | sub (C→T) | sub (T→C) | 1925 | AAC5)
TPASS_0317(-) | 333920 | 333948 | sub (C→G) | sub (G→C) | 1924 | AAC5)
TPASS_0317(-) | 333921 | 333949 | sub (G→A) | sub (A→G) | 1923 | AAC (I→G)
TPASS_0317(-) | 333922 | 333950 | sub (C→A) | sub (A→C) | 1922 | AAC5)
TPASS_0317(-) | 333923 | 333951 | sub (C→T) | sub (T→C) | 1921 | AAC5)
TPASS_0317(-) | 333925 | 333943 | sub (G→C) | sub (C→G) | 1919 | AAC (G→S)
TPASS_0317(-) | 333926 | 333944 | sub (A→C) | sub (C→A) | 1918 | AAC5)
TPASS_0317(-) | 333928 | 333945 | sub (G→C) | sub (C→G) | 1916 | AAC (R→P)
TPASS_0317(-) | 333930 | 333947 | sub (G→C) | sub (C→G) | 1914 | AAC (V→L)
TPASS_0317(-) | 333932 | 333949 | sub (G→C) | sub (C→G) | 1912 | AAC5)
TPASS_0317(-) | 333935 | 333954 | sub (G→C) | sub (C→G) | 1909 | AAC (A→P)
TPASS_0317(-) | 333936 | 333955 | sub (G→C) | sub (C→G) | 1908 | AAC (T→N)
TPASS_0317(-) | 333937 | 333956 | sub (T→G) | sub (G→T) | 1907 | AAC5)
TPASS_0317(-) | 333942 | 333962 | sub (G→C) | sub (C→G) | 1902 | AAC (G→N)
TPASS_0317(-) | 333943 | 333963 | sub (T→C) | sub (C→T) | 1901 | AAC5)
TPASS_0317(-) | 333944 | 333964 | sub (T→C) | sub (C→T) | 1900 | AAC5)
TPASS_0317(-) | 333945 | 333965 | sub (A→G) | sub (G→A) | 1899 | none
TPASS_0317(-) | 333957 | 333974 | sub (C→T) | sub (T→C) | 1887 | none
TPASS_0317(-) | 333960 | 333978 | sub (G→C) | sub (C→G) | 1884 | AAC (A→D)
TPASS_0317(-) | 333961 | 333979 | sub (T→G) | sub (G→T) | 1883 | AAC5)
TPASS_0317(-) | 333965 | 333982 | sub (G→A) | sub (A→G) | 1879 | AAC (Y→H)
TPASS_0317(-) | 334139 | 334156 | sub (C→A) | sub (A→C) | 1705 | AAC (F→V)
TPASS_0324(+) | 342483 - 342484 | 342501 | del (G) | in (G) | 1415 - 1416 | GF |  | hypothetical protein
TPASS_0329(+) | 352981 | 352998 - 352999 | in (G) | del (G) | 1514 | TP |  | [NAME]
TPASS_0347(+) | 373240 - 373242 | 373256 - 373257 | in (GGG) | del (GGG) | 109 - 111 | TP |  | hypothetical protein
TPASS_0348(-) | 374073 - 374074 | 374088 | del (G) | in (G) | 1032 - 1033 | TP |  | hypothetical protein
IGR TPASS_0349 - TPASS_0350 | 375735 | 375749 - 375750 | in (C) | del (C) | - | -
TPASS_0350(+) | 376275 | 376289 | sub (G→C) | sub (C→G) | 457 | AAC (P→A) |  | gamma-glutamyl phosphate reductase
TPASS_0353(-) | 378765 | 378779 | sub (G→S) | sub (S→G) | 123 | none
TPASS_0353(-) | 378766 | 378780 | sub (G→S) | sub (S→G) | 122 | none |  | ribonuclease H
TPASS_0358(-) | 382564 | 382578 | sub (T→K) | sub (K→T) | 512 | none |  | hypothetical protein
TPASS_0371(+) | 396733 | 396747 | sub (G→S) | sub (S→G) | 775 | none |  | hypothetical protein
TPASS_0376(-) | 402892 - 402893 | 402907 | del (C) | in (C) | 46 - 47 | TP | NA3) | hypothetical protein
TPASS_0377(+) | 403113 - 403114 | 403129 | del (C) | in (C) | 107 - 108 | GF |  | hypothetical protein
TPASS_0379(-) | 403921 | 403937 | sub (G→A) | sub (A→G) | 2414 | AAC (I→S) |  | preprotein translocase subunit
TPASS_0379(-) | 403922 | 403938 | sub (A→T) | sub (T→A) | 2413 | none
IGR TPASS_0380 - TPASS_0381 | 408346 - 408347 | 408363 | del (G) | in (G) | - | -
IGR TPASS_0380 - TPASS_0381 | 408386 - 408387 | 408404 | del (G) | in (G) | - | -
IGR TPASS_0381 - TPASS_0382 | 409132 - 409135 | 409149 - 409150 | in (CCCC) | del (CCCC) | - | -
IGR TPASS_0396 - TPASS_0397 | 423498 | 423511 - 423512 | in (G) | del (G) | - | -
TPASS_0402(+) | 428615 | 428628 | sub (T→C) | sub (C→T) | 401 | AAC (P→L) |  | flagellum-specific ATP synthase
[NAME]) | 432257 | 432270 | sub (C→Y) | sub (Y→C) | 118 | none |  | phosphoglycolate phosphatase
[NAME]) | 432741 | 432753 - 432754 | in (C) | del (C) | 602 | TP
IGR TPASS_0408 - TPASS_0409 | 436157 - 436158 | 436170 - 436171 | del (GC) | in (GC) | - | -
TPASS_0415(+) | 443822 - 443823 | 443837 | del (G) | in (G) | 439 - 440 | TP |  | hypothetical protein
TPASS_0417(-) | 446188 | 446203 | sub (G→R) | sub (R→G) | 707 | none |  | apolipoprotein N-acyltransferase
TPASS_0419(+) | 448660 | 448674 - 448675 | in (T) | del (T) | 550 | GF |  | possible survival protein
TPASS_0420(+) | 448660 | 448674 - 448675 | in (T) | del (T) | 6 | GF | NA1) | hypothetical protein
IGR TPASS_0432 - TPASS_0424 | 453080 - 453081 | 453095 | del (G) | in (G) | - | -
TPASS_0424(+) | 453624 - 453625 | 453640 | del (G) | in (G) | 515 - 516 | TP |  | possible V-type ATPase, subunit E
TPASS_0425(+) | 453998 | 454013 - 454014 | in (C) | del (C) | 213 | EP |  | hypothetical protein
TPASS_0444(+) | 472025 | 472040 | sub (G→R) | sub (R→G) | 114 | none |  | hypothetical protein
TPASS_0444(+) | 472103 | 472118 | sub (G→R) | sub (R→G) | 192 | none
TPASS_0444(+) | 472130 | 472145 | sub (G→R) | sub (R→G) | 219 | none
TPASS_0461(+) | 492420 | 492434 - 492435 | in (C) | del (C) | 346 | EP
IGR TPASS_0461 -TPASS_0462 | 492618 - 492619 | 492633 | del (G) | in (G) | - | -
TPASS_0462(+) | 493472 | 493486 - 493487 | in (G) | del (G) | 834 | GF |  | hypothetical protein
TPASS_0477(-) | 508022 - 508023 | 508037 | del (C) | in (C) | 633 - 634 | TP |  | possible glucose-6-phosphate 1-dehydrogenase
TPASS_0479(-) | 510907 - 510908 | 510923 | del (C) | in (C) | 103 - 104 | EP |  | hypothetical protein
TPASS_0481(+) | 513024 - 513025 | 513041 | del (C) | in (C) | 1383 - 1384 | GF |  | hypothetical protein
TPASS_0483(-) | 514677 | 514694 | sub (G→R) | sub (R→G) | 404 | none |  | hypothetical protein/fibronectin-binding protein
TPASS_0483(-) | 514679 | 514696 | sub (G→R) | sub (R→G) | 402 | none
TPASS_0483(-) | 514687 | 514704 | sub (G→R) | sub (R→G) | 394 | none
TPASS_0487(-) | 521803 - 521804 | 521821 | del (C) | in (C) | 277 - 278 | TP |  | hypothetical protein
TPASS_0491(+) | 527422 - 527423 | 527441 | del (G) | in (G) | 972 - 973 | EP |  | hypothetical protein
IGR TPASS_t0021 - TPASS_t0022 | 542308 | 542327 | sub (C→S) | sub (S→C) | - | -
IGR TPASS_t0021 - TPASS_t0022 | 542311 | 542330 | sub (C→S) | sub (S→C) | - | -
TPASS_0520(-) | 562719 - 562720 | 562739 | del (C) | in (C) | 452 - 453 | none | AF | sensory transduction histidine kinase; frameshift
TPASS_0533(-) | 577415 - 577416 | 577436 | del (G) | in (G) | 1146 - 1147 | EP |  | V-type ATPase, subunit I
IGR TPASS_0535 - TPASS_0536 | 579798 - 579799 | 579820 | del (C) | in (C) | - | -
TPASS_0536(-) | 579976 - 579977 | 579999 | del (C) | in (C) | 361 - 362 | EP |  | hypothetical protein
TPASS_0536(-) | 580025 - 580026 | 580049 | del (C) | in (C) | 312 - 313 | EP
TPASS_0555(-) | 602397 - 602398 | 602422 | del (G) | in (G) | 1156 - 1157 | TP |  | possible glutamate/aspartate transporter
TPASS_0560(-) | 607930 | 607955 | sub (C→Y) | sub (Y→C) | 1900 | none |  | transketolase A
TPASS_0575(+) | 625678 - 625679 | 625704 | del (C) | in (C) | 547 - 548 | AF4) |  | phosphoenolpyruvate-protein phosphotransferase; frameshift
TPASS_0588(-) | 641372 - 641373 | 641399 | del (G) | in (G) | 695 - 696 | GF | NA1) | hypothetical protein
TPASS_0591(-) | 643288 | 643315 | sub (G→A) | sub (A→G) | 138 | AAC (V→F) |  | HPr kinase
TPASS_0591(-) | 643290 | 643317 | sub (A→C) | sub (C→A) | 136 | AAC5)
TPASS_0591(-) | 643291 | 643318 | sub (C→G) | sub (G→C) | 135 | AAC (F→L)
TPASS_0594(-) | 647792 | 647818 - 647819 | in (C) | del (C) | 564 | EP |  | hypothetical protein
IGR TPASS_0598 - TPASS_0599 | 652359 - 652360 | 652386 | del (G) | in (G) | - | -
IGR TPASS_0598 - TPASS_0599 | 652360 | 652387 | sub (C→S) | sub (S→C) | - | -
TPASS_0605(-) | 658227 | 658254 | sub (C→S) | sub (S→C) | 354 | none |  | translation elongation factor TS
IGR TPASS_t0030 - TPASS_0608 | 659850 - 659851 | 659878 | del (C) | in (C) | - | -
TPASS_0619(-) | 672099 | 672127 | sub (T→C) | sub (C→T) | 417 | none |  | hypothetical protein
TPASS_0619(-) | 672118 | 672146 | sub (T→C) | sub (C→T) | 398 | AAC (R→Q)
TPASS_0619(-) | 672120 | 672148 | sub (A→G) | sub (G→A) | 396 | none
TPASS_0619(-) | 672125 | 672153 | sub (G→A) | sub (A→G) | 391 | AAC (C→R)
TPASS_0619(-) | 672132 | 672160 | sub (C→T) | sub (T→C) | 384 | none
TPASS_0619(-) | 672134 | 672162 | sub (G→A) | sub (A→G) | 382 | none
TPASS_0619(-) | 672135 | 672163 | sub (G→A) | sub (A→G) | 381 | none
TPASS_0619(-) | 672138 | 672166 | sub (G→C) | sub (C→G) | 378 | none
TPASS_0619(-) | 672144 | 672172 | sub (C→T) | sub (T→C) | 372 | none
TPASS_0619(-) | 672162 | 672190 | sub (C→T) | sub (T→C) | 354 | none
TPASS_0619(-) | 672171 | 672199 | sub (A→G) | sub (G→A) | 345 | none
TPASS_0619(-) | 672174 | 672202 | sub (A→G) | sub (G→A) | 342 | none
TPASS_0619(-) | 672180 | 672208 | sub (C→T) | sub (T→C) | 336 | none
TPASS_0622(-) | 677926 | 677955 | sub (C→S) | sub (S→C) | 591 | none |  | hypothetical protein
TPASS_0633(+) | 693042 | 693071 | sub (G→T) | sub (T→G) | 202 | AAC (Y→D) |  | protein-methionine-S-oxide reductase
TPASS_0639(+) | 699412 | 699441 | sub (G→S) | sub (S→G) | 236 | none |  | methyl-accepting chemotaxis protein
TPASS_0639(+) | 699414 | 699443 | sub (T→Y) | sub (Y→T) | 238 | none
TPASS_0639(+) | 699415 | 699444 | sub (T→Y) | sub (Y→T) | 239 | none
TPASS_0651(-) | 716956 - 716957 | 716986 | del (G) | in (G) | 35 - 36 | TP | NA3) | hypothetical integral membrane protein
IGR TPASS_0651 - TPASS_0652 | 716992 - 716993 | 717023 | del (C) | in (C) | - | -
TPASS_0663(+) | 727594 | 727625 | sub (G→R) | sub (R→G) | 593 | none |  | possible outer membrane protein
IGR TPASS_0683 - TPASS_0684 | 749697 | 749728 | sub (A→T) | sub (T→A) | - | -
TPASS_0692(-) | 760277 | 760308 | sub (G→K) | sub (K→G) | 1124 | none |  | protein RecA
TPASS_0695(+) | 764105 | 764136 | sub (C→M) | sub (M→C) | 198 | none |  | possible phosphoribosylglycinamide formyltransferase
TPASS_0703(-) | 769344 - 769345 | 769376 | del (C) | in (C) | 674 - 675 | GF | NA1) | hypothetical protein
TPASS_0709(+) | 777718 | 777750 | sub (C→M) | sub (M→C) | 383 | none |  | RNA polymerase sigma-28 factor
TPASS_0731(+) | 798746 - 798747 | 798779 | del (G) | in (G) | 625 - 626 | TP |  | hypothetical protein
TPASS_0736(-) | 803188 | 803221 | sub (C→Y) | sub (Y→C) | 529 | none |  | hydrogenase, gamma chain
TPASS_0762(+) | 826526 - 826527 | 826560 | del (C) | in (C) | 7 - 8 | EP2) |  | hypothetical protein
IGR TPASS_0776 - TPASS_0777 | 845841 | 845875 | sub (C→Y) | sub (Y→C) | - | -
TPASS_0780(-) | 847978 | 848012 | sub (G→K) | sub (K→G) | 1835 | none |  | NH(3)-dependent NAD(+) synthetase
IGR TPASS_0781 - TPASS_0782 | 850315 - 850316 | 850350 | del (G) | in (G) | - | -
TPASS_0782(-) | 850368 | 850402 - 850403 | in (A) | del (A) | 432 | GF | NA1) | hypothetical protein
TPASS_0783(-) | 851685 | 851719 | sub (C→S) | sub (S→C) | 277 | none |  | hypothetical protein
TPASS_0783(-) | 851781 | 851815 | sub (C→M) | sub (M→C) | 181 | none
TPASS_0796(-) | 864239 | 864273 | sub (C→M) | sub (M→C) | 376 | none |  | hypothetical protein
TPASS_0800(+) | 868554 | 868588 | sub (C→M) | sub (M→C) | 276 | none |  | serine-type D-Ala-D-Ala carboxypeptidase
[NAME]) | 874956 | 874990 | sub (T→W) | sub (W→T) | 1041 | none |  | sugar ABC transporter, ATP-binding protein
TPASS_0805(-) | 874956 | 874990 | sub (T→W) | sub (W→T) | 2254 | none |  | exoribonuclease II
[NAME]) | 875043 | 875077 | sub (C→Y) | sub (Y→C) | 1128 | none
TPASS_0805(-) | 875043 | 875077 | sub (C→Y) | sub (Y→C) | 2167 | none
TPASS_0805(-) | 875106 | 875140 | sub (A→M) | sub (M→A) | 2104 | none
TPASS_0805(-) | 875296 | 875330 | sub (T→Y) | sub (Y→T) | 1914 | none
TPASS_0805(-) | 876221 | 876255 | sub (G→C) | sub (C→G) | 989 | AAC (R→A)
TPASS_0805(-) | 876222 | 876256 | sub (C→G) | sub (G→C) | 988 | none
TPASS_0813(-) | 882910 - 882911 | 882945 | del (C) | in (C) | 1002 -1003 | TP |  | hypothetical protein
TPASS_0830(+) | 898779 - 898780 | 898815 | del (C) | in (C) | 705 - 706 | TP |  | pseudouridylate synthase
TPASS_0847(-) | 920388 | 920424 | sub (G→S) | sub (S→G) | 152 | none |  | hypothetical protein
TPASS_0856(+) | 935513 - 935514 | 935550 | del (C) | in (C) | 945 - 946 | EP |  | hypothetical protein
TPASS_0859(+) | 937857 | 937893 - 937894 | in (G) | del (G) | 696 | GF |  | hypothetical protein
TPASS_0866(-) | 947617 - 947618 | 947654 | del (C) | in (C) | 633 - 634 | AF4) |  | hypothetical protein; frameshift
TPASS_0883(-) | 962104 | 962141 | sub (A→M) | sub (M→A) | 711 | none |  | hypothetical integral membrane protein
IGR TPASS_0893 - TPASS_0894 | 974061 | 974197 - 974198 | in (G) | del (G) | - | -
TPASS_0899(-) | 981560 - 981561 | 981660 | del (C) | in (C) | 18 - 19 | GF |  | hypothetical protein
TPASS_0900(-) | 981560 - 981561 | 981660 | del (C) | in (C) | 2390 - 2391 | GF | NA1) | hypothetical protein
TPASS_0922(-) | 1002227 - 1002228 | 1002328 - 1002329 | del (GC) | in (GC) | 832 - 833 | TP6) | NA3) | hypothetical protein
TPASS_0922(-) | 1002757 | 1002859 | sub (G→S) | sub (S→G) | 303 | none
TPASS_0922(-) | 1003046 - 1003047 | 1003149 | del (C) | in (C) | 13 - 14 | TP
TPASS_0923(-) | 1003172 - 1003173 | 1003276 | del (G) | in (G) | 945 - 946 | FS7) |  | hypothetical protein
TPASS_0923(-) | 1003233 - 1003234 | 1003338 - 1003339 | del (GC) | in (GC) | 884 - 885 | FS7)
TPASS_0923(-) | 1003694 | 1003800 | sub (C→M) | sub (M→C) | 424 | none
TPASS_0923(-) | 1003697 | 1003803 | sub (C→M) | sub (M→C) | 421 | none
IGR TPASS_0924 - TPASS_t0042 | 1006824 - 1006825 | 1006931 | del (C) | in (C) | - | -
IGR TPASS_0926 - TPASS_0927 | 1009320 - 1009321 | 1009428 | del (G) | in (G) | - | -
TPASS_0928(+) | 1010691 - 1010692 | 1010800 | del (G) | in (G) | 642 - 643 | GF |  | hypothetical protein
IGR TPASS_0949 - TPASS_0950 | 1033588 - 1033589 | 1033698 | del (G) | in (G) | - | -
TPASS_0950(-) | 1033697 - 1033698 | 1033808 | del (C) | in (C) | 209 - 210 | FS | NA8) | hypothetical protein
TPASS_0969(-) | 1055379 | 1055489 - 1055490 | in (C) | del (C) | 65 | TP | NA3) | hypothetical protein
IGR TPASS_0975 - TPASS_0976 | 1060666 | 1060775 - 1060776 | in (G) | del (G) | - | -
TPASS_0983(+) | 1067549 | 1067658 | sub (G→C) | sub (C→G) | 206 | AAC (P→R) |  | hypothetical protein
TPASS_0993(-) | 1078835 - 1078836 | 1078945 | del (G) | in (G) | 870 - 871 | EP |  | possible rare lipoprotein A
TPASS_0995(+) | 1082213 - 1082214 | 1082324 | del (G) | in (G) | 1268 - 1269 | EP |  | cyclic nucleotide binding protein
TPASS_0997(-) | 1085307 | 1085418 | sub (A→R) | sub (R→A) | 578 | none |  | protease IV
TPASS_0997(-) | 1085343 | 1085454 | sub (C→S) | sub (S→C) | 542 | none
TPASS_0998(-) | 1087342 | 1087453 | sub (G→S) | sub (S→G) | 79 | none |  | sodium/proton-dependent alanine transporter
TPASS_1030(-) | 1125566 | 1125677 | sub (G→C) | sub (C→G) | 207 | none |  | hypothetical protein
TPASS_1030(-) | 1125634 - 1125635 | 1125746 | del (G) | in (G) | 138 - 139 | TP
TPASS_1030(-) | 1125689 | 1125801 | sub (T→G) | sub (G→T) | 84 | AAC (H→R)
TPASS_1030(-) | 1125690 | 1125802 | sub (C→T) | sub (T→C) | 85 | none
TPASS_1030(-) | 1125694 | 1125806 | sub (G→A) | sub (A→G) | 79 | none
sub, substitution; in, insertion; del, deletion; GF, gene fusion; EP, protein elongation; TP, protein truncation; AF, authentic frameshift; IGR, intergenic region; AAC, amino acid change; NA, gene was not annotated in the SS14-RS genome (CP004011.1)
1) ORF was not annotated in the SS14-RS genome due to fusion with another ORF
2) An alternative start codon was predicted
3) ORF was not annotated in the SS14-RS genome due to its length below the 150 bp limit
4) ORF was originally annotated with the authentic frameshift, correction of the sequencing error resulted in restoration of the reading frame
5) This substitution results in an amino acid change together with adjacent substitution
6) Error is outside of the newly identified ORF and have no effect on the [NAME]-RS proteome
7) Second frameshift mutations restores the reading frame
8) An alternative gene (TPASS_950a) was predicted in this region